Multiple sequence alignment - TraesCS1A01G016900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G016900 chr1A 100.000 7185 0 0 1 7185 9111404 9104220 0.000000e+00 13269
1 TraesCS1A01G016900 chr1A 85.632 348 33 9 6082 6412 9131005 9131352 4.120000e-92 350
2 TraesCS1A01G016900 chr1A 86.441 295 37 3 5828 6120 9194002 9194295 3.230000e-83 320
3 TraesCS1A01G016900 chr1B 91.469 2239 133 23 4619 6838 9842642 9844841 0.000000e+00 3024
4 TraesCS1A01G016900 chr1B 92.289 1634 106 16 1413 3037 9839488 9841110 0.000000e+00 2302
5 TraesCS1A01G016900 chr1B 92.451 1126 58 12 3034 4139 9841139 9842257 0.000000e+00 1583
6 TraesCS1A01G016900 chr1B 89.730 1110 85 15 3034 4129 9905215 9906309 0.000000e+00 1391
7 TraesCS1A01G016900 chr1B 93.109 682 43 3 2356 3035 9904505 9905184 0.000000e+00 996
8 TraesCS1A01G016900 chr1B 88.514 444 34 8 4140 4576 9842208 9842641 8.260000e-144 521
9 TraesCS1A01G016900 chr1B 86.402 478 42 15 822 1297 9838782 9839238 1.080000e-137 501
10 TraesCS1A01G016900 chr1B 87.395 357 28 5 6057 6412 9674049 9673709 1.880000e-105 394
11 TraesCS1A01G016900 chr1B 85.577 104 12 2 7082 7185 9845149 9845249 9.860000e-19 106
12 TraesCS1A01G016900 chr1B 85.859 99 9 2 610 703 9838550 9838648 4.590000e-17 100
13 TraesCS1A01G016900 chr1D 88.301 1889 125 26 4553 6412 7413132 7411311 0.000000e+00 2176
14 TraesCS1A01G016900 chr1D 92.735 1115 69 5 4487 5592 7474640 7473529 0.000000e+00 1600
15 TraesCS1A01G016900 chr1D 89.337 1191 97 19 5767 6948 7473514 7472345 0.000000e+00 1469
16 TraesCS1A01G016900 chr1D 84.654 1577 112 52 1 1528 7479509 7478014 0.000000e+00 1452
17 TraesCS1A01G016900 chr1D 91.410 908 64 9 3231 4137 7414248 7413354 0.000000e+00 1232
18 TraesCS1A01G016900 chr1D 93.142 802 47 4 3339 4139 7475693 7474899 0.000000e+00 1170
19 TraesCS1A01G016900 chr1D 89.666 929 77 16 1417 2337 7477582 7476665 0.000000e+00 1166
20 TraesCS1A01G016900 chr1D 87.225 728 73 12 2459 3168 7476592 7475867 0.000000e+00 811
21 TraesCS1A01G016900 chr1D 84.722 648 56 23 5790 6410 7041114 7040483 6.160000e-170 608
22 TraesCS1A01G016900 chr1D 91.096 292 23 2 4140 4428 7474948 7474657 6.760000e-105 392
23 TraesCS1A01G016900 chr1D 91.481 270 22 1 4140 4409 7413401 7413133 3.170000e-98 370
24 TraesCS1A01G016900 chr1D 87.973 291 28 2 5823 6109 7042492 7042205 3.210000e-88 337
25 TraesCS1A01G016900 chr1D 84.752 282 25 7 6149 6412 7692957 7693238 4.270000e-67 267
26 TraesCS1A01G016900 chr3D 83.789 549 83 5 2477 3023 407391410 407390866 3.840000e-142 516
27 TraesCS1A01G016900 chr3D 89.073 302 30 3 3309 3609 407390575 407390276 8.800000e-99 372
28 TraesCS1A01G016900 chr3D 77.410 695 103 35 4915 5593 407389275 407388619 1.470000e-96 364
29 TraesCS1A01G016900 chr3D 88.276 290 33 1 1500 1789 407392936 407392648 5.340000e-91 346
30 TraesCS1A01G016900 chr3D 93.011 186 13 0 1910 2095 407392548 407392363 9.180000e-69 272
31 TraesCS1A01G016900 chr3A 82.895 608 60 23 1499 2095 544380081 544380655 2.310000e-139 507
32 TraesCS1A01G016900 chr3A 77.345 693 105 34 4915 5593 544384241 544384895 5.300000e-96 363
33 TraesCS1A01G016900 chr3A 88.040 301 33 3 3310 3609 544382938 544383236 3.190000e-93 353
34 TraesCS1A01G016900 chr4B 82.004 539 46 16 116 637 69134999 69134495 1.870000e-110 411
35 TraesCS1A01G016900 chrUn 87.240 337 39 4 5828 6162 276781355 276781021 1.460000e-101 381
36 TraesCS1A01G016900 chrUn 80.037 546 51 20 116 637 117190882 117190371 1.150000e-92 351
37 TraesCS1A01G016900 chr3B 77.778 693 102 34 4915 5593 533023187 533022533 5.260000e-101 379
38 TraesCS1A01G016900 chr3B 87.931 290 34 1 1500 1789 533027854 533027566 2.480000e-89 340
39 TraesCS1A01G016900 chr3B 93.548 186 12 0 1910 2095 533027467 533027282 1.970000e-70 278
40 TraesCS1A01G016900 chr7D 82.012 328 55 4 1500 1826 548342820 548342496 7.100000e-70 276
41 TraesCS1A01G016900 chr7D 81.098 328 57 5 1500 1826 577379232 577378909 2.570000e-64 257
42 TraesCS1A01G016900 chr5D 82.012 328 55 4 1500 1826 505025463 505025139 7.100000e-70 276
43 TraesCS1A01G016900 chr2D 80.793 328 59 4 1500 1826 27629316 27629640 3.330000e-63 254
44 TraesCS1A01G016900 chr6A 82.564 195 30 3 3274 3466 611326997 611326805 1.240000e-37 169
45 TraesCS1A01G016900 chr6B 80.556 216 32 7 3258 3468 708688104 708687894 2.680000e-34 158


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G016900 chr1A 9104220 9111404 7184 True 13269.000000 13269 100.000000 1 7185 1 chr1A.!!$R1 7184
1 TraesCS1A01G016900 chr1B 9904505 9906309 1804 False 1193.500000 1391 91.419500 2356 4129 2 chr1B.!!$F2 1773
2 TraesCS1A01G016900 chr1B 9838550 9845249 6699 False 1162.428571 3024 88.937286 610 7185 7 chr1B.!!$F1 6575
3 TraesCS1A01G016900 chr1D 7411311 7414248 2937 True 1259.333333 2176 90.397333 3231 6412 3 chr1D.!!$R2 3181
4 TraesCS1A01G016900 chr1D 7472345 7479509 7164 True 1151.428571 1600 89.693571 1 6948 7 chr1D.!!$R3 6947
5 TraesCS1A01G016900 chr1D 7040483 7042492 2009 True 472.500000 608 86.347500 5790 6410 2 chr1D.!!$R1 620
6 TraesCS1A01G016900 chr3D 407388619 407392936 4317 True 374.000000 516 86.311800 1500 5593 5 chr3D.!!$R1 4093
7 TraesCS1A01G016900 chr3A 544380081 544384895 4814 False 407.666667 507 82.760000 1499 5593 3 chr3A.!!$F1 4094
8 TraesCS1A01G016900 chr4B 69134495 69134999 504 True 411.000000 411 82.004000 116 637 1 chr4B.!!$R1 521
9 TraesCS1A01G016900 chrUn 117190371 117190882 511 True 351.000000 351 80.037000 116 637 1 chrUn.!!$R1 521
10 TraesCS1A01G016900 chr3B 533022533 533023187 654 True 379.000000 379 77.778000 4915 5593 1 chr3B.!!$R1 678
11 TraesCS1A01G016900 chr3B 533027282 533027854 572 True 309.000000 340 90.739500 1500 2095 2 chr3B.!!$R2 595

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 0.381801 AATCAAATCCATCGCCACGC 59.618 50.0 0.00 0.0 0.00 5.34 F
445 489 0.465824 GATCCTGAATGCTGCCTGCT 60.466 55.0 0.00 0.0 43.37 4.24 F
784 881 0.541863 CCCTCACCGGCTTATTGTCT 59.458 55.0 0.00 0.0 0.00 3.41 F
1126 1234 0.884514 GTTCCTTTGGCTCAGGCTTC 59.115 55.0 0.00 0.0 38.73 3.86 F
1490 2297 1.035139 CCACCTGCTTTTTGCTGACT 58.965 50.0 0.00 0.0 42.27 3.41 F
2484 4009 1.231221 ATGTGTTACGCAAAAGCCGA 58.769 45.0 1.78 0.0 0.00 5.54 F
