Multiple sequence alignment - TraesCS1A01G016100

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G016100 chr1A 100.000 4559 0 0 1 4559 8341038 8345596 0.000000e+00 8419.0
1 TraesCS1A01G016100 chr1A 90.580 2707 239 9 859 3558 8331799 8334496 0.000000e+00 3572.0
2 TraesCS1A01G016100 chr1A 99.453 1462 8 0 1282 2743 8364367 8365828 0.000000e+00 2656.0
3 TraesCS1A01G016100 chr1A 91.525 59 2 1 3842 3897 8331172 8331230 1.360000e-10 78.7
4 TraesCS1A01G016100 chr1A 83.784 74 11 1 378 450 8341331 8341404 8.180000e-08 69.4
5 TraesCS1A01G016100 chr1A 83.784 74 11 1 294 367 8341415 8341487 8.180000e-08 69.4
6 TraesCS1A01G016100 chr1B 91.798 2731 213 5 829 3559 8820099 8817380 0.000000e+00 3792.0
7 TraesCS1A01G016100 chr1B 89.262 298 20 6 4270 4559 6396778 6397071 3.350000e-96 363.0
8 TraesCS1A01G016100 chr1D 91.581 2732 198 23 954 3682 6913108 6915810 0.000000e+00 3742.0
9 TraesCS1A01G016100 chr1D 82.868 2720 382 52 1009 3703 407672543 407669883 0.000000e+00 2364.0
10 TraesCS1A01G016100 chr1D 81.656 2802 395 56 951 3709 6721658 6718933 0.000000e+00 2217.0
11 TraesCS1A01G016100 chr1D 80.450 3069 436 82 906 3898 6898351 6901331 0.000000e+00 2193.0
12 TraesCS1A01G016100 chr1D 90.544 349 31 2 3894 4240 10391947 10391599 1.160000e-125 460.0
13 TraesCS1A01G016100 chr2A 85.442 2679 352 32 913 3568 611302729 611305392 0.000000e+00 2752.0
14 TraesCS1A01G016100 chr2B 85.543 2663 341 33 930 3568 548623904 548626546 0.000000e+00 2745.0
15 TraesCS1A01G016100 chr2B 81.335 2652 392 56 950 3560 729766536 729769125 0.000000e+00 2060.0
16 TraesCS1A01G016100 chr2D 85.280 2663 357 28 930 3568 469990501 469993152 0.000000e+00 2713.0
17 TraesCS1A01G016100 chr2D 82.664 2688 374 46 918 3565 469983939 469986574 0.000000e+00 2298.0
18 TraesCS1A01G016100 chr2D 84.789 710 58 21 3898 4559 46693766 46693059 0.000000e+00 667.0
19 TraesCS1A01G016100 chr2D 78.039 255 33 19 551 798 469989974 469990212 6.150000e-29 139.0
20 TraesCS1A01G016100 chr5A 82.839 2698 369 53 1009 3680 12194215 12191586 0.000000e+00 2331.0
21 TraesCS1A01G016100 chr5B 82.389 2737 382 60 1002 3707 13776139 13773472 0.000000e+00 2292.0
22 TraesCS1A01G016100 chr5B 81.650 2812 378 68 946 3709 549547923 549550644 0.000000e+00 2207.0
23 TraesCS1A01G016100 chr6B 85.914 717 40 21 3898 4559 366596284 366595574 0.000000e+00 708.0
24 TraesCS1A01G016100 chr6B 85.077 717 47 31 3898 4559 712151898 712152609 0.000000e+00 676.0
25 TraesCS1A01G016100 chr6D 84.789 710 58 20 3898 4559 429473821 429474528 0.000000e+00 667.0
26 TraesCS1A01G016100 chr7D 84.648 710 59 20 3898 4559 615778481 615779188 0.000000e+00 662.0
27 TraesCS1A01G016100 chr5D 84.507 710 60 20 3898 4559 41776635 41777342 0.000000e+00 656.0
28 TraesCS1A01G016100 chr4A 83.565 718 47 32 3897 4559 58507670 58508371 1.400000e-169 606.0
29 TraesCS1A01G016100 chr3B 83.217 715 47 32 3899 4559 465857842 465858537 5.080000e-164 588.0
30 TraesCS1A01G016100 chr7A 83.008 718 49 31 3898 4559 11051444 11050744 2.360000e-162 582.0
31 TraesCS1A01G016100 chr7A 87.719 285 31 4 4277 4559 12768923 12768641 3.400000e-86 329.0
32 TraesCS1A01G016100 chr7A 92.683 123 9 0 4153 4275 708601839 708601961 1.300000e-40 178.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G016100 chr1A 8341038 8345596 4558 False 8419.000000 8419 100.000000 1 4559 1 chr1A.!!$F1 4558
1 TraesCS1A01G016100 chr1A 8364367 8365828 1461 False 2656.000000 2656 99.453000 1282 2743 1 chr1A.!!$F2 1461
2 TraesCS1A01G016100 chr1A 8331172 8334496 3324 False 1825.350000 3572 91.052500 859 3897 2 chr1A.!!$F3 3038
3 TraesCS1A01G016100 chr1B 8817380 8820099 2719 True 3792.000000 3792 91.798000 829 3559 1 chr1B.!!$R1 2730
4 TraesCS1A01G016100 chr1D 6913108 6915810 2702 False 3742.000000 3742 91.581000 954 3682 1 chr1D.!!$F2 2728
5 TraesCS1A01G016100 chr1D 407669883 407672543 2660 True 2364.000000 2364 82.868000 1009 3703 1 chr1D.!!$R3 2694
6 TraesCS1A01G016100 chr1D 6718933 6721658 2725 True 2217.000000 2217 81.656000 951 3709 1 chr1D.!!$R1 2758
7 TraesCS1A01G016100 chr1D 6898351 6901331 2980 False 2193.000000 2193 80.450000 906 3898 1 chr1D.!!$F1 2992
8 TraesCS1A01G016100 chr2A 611302729 611305392 2663 False 2752.000000 2752 85.442000 913 3568 1 chr2A.!!$F1 2655
9 TraesCS1A01G016100 chr2B 548623904 548626546 2642 False 2745.000000 2745 85.543000 930 3568 1 chr2B.!!$F1 2638
10 TraesCS1A01G016100 chr2B 729766536 729769125 2589 False 2060.000000 2060 81.335000 950 3560 1 chr2B.!!$F2 2610
11 TraesCS1A01G016100 chr2D 469983939 469993152 9213 False 1716.666667 2713 81.994333 551 3568 3 chr2D.!!$F1 3017
12 TraesCS1A01G016100 chr2D 46693059 46693766 707 True 667.000000 667 84.789000 3898 4559 1 chr2D.!!$R1 661
13 TraesCS1A01G016100 chr5A 12191586 12194215 2629 True 2331.000000 2331 82.839000 1009 3680 1 chr5A.!!$R1 2671
14 TraesCS1A01G016100 chr5B 13773472 13776139 2667 True 2292.000000 2292 82.389000 1002 3707 1 chr5B.!!$R1 2705
15 TraesCS1A01G016100 chr5B 549547923 549550644 2721 False 2207.000000 2207 81.650000 946 3709 1 chr5B.!!$F1 2763
16 TraesCS1A01G016100 chr6B 366595574 366596284 710 True 708.000000 708 85.914000 3898 4559 1 chr6B.!!$R1 661
17 TraesCS1A01G016100 chr6B 712151898 712152609 711 False 676.000000 676 85.077000 3898 4559 1 chr6B.!!$F1 661
18 TraesCS1A01G016100 chr6D 429473821 429474528 707 False 667.000000 667 84.789000 3898 4559 1 chr6D.!!$F1 661
19 TraesCS1A01G016100 chr7D 615778481 615779188 707 False 662.000000 662 84.648000 3898 4559 1 chr7D.!!$F1 661
20 TraesCS1A01G016100 chr5D 41776635 41777342 707 False 656.000000 656 84.507000 3898 4559 1 chr5D.!!$F1 661
21 TraesCS1A01G016100 chr4A 58507670 58508371 701 False 606.000000 606 83.565000 3897 4559 1 chr4A.!!$F1 662
22 TraesCS1A01G016100 chr3B 465857842 465858537 695 False 588.000000 588 83.217000 3899 4559 1 chr3B.!!$F1 660
23 TraesCS1A01G016100 chr7A 11050744 11051444 700 True 582.000000 582 83.008000 3898 4559 1 chr7A.!!$R1 661

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
515 516 0.034670 GGTTCAATGAGCCTGAGCCT 60.035 55.0 8.97 0.0 40.13 4.58 F
853 6343 0.034896 GGAAGCTTCGAAGGTCCACA 59.965 55.0 28.42 0.0 35.34 4.17 F
1056 6749 0.035915 GGCTTCTCCTCTTCCACACC 60.036 60.0 0.00 0.0 0.00 4.16 F
3081 8853 0.170339 GGTTGGCTGCGTTTATGGAC 59.830 55.0 0.00 0.0 0.00 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2808 8577 0.250252 TGTGATCACCTTCGCAGCAA 60.250 50.000 22.85 0.0 32.59 3.91 R
3148 8920 1.210155 GTGTGATTGCAACTCCGGC 59.790 57.895 0.00 0.0 0.00 6.13 R
3288 9060 1.745653 GCTTGCACAGGGAAATACTCC 59.254 52.381 0.00 0.0 44.54 3.85 R
4359 10228 0.036164 TCAACGGCAGCCACAAGTAT 59.964 50.000 13.30 0.0 0.00 2.12 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.113860 TCTGCCAATGTGTAAGAGGC 57.886 50.000 0.00 0.00 45.41 4.70
23 24 1.098050 CCAATGTGTAAGAGGCAGCC 58.902 55.000 1.84 1.84 0.00 4.85
24 25 1.340405 CCAATGTGTAAGAGGCAGCCT 60.340 52.381 16.12 16.12 36.03 4.58
25 26 2.092968 CCAATGTGTAAGAGGCAGCCTA 60.093 50.000 16.16 0.00 31.76 3.93
27 28 4.202441 CAATGTGTAAGAGGCAGCCTATT 58.798 43.478 24.58 24.58 38.67 1.73
29 30 2.170607 TGTGTAAGAGGCAGCCTATTCC 59.829 50.000 24.89 14.58 36.41 3.01
30 31 2.170607 GTGTAAGAGGCAGCCTATTCCA 59.829 50.000 24.89 17.25 36.41 3.53
31 32 2.170607 TGTAAGAGGCAGCCTATTCCAC 59.829 50.000 24.89 18.16 36.41 4.02
33 34 1.127343 AGAGGCAGCCTATTCCACTC 58.873 55.000 16.16 0.00 31.76 3.51
34 35 1.127343 GAGGCAGCCTATTCCACTCT 58.873 55.000 16.16 0.00 31.76 3.24
35 36 2.091055 AGAGGCAGCCTATTCCACTCTA 60.091 50.000 16.16 0.00 31.76 2.43
36 37 2.903135 GAGGCAGCCTATTCCACTCTAT 59.097 50.000 16.16 0.00 31.76 1.98
37 38 2.636893 AGGCAGCCTATTCCACTCTATG 59.363 50.000 14.18 0.00 28.47 2.23
48 49 1.417517 CCACTCTATGGGTGCTATGCA 59.582 52.381 0.00 0.00 45.95 3.96
49 50 2.039480 CCACTCTATGGGTGCTATGCAT 59.961 50.000 3.79 3.79 45.95 3.96
51 52 4.263025 CCACTCTATGGGTGCTATGCATTA 60.263 45.833 3.54 0.00 45.95 1.90
54 55 6.432162 CACTCTATGGGTGCTATGCATTATTT 59.568 38.462 3.54 0.00 41.91 1.40
56 57 8.163408 ACTCTATGGGTGCTATGCATTATTTTA 58.837 33.333 3.54 0.00 41.91 1.52
78 79 9.651913 TTTTATTTATCCTGAACTTGGAAATGC 57.348 29.630 0.00 0.00 37.13 3.56
80 81 9.693739 TTATTTATCCTGAACTTGGAAATGCTA 57.306 29.630 0.00 0.00 37.13 3.49
82 83 7.572523 TTATCCTGAACTTGGAAATGCTATG 57.427 36.000 0.00 0.00 37.13 2.23
84 85 5.188434 TCCTGAACTTGGAAATGCTATGAG 58.812 41.667 0.00 0.00 0.00 2.90
88 89 4.162040 ACTTGGAAATGCTATGAGGGAG 57.838 45.455 0.00 0.00 0.00 4.30
90 91 4.228210 ACTTGGAAATGCTATGAGGGAGAA 59.772 41.667 0.00 0.00 0.00 2.87
91 92 4.156455 TGGAAATGCTATGAGGGAGAAC 57.844 45.455 0.00 0.00 0.00 3.01
92 93 3.523157 TGGAAATGCTATGAGGGAGAACA 59.477 43.478 0.00 0.00 0.00 3.18
93 94 4.133078 GGAAATGCTATGAGGGAGAACAG 58.867 47.826 0.00 0.00 0.00 3.16
95 96 0.833287 TGCTATGAGGGAGAACAGCC 59.167 55.000 0.00 0.00 0.00 4.85
96 97 1.127343 GCTATGAGGGAGAACAGCCT 58.873 55.000 0.00 0.00 0.00 4.58