4240 6402 0.259938 AAGGCACATCATCCCCCTTC 59.740 55.0 0.00 0.0 30.38 3.46 F
4490 6964 0.959372 AAGTGGAGCACATCAGCAGC 60.959 55.0 0.00 0.0 36.74 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1849 2658 0.659427 CAATGGTGGCAGCTACATCG 59.341 55.000 18.53 0.0 0.00 3.84 R
2214 3737 4.235079 AGCCAAGCAGACCATAAATGTA 57.765 40.909 0.00 0.0 0.00 2.29 R
2462 3987 2.835475 GCTTTTGCGTAACACATTGC 57.165 45.000 0.00 0.0 34.86 3.56 R
2977 4504 2.304180 AGGTCCAGGACTTCATGAACAG 59.696 50.000 19.57 0.0 32.47 3.16 R
3136 5207 4.166144 TCTTTTCTTTCTGGTGAGGACCTT 59.834 41.667 0.00 0.0 43.58 3.50 R
4275 6437 0.030504 TGCATGTCAAAACGCCACAG 59.969 50.000 0.00 0.0 0.00 3.66 R
5450 7958 2.388735 TCCCAGAGACAGCAACGATAT 58.611 47.619 0.00 0.0 0.00 1.63 R
6305 10258 2.039746 CACTCCCATCACAAGGGTACAA 59.960 50.000 0.00 0.0 46.82 2.41 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
66 67 0.887247 CCGCACCACAATCAAATCCA 59.113 50.000 0.00 0.00 0.00 3.41
67 68 1.477700 CCGCACCACAATCAAATCCAT 59.522 47.619 0.00 0.00 0.00 3.41
68 69 2.480073 CCGCACCACAATCAAATCCATC 60.480 50.000 0.00 0.00 0.00 3.51
69 70 2.792196 CGCACCACAATCAAATCCATCG 60.792 50.000 0.00 0.00 0.00 3.84
70 71 2.801063 CACCACAATCAAATCCATCGC 58.199 47.619 0.00 0.00 0.00 4.58
71 72 1.750778 ACCACAATCAAATCCATCGCC 59.249 47.619 0.00 0.00 0.00 5.54
72 73 1.750206 CCACAATCAAATCCATCGCCA 59.250 47.619 0.00 0.00 0.00 5.69
73 74 2.480073 CCACAATCAAATCCATCGCCAC 60.480 50.000 0.00 0.00 0.00 5.01
74 75 1.401552 ACAATCAAATCCATCGCCACG 59.598 47.619 0.00 0.00 0.00 4.94
75 76 0.381801 AATCAAATCCATCGCCACGC 59.618 50.000 0.00 0.00 0.00 5.34
76 77 0.747644 ATCAAATCCATCGCCACGCA 60.748 50.000 0.00 0.00 0.00 5.24
77 78 1.226379 CAAATCCATCGCCACGCAC 60.226 57.895 0.00 0.00 0.00 5.34
78 79 2.749865 AAATCCATCGCCACGCACG 61.750 57.895 0.00 0.00 0.00 5.34
95 96 2.600470 GCCCCCACTCAAACCCAC 60.600 66.667 0.00 0.00 0.00 4.61
103 104 4.278513 TCAAACCCACAGCCCCCG 62.279 66.667 0.00 0.00 0.00 5.73
258 287 1.374252 CCCCGGTGAGTTCAGTTCG 60.374 63.158 0.00 0.00 0.00 3.95
375 419 1.743252 CTGCCCGGAGCTCACTTTC 60.743 63.158 17.19 0.71 44.23 2.62
376 420 2.436824 GCCCGGAGCTCACTTTCC 60.437 66.667 17.19 0.00 38.99 3.13
445 489 0.465824 GATCCTGAATGCTGCCTGCT 60.466 55.000 0.00 0.00 43.37 4.24
449 493 1.595993 CTGAATGCTGCCTGCTGCTT 61.596 55.000 19.48 11.97 43.37 3.91
450 494 1.183030 TGAATGCTGCCTGCTGCTTT 61.183 50.000 19.48 18.53 43.37 3.51
451 495 0.736325 GAATGCTGCCTGCTGCTTTG 60.736 55.000 21.02 0.00 43.37 2.77
471 515 6.473455 GCTTTGTTGTTGCATACATAGATTCC 59.527 38.462 14.35 0.03 36.44 3.01
472 516 5.733226 TGTTGTTGCATACATAGATTCCG 57.267 39.130 0.00 0.00 36.44 4.30
473 517 4.035091 TGTTGTTGCATACATAGATTCCGC 59.965 41.667 0.00 0.00 36.44 5.54
474 518 3.138304 TGTTGCATACATAGATTCCGCC 58.862 45.455 0.00 0.00 0.00 6.13
475 519 3.181455 TGTTGCATACATAGATTCCGCCT 60.181 43.478 0.00 0.00 0.00 5.52
481 525 1.202698 ACATAGATTCCGCCTTGCCTC 60.203 52.381 0.00 0.00 0.00 4.70
508 552 4.822350 GGGGGAGATGCTTAGATTGTTTAC 59.178 45.833 0.00 0.00 0.00 2.01
578 627 2.398554 CCGTCAGCAACCAATCGGG 61.399 63.158 0.00 0.00 44.81 5.14
586 635 1.955208 GCAACCAATCGGGGAGTGATT 60.955 52.381 0.00 0.00 42.91 2.57
588 637 1.584724 ACCAATCGGGGAGTGATTCT 58.415 50.000 0.00 0.00 42.91 2.40
626 675 1.453155 CCTTGCTTATTGCGTGGAGT 58.547 50.000 0.00 0.00 46.63 3.85
710 768 1.648302 CCAAGGATGCTGGGGATGGA 61.648 60.000 0.00 0.00 0.00 3.41
712 770 0.776176 AAGGATGCTGGGGATGGATC 59.224 55.000 0.00 0.00 0.00 3.36
784 881 0.541863 CCCTCACCGGCTTATTGTCT 59.458 55.000 0.00 0.00 0.00 3.41
837 942 0.892358 TAGCGGTCTGTCTGTTCCGT 60.892 55.000 0.00 6.95 44.07 4.69
847 952 3.361786 TGTCTGTTCCGTGGATCATCTA 58.638 45.455 0.00 0.00 0.00 1.98
858 963 5.049405 CCGTGGATCATCTATTTGTAAAGCC 60.049 44.000 0.00 0.00 0.00 4.35
886 991 1.541588 GTTGAGCCAACCTGGTGATTC 59.458 52.381 0.00 0.00 40.46 2.52
960 1065 4.285775 TGTGGGTGAATCTGATCTAACACA 59.714 41.667 14.22 12.00 33.32 3.72
989 1097 5.106157 GCTGTTGTGACATATTTACAGGCTT 60.106 40.000 14.14 0.00 34.72 4.35
1013 1121 1.821936 CAGCGATGGAGAAGGAGCT 59.178 57.895 0.00 0.00 35.06 4.09
1038 1146 4.103103 TCCAGCGACGTCTCTGCG 62.103 66.667 26.37 19.68 37.94 5.18
1072 1180 1.925185 GTGTTAGGAATCGAAGACGCC 59.075 52.381 0.00 0.00 42.51 5.68
1120 1228 3.708631 TGGAATTTTGTTCCTTTGGCTCA 59.291 39.130 8.17 0.00 39.31 4.26
1126 1234 0.884514 GTTCCTTTGGCTCAGGCTTC 59.115 55.000 0.00 0.00 38.73 3.86
1160 1268 5.049680 TCGTTTAGCAAATGGACAAACTCTC 60.050 40.000 0.00 0.00 0.00 3.20
1206 1314 3.882025 CGGCTTTCTGCTGGTCTC 58.118 61.111 0.00 0.00 44.06 3.36
1219 1327 5.934625 TCTGCTGGTCTCTATTTTTCAAGAC 59.065 40.000 0.00 0.00 37.90 3.01
1297 1410 6.712547 GGTATGCTACAAAATCTTCCAGCTAT 59.287 38.462 0.00 0.00 0.00 2.97
1303 1416 8.458843 GCTACAAAATCTTCCAGCTATGTTTAA 58.541 33.333 0.00 0.00 0.00 1.52
1353 1469 5.299028 TGCTTACAATGTGCAGAAAGAAAGA 59.701 36.000 0.00 0.00 32.55 2.52
1354 1470 6.183360 TGCTTACAATGTGCAGAAAGAAAGAA 60.183 34.615 0.00 0.00 32.55 2.52
1355 1471 6.697019 GCTTACAATGTGCAGAAAGAAAGAAA 59.303 34.615 0.00 0.00 0.00 2.52
1356 1472 7.096312 GCTTACAATGTGCAGAAAGAAAGAAAG 60.096 37.037 0.00 0.00 0.00 2.62
1357 1473 6.455360 ACAATGTGCAGAAAGAAAGAAAGA 57.545 33.333 0.00 0.00 0.00 2.52
1358 1474 7.047460 ACAATGTGCAGAAAGAAAGAAAGAT 57.953 32.000 0.00 0.00 0.00 2.40
1404 1520 9.982291 TCTGTTATATTTGTTTATCGCTTGTTC 57.018 29.630 0.00 0.00 0.00 3.18
1437 1701 7.352739 GTTGTTAATGGAGTACTTGTTGAGTG 58.647 38.462 0.00 0.00 39.48 3.51
1438 1704 6.822442 TGTTAATGGAGTACTTGTTGAGTGA 58.178 36.000 0.00 0.00 39.48 3.41
1469 2276 3.984508 GCATGCTGCAATGATAGAGTT 57.015 42.857 11.37 0.00 44.26 3.01
1478 2285 3.065925 GCAATGATAGAGTTTCCACCTGC 59.934 47.826 0.00 0.00 0.00 4.85
1482 2289 4.985538 TGATAGAGTTTCCACCTGCTTTT 58.014 39.130 0.00 0.00 0.00 2.27
1485 2292 2.101415 AGAGTTTCCACCTGCTTTTTGC 59.899 45.455 0.00 0.00 43.25 3.68
1490 2297 1.035139 CCACCTGCTTTTTGCTGACT 58.965 50.000 0.00 0.00 42.27 3.41
1495 2302 2.821969 CCTGCTTTTTGCTGACTACCAT 59.178 45.455 0.00 0.00 42.27 3.55
1496 2303 3.366679 CCTGCTTTTTGCTGACTACCATG 60.367 47.826 0.00 0.00 42.27 3.66
1553 2362 4.773013 GGTTACAACCGATGGGAATAGAA 58.227 43.478 0.00 0.00 39.66 2.10
1555 2364 3.992943 ACAACCGATGGGAATAGAACA 57.007 42.857 0.00 0.00 36.97 3.18