103 104 1.073897 GGAGAACAGCCTGCCAGTT 59.926 57.895 0.00 0.00 0.00 3.16
104 105 0.324943 GGAGAACAGCCTGCCAGTTA 59.675 55.000 0.00 0.00 0.00 2.24
105 106 1.677217 GGAGAACAGCCTGCCAGTTAG 60.677 57.143 0.00 0.00 0.00 2.34
106 107 0.326264 AGAACAGCCTGCCAGTTAGG 59.674 55.000 0.00 0.00 41.84 2.69
107 108 0.036875 GAACAGCCTGCCAGTTAGGT 59.963 55.000 0.00 0.00 40.61 3.08
108 109 0.478507 AACAGCCTGCCAGTTAGGTT 59.521 50.000 0.00 0.00 40.61 3.50
112 113 0.678048 GCCTGCCAGTTAGGTTCCTG 60.678 60.000 1.12 0.00 40.61 3.86
114 115 1.339151 CCTGCCAGTTAGGTTCCTGAC 60.339 57.143 5.76 5.76 40.61 3.51
115 116 1.625818 CTGCCAGTTAGGTTCCTGACT 59.374 52.381 9.95 9.95 40.61 3.41
116 117 2.832129 CTGCCAGTTAGGTTCCTGACTA 59.168 50.000 14.39 1.40 40.61 2.59
117 118 2.832129 TGCCAGTTAGGTTCCTGACTAG 59.168 50.000 14.39 9.68 40.61 2.57
118 119 2.168728 GCCAGTTAGGTTCCTGACTAGG 59.831 54.545 14.39 16.78 42.08 3.02
121 122 4.322801 CCAGTTAGGTTCCTGACTAGGTTG 60.323 50.000 14.39 4.95 44.88 3.77
122 123 3.261137 AGTTAGGTTCCTGACTAGGTTGC 59.739 47.826 13.42 0.00 44.88 4.17
124 125 2.339769 AGGTTCCTGACTAGGTTGCTT 58.660 47.619 0.00 0.00 44.88 3.91
125 126 2.711547 AGGTTCCTGACTAGGTTGCTTT 59.288 45.455 0.00 0.00 44.88 3.51
126 127 3.075148 GGTTCCTGACTAGGTTGCTTTC 58.925 50.000 0.00 0.00 44.88 2.62
128 129 2.621070 TCCTGACTAGGTTGCTTTCCT 58.379 47.619 0.00 0.00 44.88 3.36
129 130 2.979678 TCCTGACTAGGTTGCTTTCCTT 59.020 45.455 0.00 0.00 44.88 3.36
131 132 4.141251 TCCTGACTAGGTTGCTTTCCTTTT 60.141 41.667 0.00 0.00 44.88 2.27
133 134 5.278512 CCTGACTAGGTTGCTTTCCTTTTTC 60.279 44.000 0.00 0.00 39.39 2.29
136 137 5.201243 ACTAGGTTGCTTTCCTTTTTCTGT 58.799 37.500 0.00 0.00 36.60 3.41
137 138 5.656859 ACTAGGTTGCTTTCCTTTTTCTGTT 59.343 36.000 0.00 0.00 36.60 3.16
139 140 5.804639 AGGTTGCTTTCCTTTTTCTGTTTT 58.195 33.333 0.00 0.00 30.18 2.43
168 169 5.659440 AAAAGGTTGCTTTCTTTCTGACA 57.341 34.783 0.00 0.00 32.68 3.58
171 172 5.859205 AGGTTGCTTTCTTTCTGACATTT 57.141 34.783 0.00 0.00 0.00 2.32
174 175 5.812127 GGTTGCTTTCTTTCTGACATTTTGT 59.188 36.000 0.00 0.00 0.00 2.83
177 178 7.566760 TGCTTTCTTTCTGACATTTTGTAGA 57.433 32.000 0.00 0.00 0.00 2.59
179 180 8.632679 TGCTTTCTTTCTGACATTTTGTAGAAT 58.367 29.630 0.00 0.00 0.00 2.40
180 181 9.468532 GCTTTCTTTCTGACATTTTGTAGAATT 57.531 29.630 0.00 0.00 0.00 2.17
185 186 7.994425 TTCTGACATTTTGTAGAATTAGCCA 57.006 32.000 0.00 0.00 0.00 4.75
186 187 7.377766 TCTGACATTTTGTAGAATTAGCCAC 57.622 36.000 0.00 0.00 0.00 5.01
187 188 6.374333 TCTGACATTTTGTAGAATTAGCCACC 59.626 38.462 0.00 0.00 0.00 4.61
190 191 6.010219 ACATTTTGTAGAATTAGCCACCACT 58.990 36.000 0.00 0.00 0.00 4.00
191 192 5.957842 TTTTGTAGAATTAGCCACCACTG 57.042 39.130 0.00 0.00 0.00 3.66
192 193 2.985896 TGTAGAATTAGCCACCACTGC 58.014 47.619 0.00 0.00 0.00 4.40
196 197 0.405585 AATTAGCCACCACTGCCACT 59.594 50.000 0.00 0.00 0.00 4.00
198 199 0.537143 TTAGCCACCACTGCCACTTG 60.537 55.000 0.00 0.00 0.00 3.16
199 200 3.982241 GCCACCACTGCCACTTGC 61.982 66.667 0.00 0.00 41.77 4.01
200 201 3.297620 CCACCACTGCCACTTGCC 61.298 66.667 0.00 0.00 40.16 4.52
201 202 2.519063 CACCACTGCCACTTGCCA 60.519 61.111 0.00 0.00 40.16 4.92
202 203 2.203394 ACCACTGCCACTTGCCAG 60.203 61.111 0.00 0.00 40.16 4.85
203 204 2.113774 CCACTGCCACTTGCCAGA 59.886 61.111 0.00 0.00 40.16 3.86
206 207 1.228063 ACTGCCACTTGCCAGAGTG 60.228 57.895 0.00 0.00 45.19 3.51
215 216 0.978907 TTGCCAGAGTGATGCAGAGA 59.021 50.000 0.00 0.00 36.21 3.10
216 217 0.535797 TGCCAGAGTGATGCAGAGAG 59.464 55.000 0.00 0.00 0.00 3.20
217 218 0.822811 GCCAGAGTGATGCAGAGAGA 59.177 55.000 0.00 0.00 0.00 3.10
219 220 2.101783 CCAGAGTGATGCAGAGAGAGT 58.898 52.381 0.00 0.00 0.00 3.24
220 221 2.496871 CCAGAGTGATGCAGAGAGAGTT 59.503 50.000 0.00 0.00 0.00 3.01
221 222 3.513662 CAGAGTGATGCAGAGAGAGTTG 58.486 50.000 0.00 0.00 0.00 3.16
224 225 3.164268 AGTGATGCAGAGAGAGTTGACT 58.836 45.455 0.00 0.00 0.00 3.41
225 226 3.056678 AGTGATGCAGAGAGAGTTGACTG 60.057 47.826 0.00 0.00 0.00 3.51
226 227 3.056962 GTGATGCAGAGAGAGTTGACTGA 60.057 47.826 0.00 0.00 32.90 3.41
230 231 3.005261 TGCAGAGAGAGTTGACTGACTTC 59.995 47.826 0.00 0.00 32.90 3.01
231 232 3.005261 GCAGAGAGAGTTGACTGACTTCA 59.995 47.826 0.00 0.00 32.90 3.02
233 234 4.037327 CAGAGAGAGTTGACTGACTTCACA 59.963 45.833 0.00 0.00 32.90 3.58
234 235 4.646945 AGAGAGAGTTGACTGACTTCACAA 59.353 41.667 0.00 0.00 0.00 3.33
235 236 5.127845 AGAGAGAGTTGACTGACTTCACAAA 59.872 40.000 0.00 0.00 0.00 2.83
238 239 5.491982 AGAGTTGACTGACTTCACAAAAGT 58.508 37.500 0.00 0.00 0.00 2.66
256 257 3.339061 TCGTTTGATCGACCGGATG 57.661 52.632 9.46 0.00 34.82 3.51
257 258 0.812549 TCGTTTGATCGACCGGATGA 59.187 50.000 9.46 5.48 34.82 2.92
262 263 1.025041 TGATCGACCGGATGAGAGTG 58.975 55.000 9.46 0.00 34.82 3.51
264 265 1.002251 GATCGACCGGATGAGAGTGAC 60.002 57.143 9.46 0.00 34.82 3.67
266 267 0.099613 CGACCGGATGAGAGTGACTG 59.900 60.000 9.46 0.00 0.00 3.51
267 268 0.457851 GACCGGATGAGAGTGACTGG 59.542 60.000 9.46 0.00 35.21 4.00
269 270 1.680522 CCGGATGAGAGTGACTGGGG 61.681 65.000 0.00 0.00 0.00 4.96
270 271 0.684479 CGGATGAGAGTGACTGGGGA 60.684 60.000 0.00 0.00 0.00 4.81
272 273 1.909302 GGATGAGAGTGACTGGGGAAA 59.091 52.381 0.00 0.00 0.00 3.13
273 274 2.507471 GGATGAGAGTGACTGGGGAAAT 59.493 50.000 0.00 0.00 0.00 2.17
276 277 3.791320 TGAGAGTGACTGGGGAAATAGT 58.209 45.455 0.00 0.00 0.00 2.12
277 278 3.769844 TGAGAGTGACTGGGGAAATAGTC 59.230 47.826 0.00 0.00 42.77 2.59
281 282 2.551270 TGACTGGGGAAATAGTCAGCT 58.449 47.619 3.18 0.00 45.97 4.24
282 283 2.237143 TGACTGGGGAAATAGTCAGCTG 59.763 50.000 7.63 7.63 45.97 4.24
287 288 3.055094 TGGGGAAATAGTCAGCTGAACTC 60.055 47.826 20.19 6.32 0.00 3.01
288 289 3.055094 GGGGAAATAGTCAGCTGAACTCA 60.055 47.826 20.19 4.04 0.00 3.41
291 292 5.988561 GGGAAATAGTCAGCTGAACTCATAG 59.011 44.000 20.19 0.00 0.00 2.23
292 293 5.465056 GGAAATAGTCAGCTGAACTCATAGC 59.535 44.000 20.19 2.99 40.18 2.97
294 295 2.095461 AGTCAGCTGAACTCATAGCGA 58.905 47.619 20.19 0.00 44.43 4.93
296 297 3.131933 AGTCAGCTGAACTCATAGCGAAT 59.868 43.478 20.19 0.00 44.43 3.34
297 298 3.244814 GTCAGCTGAACTCATAGCGAATG 59.755 47.826 20.19 0.00 44.43 2.67
298 299 3.131046 TCAGCTGAACTCATAGCGAATGA 59.869 43.478 15.67 4.94 44.43 2.57
307 308 3.387397 TCATAGCGAATGAGACATGCTG 58.613 45.455 0.00 0.00 39.77 4.41
309 310 0.251354 AGCGAATGAGACATGCTGGT 59.749 50.000 0.00 0.00 33.99 4.00
311 312 1.293924 CGAATGAGACATGCTGGTCC 58.706 55.000 0.00 0.00 38.59 4.46
312 313 1.405933 CGAATGAGACATGCTGGTCCA 60.406 52.381 0.00 0.00 38.59 4.02
313 314 2.715046 GAATGAGACATGCTGGTCCAA 58.285 47.619 0.00 0.00 38.59 3.53
314 315 3.285484 GAATGAGACATGCTGGTCCAAT 58.715 45.455 0.00 0.00 38.59 3.16
316 317 1.629861 TGAGACATGCTGGTCCAATGA 59.370 47.619 10.05 0.00 38.59 2.57
318 319 2.421424 GAGACATGCTGGTCCAATGAAC 59.579 50.000 10.05 4.64 38.59 3.18
319 320 1.474077 GACATGCTGGTCCAATGAACC 59.526 52.381 10.05 0.00 37.31 3.62
321 322 1.475280 CATGCTGGTCCAATGAACCTG 59.525 52.381 0.00 0.00 37.69 4.00
322 323 0.251297 TGCTGGTCCAATGAACCTGG 60.251 55.000 0.00 0.00 37.69 4.45
323 324 0.967380 GCTGGTCCAATGAACCTGGG 60.967 60.000 0.00 0.00 37.69 4.45
324 325 0.698238 CTGGTCCAATGAACCTGGGA 59.302 55.000 0.00 0.00 37.69 4.37
327 328 2.586648 GTCCAATGAACCTGGGACTT 57.413 50.000 0.00 0.00 44.99 3.01
328 329 2.876581 GTCCAATGAACCTGGGACTTT 58.123 47.619 0.00 0.00 44.99 2.66
330 331 2.445145 TCCAATGAACCTGGGACTTTGA 59.555 45.455 16.34 6.14 34.46 2.69
331 332 2.558359 CCAATGAACCTGGGACTTTGAC 59.442 50.000 16.34 0.00 0.00 3.18
335 336 0.178990 AACCTGGGACTTTGACTGGC 60.179 55.000 0.00 0.00 0.00 4.85
337 338 0.111253 CCTGGGACTTTGACTGGCTT 59.889 55.000 0.00 0.00 0.00 4.35
338 339 1.528129 CTGGGACTTTGACTGGCTTC 58.472 55.000 0.00 0.00 0.00 3.86
343 344 2.687935 GGACTTTGACTGGCTTCACAAA 59.312 45.455 0.00 0.00 0.00 2.83
346 347 3.763897 ACTTTGACTGGCTTCACAAAAGT 59.236 39.130 0.00 0.00 33.05 2.66
348 349 1.939934 TGACTGGCTTCACAAAAGTCG 59.060 47.619 0.00 0.00 40.10 4.18
349 350 1.940613 GACTGGCTTCACAAAAGTCGT 59.059 47.619 0.00 0.00 0.00 4.34
358 359 0.865769 ACAAAAGTCGTGTGATCGGC 59.134 50.000 0.00 0.00 35.56 5.54
360 361 0.250124 AAAAGTCGTGTGATCGGCCA 60.250 50.000 2.24 0.00 35.98 5.36
361 362 0.250124 AAAGTCGTGTGATCGGCCAA 60.250 50.000 2.24 0.00 35.98 4.52
368 369 1.812571 GTGTGATCGGCCAAATGAGTT 59.187 47.619 2.24 0.00 0.00 3.01
370 371 2.228582 TGTGATCGGCCAAATGAGTTTG 59.771 45.455 2.24 0.00 43.43 2.93
374 375 1.879380 TCGGCCAAATGAGTTTGACTG 59.121 47.619 2.24 0.00 46.03 3.51
375 376 1.068333 CGGCCAAATGAGTTTGACTGG 60.068 52.381 2.24 0.00 46.03 4.00
376 377 1.273327 GGCCAAATGAGTTTGACTGGG 59.727 52.381 0.00 0.00 46.03 4.45
377 378 1.273327 GCCAAATGAGTTTGACTGGGG 59.727 52.381 2.67 0.00 46.03 4.96
378 379 2.875296 CCAAATGAGTTTGACTGGGGA 58.125 47.619 2.67 0.00 46.03 4.81
379 380 3.230134 CCAAATGAGTTTGACTGGGGAA 58.770 45.455 2.67 0.00 46.03 3.97
382 383 3.710209 ATGAGTTTGACTGGGGAAGAG 57.290 47.619 0.00 0.00 0.00 2.85
383 384 2.689658 TGAGTTTGACTGGGGAAGAGA 58.310 47.619 0.00 0.00 0.00 3.10
385 386 2.368875 GAGTTTGACTGGGGAAGAGACA 59.631 50.000 0.00 0.00 0.00 3.41
386 387 2.982488 AGTTTGACTGGGGAAGAGACAT 59.018 45.455 0.00 0.00 0.00 3.06
388 389 4.141158 AGTTTGACTGGGGAAGAGACATTT 60.141 41.667 0.00 0.00 0.00 2.32
389 390 4.453480 TTGACTGGGGAAGAGACATTTT 57.547 40.909 0.00 0.00 0.00 1.82
390 391 5.576563 TTGACTGGGGAAGAGACATTTTA 57.423 39.130 0.00 0.00 0.00 1.52
391 392 5.165961 TGACTGGGGAAGAGACATTTTAG 57.834 43.478 0.00 0.00 0.00 1.85
392 393 4.597507 TGACTGGGGAAGAGACATTTTAGT 59.402 41.667 0.00 0.00 0.00 2.24
393 394 5.783360 TGACTGGGGAAGAGACATTTTAGTA 59.217 40.000 0.00 0.00 0.00 1.82
394 395 6.271391 TGACTGGGGAAGAGACATTTTAGTAA 59.729 38.462 0.00 0.00 0.00 2.24
395 396 7.086685 ACTGGGGAAGAGACATTTTAGTAAA 57.913 36.000 0.00 0.00 0.00 2.01
396 397 7.523415 ACTGGGGAAGAGACATTTTAGTAAAA 58.477 34.615 10.39 10.39 34.41 1.52
397 398 8.170730 ACTGGGGAAGAGACATTTTAGTAAAAT 58.829 33.333 13.95 13.95 41.57 1.82
408 409 6.775594 ATTTTAGTAAAATGAGCCTGGGAC 57.224 37.500 18.02 0.00 39.50 4.46
409 410 5.514500 TTTAGTAAAATGAGCCTGGGACT 57.486 39.130 0.00 0.00 0.00 3.85
410 411 5.514500 TTAGTAAAATGAGCCTGGGACTT 57.486 39.130 0.00 0.00 0.00 3.01
412 413 4.082125 AGTAAAATGAGCCTGGGACTTTG 58.918 43.478 0.00 0.00 0.00 2.77
415 416 1.366319 ATGAGCCTGGGACTTTGACT 58.634 50.000 0.00 0.00 0.00 3.41
416 417 0.397941 TGAGCCTGGGACTTTGACTG 59.602 55.000 0.00 0.00 0.00 3.51
417 418 0.322008 GAGCCTGGGACTTTGACTGG 60.322 60.000 0.00 0.00 0.00 4.00
418 419 1.973812 GCCTGGGACTTTGACTGGC 60.974 63.158 0.00 0.00 41.01 4.85
423 424 1.239347 GGGACTTTGACTGGCTTCAC 58.761 55.000 0.00 0.00 0.00 3.18
424 425 1.476833 GGGACTTTGACTGGCTTCACA 60.477 52.381 0.00 0.00 0.00 3.58
426 427 2.687935 GGACTTTGACTGGCTTCACAAA 59.312 45.455 0.00 0.00 0.00 2.83
428 429 4.354587 GACTTTGACTGGCTTCACAAAAG 58.645 43.478 0.00 0.00 33.05 2.27
429 430 3.131046 ACTTTGACTGGCTTCACAAAAGG 59.869 43.478 0.00 0.00 33.05 3.11
430 431 1.032014 TGACTGGCTTCACAAAAGGC 58.968 50.000 4.55 4.55 42.45 4.35
435 436 1.068895 TGGCTTCACAAAAGGCATGTG 59.931 47.619 9.65 10.64 46.03 3.21
441 442 2.460757 ACAAAAGGCATGTGATTGGC 57.539 45.000 0.00 0.00 42.18 4.52
442 443 1.693062 ACAAAAGGCATGTGATTGGCA 59.307 42.857 0.00 0.00 44.16 4.92
443 444 2.104451 ACAAAAGGCATGTGATTGGCAA 59.896 40.909 0.68 0.68 44.16 4.52
445 446 4.020396 ACAAAAGGCATGTGATTGGCAATA 60.020 37.500 13.65 0.00 44.16 1.90
447 448 4.330944 AAGGCATGTGATTGGCAATATG 57.669 40.909 13.65 14.08 44.16 1.78
448 449 3.568443 AGGCATGTGATTGGCAATATGA 58.432 40.909 20.34 6.37 44.16 2.15
450 451 3.570975 GGCATGTGATTGGCAATATGAGA 59.429 43.478 20.34 5.85 41.53 3.27
451 452 4.321008 GGCATGTGATTGGCAATATGAGAG 60.321 45.833 20.34 8.89 41.53 3.20
452 453 4.795268 CATGTGATTGGCAATATGAGAGC 58.205 43.478 13.65 0.00 0.00 4.09
453 454 2.874086 TGTGATTGGCAATATGAGAGCG 59.126 45.455 13.65 0.00 0.00 5.03
454 455 3.133691 GTGATTGGCAATATGAGAGCGA 58.866 45.455 13.65 0.00 0.00 4.93
456 457 3.561310 TGATTGGCAATATGAGAGCGAAC 59.439 43.478 13.65 0.00 0.00 3.95
457 458 2.689553 TGGCAATATGAGAGCGAACA 57.310 45.000 0.00 0.00 0.00 3.18
458 459 2.554142 TGGCAATATGAGAGCGAACAG 58.446 47.619 0.00 0.00 0.00 3.16
459 460 1.869767 GGCAATATGAGAGCGAACAGG 59.130 52.381 0.00 0.00 0.00 4.00
460 461 1.869767 GCAATATGAGAGCGAACAGGG 59.130 52.381 0.00 0.00 0.00 4.45
461 462 2.483714 GCAATATGAGAGCGAACAGGGA 60.484 50.000 0.00 0.00 0.00 4.20
463 464 4.191544 CAATATGAGAGCGAACAGGGAAA 58.808 43.478 0.00 0.00 0.00 3.13
465 466 5.808366 ATATGAGAGCGAACAGGGAAATA 57.192 39.130 0.00 0.00 0.00 1.40
466 467 3.973206 TGAGAGCGAACAGGGAAATAA 57.027 42.857 0.00 0.00 0.00 1.40
468 469 4.442706 TGAGAGCGAACAGGGAAATAATC 58.557 43.478 0.00 0.00 0.00 1.75
480 481 3.139077 GGAAATAATCCGCCGAACTCAT 58.861 45.455 0.00 0.00 38.79 2.90
482 483 4.527564 GAAATAATCCGCCGAACTCATTG 58.472 43.478 0.00 0.00 0.00 2.82
483 484 1.295792 TAATCCGCCGAACTCATTGC 58.704 50.000 0.00 0.00 0.00 3.56
484 485 0.676466 AATCCGCCGAACTCATTGCA 60.676 50.000 0.00 0.00 0.00 4.08
487 488 0.039617 CCGCCGAACTCATTGCAAAA 60.040 50.000 1.71 0.00 0.00 2.44
489 490 1.069296 CGCCGAACTCATTGCAAAAGA 60.069 47.619 16.58 11.02 0.00 2.52
490 491 2.589014 GCCGAACTCATTGCAAAAGAG 58.411 47.619 23.18 23.18 46.41 2.85
492 493 3.119708 GCCGAACTCATTGCAAAAGAGAT 60.120 43.478 28.55 21.03 43.94 2.75
494 495 5.464168 CCGAACTCATTGCAAAAGAGATTT 58.536 37.500 28.55 18.00 43.94 2.17
497 498 6.129009 CGAACTCATTGCAAAAGAGATTTTGG 60.129 38.462 28.55 15.48 43.94 3.28
498 499 6.165700 ACTCATTGCAAAAGAGATTTTGGT 57.834 33.333 28.55 10.64 43.94 3.67
499 500 6.585416 ACTCATTGCAAAAGAGATTTTGGTT 58.415 32.000 28.55 9.47 43.94 3.67
500 501 6.703165 ACTCATTGCAAAAGAGATTTTGGTTC 59.297 34.615 28.55 0.77 43.94 3.62
501 502 6.580788 TCATTGCAAAAGAGATTTTGGTTCA 58.419 32.000 1.71 2.95 41.04 3.18
503 504 7.716123 TCATTGCAAAAGAGATTTTGGTTCAAT 59.284 29.630 1.71 11.44 41.04 2.57
504 505 6.847956 TGCAAAAGAGATTTTGGTTCAATG 57.152 33.333 13.58 0.00 41.04 2.82
506 507 6.702723 TGCAAAAGAGATTTTGGTTCAATGAG 59.297 34.615 13.58 0.00 41.04 2.90
509 510 4.670765 AGAGATTTTGGTTCAATGAGCCT 58.329 39.130 16.88 0.00 33.98 4.58
511 512 4.410099 AGATTTTGGTTCAATGAGCCTGA 58.590 39.130 16.88 3.47 33.98 3.86
512 513 4.461781 AGATTTTGGTTCAATGAGCCTGAG 59.538 41.667 16.88 0.00 33.98 3.35
513 514 1.538047 TTGGTTCAATGAGCCTGAGC 58.462 50.000 16.88 0.00 33.98 4.26
515 516 0.034670 GGTTCAATGAGCCTGAGCCT 60.035 55.000 8.97 0.00 40.13 4.58
516 517 1.093159 GTTCAATGAGCCTGAGCCTG 58.907 55.000 0.00 0.00 41.25 4.85
517 518 0.694771 TTCAATGAGCCTGAGCCTGT 59.305 50.000 0.00 0.00 41.25 4.00
518 519 0.035725 TCAATGAGCCTGAGCCTGTG 60.036 55.000 0.00 0.00 41.25 3.66
519 520 1.378250 AATGAGCCTGAGCCTGTGC 60.378 57.895 0.00 0.00 41.25 4.57
520 521 2.133359 AATGAGCCTGAGCCTGTGCA 62.133 55.000 0.00 0.00 41.25 4.57
522 523 2.033757 AGCCTGAGCCTGTGCAAG 59.966 61.111 0.00 0.00 41.25 4.01
523 524 2.282040 GCCTGAGCCTGTGCAAGT 60.282 61.111 0.00 0.00 41.13 3.16
525 526 0.606401 GCCTGAGCCTGTGCAAGTAA 60.606 55.000 0.00 0.00 41.13 2.24
527 528 2.440409 CCTGAGCCTGTGCAAGTAATT 58.560 47.619 0.00 0.00 41.13 1.40
528 529 2.821969 CCTGAGCCTGTGCAAGTAATTT 59.178 45.455 0.00 0.00 41.13 1.82
529 530 3.119708 CCTGAGCCTGTGCAAGTAATTTC 60.120 47.826 0.00 0.00 41.13 2.17
530 531 3.485394 TGAGCCTGTGCAAGTAATTTCA 58.515 40.909 0.00 0.00 41.13 2.69
531 532 4.081406 TGAGCCTGTGCAAGTAATTTCAT 58.919 39.130 0.00 0.00 41.13 2.57
533 534 5.064441 AGCCTGTGCAAGTAATTTCATTC 57.936 39.130 0.00 0.00 41.13 2.67
537 538 5.183713 CCTGTGCAAGTAATTTCATTCCTGA 59.816 40.000 0.00 0.00 0.00 3.86
538 539 6.294675 CCTGTGCAAGTAATTTCATTCCTGAA 60.295 38.462 0.00 0.00 39.62 3.02
540 541 6.489700 TGTGCAAGTAATTTCATTCCTGAAGA 59.510 34.615 0.00 0.00 42.19 2.87
541 542 7.025963 GTGCAAGTAATTTCATTCCTGAAGAG 58.974 38.462 0.00 0.00 42.19 2.85
542 543 6.151648 TGCAAGTAATTTCATTCCTGAAGAGG 59.848 38.462 0.00 0.00 42.19 3.69
544 545 7.533426 CAAGTAATTTCATTCCTGAAGAGGTG 58.467 38.462 0.00 0.00 42.19 4.00
545 546 7.020827 AGTAATTTCATTCCTGAAGAGGTGA 57.979 36.000 0.00 0.00 42.19 4.02
546 547 7.108847 AGTAATTTCATTCCTGAAGAGGTGAG 58.891 38.462 0.00 0.00 42.19 3.51
547 548 4.982241 TTTCATTCCTGAAGAGGTGAGT 57.018 40.909 0.00 0.00 42.19 3.41
548 549 4.543590 TTCATTCCTGAAGAGGTGAGTC 57.456 45.455 0.00 0.00 40.76 3.36
549 550 3.784178 TCATTCCTGAAGAGGTGAGTCT 58.216 45.455 0.00 0.00 40.76 3.24
550 551 3.513119 TCATTCCTGAAGAGGTGAGTCTG 59.487 47.826 0.00 0.00 40.76 3.51
552 553 3.464720 TCCTGAAGAGGTGAGTCTGAT 57.535 47.619 0.00 0.00 40.76 2.90
553 554 4.592997 TCCTGAAGAGGTGAGTCTGATA 57.407 45.455 0.00 0.00 40.76 2.15
554 555 4.274147 TCCTGAAGAGGTGAGTCTGATAC 58.726 47.826 0.00 0.00 40.76 2.24
555 556 3.383185 CCTGAAGAGGTGAGTCTGATACC 59.617 52.174 0.00 0.00 34.16 2.73
556 557 3.017442 TGAAGAGGTGAGTCTGATACCG 58.983 50.000 0.00 0.00 39.46 4.02
557 558 2.060050 AGAGGTGAGTCTGATACCGG 57.940 55.000 0.00 0.00 39.46 5.28
558 559 0.386113 GAGGTGAGTCTGATACCGGC 59.614 60.000 0.00 0.00 39.46 6.13
559 560 0.324368 AGGTGAGTCTGATACCGGCA 60.324 55.000 0.00 0.00 39.46 5.69
572 6058 1.217244 CCGGCACTACTACCACCAC 59.783 63.158 0.00 0.00 0.00 4.16
604 6090 7.430441 TGGTTAATTTGTGTTCCTTTTCTAGC 58.570 34.615 0.00 0.00 0.00 3.42
606 6092 7.808381 GGTTAATTTGTGTTCCTTTTCTAGCTC 59.192 37.037 0.00 0.00 0.00 4.09
607 6093 8.568794 GTTAATTTGTGTTCCTTTTCTAGCTCT 58.431 33.333 0.00 0.00 0.00 4.09
608 6094 6.809630 ATTTGTGTTCCTTTTCTAGCTCTC 57.190 37.500 0.00 0.00 0.00 3.20
609 6095 5.552870 TTGTGTTCCTTTTCTAGCTCTCT 57.447 39.130 0.00 0.00 0.00 3.10
610 6096 5.140747 TGTGTTCCTTTTCTAGCTCTCTC 57.859 43.478 0.00 0.00 0.00 3.20
611 6097 4.835615 TGTGTTCCTTTTCTAGCTCTCTCT 59.164 41.667 0.00 0.00 0.00 3.10
612 6098 5.305644 TGTGTTCCTTTTCTAGCTCTCTCTT 59.694 40.000 0.00 0.00 0.00 2.85
613 6099 6.493802 TGTGTTCCTTTTCTAGCTCTCTCTTA 59.506 38.462 0.00 0.00 0.00 2.10
614 6100 7.179338 TGTGTTCCTTTTCTAGCTCTCTCTTAT 59.821 37.037 0.00 0.00 0.00 1.73