1564 2373 3.976015 TGGGAATAGAACAAATGGACCC 58.024 45.455 0.00 0.00 35.82 4.46
1780 2589 4.480480 CCAGGGTTCAGGCTCCTA 57.520 61.111 0.00 0.00 0.00 2.94
1815 2624 6.989169 GTGCCAAGTCATTCTGATTCTACTAT 59.011 38.462 0.00 0.00 0.00 2.12
2208 3724 4.270008 ACCCAAAATATAGCAGTCACCAC 58.730 43.478 0.00 0.00 0.00 4.16
2211 3734 5.418840 CCCAAAATATAGCAGTCACCACTTT 59.581 40.000 0.00 0.00 0.00 2.66
2214 3737 8.686334 CCAAAATATAGCAGTCACCACTTTATT 58.314 33.333 0.00 0.00 0.00 1.40
2310 3833 4.158394 CACCTGTGGCATTAGCAACTATTT 59.842 41.667 0.00 0.00 45.34 1.40
2311 3834 4.772100 ACCTGTGGCATTAGCAACTATTTT 59.228 37.500 0.00 0.00 45.34 1.82
2312 3835 5.104374 CCTGTGGCATTAGCAACTATTTTG 58.896 41.667 0.00 0.00 45.34 2.44
2313 3836 4.493547 TGTGGCATTAGCAACTATTTTGC 58.506 39.130 0.58 0.58 45.34 3.68
2314 3837 4.021632 TGTGGCATTAGCAACTATTTTGCA 60.022 37.500 11.33 0.00 45.34 4.08
2317 3840 8.896104 TGTGGCATTAGCAACTATTTTGCAAAC 61.896 37.037 12.39 0.00 45.34 2.93
2462 3987 3.334691 TGCCCAAGTAATCTGAAGAACG 58.665 45.455 0.00 0.00 0.00 3.95
2482 4007 1.455408 GCAATGTGTTACGCAAAAGCC 59.545 47.619 1.78 0.00 0.00 4.35
2484 4009 1.231221 ATGTGTTACGCAAAAGCCGA 58.769 45.000 1.78 0.00 0.00 5.54
2517 4042 5.450274 GGATTTTGCAATTTGTTTGGTTGCT 60.450 36.000 0.00 0.00 46.22 3.91
2875 4400 7.305935 CCTGTTTTGACGTTTGACATGTATTTG 60.306 37.037 0.00 0.00 0.00 2.32
2939 4464 5.883673 AGCACCTGAAGTTGTTAAAGTTACA 59.116 36.000 0.00 0.00 0.00 2.41
2945 4470 8.076178 CCTGAAGTTGTTAAAGTTACATCAAGG 58.924 37.037 0.00 0.00 0.00 3.61
2961 4486 5.539955 ACATCAAGGTGCCTAATTTCTTGTT 59.460 36.000 0.00 0.00 36.94 2.83
2994 4523 6.824305 AAAATACTGTTCATGAAGTCCTGG 57.176 37.500 8.80 0.00 0.00 4.45
3038 5094 2.354328 TCCCAGATTACCACCCAGTTT 58.646 47.619 0.00 0.00 0.00 2.66
3136 5207 4.836175 TGACCTACCACTGTAAGAACATCA 59.164 41.667 0.00 0.00 37.43 3.07
3281 5424 8.035394 TCTGACTTGAGTTAAGCTACTTTATGG 58.965 37.037 0.00 0.00 40.16 2.74
3589 5736 2.329267 TCTCTGCTTTCCTGGTGAGAA 58.671 47.619 0.00 0.00 0.00 2.87
3650 5800 5.048013 CCTTCAAGGGGTTGAATCTGTAAAC 60.048 44.000 0.00 0.00 39.85 2.01
3744 5905 9.822185 AGCATTTTTCACTTTCACTTATTTTCT 57.178 25.926 0.00 0.00 0.00 2.52
3855 6016 6.806739 GCTAGTTGGATTAACAAATTGGTGTC 59.193 38.462 0.00 0.00 41.88 3.67
3879 6040 9.020813 GTCCTGTTGAATTTGTTCTTAGTTTTC 57.979 33.333 0.00 0.00 0.00 2.29
3979 6141 2.325133 TATCTGGGAGATTGGGCACCC 61.325 57.143 0.00 0.00 41.60 4.61
4058 6220 7.644062 TCTCTACTATATAGGCTGGCATAAGT 58.356 38.462 14.25 2.37 0.00 2.24
4109 6271 3.655481 CAACCGTTGCCTGAGTCC 58.345 61.111 0.00 0.00 0.00 3.85
4110 6272 1.227823 CAACCGTTGCCTGAGTCCA 60.228 57.895 0.00 0.00 0.00 4.02
4111 6273 1.227853 AACCGTTGCCTGAGTCCAC 60.228 57.895 0.00 0.00 0.00 4.02
4112 6274 1.978455 AACCGTTGCCTGAGTCCACA 61.978 55.000 0.00 0.00 0.00 4.17
4113 6275 1.227823 CCGTTGCCTGAGTCCACAA 60.228 57.895 0.00 0.00 0.00 3.33
4114 6276 0.817634 CCGTTGCCTGAGTCCACAAA 60.818 55.000 0.00 0.00 0.00 2.83
4115 6277 1.021202 CGTTGCCTGAGTCCACAAAA 58.979 50.000 0.00 0.00 0.00 2.44
4116 6278 1.403679 CGTTGCCTGAGTCCACAAAAA 59.596 47.619 0.00 0.00 0.00 1.94
4139 6301 3.692791 AAAACTCGACCTCAAAACTGC 57.307 42.857 0.00 0.00 0.00 4.40
4140 6302 1.594331 AACTCGACCTCAAAACTGCC 58.406 50.000 0.00 0.00 0.00 4.85
4141 6303 0.759346 ACTCGACCTCAAAACTGCCT 59.241 50.000 0.00 0.00 0.00 4.75
4142 6304 1.270358 ACTCGACCTCAAAACTGCCTC 60.270 52.381 0.00 0.00 0.00 4.70
4143 6305 0.756294 TCGACCTCAAAACTGCCTCA 59.244 50.000 0.00 0.00 0.00 3.86
4144 6306 0.868406 CGACCTCAAAACTGCCTCAC 59.132 55.000 0.00 0.00 0.00 3.51
4145 6307 1.810031 CGACCTCAAAACTGCCTCACA 60.810 52.381 0.00 0.00 0.00 3.58
4146 6308 2.297701 GACCTCAAAACTGCCTCACAA 58.702 47.619 0.00 0.00 0.00 3.33
4147 6309 2.024414 ACCTCAAAACTGCCTCACAAC 58.976 47.619 0.00 0.00 0.00 3.32
4148 6310 1.338020 CCTCAAAACTGCCTCACAACC 59.662 52.381 0.00 0.00 0.00 3.77
4149 6311 1.002468 CTCAAAACTGCCTCACAACCG 60.002 52.381 0.00 0.00 0.00 4.44
4150 6312 0.738389 CAAAACTGCCTCACAACCGT 59.262 50.000 0.00 0.00 0.00 4.83
4151 6313 1.134175 CAAAACTGCCTCACAACCGTT 59.866 47.619 0.00 0.00 0.00 4.44
4152 6314 0.738389 AAACTGCCTCACAACCGTTG 59.262 50.000 9.80 9.80 0.00 4.10
4153 6315 1.724582 AACTGCCTCACAACCGTTGC 61.725 55.000 11.29 0.00 0.00 4.17
4154 6316 2.904866 TGCCTCACAACCGTTGCC 60.905 61.111 11.29 0.00 0.00 4.52
4155 6317 2.594592 GCCTCACAACCGTTGCCT 60.595 61.111 11.29 0.00 0.00 4.75
4156 6318 2.908073 GCCTCACAACCGTTGCCTG 61.908 63.158 11.29 3.54 0.00 4.85
4240 6402 0.259938 AAGGCACATCATCCCCCTTC 59.740 55.000 0.00 0.00 30.38 3.46
4263 6425 8.882415 TTCAGTCAATTTACTCTAGTTTCGTT 57.118 30.769 0.00 0.00 0.00 3.85
4275 6437 2.401351 AGTTTCGTTCTTCGTGGCTAC 58.599 47.619 0.00 0.00 40.80 3.58
4308 6470 4.440802 TTGACATGCAAGTGGTTTTGTACC 60.441 41.667 0.00 0.00 38.48 3.34
4349 6511 7.118680 CAGCAGAATCAGCAAATAACCAAAAAT 59.881 33.333 0.00 0.00 0.00 1.82
4394 6556 5.523916 TCTCGAAACTTCTTTCCTCTGTTTG 59.476 40.000 0.00 0.00 33.37 2.93
4409 6571 4.196193 TCTGTTTGTTTCGTTCTCCATGT 58.804 39.130 0.00 0.00 0.00 3.21
4449 6614 3.775654 GTGAGCCCACCCCGAGAG 61.776 72.222 0.00 0.00 37.33 3.20
4490 6964 0.959372 AAGTGGAGCACATCAGCAGC 60.959 55.000 0.00 0.00 36.74 5.25
4511 6985 3.873910 CGGTGTTGACTCCATTCCTTAT 58.126 45.455 3.46 0.00 0.00 1.73
4513 6987 4.200092 GGTGTTGACTCCATTCCTTATCC 58.800 47.826 0.00 0.00 0.00 2.59
4575 7056 1.202615 GCAGCCAGTCATATGCAGAGA 60.203 52.381 0.00 0.00 38.54 3.10
4576 7057 2.756829 CAGCCAGTCATATGCAGAGAG 58.243 52.381 0.00 0.00 0.00 3.20
4615 7097 5.088680 AGAAAGAATCTTGAGCTGGAGAG 57.911 43.478 0.00 0.00 33.39 3.20
4653 7135 6.954684 AGATGGAGTTTAGTTTCTCAGGAGTA 59.045 38.462 0.00 0.00 32.93 2.59
4704 7186 5.012046 TGTCCATGACATGTTAGTCTCAGTT 59.988 40.000 14.26 0.00 37.67 3.16
4705 7187 5.578727 GTCCATGACATGTTAGTCTCAGTTC 59.421 44.000 14.26 0.00 39.27 3.01
4750 7232 9.372369 GAAGTGATATTACTGGTATTCTATGGC 57.628 37.037 0.16 0.00 0.00 4.40
4792 7274 1.002792 GAAAGGGTCAACGCTGTGTTC 60.003 52.381 3.16 0.00 39.29 3.18
4880 7362 4.957296 TCTGTCTTTCTCCCAACAGTAAC 58.043 43.478 0.00 0.00 40.01 2.50
4895 7385 7.050377 CCAACAGTAACTATCCTGATGTGAAT 58.950 38.462 0.00 0.00 31.66 2.57