615 6101 7.491048 GTGTTCCTTTTCTAGCTCTCTCTTATG 59.509 40.741 0.00 0.00 0.00 1.90
616 6102 7.179338 TGTTCCTTTTCTAGCTCTCTCTTATGT 59.821 37.037 0.00 0.00 0.00 2.29
617 6103 7.106439 TCCTTTTCTAGCTCTCTCTTATGTG 57.894 40.000 0.00 0.00 0.00 3.21
620 6108 8.470805 CCTTTTCTAGCTCTCTCTTATGTGTTA 58.529 37.037 0.00 0.00 0.00 2.41
623 6111 9.640963 TTTCTAGCTCTCTCTTATGTGTTAAAC 57.359 33.333 0.00 0.00 0.00 2.01
634 6122 7.777095 TCTTATGTGTTAAACTTTGCCAACTT 58.223 30.769 0.00 0.00 0.00 2.66
635 6123 8.254508 TCTTATGTGTTAAACTTTGCCAACTTT 58.745 29.630 0.00 0.00 0.00 2.66
637 6125 9.871238 TTATGTGTTAAACTTTGCCAACTTTAA 57.129 25.926 0.00 0.00 0.00 1.52
638 6126 7.583860 TGTGTTAAACTTTGCCAACTTTAAC 57.416 32.000 16.11 16.11 38.62 2.01
640 6128 7.873505 TGTGTTAAACTTTGCCAACTTTAACTT 59.126 29.630 20.11 0.00 38.80 2.66
668 6156 4.698201 TTGTTGTATTCCTGTCTGGTCA 57.302 40.909 0.00 0.00 37.07 4.02
671 6159 3.678056 TGTATTCCTGTCTGGTCACAC 57.322 47.619 0.00 0.00 37.07 3.82
675 6163 2.910688 TCCTGTCTGGTCACACTTTC 57.089 50.000 0.00 0.00 37.07 2.62
676 6164 2.115427 TCCTGTCTGGTCACACTTTCA 58.885 47.619 0.00 0.00 37.07 2.69
677 6165 2.705658 TCCTGTCTGGTCACACTTTCAT 59.294 45.455 0.00 0.00 37.07 2.57
678 6166 3.901222 TCCTGTCTGGTCACACTTTCATA 59.099 43.478 0.00 0.00 37.07 2.15
679 6167 4.021104 TCCTGTCTGGTCACACTTTCATAG 60.021 45.833 0.00 0.00 37.07 2.23
680 6168 4.248859 CTGTCTGGTCACACTTTCATAGG 58.751 47.826 0.00 0.00 0.00 2.57
681 6169 3.007940 TGTCTGGTCACACTTTCATAGGG 59.992 47.826 0.00 0.00 0.00 3.53
682 6170 3.260884 GTCTGGTCACACTTTCATAGGGA 59.739 47.826 0.00 0.00 0.00 4.20
683 6171 3.515502 TCTGGTCACACTTTCATAGGGAG 59.484 47.826 0.00 0.00 0.00 4.30
684 6172 2.027192 TGGTCACACTTTCATAGGGAGC 60.027 50.000 0.00 0.00 0.00 4.70
685 6173 2.237392 GGTCACACTTTCATAGGGAGCT 59.763 50.000 0.00 0.00 0.00 4.09
686 6174 3.307762 GGTCACACTTTCATAGGGAGCTT 60.308 47.826 0.00 0.00 0.00 3.74
687 6175 4.327680 GTCACACTTTCATAGGGAGCTTT 58.672 43.478 0.00 0.00 0.00 3.51
688 6176 4.393371 GTCACACTTTCATAGGGAGCTTTC 59.607 45.833 0.00 0.00 0.00 2.62
689 6177 3.691609 CACACTTTCATAGGGAGCTTTCC 59.308 47.826 0.00 0.00 0.00 3.13
706 6194 3.518634 TTCCTTGGTCTTTTGTGTTGC 57.481 42.857 0.00 0.00 0.00 4.17
711 6199 4.466828 CTTGGTCTTTTGTGTTGCTATCG 58.533 43.478 0.00 0.00 0.00 2.92
712 6200 2.811431 TGGTCTTTTGTGTTGCTATCGG 59.189 45.455 0.00 0.00 0.00 4.18
722 6210 3.608073 GTGTTGCTATCGGTTGAATTTGC 59.392 43.478 0.00 0.00 0.00 3.68
729 6217 5.220265 GCTATCGGTTGAATTTGCATTTGTG 60.220 40.000 0.00 0.00 0.00 3.33
737 6225 8.385111 GGTTGAATTTGCATTTGTGATATTCAG 58.615 33.333 0.00 0.00 33.59 3.02
741 6229 8.697846 AATTTGCATTTGTGATATTCAGTGAG 57.302 30.769 0.00 0.00 0.00 3.51
742 6230 5.239359 TGCATTTGTGATATTCAGTGAGC 57.761 39.130 0.00 0.00 0.00 4.26
746 6234 6.755141 GCATTTGTGATATTCAGTGAGCAAAT 59.245 34.615 0.00 3.24 32.10 2.32
747 6235 7.916977 GCATTTGTGATATTCAGTGAGCAAATA 59.083 33.333 12.71 2.68 30.99 1.40
768 6258 9.956797 CAAATATTTGCGAGTTGGATTTAAAAG 57.043 29.630 14.96 0.00 0.00 2.27
769 6259 9.921637 AAATATTTGCGAGTTGGATTTAAAAGA 57.078 25.926 0.00 0.00 0.00 2.52
770 6260 9.921637 AATATTTGCGAGTTGGATTTAAAAGAA 57.078 25.926 0.00 0.00 0.00 2.52
773 6263 9.921637 ATTTGCGAGTTGGATTTAAAAGAATTA 57.078 25.926 0.00 0.00 0.00 1.40
806 6296 4.865365 GCACTCGCCAGATATTAGTAATCC 59.135 45.833 0.00 0.00 0.00 3.01
808 6298 6.634805 CACTCGCCAGATATTAGTAATCCAT 58.365 40.000 0.00 0.00 0.00 3.41
809 6299 6.533012 CACTCGCCAGATATTAGTAATCCATG 59.467 42.308 0.00 0.00 0.00 3.66
811 6301 5.104941 TCGCCAGATATTAGTAATCCATGGG 60.105 44.000 13.02 8.34 0.00 4.00
812 6302 5.338381 CGCCAGATATTAGTAATCCATGGGT 60.338 44.000 13.02 0.00 0.00 4.51
815 6305 5.882557 CAGATATTAGTAATCCATGGGTGGC 59.117 44.000 13.02 0.94 45.63 5.01
817 6307 3.576078 TTAGTAATCCATGGGTGGCTG 57.424 47.619 13.02 0.00 45.63 4.85
818 6308 0.106519 AGTAATCCATGGGTGGCTGC 60.107 55.000 13.02 0.00 45.63 5.25
819 6309 0.395586 GTAATCCATGGGTGGCTGCA 60.396 55.000 13.02 0.00 45.63 4.41
821 6311 0.757935 AATCCATGGGTGGCTGCATC 60.758 55.000 13.02 0.00 45.63 3.91
822 6312 1.652187 ATCCATGGGTGGCTGCATCT 61.652 55.000 13.02 0.00 45.63 2.90
823 6313 0.987613 TCCATGGGTGGCTGCATCTA 60.988 55.000 13.02 0.00 45.63 1.98
824 6314 0.536687 CCATGGGTGGCTGCATCTAG 60.537 60.000 2.85 0.00 39.01 2.43
825 6315 1.150081 ATGGGTGGCTGCATCTAGC 59.850 57.895 0.50 0.00 45.96 3.42
843 6333 3.121030 CGCCTGGTGGAAGCTTCG 61.121 66.667 19.91 6.40 34.57 3.79
853 6343 0.034896 GGAAGCTTCGAAGGTCCACA 59.965 55.000 28.42 0.00 35.34 4.17
898 6555 3.242413 CCAAAATGGATTGTAGCGACTCG 60.242 47.826 0.00 0.00 40.96 4.18
1022 6712 1.267574 TTCTCCATGCCTCCGCTCTT 61.268 55.000 0.00 0.00 35.36 2.85
1056 6749 0.035915 GGCTTCTCCTCTTCCACACC 60.036 60.000 0.00 0.00 0.00 4.16
1122 6815 3.793144 GCAGGCCAAGTTCTCGCG 61.793 66.667 5.01 0.00 0.00 5.87
1279 6981 5.414454 TGGTTCAATAAGATCCCAGTTTTCG 59.586 40.000 0.00 0.00 35.58 3.46
1511 7246 0.606673 GCCTTCAAAGAGAGCCCGTT 60.607 55.000 0.00 0.00 0.00 4.44
2871 8640 4.599041 TGTTAAATGGGTCTCTTGATGGG 58.401 43.478 0.00 0.00 0.00 4.00
2904 8676 4.304110 AGAAGAGCAATGCAAATGTTGTG 58.696 39.130 8.35 0.00 0.00 3.33
3032 8804 7.767698 AAGCCAGAGAACATACTTCTGGATGA 61.768 42.308 20.65 0.00 45.10 2.92
3076 8848 0.671251 CTTTGGGTTGGCTGCGTTTA 59.329 50.000 0.00 0.00 0.00 2.01
3080 8852 0.963355 GGGTTGGCTGCGTTTATGGA 60.963 55.000 0.00 0.00 0.00 3.41
3081 8853 0.170339 GGTTGGCTGCGTTTATGGAC 59.830 55.000 0.00 0.00 0.00 4.02
3189 8961 7.501892 ACACCAAAAATTGATGTTTATGGCTTT 59.498 29.630 0.00 0.00 0.00 3.51
3267 9039 2.918712 ACAACACTAGAAGCAGCAGT 57.081 45.000 0.00 0.00 0.00 4.40
3286 9058 4.253685 CAGTACCAGGTACCAGAATGTTG 58.746 47.826 24.13 10.85 39.58 3.33
3287 9059 3.908103 AGTACCAGGTACCAGAATGTTGT 59.092 43.478 24.13 0.82 39.58 3.32
3288 9060 3.140325 ACCAGGTACCAGAATGTTGTG 57.860 47.619 15.94 0.00 0.00 3.33
3390 9162 4.077822 ACTTCAATTTGGAAGAGGCTGAG 58.922 43.478 11.40 0.00 45.66 3.35
3466 9238 0.252330 TATGGGTGAAGTGGTCCGGA 60.252 55.000 0.00 0.00 0.00 5.14
3534 9306 3.397482 ACTTGCAGCTCTAACAGAACAG 58.603 45.455 0.00 0.00 0.00 3.16
3602 9376 6.143919 TGCTTCACATACGATCGATGTTATTC 59.856 38.462 24.34 14.30 35.31 1.75
3618 9407 8.746922 GATGTTATTCATCTTTGTTTCAGCAA 57.253 30.769 0.00 0.00 46.64 3.91
3619 9408 7.928908 TGTTATTCATCTTTGTTTCAGCAAC 57.071 32.000 0.00 0.00 35.71 4.17
3620 9409 7.715657 TGTTATTCATCTTTGTTTCAGCAACT 58.284 30.769 0.00 0.00 36.21 3.16
3621 9410 8.196771 TGTTATTCATCTTTGTTTCAGCAACTT 58.803 29.630 0.00 0.00 36.21 2.66
3622 9411 8.694394 GTTATTCATCTTTGTTTCAGCAACTTC 58.306 33.333 0.00 0.00 36.21 3.01
3623 9412 6.455360 TTCATCTTTGTTTCAGCAACTTCT 57.545 33.333 0.00 0.00 36.21 2.85
3624 9413 6.064846 TCATCTTTGTTTCAGCAACTTCTC 57.935 37.500 0.00 0.00 36.21 2.87
3709 9502 9.541143 AAACCATCTGTTATTTAGGTTTTTGTG 57.459 29.630 0.00 0.00 44.40 3.33
3711 9504 8.700973 ACCATCTGTTATTTAGGTTTTTGTGTT 58.299 29.630 0.00 0.00 0.00 3.32
3712 9505 9.191995 CCATCTGTTATTTAGGTTTTTGTGTTC 57.808 33.333 0.00 0.00 0.00 3.18
3714 9507 9.965824 ATCTGTTATTTAGGTTTTTGTGTTCTG 57.034 29.630 0.00 0.00 0.00 3.02
3717 9510 8.962679 TGTTATTTAGGTTTTTGTGTTCTGAGT 58.037 29.630 0.00 0.00 0.00 3.41
3718 9511 9.233232 GTTATTTAGGTTTTTGTGTTCTGAGTG 57.767 33.333 0.00 0.00 0.00 3.51
3719 9512 3.782889 AGGTTTTTGTGTTCTGAGTGC 57.217 42.857 0.00 0.00 0.00 4.40
3720 9513 2.097466 AGGTTTTTGTGTTCTGAGTGCG 59.903 45.455 0.00 0.00 0.00 5.34
3725 9518 0.387565 TGTGTTCTGAGTGCGTGCTA 59.612 50.000 0.00 0.00 0.00 3.49
3726 9519 0.784778 GTGTTCTGAGTGCGTGCTAC 59.215 55.000 0.00 0.00 0.00 3.58
3727 9520 0.673985 TGTTCTGAGTGCGTGCTACT 59.326 50.000 0.00 0.00 0.00 2.57
3728 9521 1.883926 TGTTCTGAGTGCGTGCTACTA 59.116 47.619 0.00 0.00 0.00 1.82
3730 9523 2.631418 TCTGAGTGCGTGCTACTAAC 57.369 50.000 0.00 0.00 0.00 2.34
3731 9524 1.883926 TCTGAGTGCGTGCTACTAACA 59.116 47.619 0.00 0.00 0.00 2.41
3732 9525 2.295070 TCTGAGTGCGTGCTACTAACAA 59.705 45.455 0.00 0.00 0.00 2.83
3733 9526 2.400399 TGAGTGCGTGCTACTAACAAC 58.600 47.619 0.00 0.00 0.00 3.32
3735 9528 3.057734 GAGTGCGTGCTACTAACAACTT 58.942 45.455 0.00 0.00 0.00 2.66
3737 9530 3.057734 GTGCGTGCTACTAACAACTTCT 58.942 45.455 0.00 0.00 0.00 2.85
3738 9531 3.121445 GTGCGTGCTACTAACAACTTCTC 59.879 47.826 0.00 0.00 0.00 2.87
3739 9532 3.243602 TGCGTGCTACTAACAACTTCTCA 60.244 43.478 0.00 0.00 0.00 3.27
3740 9533 3.365220 GCGTGCTACTAACAACTTCTCAG 59.635 47.826 0.00 0.00 0.00 3.35
3742 9535 5.220381 CGTGCTACTAACAACTTCTCAGAA 58.780 41.667 0.00 0.00 0.00 3.02
3743 9536 5.690409 CGTGCTACTAACAACTTCTCAGAAA 59.310 40.000 0.00 0.00 0.00 2.52
3744 9537 6.200286 CGTGCTACTAACAACTTCTCAGAAAA 59.800 38.462 0.00 0.00 0.00 2.29
3750 9551 2.540101 ACAACTTCTCAGAAAAGCGTCG 59.460 45.455 0.00 0.00 0.00 5.12
3758 9559 0.032130 AGAAAAGCGTCGCTGAGTGA 59.968 50.000 22.50 0.00 39.62 3.41
3759 9560 1.071605 GAAAAGCGTCGCTGAGTGAT 58.928 50.000 22.50 0.00 39.62 3.06
3761 9562 0.319900 AAAGCGTCGCTGAGTGATGT 60.320 50.000 22.50 0.00 39.62 3.06
3767 9568 1.723542 GTCGCTGAGTGATGTGTTGAG 59.276 52.381 0.00 0.00 0.00 3.02
3774 9577 5.729732 GCTGAGTGATGTGTTGAGCATTATG 60.730 44.000 0.00 0.00 0.00 1.90
3776 9579 5.352293 TGAGTGATGTGTTGAGCATTATGAC 59.648 40.000 0.00 0.00 0.00 3.06
3778 9581 4.093408 GTGATGTGTTGAGCATTATGACGT 59.907 41.667 0.00 0.00 0.00 4.34
3784 9587 4.513318 TGTTGAGCATTATGACGTTGTTGA 59.487 37.500 0.00 0.00 0.00 3.18
3790 9593 6.676950 AGCATTATGACGTTGTTGATTTTCA 58.323 32.000 0.00 0.00 0.00 2.69
3799 9602 6.438763 ACGTTGTTGATTTTCATTCTTCTCC 58.561 36.000 0.00 0.00 0.00 3.71
3801 9604 6.514870 CGTTGTTGATTTTCATTCTTCTCCCA 60.515 38.462 0.00 0.00 0.00 4.37
3802 9605 6.331369 TGTTGATTTTCATTCTTCTCCCAC 57.669 37.500 0.00 0.00 0.00 4.61
3809 9612 5.789643 TTCATTCTTCTCCCACAAAAAGG 57.210 39.130 0.00 0.00 0.00 3.11
3812 9615 5.660864 TCATTCTTCTCCCACAAAAAGGTTT 59.339 36.000 0.00 0.00 0.00 3.27
3839 9642 4.893424 TTTACTTGCTGCTCTCGTTTTT 57.107 36.364 0.00 0.00 0.00 1.94
3867 9670 9.739276 TTTCATATTTCCTGTTCTGACAATAGT 57.261 29.630 0.00 0.00 34.85 2.12
3868 9671 8.722480 TCATATTTCCTGTTCTGACAATAGTG 57.278 34.615 0.00 0.00 34.85 2.74
3870 9673 3.334583 TCCTGTTCTGACAATAGTGGC 57.665 47.619 0.00 0.00 34.85 5.01
3871 9674 2.637382 TCCTGTTCTGACAATAGTGGCA 59.363 45.455 0.00 0.00 41.98 4.92
4059 9871 1.414158 TCCCTAGCTCAAATCCCTCG 58.586 55.000 0.00 0.00 0.00 4.63
4069 9881 4.367450 CTCAAATCCCTCGAATCTCAGAC 58.633 47.826 0.00 0.00 0.00 3.51
4076 9888 4.081642 TCCCTCGAATCTCAGACGATTTTT 60.082 41.667 0.00 0.00 33.96 1.94
4085 9897 4.092821 TCTCAGACGATTTTTAACATGGCG 59.907 41.667 0.00 0.00 0.00 5.69
4135 9947 1.073284 ACCTTGGTGACGGCTAATTGT 59.927 47.619 0.00 0.00 0.00 2.71
4166 9978 1.423845 CCGTGATTTACTGCCGTGC 59.576 57.895 0.00 0.00 0.00 5.34
4203 10031 0.879400 GAGACCTGCGGCATCATCTG 60.879 60.000 13.50 0.00 0.00 2.90
4260 10089 1.073897 GCCTGTTGAACTGCCTCCT 59.926 57.895 0.00 0.00 0.00 3.69
4265 10094 0.108585 GTTGAACTGCCTCCTGGTGA 59.891 55.000 0.00 0.00 35.27 4.02
4275 10104 1.406614 CCTCCTGGTGAATCTGTGCTC 60.407 57.143 0.00 0.00 0.00 4.26
4294 10155 1.072666 CTCGCGGAAAAATTGCTGGC 61.073 55.000 6.13 0.00 0.00 4.85
4378 10247 0.036164 ATACTTGTGGCTGCCGTTGA 59.964 50.000 14.98 0.00 0.00 3.18
4391 10260 1.265905 GCCGTTGAAGAACCGTGATTT 59.734 47.619 0.00 0.00 0.00 2.17
4469 10338 0.592637 TGTGCATTTGAGAGCAACCG 59.407 50.000 0.00 0.00 43.20 4.44
4508 10399 2.637872 TGGCTAGTACCAACTCTGCTTT 59.362 45.455 0.00 0.00 36.55 3.51
4509 10400 3.003480 GGCTAGTACCAACTCTGCTTTG 58.997 50.000 0.00 0.00 37.15 2.77
4510 10401 3.557264 GGCTAGTACCAACTCTGCTTTGT 60.557 47.826 0.00 0.00 37.15 2.83
4511 10402 4.322499 GGCTAGTACCAACTCTGCTTTGTA 60.322 45.833 0.00 0.00 37.15 2.41
4512 10403 4.626172 GCTAGTACCAACTCTGCTTTGTAC 59.374 45.833 0.00 0.00 37.15 2.90
4513 10404 4.957684 AGTACCAACTCTGCTTTGTACT 57.042 40.909 0.00 0.00 0.00 2.73
4514 10405 4.884247 AGTACCAACTCTGCTTTGTACTC 58.116 43.478 0.00 0.00 0.00 2.59
4515 10406 3.838244 ACCAACTCTGCTTTGTACTCA 57.162 42.857 0.00 0.00 0.00 3.41
4516 10407 3.733337 ACCAACTCTGCTTTGTACTCAG 58.267 45.455 0.00 0.00 0.00 3.35
4517 10408 2.481952 CCAACTCTGCTTTGTACTCAGC 59.518 50.000 9.28 9.28 0.00 4.26
4518 10409 3.397482 CAACTCTGCTTTGTACTCAGCT 58.603 45.455 15.27 0.00 0.00 4.24
4519 10410 3.311486 ACTCTGCTTTGTACTCAGCTC 57.689 47.619 15.27 0.00 0.00 4.09
4526 10417 3.612004 GCTTTGTACTCAGCTCGTACTGT 60.612 47.826 18.54 0.00 38.39 3.55
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 2.170607 TGGAATAGGCTGCCTCTTACAC 59.829 50.000 27.16 15.01 34.61 2.90
10 11 2.170607 GTGGAATAGGCTGCCTCTTACA 59.829 50.000 27.16 25.02 34.61 2.41
11 12 2.436173 AGTGGAATAGGCTGCCTCTTAC 59.564 50.000 27.16 22.57 34.61 2.34
14 15 1.127343 GAGTGGAATAGGCTGCCTCT 58.873 55.000 27.16 15.03 34.61 3.69
15 16 1.127343 AGAGTGGAATAGGCTGCCTC 58.873 55.000 27.16 11.44 34.61 4.70
16 17 2.478872 TAGAGTGGAATAGGCTGCCT 57.521 50.000 26.52 26.52 37.71 4.75
17 18 3.051081 CATAGAGTGGAATAGGCTGCC 57.949 52.381 11.65 11.65 0.00 4.85
23 24 8.203563 TGCATAGCACCCATAGAGTGGAATAG 62.204 46.154 0.00 0.00 41.65 1.73
24 25 6.460055 TGCATAGCACCCATAGAGTGGAATA 61.460 44.000 0.00 0.00 41.65 1.75
25 26 5.735931 TGCATAGCACCCATAGAGTGGAAT 61.736 45.833 0.00 0.00 41.65 3.01
27 28 2.959171 TGCATAGCACCCATAGAGTGGA 60.959 50.000 0.00 0.00 41.65 4.02
29 30 2.916702 TGCATAGCACCCATAGAGTG 57.083 50.000 0.00 0.00 38.30 3.51
30 31 5.768980 ATAATGCATAGCACCCATAGAGT 57.231 39.130 0.00 0.00 43.04 3.24
31 32 7.458409 AAAATAATGCATAGCACCCATAGAG 57.542 36.000 0.00 0.00 43.04 2.43
37 38 9.586435 GGATAAATAAAATAATGCATAGCACCC 57.414 33.333 0.00 0.00 43.04 4.61
54 55 8.593945 AGCATTTCCAAGTTCAGGATAAATAA 57.406 30.769 0.00 0.00 34.56 1.40
56 57 8.636213 CATAGCATTTCCAAGTTCAGGATAAAT 58.364 33.333 0.00 0.00 34.56 1.40
61 62 5.178096 TCATAGCATTTCCAAGTTCAGGA 57.822 39.130 0.00 0.00 0.00 3.86
62 63 4.337555 CCTCATAGCATTTCCAAGTTCAGG 59.662 45.833 0.00 0.00 0.00 3.86
64 65 4.018506 TCCCTCATAGCATTTCCAAGTTCA 60.019 41.667 0.00 0.00 0.00 3.18
65 66 4.526970 TCCCTCATAGCATTTCCAAGTTC 58.473 43.478 0.00 0.00 0.00 3.01
68 69 4.428294 TCTCCCTCATAGCATTTCCAAG 57.572 45.455 0.00 0.00 0.00 3.61
69 70 4.018506 TGTTCTCCCTCATAGCATTTCCAA 60.019 41.667 0.00 0.00 0.00 3.53
70 71 3.523157 TGTTCTCCCTCATAGCATTTCCA 59.477 43.478 0.00 0.00 0.00 3.53
71 72 4.133078 CTGTTCTCCCTCATAGCATTTCC 58.867 47.826 0.00 0.00 0.00 3.13
72 73 3.563390 GCTGTTCTCCCTCATAGCATTTC 59.437 47.826 0.00 0.00 0.00 2.17
73 74 3.549794 GCTGTTCTCCCTCATAGCATTT 58.450 45.455 0.00 0.00 0.00 2.32
75 76 1.419387 GGCTGTTCTCCCTCATAGCAT 59.581 52.381 0.00 0.00 33.05 3.79
78 79 1.202627 GCAGGCTGTTCTCCCTCATAG 60.203 57.143 17.16 0.00 0.00 2.23
80 81 1.606531 GCAGGCTGTTCTCCCTCAT 59.393 57.895 17.16 0.00 0.00 2.90
82 83 2.270527 GGCAGGCTGTTCTCCCTC 59.729 66.667 17.16 0.00 0.00 4.30
84 85 2.045536 CTGGCAGGCTGTTCTCCC 60.046 66.667 17.16 8.75 0.00 4.30
88 89 0.036875 ACCTAACTGGCAGGCTGTTC 59.963 55.000 20.60 9.54 40.22 3.18
90 91 0.036875 GAACCTAACTGGCAGGCTGT 59.963 55.000 20.34 7.40 40.22 4.40
91 92 0.678048 GGAACCTAACTGGCAGGCTG 60.678 60.000 20.34 10.94 40.22 4.85
92 93 0.842467 AGGAACCTAACTGGCAGGCT 60.842 55.000 20.34 8.05 40.22 4.58
93 94 0.678048 CAGGAACCTAACTGGCAGGC 60.678 60.000 20.34 0.00 40.22 4.85
95 96 1.625818 AGTCAGGAACCTAACTGGCAG 59.374 52.381 14.16 14.16 41.61 4.85
96 97 1.729586 AGTCAGGAACCTAACTGGCA 58.270 50.000 0.00 0.00 41.61 4.92
103 104 3.185880 AGCAACCTAGTCAGGAACCTA 57.814 47.619 0.00 0.00 45.91 3.08
104 105 2.031495 AGCAACCTAGTCAGGAACCT 57.969 50.000 0.00 0.00 45.91 3.50
105 106 2.861147 AAGCAACCTAGTCAGGAACC 57.139 50.000 0.00 0.00 45.91 3.62
106 107 3.075148 GGAAAGCAACCTAGTCAGGAAC 58.925 50.000 0.00 0.00 45.91 3.62
107 108 2.979678 AGGAAAGCAACCTAGTCAGGAA 59.020 45.455 0.00 0.00 45.91 3.36
108 109 2.621070 AGGAAAGCAACCTAGTCAGGA 58.379 47.619 0.00 0.00 45.91 3.86
112 113 5.299531 ACAGAAAAAGGAAAGCAACCTAGTC 59.700 40.000 0.00 0.00 36.67 2.59
114 115 5.774498 ACAGAAAAAGGAAAGCAACCTAG 57.226 39.130 0.00 0.00 36.67 3.02
115 116 6.538945 AAACAGAAAAAGGAAAGCAACCTA 57.461 33.333 0.00 0.00 36.67 3.08
116 117 5.420725 AAACAGAAAAAGGAAAGCAACCT 57.579 34.783 0.00 0.00 39.69 3.50
117 118 6.494893 AAAAACAGAAAAAGGAAAGCAACC 57.505 33.333 0.00 0.00 0.00 3.77
145 146 6.036577 TGTCAGAAAGAAAGCAACCTTTTT 57.963 33.333 0.00 0.00 41.22 1.94
148 149 5.859205 AATGTCAGAAAGAAAGCAACCTT 57.141 34.783 0.00 0.00 0.00 3.50
151 152 6.892310 ACAAAATGTCAGAAAGAAAGCAAC 57.108 33.333 0.00 0.00 0.00 4.17
159 160 8.514594 TGGCTAATTCTACAAAATGTCAGAAAG 58.485 33.333 0.00 0.00 30.17 2.62
162 163 6.374333 GGTGGCTAATTCTACAAAATGTCAGA 59.626 38.462 0.00 0.00 0.00 3.27
164 165 6.007076 TGGTGGCTAATTCTACAAAATGTCA 58.993 36.000 0.00 0.00 0.00 3.58
166 167 6.010219 AGTGGTGGCTAATTCTACAAAATGT 58.990 36.000 0.00 0.00 0.00 2.71
168 169 5.105756 GCAGTGGTGGCTAATTCTACAAAAT 60.106 40.000 0.00 0.00 0.00 1.82
171 172 3.343617 GCAGTGGTGGCTAATTCTACAA 58.656 45.455 0.00 0.00 0.00 2.41
174 175 2.710096 GGCAGTGGTGGCTAATTCTA 57.290 50.000 0.00 0.00 45.85 2.10
191 192 1.930908 GCATCACTCTGGCAAGTGGC 61.931 60.000 21.41 16.42 45.47 5.01
192 193 0.607217 TGCATCACTCTGGCAAGTGG 60.607 55.000 21.41 12.43 45.47 4.00
196 197 0.978907 TCTCTGCATCACTCTGGCAA 59.021 50.000 0.00 0.00 37.06 4.52
198 199 0.822811 TCTCTCTGCATCACTCTGGC 59.177 55.000 0.00 0.00 0.00 4.85
199 200 2.101783 ACTCTCTCTGCATCACTCTGG 58.898 52.381 0.00 0.00 0.00 3.86
200 201 3.193056 TCAACTCTCTCTGCATCACTCTG 59.807 47.826 0.00 0.00 0.00 3.35
201 202 3.193267 GTCAACTCTCTCTGCATCACTCT 59.807 47.826 0.00 0.00 0.00 3.24
202 203 3.193267 AGTCAACTCTCTCTGCATCACTC 59.807 47.826 0.00 0.00 0.00 3.51
203 204 3.056678 CAGTCAACTCTCTCTGCATCACT 60.057 47.826 0.00 0.00 0.00 3.41
206 207 3.193267 AGTCAGTCAACTCTCTCTGCATC 59.807 47.826 0.00 0.00 0.00 3.91
209 210 3.005261 TGAAGTCAGTCAACTCTCTCTGC 59.995 47.826 0.00 0.00 0.00 4.26
210 211 4.037327 TGTGAAGTCAGTCAACTCTCTCTG 59.963 45.833 0.00 0.00 0.00 3.35
211 212 4.211125 TGTGAAGTCAGTCAACTCTCTCT 58.789 43.478 0.00 0.00 0.00 3.10