4984 7476 5.163652 GGAAGTTTAACATGTAGGTGCCATC 60.164 44.000 0.00 0.00 0.00 3.51
5000 7492 6.667414 AGGTGCCATCTTTATTAAAACCATGA 59.333 34.615 0.00 0.00 0.00 3.07
5050 7542 5.106038 TGCTTGAATGACCAATGAAGATGTC 60.106 40.000 0.00 0.00 0.00 3.06
5063 7557 7.431249 CAATGAAGATGTCTATCCCATTTTGG 58.569 38.462 0.00 0.00 36.13 3.28
5067 7561 3.275617 TGTCTATCCCATTTTGGTCCG 57.724 47.619 0.00 0.00 35.17 4.79
5072 7566 2.366640 TCCCATTTTGGTCCGTGAAA 57.633 45.000 0.00 0.00 35.17 2.69
5081 7581 1.070134 TGGTCCGTGAAAGGTTCAGAG 59.930 52.381 0.00 0.00 41.01 3.35
5093 7593 6.596888 TGAAAGGTTCAGAGAAGCATAATCAG 59.403 38.462 11.00 0.00 34.08 2.90
5130 7630 2.232941 CCAAATGCTCAGCTGAACCAAT 59.767 45.455 18.85 8.23 0.00 3.16
5145 7648 8.325046 AGCTGAACCAATAGACTATTCTTTTCT 58.675 33.333 4.66 0.00 32.75 2.52
5265 7773 8.552034 CCATCTTTACGAAGTTTATGGATCTTC 58.448 37.037 0.00 0.00 37.78 2.87
5450 7958 1.961793 AAAGGTGCGTACTGCTTCAA 58.038 45.000 3.01 0.00 46.63 2.69
5476 7986 3.265791 GTTGCTGTCTCTGGGAATACTG 58.734 50.000 0.00 0.00 0.00 2.74
5484 7995 6.194967 TGTCTCTGGGAATACTGAAGTATGA 58.805 40.000 3.78 0.00 40.78 2.15
5596 8110 5.542779 GAATGGACTGTCAAGTAAGTCACT 58.457 41.667 10.38 0.00 43.81 3.41
5665 8179 5.308825 ACCTCAACATCTTGGTTCTACTTG 58.691 41.667 0.00 0.00 0.00 3.16
5739 8253 8.715088 ACCAACTTATTGACGTAAATGTCTAAC 58.285 33.333 8.51 0.00 39.64 2.34
5776 8290 8.536175 AGAGTAAAGAGGAAATTACTGAGAAGG 58.464 37.037 3.15 0.00 41.23 3.46
5787 8301 6.874288 ATTACTGAGAAGGCTTGATTATGC 57.126 37.500 3.46 0.00 0.00 3.14
5788 8302 4.226427 ACTGAGAAGGCTTGATTATGCA 57.774 40.909 3.46 0.00 0.00 3.96
5990 8521 0.873054 AGGTCCGTATCTATCGCACG 59.127 55.000 0.00 0.00 35.50 5.34
6305 10258 0.377554 CATCGTCGTCGTAGCTCCTT 59.622 55.000 1.33 0.00 38.33 3.36
6443 10404 4.280929 ACTTGTGTTGCTTTTATTCTCCCC 59.719 41.667 0.00 0.00 0.00 4.81
6472 10433 9.040939 GCTATTGATTTATTAATTTGCCCGTTT 57.959 29.630 0.00 0.00 0.00 3.60
6478 10439 3.735237 TTAATTTGCCCGTTTTGCTCA 57.265 38.095 0.00 0.00 0.00 4.26
6482 10443 2.147436 TTGCCCGTTTTGCTCATTTC 57.853 45.000 0.00 0.00 0.00 2.17
6536 10497 5.956642 TGTAAACCCTCACTTTGTTTGTTC 58.043 37.500 0.00 0.00 34.33 3.18
6543 10504 4.282068 CTCACTTTGTTTGTTCGACCATG 58.718 43.478 0.00 0.00 0.00 3.66
6563 10524 2.826128 TGTCGACTATTTGGAGAGCTGT 59.174 45.455 17.92 0.00 0.00 4.40
6581 10542 7.308435 AGAGCTGTACACAAAATATTTGAAGC 58.692 34.615 9.62 9.33 0.00 3.86
6615 10576 3.069586 CGTTGCCCCTCTCATCTATGTTA 59.930 47.826 0.00 0.00 0.00 2.41
6617 10578 5.625150 GTTGCCCCTCTCATCTATGTTAAT 58.375 41.667 0.00 0.00 0.00 1.40
6665 10627 9.859427 TGATTCATTCAAAATATGTGAAGTTCC 57.141 29.630 0.00 0.00 38.34 3.62
6685 10647 5.118729 TCCAGGTTTGTCCTAAGTCAAAA 57.881 39.130 0.00 0.00 46.24 2.44
6689 10651 6.265422 CCAGGTTTGTCCTAAGTCAAAAATCT 59.735 38.462 0.00 0.00 46.24 2.40
6690 10652 7.201911 CCAGGTTTGTCCTAAGTCAAAAATCTT 60.202 37.037 0.00 0.00 46.24 2.40
6718 10680 1.842052 TGACTAGTATGTGGCGTGGA 58.158 50.000 0.00 0.00 0.00 4.02
6741 10703 9.474920 TGGAAAATTGTTTGATGTTACATCTTC 57.525 29.630 23.48 15.83 0.00 2.87
6753 10715 4.458989 TGTTACATCTTCTTTGCATGTCCC 59.541 41.667 0.00 0.00 32.88 4.46
6763 10725 0.540133 TGCATGTCCCATGTTGCACT 60.540 50.000 6.13 0.00 39.98 4.40
6766 10728 2.428171 GCATGTCCCATGTTGCACTATT 59.572 45.455 6.13 0.00 35.22 1.73
6771 10733 4.343526 TGTCCCATGTTGCACTATTTGTTT 59.656 37.500 0.00 0.00 0.00 2.83
6772 10734 4.685628 GTCCCATGTTGCACTATTTGTTTG 59.314 41.667 0.00 0.00 0.00 2.93
6808 10770 3.075884 GCATCAACACCCAAATTGCAAT 58.924 40.909 5.99 5.99 0.00 3.56
6815 10779 6.426328 TCAACACCCAAATTGCAATTTCATAC 59.574 34.615 29.92 0.00 36.52 2.39
6823 10787 4.707030 TTGCAATTTCATACTGCAGAGG 57.293 40.909 23.35 9.21 46.08 3.69
6829 10793 7.093814 TGCAATTTCATACTGCAGAGGTATTTT 60.094 33.333 23.35 3.58 41.01 1.82
6831 10795 8.461222 CAATTTCATACTGCAGAGGTATTTTGA 58.539 33.333 23.35 4.75 0.00 2.69
6853 10817 0.819582 GGGATGGATGCACTGTTTGG 59.180 55.000 0.00 0.00 0.00 3.28
6856 10820 2.618816 GGATGGATGCACTGTTTGGAGA 60.619 50.000 0.00 0.00 0.00 3.71
6860 10824 3.084039 GGATGCACTGTTTGGAGAATGA 58.916 45.455 0.00 0.00 0.00 2.57
6864 10828 4.910195 TGCACTGTTTGGAGAATGACTAT 58.090 39.130 0.00 0.00 0.00 2.12
6867 10831 6.088824 GCACTGTTTGGAGAATGACTATTTG 58.911 40.000 0.00 0.00 0.00 2.32
6868 10832 6.615088 CACTGTTTGGAGAATGACTATTTGG 58.385 40.000 0.00 0.00 0.00 3.28
6873 10837 4.464008 TGGAGAATGACTATTTGGGCATC 58.536 43.478 0.00 0.00 0.00 3.91
6874 10838 4.166725 TGGAGAATGACTATTTGGGCATCT 59.833 41.667 0.00 0.00 0.00 2.90
6878 10842 3.998913 TGACTATTTGGGCATCTGACA 57.001 42.857 0.00 0.00 0.00 3.58
6911 10875 2.874701 GTTCTGTGTGATTGCAGAGTGT 59.125 45.455 0.00 0.00 41.93 3.55
6915 10879 3.130633 TGTGTGATTGCAGAGTGTGTAC 58.869 45.455 0.00 0.00 0.00 2.90
6926 10891 1.798223 GAGTGTGTACGCATGCTTGAA 59.202 47.619 17.13 0.00 0.00 2.69
6934 10899 0.780002 CGCATGCTTGAAGTTTGTGC 59.220 50.000 17.13 0.00 0.00 4.57
6938 10903 0.380378 TGCTTGAAGTTTGTGCGACC 59.620 50.000 0.00 0.00 0.00 4.79
6948 10913 2.054687 TTGTGCGACCAAGTACTACG 57.945 50.000 0.00 1.65 0.00 3.51
6949 10914 0.953727 TGTGCGACCAAGTACTACGT 59.046 50.000 0.00 0.00 0.00 3.57
6950 10915 1.337703 TGTGCGACCAAGTACTACGTT 59.662 47.619 0.00 0.00 0.00 3.99
6951 10916 1.717645 GTGCGACCAAGTACTACGTTG 59.282 52.381 0.00 0.00 0.00 4.10
6952 10917 1.337703 TGCGACCAAGTACTACGTTGT 59.662 47.619 7.95 7.95 0.00 3.32
6953 10918 2.551887 TGCGACCAAGTACTACGTTGTA 59.448 45.455 5.73 5.73 0.00 2.41
6954 10919 3.191162 TGCGACCAAGTACTACGTTGTAT 59.809 43.478 12.85 0.00 0.00 2.29
6955 10920 4.168760 GCGACCAAGTACTACGTTGTATT 58.831 43.478 12.85 6.26 0.00 1.89
6956 10921 5.106357 TGCGACCAAGTACTACGTTGTATTA 60.106 40.000 12.85 0.00 0.00 0.98
6957 10922 5.973565 GCGACCAAGTACTACGTTGTATTAT 59.026 40.000 12.85 0.68 0.00 1.28
6958 10923 7.132213 GCGACCAAGTACTACGTTGTATTATA 58.868 38.462 12.85 0.00 0.00 0.98
6959 10924 7.805071 GCGACCAAGTACTACGTTGTATTATAT 59.195 37.037 12.85 0.38 0.00 0.86
6960 10925 9.110617 CGACCAAGTACTACGTTGTATTATATG 57.889 37.037 12.85 4.86 0.00 1.78
6961 10926 9.403110 GACCAAGTACTACGTTGTATTATATGG 57.597 37.037 12.85 14.31 0.00 2.74
6962 10927 8.362639 ACCAAGTACTACGTTGTATTATATGGG 58.637 37.037 18.65 13.47 0.00 4.00