215 216 5.491982 ACTTTTGTGAAGTCAGTCAACTCT 58.508 37.500 0.00 0.00 0.00 3.24
216 217 5.500931 CGACTTTTGTGAAGTCAGTCAACTC 60.501 44.000 16.42 0.00 45.14 3.01
217 218 4.330074 CGACTTTTGTGAAGTCAGTCAACT 59.670 41.667 16.42 0.00 45.14 3.16
219 220 4.250464 ACGACTTTTGTGAAGTCAGTCAA 58.750 39.130 16.42 0.00 45.14 3.18
220 221 3.857052 ACGACTTTTGTGAAGTCAGTCA 58.143 40.909 16.42 0.00 45.14 3.41
221 222 4.859629 AACGACTTTTGTGAAGTCAGTC 57.140 40.909 16.42 0.00 45.14 3.51
224 225 5.501736 CGATCAAACGACTTTTGTGAAGTCA 60.502 40.000 16.42 0.50 45.14 3.41
225 226 4.898488 CGATCAAACGACTTTTGTGAAGTC 59.102 41.667 8.48 8.48 44.47 3.01
226 227 4.569162 TCGATCAAACGACTTTTGTGAAGT 59.431 37.500 4.53 0.00 44.47 3.01
238 239 0.812549 TCATCCGGTCGATCAAACGA 59.187 50.000 0.00 0.00 40.00 3.85
240 241 2.159226 ACTCTCATCCGGTCGATCAAAC 60.159 50.000 0.00 0.00 0.00 2.93
241 242 2.100197 ACTCTCATCCGGTCGATCAAA 58.900 47.619 0.00 0.00 0.00 2.69
242 243 1.405463 CACTCTCATCCGGTCGATCAA 59.595 52.381 0.00 0.00 0.00 2.57
243 244 1.025041 CACTCTCATCCGGTCGATCA 58.975 55.000 0.00 0.00 0.00 2.92
244 245 1.002251 GTCACTCTCATCCGGTCGATC 60.002 57.143 0.00 0.00 0.00 3.69
246 247 0.035343 AGTCACTCTCATCCGGTCGA 60.035 55.000 0.00 0.00 0.00 4.20
248 249 0.457851 CCAGTCACTCTCATCCGGTC 59.542 60.000 0.00 0.00 0.00 4.79
249 250 0.972983 CCCAGTCACTCTCATCCGGT 60.973 60.000 0.00 0.00 0.00 5.28
251 252 0.684479 TCCCCAGTCACTCTCATCCG 60.684 60.000 0.00 0.00 0.00 4.18
252 253 1.573108 TTCCCCAGTCACTCTCATCC 58.427 55.000 0.00 0.00 0.00 3.51
256 257 3.769844 TGACTATTTCCCCAGTCACTCTC 59.230 47.826 0.44 0.00 44.70 3.20
257 258 3.772025 CTGACTATTTCCCCAGTCACTCT 59.228 47.826 0.44 0.00 44.70 3.24
262 263 2.501723 TCAGCTGACTATTTCCCCAGTC 59.498 50.000 13.74 0.00 41.31 3.51
264 265 3.054802 AGTTCAGCTGACTATTTCCCCAG 60.055 47.826 18.03 0.00 0.00 4.45
266 267 3.055094 TGAGTTCAGCTGACTATTTCCCC 60.055 47.826 18.03 4.32 0.00 4.81
267 268 4.207891 TGAGTTCAGCTGACTATTTCCC 57.792 45.455 18.03 4.96 0.00 3.97
269 270 5.174761 CGCTATGAGTTCAGCTGACTATTTC 59.825 44.000 18.03 10.14 35.57 2.17
270 271 5.046529 CGCTATGAGTTCAGCTGACTATTT 58.953 41.667 18.03 4.39 35.57 1.40
272 273 3.885901 TCGCTATGAGTTCAGCTGACTAT 59.114 43.478 18.03 10.74 35.57 2.12
273 274 3.279434 TCGCTATGAGTTCAGCTGACTA 58.721 45.455 18.03 0.00 35.57 2.59
276 277 3.131046 TCATTCGCTATGAGTTCAGCTGA 59.869 43.478 13.74 13.74 38.35 4.26
277 278 3.451526 TCATTCGCTATGAGTTCAGCTG 58.548 45.455 7.63 7.63 38.35 4.24
278 279 3.808466 TCATTCGCTATGAGTTCAGCT 57.192 42.857 0.00 0.00 38.35 4.24
287 288 2.479275 CCAGCATGTCTCATTCGCTATG 59.521 50.000 0.00 0.00 35.45 2.23
288 289 2.103771 ACCAGCATGTCTCATTCGCTAT 59.896 45.455 0.00 0.00 0.00 2.97
291 292 0.654683 GACCAGCATGTCTCATTCGC 59.345 55.000 0.00 0.00 32.39 4.70
292 293 1.293924 GGACCAGCATGTCTCATTCG 58.706 55.000 5.73 0.00 35.54 3.34
294 295 2.885135 TTGGACCAGCATGTCTCATT 57.115 45.000 0.00 0.00 35.54 2.57
296 297 1.629861 TCATTGGACCAGCATGTCTCA 59.370 47.619 6.14 0.67 35.54 3.27
297 298 2.408271 TCATTGGACCAGCATGTCTC 57.592 50.000 6.14 0.00 35.54 3.36
298 299 2.440409 GTTCATTGGACCAGCATGTCT 58.560 47.619 6.14 0.00 35.54 3.41
299 300 1.474077 GGTTCATTGGACCAGCATGTC 59.526 52.381 9.41 0.00 37.14 3.06
303 304 0.251297 CCAGGTTCATTGGACCAGCA 60.251 55.000 16.63 0.00 39.71 4.41
304 305 0.967380 CCCAGGTTCATTGGACCAGC 60.967 60.000 16.63 0.00 39.71 4.85
305 306 0.698238 TCCCAGGTTCATTGGACCAG 59.302 55.000 16.63 8.21 39.71 4.00
307 308 0.698818 AGTCCCAGGTTCATTGGACC 59.301 55.000 5.94 5.94 46.80 4.46
309 310 2.445145 TCAAAGTCCCAGGTTCATTGGA 59.555 45.455 0.00 0.00 37.96 3.53
311 312 3.254166 CAGTCAAAGTCCCAGGTTCATTG 59.746 47.826 0.00 0.00 0.00 2.82
312 313 3.490348 CAGTCAAAGTCCCAGGTTCATT 58.510 45.455 0.00 0.00 0.00 2.57
313 314 2.224867 CCAGTCAAAGTCCCAGGTTCAT 60.225 50.000 0.00 0.00 0.00 2.57
314 315 1.142870 CCAGTCAAAGTCCCAGGTTCA 59.857 52.381 0.00 0.00 0.00 3.18
316 317 0.178990 GCCAGTCAAAGTCCCAGGTT 60.179 55.000 0.00 0.00 0.00 3.50
318 319 0.111253 AAGCCAGTCAAAGTCCCAGG 59.889 55.000 0.00 0.00 0.00 4.45
319 320 1.202806 TGAAGCCAGTCAAAGTCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
321 322 1.239347 GTGAAGCCAGTCAAAGTCCC 58.761 55.000 0.00 0.00 0.00 4.46
322 323 1.967319 TGTGAAGCCAGTCAAAGTCC 58.033 50.000 0.00 0.00 0.00 3.85
323 324 4.142381 ACTTTTGTGAAGCCAGTCAAAGTC 60.142 41.667 0.00 0.00 32.67 3.01
324 325 3.763897 ACTTTTGTGAAGCCAGTCAAAGT 59.236 39.130 0.00 0.00 32.67 2.66
325 326 4.354587 GACTTTTGTGAAGCCAGTCAAAG 58.645 43.478 0.00 0.00 35.04 2.77
326 327 3.181501 CGACTTTTGTGAAGCCAGTCAAA 60.182 43.478 0.00 0.00 34.67 2.69
327 328 2.354510 CGACTTTTGTGAAGCCAGTCAA 59.645 45.455 0.00 0.00 34.67 3.18
328 329 1.939934 CGACTTTTGTGAAGCCAGTCA 59.060 47.619 0.00 0.00 34.67 3.41
330 331 1.670811 CACGACTTTTGTGAAGCCAGT 59.329 47.619 0.00 0.00 39.73 4.00
331 332 1.670811 ACACGACTTTTGTGAAGCCAG 59.329 47.619 0.00 0.00 39.73 4.85
338 339 1.398451 GCCGATCACACGACTTTTGTG 60.398 52.381 0.00 0.00 44.89 3.33
343 344 0.250124 TTTGGCCGATCACACGACTT 60.250 50.000 0.00 0.00 35.09 3.01
346 347 0.036858 TCATTTGGCCGATCACACGA 60.037 50.000 0.00 0.00 35.09 4.35
348 349 1.453155 ACTCATTTGGCCGATCACAC 58.547 50.000 0.00 0.00 0.00 3.82
349 350 2.198827 AACTCATTTGGCCGATCACA 57.801 45.000 0.00 0.00 0.00 3.58
358 359 2.875296 TCCCCAGTCAAACTCATTTGG 58.125 47.619 0.25 0.00 44.61 3.28
360 361 4.104738 TCTCTTCCCCAGTCAAACTCATTT 59.895 41.667 0.00 0.00 0.00 2.32
361 362 3.652869 TCTCTTCCCCAGTCAAACTCATT 59.347 43.478 0.00 0.00 0.00 2.57
368 369 4.453480 AAAATGTCTCTTCCCCAGTCAA 57.547 40.909 0.00 0.00 0.00 3.18
370 371 5.167303 ACTAAAATGTCTCTTCCCCAGTC 57.833 43.478 0.00 0.00 0.00 3.51
385 386 6.494059 AGTCCCAGGCTCATTTTACTAAAAT 58.506 36.000 1.48 1.48 41.57 1.82
386 387 5.887754 AGTCCCAGGCTCATTTTACTAAAA 58.112 37.500 0.00 0.00 34.41 1.52
388 389 5.514500 AAGTCCCAGGCTCATTTTACTAA 57.486 39.130 0.00 0.00 0.00 2.24
389 390 5.013704 TCAAAGTCCCAGGCTCATTTTACTA 59.986 40.000 0.00 0.00 0.00 1.82
390 391 4.082125 CAAAGTCCCAGGCTCATTTTACT 58.918 43.478 0.00 0.00 0.00 2.24
391 392 4.079253 TCAAAGTCCCAGGCTCATTTTAC 58.921 43.478 0.00 0.00 0.00 2.01
392 393 4.079253 GTCAAAGTCCCAGGCTCATTTTA 58.921 43.478 0.00 0.00 0.00 1.52
393 394 2.893489 GTCAAAGTCCCAGGCTCATTTT 59.107 45.455 0.00 0.00 0.00 1.82
394 395 2.108952 AGTCAAAGTCCCAGGCTCATTT 59.891 45.455 0.00 0.00 0.00 2.32
395 396 1.707427 AGTCAAAGTCCCAGGCTCATT 59.293 47.619 0.00 0.00 0.00 2.57
396 397 1.004044 CAGTCAAAGTCCCAGGCTCAT 59.996 52.381 0.00 0.00 0.00 2.90
397 398 0.397941 CAGTCAAAGTCCCAGGCTCA 59.602 55.000 0.00 0.00 0.00 4.26
398 399 0.322008 CCAGTCAAAGTCCCAGGCTC 60.322 60.000 0.00 0.00 0.00 4.70
400 401 1.973812 GCCAGTCAAAGTCCCAGGC 60.974 63.158 0.00 0.00 0.00 4.85
401 402 0.111253 AAGCCAGTCAAAGTCCCAGG 59.889 55.000 0.00 0.00 0.00 4.45
402 403 1.202806 TGAAGCCAGTCAAAGTCCCAG 60.203 52.381 0.00 0.00 0.00 4.45
403 404 0.843309 TGAAGCCAGTCAAAGTCCCA 59.157 50.000 0.00 0.00 0.00 4.37
404 405 1.239347 GTGAAGCCAGTCAAAGTCCC 58.761 55.000 0.00 0.00 0.00 4.46
405 406 1.967319 TGTGAAGCCAGTCAAAGTCC 58.033 50.000 0.00 0.00 0.00 3.85
406 407 4.354587 CTTTTGTGAAGCCAGTCAAAGTC 58.645 43.478 0.00 0.00 32.67 3.01
408 409 3.709987 CCTTTTGTGAAGCCAGTCAAAG 58.290 45.455 0.00 0.00 32.67 2.77
409 410 2.159114 GCCTTTTGTGAAGCCAGTCAAA 60.159 45.455 0.00 0.00 0.00 2.69
410 411 1.408702 GCCTTTTGTGAAGCCAGTCAA 59.591 47.619 0.00 0.00 0.00 3.18
412 413 1.032014 TGCCTTTTGTGAAGCCAGTC 58.968 50.000 0.00 0.00 0.00 3.51
415 416 1.068895 CACATGCCTTTTGTGAAGCCA 59.931 47.619 0.00 0.00 45.83 4.75
416 417 1.787012 CACATGCCTTTTGTGAAGCC 58.213 50.000 0.00 0.00 45.83 4.35
423 424 2.459060 TGCCAATCACATGCCTTTTG 57.541 45.000 0.00 0.00 0.00 2.44
424 425 3.706600 ATTGCCAATCACATGCCTTTT 57.293 38.095 0.00 0.00 0.00 2.27
426 427 3.962063 TCATATTGCCAATCACATGCCTT 59.038 39.130 0.00 0.00 0.00 4.35
428 429 3.570975 TCTCATATTGCCAATCACATGCC 59.429 43.478 0.00 0.00 0.00 4.40
429 430 4.795268 CTCTCATATTGCCAATCACATGC 58.205 43.478 0.00 0.00 0.00 4.06
430 431 4.612939 CGCTCTCATATTGCCAATCACATG 60.613 45.833 0.00 0.00 0.00 3.21
435 436 3.561310 TGTTCGCTCTCATATTGCCAATC 59.439 43.478 0.00 0.00 0.00 2.67
436 437 3.544684 TGTTCGCTCTCATATTGCCAAT 58.455 40.909 0.00 0.00 0.00 3.16
437 438 2.938451 CTGTTCGCTCTCATATTGCCAA 59.062 45.455 0.00 0.00 0.00 4.52
438 439 2.554142 CTGTTCGCTCTCATATTGCCA 58.446 47.619 0.00 0.00 0.00 4.92
439 440 1.869767 CCTGTTCGCTCTCATATTGCC 59.130 52.381 0.00 0.00 0.00 4.52
440 441 1.869767 CCCTGTTCGCTCTCATATTGC 59.130 52.381 0.00 0.00 0.00 3.56
441 442 3.459232 TCCCTGTTCGCTCTCATATTG 57.541 47.619 0.00 0.00 0.00 1.90
442 443 4.487714 TTTCCCTGTTCGCTCTCATATT 57.512 40.909 0.00 0.00 0.00 1.28
443 444 4.696479 ATTTCCCTGTTCGCTCTCATAT 57.304 40.909 0.00 0.00 0.00 1.78
445 446 4.487714 TTATTTCCCTGTTCGCTCTCAT 57.512 40.909 0.00 0.00 0.00 2.90
447 448 3.810386 GGATTATTTCCCTGTTCGCTCTC 59.190 47.826 0.00 0.00 38.75 3.20