6963 10928 8.579006 CCAAGTACTACGTTGTATTATATGGGA 58.421 37.037 12.85 0.00 0.00 4.37
6966 10931 8.746530 AGTACTACGTTGTATTATATGGGATGG 58.253 37.037 12.85 0.00 0.00 3.51
6967 10932 7.549147 ACTACGTTGTATTATATGGGATGGT 57.451 36.000 0.00 0.00 0.00 3.55
6968 10933 7.970102 ACTACGTTGTATTATATGGGATGGTT 58.030 34.615 0.00 0.00 0.00 3.67
6969 10934 8.434392 ACTACGTTGTATTATATGGGATGGTTT 58.566 33.333 0.00 0.00 0.00 3.27
6970 10935 9.932207 CTACGTTGTATTATATGGGATGGTTTA 57.068 33.333 0.00 0.00 0.00 2.01
6972 10937 9.226606 ACGTTGTATTATATGGGATGGTTTATG 57.773 33.333 0.00 0.00 0.00 1.90
6973 10938 9.226606 CGTTGTATTATATGGGATGGTTTATGT 57.773 33.333 0.00 0.00 0.00 2.29
6975 10940 9.747898 TTGTATTATATGGGATGGTTTATGTCC 57.252 33.333 0.00 0.00 0.00 4.02
6976 10941 9.122954 TGTATTATATGGGATGGTTTATGTCCT 57.877 33.333 0.00 0.00 32.55 3.85
6977 10942 9.975218 GTATTATATGGGATGGTTTATGTCCTT 57.025 33.333 0.00 0.00 32.55 3.36
6978 10943 8.884124 ATTATATGGGATGGTTTATGTCCTTG 57.116 34.615 0.00 0.00 32.55 3.61
6979 10944 4.608170 ATGGGATGGTTTATGTCCTTGT 57.392 40.909 0.00 0.00 32.55 3.16
6980 10945 3.696045 TGGGATGGTTTATGTCCTTGTG 58.304 45.455 0.00 0.00 32.55 3.33
6981 10946 2.427095 GGGATGGTTTATGTCCTTGTGC 59.573 50.000 0.00 0.00 32.55 4.57
6982 10947 3.088532 GGATGGTTTATGTCCTTGTGCA 58.911 45.455 0.00 0.00 0.00 4.57
6983 10948 3.129287 GGATGGTTTATGTCCTTGTGCAG 59.871 47.826 0.00 0.00 0.00 4.41
6984 10949 2.513753 TGGTTTATGTCCTTGTGCAGG 58.486 47.619 0.00 0.00 45.64 4.85
6999 10964 6.801539 TTGTGCAGGACTATTCTTAAGTTG 57.198 37.500 1.63 0.00 0.00 3.16
7000 10965 5.245531 TGTGCAGGACTATTCTTAAGTTGG 58.754 41.667 1.63 0.00 0.00 3.77
7001 10966 5.221843 TGTGCAGGACTATTCTTAAGTTGGT 60.222 40.000 1.63 0.00 0.00 3.67
7002 10967 5.705905 GTGCAGGACTATTCTTAAGTTGGTT 59.294 40.000 1.63 0.00 0.00 3.67
7008 10973 7.182930 AGGACTATTCTTAAGTTGGTTCAGGAT 59.817 37.037 1.63 0.00 0.00 3.24
7026 10991 3.399181 GACCGGCTGGGGATGTCA 61.399 66.667 18.00 0.00 41.60 3.58
7027 10992 3.391665 GACCGGCTGGGGATGTCAG 62.392 68.421 18.00 0.00 41.60 3.51
7029 10994 4.181010 CGGCTGGGGATGTCAGGG 62.181 72.222 0.00 0.00 33.16 4.45
7030 10995 2.692368 GGCTGGGGATGTCAGGGA 60.692 66.667 0.00 0.00 33.16 4.20
7031 10996 2.592308 GCTGGGGATGTCAGGGAC 59.408 66.667 0.00 0.00 33.16 4.46
7054 11019 7.432838 GGACGACTCTGATAATCTGTTTACTTC 59.567 40.741 0.00 0.00 0.00 3.01
7057 11022 8.622157 CGACTCTGATAATCTGTTTACTTCCTA 58.378 37.037 0.00 0.00 0.00 2.94
7058 11023 9.959749 GACTCTGATAATCTGTTTACTTCCTAG 57.040 37.037 0.00 0.00 0.00 3.02
7064 11029 4.820894 TCTGTTTACTTCCTAGCCTTCC 57.179 45.455 0.00 0.00 0.00 3.46
7112 11300 6.959361 TGAGAAGCTTGACATGAAAGTTAAC 58.041 36.000 2.10 0.00 0.00 2.01
7113 11301 6.767902 TGAGAAGCTTGACATGAAAGTTAACT 59.232 34.615 2.10 1.12 0.00 2.24
7114 11302 6.963796 AGAAGCTTGACATGAAAGTTAACTG 58.036 36.000 9.34 0.00 0.00 3.16
7115 11303 5.695851 AGCTTGACATGAAAGTTAACTGG 57.304 39.130 9.34 0.00 0.00 4.00
7127 11315 3.007635 AGTTAACTGGTAATCCGCAAGC 58.992 45.455 7.48 0.00 36.30 4.01
7128 11316 2.745281 GTTAACTGGTAATCCGCAAGCA 59.255 45.455 0.00 0.00 36.30 3.91
7134 11322 0.096454 GTAATCCGCAAGCAACGACC 59.904 55.000 0.00 0.00 0.00 4.79
7139 11327 1.666553 CGCAAGCAACGACCCACTA 60.667 57.895 0.00 0.00 0.00 2.74
7140 11328 1.019278 CGCAAGCAACGACCCACTAT 61.019 55.000 0.00 0.00 0.00 2.12
7142 11330 1.539827 GCAAGCAACGACCCACTATTT 59.460 47.619 0.00 0.00 0.00 1.40
7143 11331 2.030274 GCAAGCAACGACCCACTATTTT 60.030 45.455 0.00 0.00 0.00 1.82
7170 11358 7.259161 TGGTAAACATTGTACAAAAAGTCCAC 58.741 34.615 13.23 11.70 0.00 4.02
7178 11366 6.371809 TGTACAAAAAGTCCACTCAATGTC 57.628 37.500 0.00 0.00 0.00 3.06
7181 11369 4.339247 ACAAAAAGTCCACTCAATGTCTGG 59.661 41.667 0.00 0.00 0.00 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
53 54 2.792196 CGTGGCGATGGATTTGATTGTG 60.792 50.000 0.00 0.00 0.00 3.33
74 75 3.670377 GTTTGAGTGGGGGCGTGC 61.670 66.667 0.00 0.00 0.00 5.34
75 76 2.983592 GGTTTGAGTGGGGGCGTG 60.984 66.667 0.00 0.00 0.00 5.34
76 77 4.280019 GGGTTTGAGTGGGGGCGT 62.280 66.667 0.00 0.00 0.00 5.68
77 78 4.278513 TGGGTTTGAGTGGGGGCG 62.279 66.667 0.00 0.00 0.00 6.13
78 79 2.600470 GTGGGTTTGAGTGGGGGC 60.600 66.667 0.00 0.00 0.00 5.80
173 194 4.097361 GGGAGCGAACCCCTGACC 62.097 72.222 6.13 0.00 43.81 4.02
375 419 0.035458 ACAGACCAAAAGAGCTCCGG 59.965 55.000 10.93 8.79 0.00 5.14
376 420 1.884235 AACAGACCAAAAGAGCTCCG 58.116 50.000 10.93 0.00 0.00 4.63
445 489 5.956068 TCTATGTATGCAACAACAAAGCA 57.044 34.783 0.00 0.00 42.70 3.91
449 493 5.448496 GCGGAATCTATGTATGCAACAACAA 60.448 40.000 0.00 0.00 42.70 2.83
450 494 4.035091 GCGGAATCTATGTATGCAACAACA 59.965 41.667 0.00 0.00 42.70 3.33
451 495 4.527564 GCGGAATCTATGTATGCAACAAC 58.472 43.478 0.00 0.00 42.70 3.32
508 552 3.383761 GTCAATCAACCAACCAGCAAAG 58.616 45.455 0.00 0.00 0.00 2.77
578 627 2.200067 CATCGCTGTCAGAATCACTCC 58.800 52.381 3.32 0.00 0.00 3.85
586 635 1.472878 GAGGTACACATCGCTGTCAGA 59.527 52.381 3.32 0.00 31.62 3.27
588 637 0.530744 GGAGGTACACATCGCTGTCA 59.469 55.000 0.00 0.00 31.62 3.58
626 675 0.318762 GCCCCCACGCAATAAACAAA 59.681 50.000 0.00 0.00 0.00 2.83
802 899 1.766143 GCTAATTGGAGAGCACGCGG 61.766 60.000 12.47 0.00 38.62 6.46
803 900 1.638467 GCTAATTGGAGAGCACGCG 59.362 57.895 3.53 3.53 38.62 6.01
813 914 2.386661 ACAGACAGACCGCTAATTGG 57.613 50.000 0.00 0.00 0.00 3.16
837 942 5.680619 ACGGCTTTACAAATAGATGATCCA 58.319 37.500 0.00 0.00 0.00 3.41
847 952 1.161843 CCACCGACGGCTTTACAAAT 58.838 50.000 15.39 0.00 0.00 2.32
942 1047 6.148480 AGCAAGTTGTGTTAGATCAGATTCAC 59.852 38.462 4.48 0.00 0.00 3.18
960 1065 7.270757 TGTAAATATGTCACAACAGCAAGTT 57.729 32.000 0.00 0.00 42.42 2.66
989 1097 0.108472 CTTCTCCATCGCTGCTGTCA 60.108 55.000 0.00 0.00 0.00 3.58
1013 1121 4.426112 CGTCGCTGGAGCTGCTCA 62.426 66.667 28.95 15.11 39.32 4.26
1038 1146 3.693085 TCCTAACACGACCTACATGAGAC 59.307 47.826 0.00 0.00 0.00 3.36
1120 1228 0.693049 ACGACATGGAAAGGAAGCCT 59.307 50.000 0.00 0.00 33.87 4.58
1126 1234 4.497473 TTTGCTAAACGACATGGAAAGG 57.503 40.909 0.00 0.00 0.00 3.11
1160 1268 1.337260 ACACGCTGCCTGAGAAACTAG 60.337 52.381 5.65 0.00 0.00 2.57
1219 1327 7.710896 AGAAAAGGATCAACAACTTTCTCTTG 58.289 34.615 0.00 0.00 33.64 3.02
1303 1416 5.452341 TTTTACATTGGGGGTTGGTTTTT 57.548 34.783 0.00 0.00 0.00 1.94
1327 1443 4.136796 TCTTTCTGCACATTGTAAGCACT 58.863 39.130 0.00 0.00 34.13 4.40
1334 1450 6.455360 TCTTTCTTTCTTTCTGCACATTGT 57.545 33.333 0.00 0.00 0.00 2.71
1335 1451 9.467258 TTTATCTTTCTTTCTTTCTGCACATTG 57.533 29.630 0.00 0.00 0.00 2.82
1379 1495 9.767684 TGAACAAGCGATAAACAAATATAACAG 57.232 29.630 0.00 0.00 0.00 3.16
1386 1502 7.272515 CGGTAAATGAACAAGCGATAAACAAAT 59.727 33.333 0.00 0.00 36.28 2.32
1396 1512 3.262135 ACAACGGTAAATGAACAAGCG 57.738 42.857 0.00 0.00 39.81 4.68
1404 1520 7.605410 AGTACTCCATTAACAACGGTAAATG 57.395 36.000 0.00 0.00 0.00 2.32
1478 2285 7.951530 AAAAATCATGGTAGTCAGCAAAAAG 57.048 32.000 0.00 0.00 35.40 2.27
1537 2346 4.644685 CCATTTGTTCTATTCCCATCGGTT 59.355 41.667 0.00 0.00 0.00 4.44
1553 2362 2.086610 AGCAAAGTGGGTCCATTTGT 57.913 45.000 17.57 8.70 36.52 2.83
1555 2364 2.365293 GACAAGCAAAGTGGGTCCATTT 59.635 45.455 0.00 0.00 0.00 2.32
1726 2535 5.551233 TCACTGGATTTTCTGAGTAGGTTG 58.449 41.667 0.00 0.00 0.00 3.77
1780 2589 7.970671 CAGAATGACTTGGCACCTACCAATTT 61.971 42.308 0.00 0.00 44.15 1.82
1841 2650 1.065102 GGCAGCTACATCGTCGAGTTA 59.935 52.381 0.00 0.00 0.00 2.24
1846 2655 1.878522 GGTGGCAGCTACATCGTCG 60.879 63.158 11.51 0.00 0.00 5.12
1849 2658 0.659427 CAATGGTGGCAGCTACATCG 59.341 55.000 18.53 0.00 0.00 3.84
2208 3724 7.649306 GCCAAGCAGACCATAAATGTAATAAAG 59.351 37.037 0.00 0.00 0.00 1.85
2211 3734 6.364701 AGCCAAGCAGACCATAAATGTAATA 58.635 36.000 0.00 0.00 0.00 0.98
2214 3737 4.235079 AGCCAAGCAGACCATAAATGTA 57.765 40.909 0.00 0.00 0.00 2.29
2310 3833 4.431416 TTTCCACTCTAGGAGTTTGCAA 57.569 40.909 0.00 0.00 41.37 4.08
2311 3834 4.640771 ATTTCCACTCTAGGAGTTTGCA 57.359 40.909 0.00 0.00 41.37 4.08
2312 3835 7.631717 AAATATTTCCACTCTAGGAGTTTGC 57.368 36.000 0.00 0.00 41.37 3.68
2462 3987 2.835475 GCTTTTGCGTAACACATTGC 57.165 45.000 0.00 0.00 34.86 3.56
2482 4007 6.470557 AATTGCAAAATCCAAAGACAATCG 57.529 33.333 1.71 0.00 0.00 3.34
2484 4009 7.571080 ACAAATTGCAAAATCCAAAGACAAT 57.429 28.000 1.71 0.00 0.00 2.71
2517 4042 5.473504 GGAGGAATGTCTAAGCAAAACTCAA 59.526 40.000 0.00 0.00 0.00 3.02
2811 4336 5.368145 ACATTTCACTCAAGTCAGCAAGTA 58.632 37.500 0.00 0.00 0.00 2.24
2875 4400 8.880878 ACTTGGATGTTTAAAATACACCAAAC 57.119 30.769 0.00 0.00 36.82 2.93
2906 4431 6.031751 ACAACTTCAGGTGCTTTTTAAACA 57.968 33.333 0.00 0.00 0.00 2.83
2939 4464 5.774690 TGAACAAGAAATTAGGCACCTTGAT 59.225 36.000 0.00 0.00 38.02 2.57
2945 4470 3.670627 CGGCTGAACAAGAAATTAGGCAC 60.671 47.826 0.00 0.00 0.00 5.01
2977 4504 2.304180 AGGTCCAGGACTTCATGAACAG 59.696 50.000 19.57 0.00 32.47 3.16
2994 4523 6.593268 AACTCCTAGTAAGTTGAAGAGGTC 57.407 41.667 6.90 0.00 35.68 3.85
3038 5094 8.530311 TGATATTACCACTGTAACCGAAGTAAA 58.470 33.333 0.00 0.00 39.66 2.01
3136 5207 4.166144 TCTTTTCTTTCTGGTGAGGACCTT 59.834 41.667 0.00 0.00 43.58 3.50
3219 5321 8.518430 AACCACATATATCAAACAGCAACATA 57.482 30.769 0.00 0.00 0.00 2.29
3252 5395 8.989653 AAAGTAGCTTAACTCAAGTCAGATAC 57.010 34.615 0.00 8.59 36.55 2.24
3378 5522 6.946340 TGTATGGAGTTTGTCAGATACACAT 58.054 36.000 0.00 0.00 38.00 3.21
3383 5527 8.078060 TGAAGATGTATGGAGTTTGTCAGATA 57.922 34.615 0.00 0.00 0.00 1.98
3468 5615 6.451064 AGAAAGAACCCAAATAAATAGGCG 57.549 37.500 0.00 0.00 0.00 5.52
3589 5736 4.929146 AAGTACATAAACCAGGGCTTCT 57.071 40.909 0.00 0.00 0.00 2.85
3738 5899 5.244626 ACATTTGCTAACTGCCAGAGAAAAT 59.755 36.000 0.00 0.00 42.00 1.82
3743 5904 5.449588 CCATTACATTTGCTAACTGCCAGAG 60.450 44.000 0.00 0.00 42.00 3.35
3744 5905 4.398988 CCATTACATTTGCTAACTGCCAGA 59.601 41.667 0.00 0.00 42.00 3.86
3745 5906 4.440525 CCCATTACATTTGCTAACTGCCAG 60.441 45.833 0.00 0.00 42.00 4.85
3746 5907 3.446873 CCCATTACATTTGCTAACTGCCA 59.553 43.478 0.00 0.00 42.00 4.92
3747 5908 3.447229 ACCCATTACATTTGCTAACTGCC 59.553 43.478 0.00 0.00 42.00 4.85
3814 5975 7.568349 TCCAACTAGCAGTCATATTCTGAAAT 58.432 34.615 8.37 0.00 35.07 2.17
3830 5991 6.687604 ACACCAATTTGTTAATCCAACTAGC 58.312 36.000 0.00 0.00 38.05 3.42
3831 5992 7.176690 AGGACACCAATTTGTTAATCCAACTAG 59.823 37.037 6.98 0.00 38.05 2.57
3855 6016 8.925161 TGAAAACTAAGAACAAATTCAACAGG 57.075 30.769 0.00 0.00 37.29 4.00
3879 6040 8.096414 ACAGGTCCTGAAAATATTTCCAAAATG 58.904 33.333 26.18 0.00 35.18 2.32
3979 6141 7.521669 AGGATATCTTTCTTCTTACCCAATGG 58.478 38.462 2.05 0.00 37.80 3.16
4058 6220 9.945633 AGGGGGCTTATAAATTTGAACTTTATA 57.054 29.630 0.00 4.29 32.51 0.98
4118 6280 3.181490 GGCAGTTTTGAGGTCGAGTTTTT 60.181 43.478 0.00 0.00 0.00 1.94
4119 6281 2.357952 GGCAGTTTTGAGGTCGAGTTTT 59.642 45.455 0.00 0.00 0.00 2.43
4120 6282 1.947456 GGCAGTTTTGAGGTCGAGTTT 59.053 47.619 0.00 0.00 0.00 2.66
4121 6283 1.141053 AGGCAGTTTTGAGGTCGAGTT 59.859 47.619 0.00 0.00 0.00 3.01
4122 6284 0.759346 AGGCAGTTTTGAGGTCGAGT 59.241 50.000 0.00 0.00 0.00 4.18
4123 6285 1.270305 TGAGGCAGTTTTGAGGTCGAG 60.270 52.381 0.00 0.00 0.00 4.04
4124 6286 0.756294 TGAGGCAGTTTTGAGGTCGA 59.244 50.000 0.00 0.00 0.00 4.20
4125 6287 0.868406 GTGAGGCAGTTTTGAGGTCG 59.132 55.000 0.00 0.00 0.00 4.79
4126 6288 1.967319 TGTGAGGCAGTTTTGAGGTC 58.033 50.000 0.00 0.00 0.00 3.85
4127 6289 2.024414 GTTGTGAGGCAGTTTTGAGGT 58.976 47.619 0.00 0.00 0.00 3.85
4128 6290 1.338020 GGTTGTGAGGCAGTTTTGAGG 59.662 52.381 0.00 0.00 0.00 3.86
4129 6291 1.002468 CGGTTGTGAGGCAGTTTTGAG 60.002 52.381 0.00 0.00 0.00 3.02
4130 6292 1.021202 CGGTTGTGAGGCAGTTTTGA 58.979 50.000 0.00 0.00 0.00 2.69
4131 6293 0.738389 ACGGTTGTGAGGCAGTTTTG 59.262 50.000 0.00 0.00 0.00 2.44
4132 6294 1.134175 CAACGGTTGTGAGGCAGTTTT 59.866 47.619 12.66 0.00 0.00 2.43
4133 6295 0.738389 CAACGGTTGTGAGGCAGTTT 59.262 50.000 12.66 0.00 0.00 2.66
4134 6296 1.724582 GCAACGGTTGTGAGGCAGTT 61.725 55.000 20.92 0.00 0.00 3.16
4135 6297 2.186826 GCAACGGTTGTGAGGCAGT 61.187 57.895 20.92 0.00 0.00 4.40
4136 6298 2.639286 GCAACGGTTGTGAGGCAG 59.361 61.111 20.92 0.00 0.00 4.85
4137 6299 2.904866 GGCAACGGTTGTGAGGCA 60.905 61.111 20.92 0.00 32.11 4.75
4138 6300 2.594592 AGGCAACGGTTGTGAGGC 60.595 61.111 20.92 8.37 46.39 4.70
4139 6301 1.227823 TCAGGCAACGGTTGTGAGG 60.228 57.895 20.92 9.50 46.39 3.86
4140 6302 0.532862 ACTCAGGCAACGGTTGTGAG 60.533 55.000 26.89 26.89 46.39 3.51