448 449 3.741388 CGGATTATTTCCCTGTTCGCTCT 60.741 47.826 0.00 0.00 42.06 4.09
450 451 2.561569 CGGATTATTTCCCTGTTCGCT 58.438 47.619 0.00 0.00 42.06 4.93
451 452 1.002792 GCGGATTATTTCCCTGTTCGC 60.003 52.381 0.00 0.00 42.06 4.70
452 453 1.602377 GGCGGATTATTTCCCTGTTCG 59.398 52.381 0.00 0.00 42.06 3.95
453 454 1.602377 CGGCGGATTATTTCCCTGTTC 59.398 52.381 0.00 0.00 42.06 3.18
454 455 1.210967 TCGGCGGATTATTTCCCTGTT 59.789 47.619 7.21 0.00 42.06 3.16
456 457 1.602377 GTTCGGCGGATTATTTCCCTG 59.398 52.381 7.21 0.00 42.06 4.45
457 458 1.489230 AGTTCGGCGGATTATTTCCCT 59.511 47.619 7.21 0.00 42.06 4.20
458 459 1.871676 GAGTTCGGCGGATTATTTCCC 59.128 52.381 7.21 0.00 42.06 3.97
459 460 2.557317 TGAGTTCGGCGGATTATTTCC 58.443 47.619 7.21 0.00 41.59 3.13
460 461 4.527564 CAATGAGTTCGGCGGATTATTTC 58.472 43.478 7.21 0.00 0.00 2.17
461 462 3.243068 GCAATGAGTTCGGCGGATTATTT 60.243 43.478 7.21 0.00 0.00 1.40
463 464 1.873591 GCAATGAGTTCGGCGGATTAT 59.126 47.619 7.21 0.00 0.00 1.28
465 466 0.676466 TGCAATGAGTTCGGCGGATT 60.676 50.000 7.21 0.00 0.00 3.01
466 467 0.676466 TTGCAATGAGTTCGGCGGAT 60.676 50.000 7.21 0.00 0.00 4.18
468 469 0.039617 TTTTGCAATGAGTTCGGCGG 60.040 50.000 7.21 0.00 0.00 6.13
469 470 1.069296 TCTTTTGCAATGAGTTCGGCG 60.069 47.619 0.00 0.00 0.00 6.46
471 472 4.691860 ATCTCTTTTGCAATGAGTTCGG 57.308 40.909 21.56 5.37 35.04 4.30
472 473 6.129009 CCAAAATCTCTTTTGCAATGAGTTCG 60.129 38.462 21.56 13.15 46.47 3.95
473 474 6.703165 ACCAAAATCTCTTTTGCAATGAGTTC 59.297 34.615 21.56 0.00 46.47 3.01
474 475 6.585416 ACCAAAATCTCTTTTGCAATGAGTT 58.415 32.000 21.56 14.69 46.47 3.01
475 476 6.165700 ACCAAAATCTCTTTTGCAATGAGT 57.834 33.333 21.56 11.65 46.47 3.41
476 477 6.702723 TGAACCAAAATCTCTTTTGCAATGAG 59.297 34.615 18.40 18.40 46.47 2.90
477 478 6.580788 TGAACCAAAATCTCTTTTGCAATGA 58.419 32.000 0.00 0.92 46.47 2.57
480 481 7.046652 TCATTGAACCAAAATCTCTTTTGCAA 58.953 30.769 0.00 0.00 46.47 4.08
482 483 6.347160 GCTCATTGAACCAAAATCTCTTTTGC 60.347 38.462 5.50 0.00 46.47 3.68
484 485 6.042437 AGGCTCATTGAACCAAAATCTCTTTT 59.958 34.615 8.74 0.00 34.90 2.27
487 488 4.461781 CAGGCTCATTGAACCAAAATCTCT 59.538 41.667 8.74 0.00 0.00 3.10
489 490 4.410099 TCAGGCTCATTGAACCAAAATCT 58.590 39.130 8.74 0.00 0.00 2.40
490 491 4.741342 CTCAGGCTCATTGAACCAAAATC 58.259 43.478 8.74 0.00 0.00 2.17
492 493 2.297033 GCTCAGGCTCATTGAACCAAAA 59.703 45.455 8.74 0.00 35.22 2.44
494 495 1.538047 GCTCAGGCTCATTGAACCAA 58.462 50.000 8.74 0.00 35.22 3.67
497 498 1.093159 CAGGCTCAGGCTCATTGAAC 58.907 55.000 0.00 0.00 35.88 3.18
498 499 0.694771 ACAGGCTCAGGCTCATTGAA 59.305 50.000 0.00 0.00 35.88 2.69
499 500 0.035725 CACAGGCTCAGGCTCATTGA 60.036 55.000 0.00 0.00 35.88 2.57
500 501 1.654954 GCACAGGCTCAGGCTCATTG 61.655 60.000 0.00 0.00 35.88 2.82
501 502 1.378250 GCACAGGCTCAGGCTCATT 60.378 57.895 0.00 0.00 35.88 2.57
503 504 2.743126 CTTGCACAGGCTCAGGCTCA 62.743 60.000 0.00 0.00 41.91 4.26
504 505 2.033141 TTGCACAGGCTCAGGCTC 59.967 61.111 0.00 0.00 41.91 4.70
506 507 0.606401 TTACTTGCACAGGCTCAGGC 60.606 55.000 0.00 0.00 41.91 4.85
509 510 3.485394 TGAAATTACTTGCACAGGCTCA 58.515 40.909 0.00 0.00 41.91 4.26
511 512 4.082026 GGAATGAAATTACTTGCACAGGCT 60.082 41.667 0.00 0.00 36.07 4.58
512 513 4.176271 GGAATGAAATTACTTGCACAGGC 58.824 43.478 0.00 0.00 36.07 4.85
522 523 6.881602 ACTCACCTCTTCAGGAATGAAATTAC 59.118 38.462 0.00 0.00 43.65 1.89
523 524 7.020827 ACTCACCTCTTCAGGAATGAAATTA 57.979 36.000 0.00 0.00 43.65 1.40
525 526 5.250313 AGACTCACCTCTTCAGGAATGAAAT 59.750 40.000 0.00 0.00 43.65 2.17
527 528 4.020751 CAGACTCACCTCTTCAGGAATGAA 60.021 45.833 0.00 0.00 43.65 2.57
528 529 3.513119 CAGACTCACCTCTTCAGGAATGA 59.487 47.826 0.00 0.00 43.65 2.57
529 530 3.513119 TCAGACTCACCTCTTCAGGAATG 59.487 47.826 0.00 0.00 43.65 2.67
530 531 3.784178 TCAGACTCACCTCTTCAGGAAT 58.216 45.455 0.00 0.00 43.65 3.01
531 532 3.244887 TCAGACTCACCTCTTCAGGAA 57.755 47.619 0.00 0.00 43.65 3.36
533 534 3.383185 GGTATCAGACTCACCTCTTCAGG 59.617 52.174 0.00 0.00 46.87 3.86
537 538 2.379972 CCGGTATCAGACTCACCTCTT 58.620 52.381 0.00 0.00 0.00 2.85
538 539 2.024825 GCCGGTATCAGACTCACCTCT 61.025 57.143 1.90 0.00 0.00 3.69
540 541 0.324368 TGCCGGTATCAGACTCACCT 60.324 55.000 1.90 0.00 0.00 4.00
541 542 0.179108 GTGCCGGTATCAGACTCACC 60.179 60.000 1.90 0.00 0.00 4.02
542 543 0.818296 AGTGCCGGTATCAGACTCAC 59.182 55.000 1.90 0.00 0.00 3.51
544 545 2.299521 AGTAGTGCCGGTATCAGACTC 58.700 52.381 1.90 0.00 0.00 3.36
545 546 2.438800 AGTAGTGCCGGTATCAGACT 57.561 50.000 1.90 0.00 0.00 3.24
546 547 2.292845 GGTAGTAGTGCCGGTATCAGAC 59.707 54.545 1.90 0.00 0.00 3.51
547 548 2.092267 TGGTAGTAGTGCCGGTATCAGA 60.092 50.000 1.90 0.00 0.00 3.27
548 549 2.034305 GTGGTAGTAGTGCCGGTATCAG 59.966 54.545 1.90 0.00 0.00 2.90
549 550 2.026641 GTGGTAGTAGTGCCGGTATCA 58.973 52.381 1.90 0.00 0.00 2.15
550 551 1.339291 GGTGGTAGTAGTGCCGGTATC 59.661 57.143 1.90 0.00 0.00 2.24
552 553 0.039472 TGGTGGTAGTAGTGCCGGTA 59.961 55.000 1.90 0.00 0.00 4.02
553 554 1.228956 TGGTGGTAGTAGTGCCGGT 60.229 57.895 1.90 0.00 0.00 5.28
554 555 1.217244 GTGGTGGTAGTAGTGCCGG 59.783 63.158 0.00 0.00 0.00 6.13
555 556 1.217244 GGTGGTGGTAGTAGTGCCG 59.783 63.158 0.00 0.00 0.00 5.69
556 557 1.600638 GGGTGGTGGTAGTAGTGCC 59.399 63.158 0.00 0.00 0.00 5.01
557 558 0.908180 AGGGGTGGTGGTAGTAGTGC 60.908 60.000 0.00 0.00 0.00 4.40
558 559 1.652947 AAGGGGTGGTGGTAGTAGTG 58.347 55.000 0.00 0.00 0.00 2.74
559 560 2.374170 CAAAAGGGGTGGTGGTAGTAGT 59.626 50.000 0.00 0.00 0.00 2.73
572 6058 5.060506 GGAACACAAATTAACCAAAAGGGG 58.939 41.667 0.00 0.00 42.91 4.79
604 6090 7.173218 TGGCAAAGTTTAACACATAAGAGAGAG 59.827 37.037 0.00 0.00 0.00 3.20
606 6092 7.202016 TGGCAAAGTTTAACACATAAGAGAG 57.798 36.000 0.00 0.00 0.00 3.20
607 6093 7.284489 AGTTGGCAAAGTTTAACACATAAGAGA 59.716 33.333 0.00 0.00 0.00 3.10
608 6094 7.425606 AGTTGGCAAAGTTTAACACATAAGAG 58.574 34.615 0.00 0.00 0.00 2.85
609 6095 7.341445 AGTTGGCAAAGTTTAACACATAAGA 57.659 32.000 0.00 0.00 0.00 2.10
610 6096 8.419076 AAAGTTGGCAAAGTTTAACACATAAG 57.581 30.769 4.75 0.00 37.20 1.73
611 6097 9.871238 TTAAAGTTGGCAAAGTTTAACACATAA 57.129 25.926 18.69 1.86 42.33 1.90
620 6108 6.931840 TGTTGAAGTTAAAGTTGGCAAAGTTT 59.068 30.769 11.38 11.38 41.00 2.66
623 6111 7.538303 AATGTTGAAGTTAAAGTTGGCAAAG 57.462 32.000 0.00 0.00 0.00 2.77
652 6140 3.963428 AGTGTGACCAGACAGGAATAC 57.037 47.619 0.19 0.00 41.22 1.89
654 6142 3.136443 TGAAAGTGTGACCAGACAGGAAT 59.864 43.478 0.19 0.00 41.22 3.01
657 6145 2.620251 TGAAAGTGTGACCAGACAGG 57.380 50.000 0.19 0.00 45.67 4.00
658 6146 4.248859 CCTATGAAAGTGTGACCAGACAG 58.751 47.826 0.19 0.00 0.00 3.51
659 6147 3.007940 CCCTATGAAAGTGTGACCAGACA 59.992 47.826 0.19 0.00 0.00 3.41
660 6148 3.260884 TCCCTATGAAAGTGTGACCAGAC 59.739 47.826 0.00 0.00 0.00 3.51
662 6150 3.866651 CTCCCTATGAAAGTGTGACCAG 58.133 50.000 0.00 0.00 0.00 4.00
664 6152 2.237392 AGCTCCCTATGAAAGTGTGACC 59.763 50.000 0.00 0.00 0.00 4.02
668 6156 3.589288 AGGAAAGCTCCCTATGAAAGTGT 59.411 43.478 5.87 0.00 43.64 3.55
671 6159 3.950395 CCAAGGAAAGCTCCCTATGAAAG 59.050 47.826 7.92 0.00 43.64 2.62
675 6163 2.507471 AGACCAAGGAAAGCTCCCTATG 59.493 50.000 7.92 8.44 43.64 2.23
676 6164 2.852130 AGACCAAGGAAAGCTCCCTAT 58.148 47.619 7.92 0.00 43.64 2.57
677 6165 2.344093 AGACCAAGGAAAGCTCCCTA 57.656 50.000 7.92 0.00 43.64 3.53
678 6166 1.450360 AAGACCAAGGAAAGCTCCCT 58.550 50.000 2.00 2.00 43.64 4.20
679 6167 2.294449 AAAGACCAAGGAAAGCTCCC 57.706 50.000 0.00 0.00 43.64 4.30
680 6168 2.959030 ACAAAAGACCAAGGAAAGCTCC 59.041 45.455 0.00 0.00 42.81 4.70
681 6169 3.381590 ACACAAAAGACCAAGGAAAGCTC 59.618 43.478 0.00 0.00 0.00 4.09
682 6170 3.365472 ACACAAAAGACCAAGGAAAGCT 58.635 40.909 0.00 0.00 0.00 3.74
683 6171 3.801114 ACACAAAAGACCAAGGAAAGC 57.199 42.857 0.00 0.00 0.00 3.51
684 6172 3.865164 GCAACACAAAAGACCAAGGAAAG 59.135 43.478 0.00 0.00 0.00 2.62
685 6173 3.513515 AGCAACACAAAAGACCAAGGAAA 59.486 39.130 0.00 0.00 0.00 3.13
686 6174 3.096092 AGCAACACAAAAGACCAAGGAA 58.904 40.909 0.00 0.00 0.00 3.36
687 6175 2.733956 AGCAACACAAAAGACCAAGGA 58.266 42.857 0.00 0.00 0.00 3.36
688 6176 4.613622 CGATAGCAACACAAAAGACCAAGG 60.614 45.833 0.00 0.00 0.00 3.61
689 6177 4.466828 CGATAGCAACACAAAAGACCAAG 58.533 43.478 0.00 0.00 0.00 3.61
706 6194 6.092092 TCACAAATGCAAATTCAACCGATAG 58.908 36.000 0.00 0.00 0.00 2.08
711 6199 8.254178 TGAATATCACAAATGCAAATTCAACC 57.746 30.769 0.00 0.00 31.05 3.77
712 6200 8.928733 ACTGAATATCACAAATGCAAATTCAAC 58.071 29.630 0.00 0.00 32.42 3.18
722 6210 9.961265 ATATTTGCTCACTGAATATCACAAATG 57.039 29.630 12.41 0.00 37.16 2.32
742 6230 9.956797 CTTTTAAATCCAACTCGCAAATATTTG 57.043 29.630 21.54 21.54 41.03 2.32
746 6234 9.921637 AATTCTTTTAAATCCAACTCGCAAATA 57.078 25.926 0.00 0.00 0.00 1.40
747 6235 8.831715 AATTCTTTTAAATCCAACTCGCAAAT 57.168 26.923 0.00 0.00 0.00 2.32
764 6254 7.308589 GCGAGTGCCATACCATATAATTCTTTT 60.309 37.037 0.00 0.00 33.98 2.27
765 6255 6.149474 GCGAGTGCCATACCATATAATTCTTT 59.851 38.462 0.00 0.00 33.98 2.52