4141 6303 0.531974 GACTCAGGCAACGGTTGTGA 60.532 55.000 20.92 16.04 46.39 3.58
4142 6304 1.507141 GGACTCAGGCAACGGTTGTG 61.507 60.000 20.92 12.87 46.39 3.33
4143 6305 1.227853 GGACTCAGGCAACGGTTGT 60.228 57.895 20.92 0.99 46.39 3.32
4144 6306 0.817634 TTGGACTCAGGCAACGGTTG 60.818 55.000 16.35 16.35 46.39 3.77
4145 6307 0.106918 TTTGGACTCAGGCAACGGTT 60.107 50.000 0.00 0.00 46.39 4.44
4146 6308 0.106918 TTTTGGACTCAGGCAACGGT 60.107 50.000 0.00 0.00 46.39 4.83
4147 6309 1.028905 TTTTTGGACTCAGGCAACGG 58.971 50.000 0.00 0.00 46.39 4.44
4168 6330 4.094830 ACGGTTTTGAGGTCAAGGTTAT 57.905 40.909 0.00 0.00 37.15 1.89
4169 6331 3.564053 ACGGTTTTGAGGTCAAGGTTA 57.436 42.857 0.00 0.00 37.15 2.85
4175 6337 2.131776 ACCAAACGGTTTTGAGGTCA 57.868 45.000 11.20 0.00 44.38 4.02
4179 6341 2.577449 AGCAACCAAACGGTTTTGAG 57.423 45.000 11.20 3.16 44.73 3.02
4180 6342 3.444388 AGTTAGCAACCAAACGGTTTTGA 59.556 39.130 11.20 0.00 44.73 2.69
4197 6359 5.160641 GTCTTGCTGAAGAGTGAGAGTTAG 58.839 45.833 0.00 0.00 38.95 2.34
4240 6402 8.522178 AGAACGAAACTAGAGTAAATTGACTG 57.478 34.615 0.00 0.00 0.00 3.51
4263 6425 1.292223 GCCACAGTAGCCACGAAGA 59.708 57.895 0.00 0.00 0.00 2.87
4275 6437 0.030504 TGCATGTCAAAACGCCACAG 59.969 50.000 0.00 0.00 0.00 3.66
4308 6470 2.815503 TCTGCTGATTGGTTGACATGTG 59.184 45.455 1.15 0.00 0.00 3.21
4349 6511 2.642311 ACAACATGTAGTCCCACCATCA 59.358 45.455 0.00 0.00 0.00 3.07
4394 6556 3.320673 AGGAGACATGGAGAACGAAAC 57.679 47.619 0.00 0.00 0.00 2.78
4409 6571 1.539869 AAGGGCAGCAGGAAGGAGA 60.540 57.895 0.00 0.00 0.00 3.71
4444 6609 2.505777 CTGCTGCGACCACTCTCG 60.506 66.667 0.00 0.00 36.70 4.04
4490 6964 2.185004 AAGGAATGGAGTCAACACCG 57.815 50.000 0.00 0.00 0.00 4.94
4511 6985 2.046023 CTGTTCAGGCGCCATGGA 60.046 61.111 31.54 20.18 0.00 3.41
4513 6987 1.798735 CTTCTGTTCAGGCGCCATG 59.201 57.895 31.54 22.97 0.00 3.66
4575 7056 4.728110 TGCCGCTTCTGCCATGCT 62.728 61.111 0.00 0.00 35.36 3.79
4576 7057 3.695022 CTTGCCGCTTCTGCCATGC 62.695 63.158 0.00 0.00 35.36 4.06
4578 7059 0.895100 TTTCTTGCCGCTTCTGCCAT 60.895 50.000 0.00 0.00 35.36 4.40
4579 7060 1.518056 CTTTCTTGCCGCTTCTGCCA 61.518 55.000 0.00 0.00 35.36 4.92
4580 7061 1.211190 CTTTCTTGCCGCTTCTGCC 59.789 57.895 0.00 0.00 35.36 4.85
4581 7062 0.593128 TTCTTTCTTGCCGCTTCTGC 59.407 50.000 0.00 0.00 0.00 4.26
4582 7063 2.746362 AGATTCTTTCTTGCCGCTTCTG 59.254 45.455 0.00 0.00 0.00 3.02
4615 7097 1.150081 CCATCTGGATGCAGGACCC 59.850 63.158 14.84 0.00 37.49 4.46
4642 7124 5.420421 CAGAGAACTCCATTACTCCTGAGAA 59.580 44.000 0.22 0.00 0.00 2.87
4653 7135 2.180276 ACTACCGCAGAGAACTCCATT 58.820 47.619 0.00 0.00 0.00 3.16
4704 7186 6.925718 CACTTCTAATCTTCAACTGACACAGA 59.074 38.462 5.76 0.00 35.18 3.41
4705 7187 6.925718 TCACTTCTAATCTTCAACTGACACAG 59.074 38.462 0.00 0.00 37.52 3.66
4750 7232 9.270640 CTTTCCAATTATCAAGAGGAGTCTATG 57.729 37.037 0.00 0.00 30.45 2.23
4792 7274 6.516355 CGTGACATACTTTTTCTTGATTGTCG 59.484 38.462 0.00 0.00 36.03 4.35
4855 7337 5.825593 ACTGTTGGGAGAAAGACAGATAA 57.174 39.130 9.10 0.00 41.46 1.75
4880 7362 8.915057 ATTAACCTTGATTCACATCAGGATAG 57.085 34.615 8.75 0.00 40.66 2.08
4895 7385 4.650972 AGTGCCCTGTTATTAACCTTGA 57.349 40.909 4.17 0.00 0.00 3.02
5000 7492 3.322191 TTTGACCTTACCCAAAAGCCT 57.678 42.857 0.00 0.00 30.29 4.58
5050 7542 3.275617 TCACGGACCAAAATGGGATAG 57.724 47.619 0.87 0.00 43.37 2.08
5063 7557 2.814280 TCTCTGAACCTTTCACGGAC 57.186 50.000 0.00 0.00 35.46 4.79
5067 7561 6.372659 TGATTATGCTTCTCTGAACCTTTCAC 59.627 38.462 0.00 0.00 35.46 3.18
5072 7566 4.472833 ACCTGATTATGCTTCTCTGAACCT 59.527 41.667 0.00 0.00 0.00 3.50
5081 7581 5.252969 TGCAAATGACCTGATTATGCTTC 57.747 39.130 0.00 0.00 33.66 3.86
5130 7630 9.350951 TGATGGATACGAGAAAAGAATAGTCTA 57.649 33.333 0.00 0.00 42.51 2.59
5235 7738 7.844009 TCCATAAACTTCGTAAAGATGGTACT 58.156 34.615 0.00 0.00 36.48 2.73
5265 7773 9.553064 AAGTAATCAGATAAAGTTCATGGCTAG 57.447 33.333 0.00 0.00 0.00 3.42
5450 7958 2.388735 TCCCAGAGACAGCAACGATAT 58.611 47.619 0.00 0.00 0.00 1.63
5498 8009 8.767478 AATTTGAAGATGTTAATGGAAGCAAG 57.233 30.769 0.00 0.00 0.00 4.01
5596 8110 5.476599 AGCCAGCATGTAAATGTTCTTTGTA 59.523 36.000 0.00 0.00 0.00 2.41
5646 8160 6.231211 AGGTACAAGTAGAACCAAGATGTTG 58.769 40.000 0.00 0.00 35.64 3.33
5665 8179 9.736023 CATGCTTCCTCATAAAAATTAAGGTAC 57.264 33.333 0.00 0.00 0.00 3.34
5776 8290 6.587226 TCATTCAACTTTGTGCATAATCAAGC 59.413 34.615 0.00 0.00 0.00 4.01
5830 8347 5.366768 AGCTAAACTGCACAGGATAGGAATA 59.633 40.000 2.21 0.00 34.99 1.75
5877 8407 4.078922 TGCCATAACCATCTGGGGAAAATA 60.079 41.667 0.54 0.00 42.91 1.40
5990 8521 4.301637 AGATCAAACGAAAACCAACCAC 57.698 40.909 0.00 0.00 0.00 4.16
6073 8608 6.380274 ACGTCAGGTTTCTTAAGATCTGGATA 59.620 38.462 20.88 8.07 0.00 2.59
6305 10258 2.039746 CACTCCCATCACAAGGGTACAA 59.960 50.000 0.00 0.00 46.82 2.41
6443 10404 7.329226 CGGGCAAATTAATAAATCAATAGCAGG 59.671 37.037 0.00 0.00 0.00 4.85
6472 10433 4.112634 CTCCGATTACGAGAAATGAGCAA 58.887 43.478 0.00 0.00 42.66 3.91
6478 10439 5.531122 TTCCATCTCCGATTACGAGAAAT 57.469 39.130 0.00 0.00 42.66 2.17
6482 10443 4.683832 AGTTTTCCATCTCCGATTACGAG 58.316 43.478 0.00 0.00 42.66 4.18
6543 10504 3.512033 ACAGCTCTCCAAATAGTCGAC 57.488 47.619 7.70 7.70 0.00 4.20
6563 10524 6.338214 TGCAGGCTTCAAATATTTTGTGTA 57.662 33.333 0.00 0.00 0.00 2.90
6581 10542 1.080569 GGCAACGGAAACATGCAGG 60.081 57.895 0.00 0.00 42.78 4.85
6689 10651 7.227116 ACGCCACATACTAGTCAAACTTAAAAA 59.773 33.333 0.00 0.00 0.00 1.94
6690 10652 6.707161 ACGCCACATACTAGTCAAACTTAAAA 59.293 34.615 0.00 0.00 0.00 1.52
6753 10715 9.404348 TGTATTACAAACAAATAGTGCAACATG 57.596 29.630 0.00 0.00 41.43 3.21
6763 10725 8.090831 TGCAAATGGCTGTATTACAAACAAATA 58.909 29.630 0.00 0.00 45.15 1.40
6766 10728 5.847304 TGCAAATGGCTGTATTACAAACAA 58.153 33.333 0.00 0.00 45.15 2.83
6771 10733 5.184671 TGTTGATGCAAATGGCTGTATTACA 59.815 36.000 0.00 0.00 45.15 2.41
6772 10734 5.516339 GTGTTGATGCAAATGGCTGTATTAC 59.484 40.000 0.00 0.00 45.15 1.89
6808 10770 7.994425 TTCAAAATACCTCTGCAGTATGAAA 57.006 32.000 14.67 0.00 39.69 2.69
6815 10779 4.335416 TCCCTTTCAAAATACCTCTGCAG 58.665 43.478 7.63 7.63 0.00 4.41
6823 10787 5.127682 AGTGCATCCATCCCTTTCAAAATAC 59.872 40.000 0.00 0.00 0.00 1.89