768 6258 5.470845 GCGAGTGCCATACCATATAATTC 57.529 43.478 0.00 0.00 33.98 2.17
788 6278 5.118990 CCCATGGATTACTAATATCTGGCG 58.881 45.833 15.22 0.00 0.00 5.69
798 6288 1.142870 GCAGCCACCCATGGATTACTA 59.857 52.381 15.22 0.00 44.30 1.82
800 6290 0.395586 TGCAGCCACCCATGGATTAC 60.396 55.000 15.22 0.00 44.30 1.89
806 6296 1.170919 GCTAGATGCAGCCACCCATG 61.171 60.000 0.00 0.00 42.31 3.66
808 6298 2.591753 GCTAGATGCAGCCACCCA 59.408 61.111 0.00 0.00 42.31 4.51
815 6305 2.280660 CCAGGCGGCTAGATGCAG 60.281 66.667 12.74 0.00 45.15 4.41
817 6307 2.590007 CACCAGGCGGCTAGATGC 60.590 66.667 12.74 0.00 41.94 3.91
818 6308 1.971505 TTCCACCAGGCGGCTAGATG 61.972 60.000 12.74 10.24 34.57 2.90
819 6309 1.689233 TTCCACCAGGCGGCTAGAT 60.689 57.895 12.74 0.00 34.57 1.98
821 6311 2.187946 CTTCCACCAGGCGGCTAG 59.812 66.667 12.74 7.13 34.57 3.42
822 6312 4.096003 GCTTCCACCAGGCGGCTA 62.096 66.667 12.74 0.00 34.57 3.93
825 6315 2.747855 GAAGCTTCCACCAGGCGG 60.748 66.667 15.97 0.00 38.77 6.13
826 6316 3.121030 CGAAGCTTCCACCAGGCG 61.121 66.667 20.62 3.15 33.74 5.52
827 6317 1.301677 CTTCGAAGCTTCCACCAGGC 61.302 60.000 20.62 0.00 33.74 4.85
843 6333 2.162681 CAAACTGGGATGTGGACCTTC 58.837 52.381 0.00 0.00 0.00 3.46
853 6343 5.420104 GGACTCATTCAATTCAAACTGGGAT 59.580 40.000 0.00 0.00 0.00 3.85
1022 6712 4.220821 GGAGAAGCCCGAGTGATAATATGA 59.779 45.833 0.00 0.00 0.00 2.15
1056 6749 1.577736 AGGAGGATGACCAAGGAGTG 58.422 55.000 0.00 0.00 38.94 3.51
2808 8577 0.250252 TGTGATCACCTTCGCAGCAA 60.250 50.000 22.85 0.00 32.59 3.91
2871 8640 6.732154 TGCATTGCTCTTCTTAAATAGATGC 58.268 36.000 10.49 0.00 32.26 3.91
2904 8676 3.955471 TCTGATGTTCCAATTCAGGACC 58.045 45.455 0.00 0.00 37.42 4.46
3032 8804 7.029563 GTCTGCGATTTTAGGAACAAATGATT 58.970 34.615 0.00 0.00 0.00 2.57
3076 8848 1.843851 TCGGCTAAAATCCCTGTCCAT 59.156 47.619 0.00 0.00 0.00 3.41
3080 8852 4.163458 TCATAACTCGGCTAAAATCCCTGT 59.837 41.667 0.00 0.00 0.00 4.00
3081 8853 4.511826 GTCATAACTCGGCTAAAATCCCTG 59.488 45.833 0.00 0.00 0.00 4.45
3148 8920 1.210155 GTGTGATTGCAACTCCGGC 59.790 57.895 0.00 0.00 0.00 6.13
3189 8961 3.010027 TGATTTCCAGAAGTACCATGCCA 59.990 43.478 0.00 0.00 0.00 4.92
3235 9007 9.765795 GCTTCTAGTGTTGTATGGTATTTCTAT 57.234 33.333 0.00 0.00 0.00 1.98
3267 9039 3.008594 CCACAACATTCTGGTACCTGGTA 59.991 47.826 17.82 1.49 0.00 3.25
3288 9060 1.745653 GCTTGCACAGGGAAATACTCC 59.254 52.381 0.00 0.00 44.54 3.85
3361 9133 5.105997 CCTCTTCCAAATTGAAGTCACCATC 60.106 44.000 0.00 0.00 41.96 3.51
3466 9238 2.510382 TCTCCTGTAGACCCTCGAGAAT 59.490 50.000 15.71 0.05 0.00 2.40
3534 9306 3.377172 ACACTGAAGTTACAGCACCAAAC 59.623 43.478 0.00 0.00 41.06 2.93
3575 9347 2.203800 TCGATCGTATGTGAAGCACC 57.796 50.000 15.94 0.00 32.73 5.01
3602 9376 6.069684 AGAGAAGTTGCTGAAACAAAGATG 57.930 37.500 0.56 0.00 41.61 2.90
3621 9410 9.231297 CCACTCCAGATTACAATTTTAAAGAGA 57.769 33.333 9.31 0.00 0.00 3.10
3622 9411 9.231297 TCCACTCCAGATTACAATTTTAAAGAG 57.769 33.333 0.00 0.00 0.00 2.85
3623 9412 9.581289 TTCCACTCCAGATTACAATTTTAAAGA 57.419 29.630 0.00 0.00 0.00 2.52
3624 9413 9.846248 CTTCCACTCCAGATTACAATTTTAAAG 57.154 33.333 0.00 0.00 0.00 1.85
3682 9472 9.758651 ACAAAAACCTAAATAACAGATGGTTTC 57.241 29.630 8.15 0.00 44.04 2.78
3709 9502 2.631418 TAGTAGCACGCACTCAGAAC 57.369 50.000 0.00 0.00 0.00 3.01
3711 9504 1.883926 TGTTAGTAGCACGCACTCAGA 59.116 47.619 0.00 0.00 0.00 3.27
3712 9505 2.347697 TGTTAGTAGCACGCACTCAG 57.652 50.000 0.00 0.00 0.00 3.35
3714 9507 2.673833 AGTTGTTAGTAGCACGCACTC 58.326 47.619 0.00 0.00 0.00 3.51
3717 9510 3.243602 TGAGAAGTTGTTAGTAGCACGCA 60.244 43.478 0.00 0.00 0.00 5.24
3718 9511 3.314553 TGAGAAGTTGTTAGTAGCACGC 58.685 45.455 0.00 0.00 0.00 5.34
3719 9512 4.795268 TCTGAGAAGTTGTTAGTAGCACG 58.205 43.478 0.00 0.00 0.00 5.34
3720 9513 7.478520 TTTTCTGAGAAGTTGTTAGTAGCAC 57.521 36.000 0.00 0.00 0.00 4.40
3725 9518 5.116882 ACGCTTTTCTGAGAAGTTGTTAGT 58.883 37.500 9.37 0.00 0.00 2.24
3726 9519 5.610552 CGACGCTTTTCTGAGAAGTTGTTAG 60.611 44.000 9.37 4.58 0.00 2.34
3727 9520 4.208460 CGACGCTTTTCTGAGAAGTTGTTA 59.792 41.667 9.37 0.00 0.00 2.41
3728 9521 3.001330 CGACGCTTTTCTGAGAAGTTGTT 59.999 43.478 9.37 0.00 0.00 2.83
3730 9523 2.660362 GCGACGCTTTTCTGAGAAGTTG 60.660 50.000 13.73 5.57 0.00 3.16
3731 9524 1.527311 GCGACGCTTTTCTGAGAAGTT 59.473 47.619 13.73 0.00 0.00 2.66
3732 9525 1.140816 GCGACGCTTTTCTGAGAAGT 58.859 50.000 13.73 0.00 0.00 3.01
3733 9526 1.125748 CAGCGACGCTTTTCTGAGAAG 59.874 52.381 21.97 0.24 36.40 2.85
3735 9528 0.313987 TCAGCGACGCTTTTCTGAGA 59.686 50.000 21.97 9.77 36.40 3.27
3737 9530 0.032130 ACTCAGCGACGCTTTTCTGA 59.968 50.000 21.97 13.94 36.40 3.27
3738 9531 0.162507 CACTCAGCGACGCTTTTCTG 59.837 55.000 21.97 9.83 36.40 3.02
3739 9532 0.032130 TCACTCAGCGACGCTTTTCT 59.968 50.000 21.97 0.00 36.40 2.52
3740 9533 1.071605 ATCACTCAGCGACGCTTTTC 58.928 50.000 21.97 0.00 36.40 2.29
3742 9535 0.319900 ACATCACTCAGCGACGCTTT 60.320 50.000 21.97 4.39 36.40 3.51
3743 9536 1.010935 CACATCACTCAGCGACGCTT 61.011 55.000 21.97 2.44 36.40 4.68
3744 9537 1.445066 CACATCACTCAGCGACGCT 60.445 57.895 18.46 18.46 40.77 5.07
3750 9551 1.516161 TGCTCAACACATCACTCAGC 58.484 50.000 0.00 0.00 0.00 4.26
3758 9559 4.455533 ACAACGTCATAATGCTCAACACAT 59.544 37.500 0.00 0.00 0.00 3.21
3759 9560 3.812609 ACAACGTCATAATGCTCAACACA 59.187 39.130 0.00 0.00 0.00 3.72
3761 9562 4.513318 TCAACAACGTCATAATGCTCAACA 59.487 37.500 0.00 0.00 0.00 3.33
3767 9568 6.926280 TGAAAATCAACAACGTCATAATGC 57.074 33.333 0.00 0.00 0.00 3.56
3774 9577 6.578919 GGAGAAGAATGAAAATCAACAACGTC 59.421 38.462 0.00 0.00 0.00 4.34
3776 9579 5.858581 GGGAGAAGAATGAAAATCAACAACG 59.141 40.000 0.00 0.00 0.00 4.10
3778 9581 6.323482 TGTGGGAGAAGAATGAAAATCAACAA 59.677 34.615 0.00 0.00 0.00 2.83
3784 9587 7.147497 ACCTTTTTGTGGGAGAAGAATGAAAAT 60.147 33.333 0.00 0.00 0.00 1.82
3790 9593 5.917462 CAAACCTTTTTGTGGGAGAAGAAT 58.083 37.500 0.00 0.00 37.85 2.40
3816 9619 4.893424 AAACGAGAGCAGCAAGTAAAAA 57.107 36.364 0.00 0.00 0.00 1.94
3817 9620 4.893424 AAAACGAGAGCAGCAAGTAAAA 57.107 36.364 0.00 0.00 0.00 1.52
3842 9645 9.166173 CACTATTGTCAGAACAGGAAATATGAA 57.834 33.333 0.00 0.00 36.57 2.57
3843 9646 7.770433 CCACTATTGTCAGAACAGGAAATATGA 59.230 37.037 0.00 0.00 36.57 2.15
3853 9656 2.426522 GCTGCCACTATTGTCAGAACA 58.573 47.619 0.00 0.00 0.00 3.18
3860 9663 1.352352 AGAACAGGCTGCCACTATTGT 59.648 47.619 22.65 13.08 0.00 2.71
3862 9665 3.434167 CCATAGAACAGGCTGCCACTATT 60.434 47.826 22.65 8.90 0.00 1.73
3867 9670 1.207488 ACCCATAGAACAGGCTGCCA 61.207 55.000 22.65 0.00 0.00 4.92
3868 9671 0.749454 CACCCATAGAACAGGCTGCC 60.749 60.000 15.89 11.65 0.00 4.85
3870 9673 0.254178 AGCACCCATAGAACAGGCTG 59.746 55.000 14.16 14.16 0.00 4.85
3871 9674 0.543749 GAGCACCCATAGAACAGGCT 59.456 55.000 0.00 0.00 0.00 4.58
3872 9675 0.543749 AGAGCACCCATAGAACAGGC 59.456 55.000 0.00 0.00 0.00 4.85
3873 9676 1.745141 GCAGAGCACCCATAGAACAGG 60.745 57.143 0.00 0.00 0.00 4.00
3975 9787 0.931468 TCCCCGATCCCTTCTCTGTA 59.069 55.000 0.00 0.00 0.00 2.74
4013 9825 1.442769 GAGCGTGAAGAGCATTTGGA 58.557 50.000 0.00 0.00 37.01 3.53
4059 9871 6.688813 GCCATGTTAAAAATCGTCTGAGATTC 59.311 38.462 0.00 0.00 39.69 2.52
4069 9881 2.094575 TCCGACGCCATGTTAAAAATCG 59.905 45.455 0.00 0.00 0.00 3.34
4076 9888 1.153647 CTGCTCCGACGCCATGTTA 60.154 57.895 0.00 0.00 0.00 2.41
4203 10031 2.813908 CTCCGTGCCGTACCTTGC 60.814 66.667 0.00 0.00 0.00 4.01
4260 10089 3.820595 CGAGAGCACAGATTCACCA 57.179 52.632 0.00 0.00 0.00 4.17
4275 10104 1.072666 GCCAGCAATTTTTCCGCGAG 61.073 55.000 8.23 0.00 0.00 5.03
4359 10228 0.036164 TCAACGGCAGCCACAAGTAT 59.964 50.000 13.30 0.00 0.00 2.12
4378 10247 1.001378 GCTGCACAAATCACGGTTCTT 60.001 47.619 0.00 0.00 0.00 2.52
4391 10260 1.689243 ATGAGCTATCCGGCTGCACA 61.689 55.000 13.17 13.17 43.20 4.57
4469 10338 4.962155 AGCCAAGTAGATATAACTGTGCC 58.038 43.478 0.00 0.00 0.00 5.01
4508 10399 2.742589 CAGACAGTACGAGCTGAGTACA 59.257 50.000 23.18 0.00 44.92 2.90
4509 10400 2.743126 ACAGACAGTACGAGCTGAGTAC 59.257 50.000 16.99 16.99 43.37 2.73
4510 10401 2.742589 CACAGACAGTACGAGCTGAGTA 59.257 50.000 15.46 0.00 39.62 2.59
4511 10402 1.537638 CACAGACAGTACGAGCTGAGT 59.462 52.381 15.46 0.00 39.62 3.41
4512 10403 1.537638 ACACAGACAGTACGAGCTGAG 59.462 52.381 15.46 11.35 39.62 3.35
4513 10404 1.266989 CACACAGACAGTACGAGCTGA 59.733 52.381 15.46 0.00 39.62 4.26
4514 10405 1.001268 ACACACAGACAGTACGAGCTG 60.001 52.381 0.00 8.87 41.92 4.24
4515 10406 1.319541 ACACACAGACAGTACGAGCT 58.680 50.000 0.00 0.00 0.00 4.09
4516 10407 1.787155 CAACACACAGACAGTACGAGC 59.213 52.381 0.00 0.00 0.00 5.03
4517 10408 3.079960 ACAACACACAGACAGTACGAG 57.920 47.619 0.00 0.00 0.00 4.18
4518 10409 3.183754 CAACAACACACAGACAGTACGA 58.816 45.455 0.00 0.00 0.00 3.43
4519 10410 2.927477 ACAACAACACACAGACAGTACG 59.073 45.455 0.00 0.00 0.00 3.67
4526 10417 4.081365 TCTCCACTAACAACAACACACAGA 60.081 41.667 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.