6829 10793 1.355381 ACAGTGCATCCATCCCTTTCA 59.645 47.619 0.00 0.00 0.00 2.69
6831 10795 2.564062 CAAACAGTGCATCCATCCCTTT 59.436 45.455 0.00 0.00 0.00 3.11
6853 10817 5.238214 GTCAGATGCCCAAATAGTCATTCTC 59.762 44.000 0.00 0.00 0.00 2.87
6856 10820 4.858850 TGTCAGATGCCCAAATAGTCATT 58.141 39.130 0.00 0.00 0.00 2.57
6860 10824 4.240881 ACATGTCAGATGCCCAAATAGT 57.759 40.909 0.00 0.00 0.00 2.12
6864 10828 2.874014 TGAACATGTCAGATGCCCAAA 58.126 42.857 0.00 0.00 0.00 3.28
6892 10856 2.158914 ACACACTCTGCAATCACACAGA 60.159 45.455 0.00 0.00 40.54 3.41
6893 10857 2.216046 ACACACTCTGCAATCACACAG 58.784 47.619 0.00 0.00 35.15 3.66
6894 10858 2.330440 ACACACTCTGCAATCACACA 57.670 45.000 0.00 0.00 0.00 3.72
6895 10859 2.155732 CGTACACACTCTGCAATCACAC 59.844 50.000 0.00 0.00 0.00 3.82
6896 10860 2.403259 CGTACACACTCTGCAATCACA 58.597 47.619 0.00 0.00 0.00 3.58
6897 10861 1.126846 GCGTACACACTCTGCAATCAC 59.873 52.381 0.00 0.00 0.00 3.06
6903 10867 1.016130 AGCATGCGTACACACTCTGC 61.016 55.000 13.01 0.66 0.00 4.26
6911 10875 2.616376 ACAAACTTCAAGCATGCGTACA 59.384 40.909 13.01 0.00 0.00 2.90
6915 10879 0.780002 GCACAAACTTCAAGCATGCG 59.220 50.000 13.01 0.00 0.00 4.73
6926 10891 2.614829 AGTACTTGGTCGCACAAACT 57.385 45.000 0.00 0.00 0.00 2.66
6934 10899 9.110617 CATATAATACAACGTAGTACTTGGTCG 57.889 37.037 0.00 4.41 45.00 4.79
6949 10914 9.747898 GGACATAAACCATCCCATATAATACAA 57.252 33.333 0.00 0.00 0.00 2.41
6950 10915 9.122954 AGGACATAAACCATCCCATATAATACA 57.877 33.333 0.00 0.00 32.47 2.29
6951 10916 9.975218 AAGGACATAAACCATCCCATATAATAC 57.025 33.333 0.00 0.00 32.47 1.89
6952 10917 9.973661 CAAGGACATAAACCATCCCATATAATA 57.026 33.333 0.00 0.00 32.47 0.98
6953 10918 8.456124 ACAAGGACATAAACCATCCCATATAAT 58.544 33.333 0.00 0.00 32.47 1.28
6954 10919 7.723616 CACAAGGACATAAACCATCCCATATAA 59.276 37.037 0.00 0.00 32.47 0.98
6955 10920 7.230747 CACAAGGACATAAACCATCCCATATA 58.769 38.462 0.00 0.00 32.47 0.86
6956 10921 6.070656 CACAAGGACATAAACCATCCCATAT 58.929 40.000 0.00 0.00 32.47 1.78
6957 10922 5.445069 CACAAGGACATAAACCATCCCATA 58.555 41.667 0.00 0.00 32.47 2.74
6958 10923 4.280819 CACAAGGACATAAACCATCCCAT 58.719 43.478 0.00 0.00 32.47 4.00
6959 10924 3.696045 CACAAGGACATAAACCATCCCA 58.304 45.455 0.00 0.00 32.47 4.37
6960 10925 2.427095 GCACAAGGACATAAACCATCCC 59.573 50.000 0.00 0.00 32.47 3.85
6961 10926 3.088532 TGCACAAGGACATAAACCATCC 58.911 45.455 0.00 0.00 0.00 3.51
6962 10927 4.361451 CTGCACAAGGACATAAACCATC 57.639 45.455 0.00 0.00 0.00 3.51
6975 10940 6.128172 CCAACTTAAGAATAGTCCTGCACAAG 60.128 42.308 10.09 0.00 0.00 3.16
6976 10941 5.705441 CCAACTTAAGAATAGTCCTGCACAA 59.295 40.000 10.09 0.00 0.00 3.33
6977 10942 5.221843 ACCAACTTAAGAATAGTCCTGCACA 60.222 40.000 10.09 0.00 0.00 4.57
6978 10943 5.246307 ACCAACTTAAGAATAGTCCTGCAC 58.754 41.667 10.09 0.00 0.00 4.57
6979 10944 5.499004 ACCAACTTAAGAATAGTCCTGCA 57.501 39.130 10.09 0.00 0.00 4.41
6980 10945 5.938125 TGAACCAACTTAAGAATAGTCCTGC 59.062 40.000 10.09 0.00 0.00 4.85
6981 10946 6.595716 CCTGAACCAACTTAAGAATAGTCCTG 59.404 42.308 10.09 0.00 0.00 3.86
6982 10947 6.500751 TCCTGAACCAACTTAAGAATAGTCCT 59.499 38.462 10.09 0.00 0.00 3.85
6983 10948 6.708285 TCCTGAACCAACTTAAGAATAGTCC 58.292 40.000 10.09 0.00 0.00 3.85
6984 10949 8.041323 TCATCCTGAACCAACTTAAGAATAGTC 58.959 37.037 10.09 1.75 0.00 2.59
6985 10950 7.824779 GTCATCCTGAACCAACTTAAGAATAGT 59.175 37.037 10.09 0.00 0.00 2.12
6986 10951 7.281100 GGTCATCCTGAACCAACTTAAGAATAG 59.719 40.741 10.09 0.00 0.00 1.73
6987 10952 7.110155 GGTCATCCTGAACCAACTTAAGAATA 58.890 38.462 10.09 0.00 0.00 1.75
6988 10953 5.946377 GGTCATCCTGAACCAACTTAAGAAT 59.054 40.000 10.09 0.00 0.00 2.40
6989 10954 5.313712 GGTCATCCTGAACCAACTTAAGAA 58.686 41.667 10.09 0.00 0.00 2.52
6990 10955 4.562757 CGGTCATCCTGAACCAACTTAAGA 60.563 45.833 10.09 0.00 27.88 2.10
6991 10956 3.684788 CGGTCATCCTGAACCAACTTAAG 59.315 47.826 0.00 0.00 27.88 1.85
6992 10957 3.558321 CCGGTCATCCTGAACCAACTTAA 60.558 47.826 0.00 0.00 27.88 1.85
6993 10958 2.027561 CCGGTCATCCTGAACCAACTTA 60.028 50.000 0.00 0.00 27.88 2.24
6994 10959 1.271379 CCGGTCATCCTGAACCAACTT 60.271 52.381 0.00 0.00 27.88 2.66
6995 10960 0.324943 CCGGTCATCCTGAACCAACT 59.675 55.000 0.00 0.00 27.88 3.16
6996 10961 1.305930 GCCGGTCATCCTGAACCAAC 61.306 60.000 1.90 0.00 27.88 3.77
6997 10962 1.002624 GCCGGTCATCCTGAACCAA 60.003 57.895 1.90 0.00 27.88 3.67
6998 10963 1.918293 AGCCGGTCATCCTGAACCA 60.918 57.895 1.90 0.00 27.88 3.67
6999 10964 1.450312 CAGCCGGTCATCCTGAACC 60.450 63.158 1.90 0.00 27.88 3.62
7000 10965 1.450312 CCAGCCGGTCATCCTGAAC 60.450 63.158 1.90 0.00 0.00 3.18
7001 10966 2.669133 CCCAGCCGGTCATCCTGAA 61.669 63.158 1.90 0.00 0.00 3.02
7002 10967 3.083349 CCCAGCCGGTCATCCTGA 61.083 66.667 1.90 0.00 0.00 3.86
7008 10973 3.399181 GACATCCCCAGCCGGTCA 61.399 66.667 1.90 0.00 0.00 4.02
7016 10981 1.987855 GTCGTCCCTGACATCCCCA 60.988 63.158 0.00 0.00 38.75 4.96
7026 10991 3.904717 ACAGATTATCAGAGTCGTCCCT 58.095 45.455 0.00 0.00 0.00 4.20
7027 10992 4.657436 AACAGATTATCAGAGTCGTCCC 57.343 45.455 0.00 0.00 0.00 4.46
7029 10994 7.432838 GGAAGTAAACAGATTATCAGAGTCGTC 59.567 40.741 0.00 0.00 0.00 4.20
7030 10995 7.122948 AGGAAGTAAACAGATTATCAGAGTCGT 59.877 37.037 0.00 0.00 0.00 4.34
7031 10996 7.484975 AGGAAGTAAACAGATTATCAGAGTCG 58.515 38.462 0.00 0.00 0.00 4.18
7045 11010 4.426704 AGAGGAAGGCTAGGAAGTAAACA 58.573 43.478 0.00 0.00 0.00 2.83
7064 11029 4.125703 GACATTAGTCATGCCTTGGAGAG 58.874 47.826 0.00 0.00 44.34 3.20
7112 11300 0.096976 CGTTGCTTGCGGATTACCAG 59.903 55.000 0.00 0.00 35.59 4.00
7113 11301 0.320858 TCGTTGCTTGCGGATTACCA 60.321 50.000 0.00 0.00 35.59 3.25
7114 11302 0.096454 GTCGTTGCTTGCGGATTACC 59.904 55.000 0.00 0.00 0.00 2.85
7115 11303 0.096454 GGTCGTTGCTTGCGGATTAC 59.904 55.000 0.00 0.00 0.00 1.89
7142 11330 9.152595 GGACTTTTTGTACAATGTTTACCAAAA 57.847 29.630 9.56 2.91 0.00 2.44
7143 11331 8.311836 TGGACTTTTTGTACAATGTTTACCAAA 58.688 29.630 9.56 3.61 36.38 3.28
7151 11339 6.767524 TTGAGTGGACTTTTTGTACAATGT 57.232 33.333 9.56 8.91 41.93 2.71
7153 11341 7.285401 AGACATTGAGTGGACTTTTTGTACAAT 59.715 33.333 9.56 0.00 41.93 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.