Multiple sequence alignment - TraesCS1A01G015000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G015000 chr1A 100.000 4511 0 0 1 4511 8160856 8156346 0.000000e+00 8331.0
1 TraesCS1A01G015000 chr1A 80.721 3050 463 67 561 3537 8144950 8141953 0.000000e+00 2259.0
2 TraesCS1A01G015000 chr1A 82.278 2669 379 46 912 3526 8331865 8334493 0.000000e+00 2222.0
3 TraesCS1A01G015000 chr1A 88.991 654 68 4 990 1643 8337981 8338630 0.000000e+00 806.0
4 TraesCS1A01G015000 chr1A 87.021 678 47 17 643 1288 8089150 8088482 0.000000e+00 726.0
5 TraesCS1A01G015000 chr1A 85.577 208 21 6 3527 3729 7831015 7831218 4.570000e-50 209.0
6 TraesCS1A01G015000 chr1A 97.059 34 1 0 4367 4400 556845305 556845338 1.750000e-04 58.4
7 TraesCS1A01G015000 chr1A 100.000 30 0 0 456 485 580503161 580503190 6.300000e-04 56.5
8 TraesCS1A01G015000 chr1A 100.000 30 0 0 456 485 580518697 580518726 6.300000e-04 56.5
9 TraesCS1A01G015000 chr1D 93.355 4018 201 19 480 4452 6722116 6718120 0.000000e+00 5880.0
10 TraesCS1A01G015000 chr1D 82.206 2647 408 34 928 3537 6714681 6712061 0.000000e+00 2220.0
11 TraesCS1A01G015000 chr1D 89.812 638 33 12 480 1087 6692392 6691757 0.000000e+00 789.0
12 TraesCS1A01G015000 chr1D 91.489 47 3 1 527 573 6692435 6692390 3.770000e-06 63.9
13 TraesCS1A01G015000 chr1B 92.924 3929 216 31 480 4362 9161243 9165155 0.000000e+00 5659.0
14 TraesCS1A01G015000 chr1B 92.367 4035 212 30 480 4454 8867757 8863759 0.000000e+00 5657.0
15 TraesCS1A01G015000 chr1B 83.209 2680 346 49 928 3552 548199968 548197338 0.000000e+00 2361.0
16 TraesCS1A01G015000 chr1B 81.399 2688 383 61 1000 3634 548193684 548191061 0.000000e+00 2085.0
17 TraesCS1A01G015000 chr1B 81.363 499 79 9 1013 1500 8855868 8855373 1.180000e-105 394.0
18 TraesCS1A01G015000 chr1B 78.936 451 56 17 486 909 548200620 548200182 2.070000e-68 270.0
19 TraesCS1A01G015000 chr1B 77.726 431 67 20 563 977 9280744 9281161 2.100000e-58 237.0
20 TraesCS1A01G015000 chr4B 85.240 3103 387 32 480 3537 36636387 36633311 0.000000e+00 3127.0
21 TraesCS1A01G015000 chr5B 83.036 2747 364 45 857 3552 549547829 549550524 0.000000e+00 2398.0
22 TraesCS1A01G015000 chr5B 80.795 2692 404 60 1000 3634 13776132 13773497 0.000000e+00 2002.0
23 TraesCS1A01G015000 chr5B 77.313 454 63 21 550 983 549547365 549547798 9.760000e-57 231.0
24 TraesCS1A01G015000 chr2B 81.664 2765 406 55 938 3648 548623928 548626645 0.000000e+00 2204.0
25 TraesCS1A01G015000 chr2B 77.014 509 85 19 3873 4361 548627188 548627684 3.460000e-66 263.0
26 TraesCS1A01G015000 chr2B 97.059 34 1 0 4367 4400 272427493 272427526 1.750000e-04 58.4
27 TraesCS1A01G015000 chr2B 97.059 34 1 0 4367 4400 685794876 685794843 1.750000e-04 58.4
28 TraesCS1A01G015000 chr2A 82.006 2662 385 52 937 3539 611302766 611305392 0.000000e+00 2176.0
29 TraesCS1A01G015000 chr2A 81.034 1566 228 30 937 2464 611296095 611297629 0.000000e+00 1182.0
30 TraesCS1A01G015000 chr2A 93.946 479 25 3 9 486 438731570 438732045 0.000000e+00 721.0
31 TraesCS1A01G015000 chr2D 81.076 2769 421 59 938 3648 469990525 469993248 0.000000e+00 2115.0
32 TraesCS1A01G015000 chr2D 79.193 471 63 20 3914 4361 469993690 469994148 1.230000e-75 294.0
33 TraesCS1A01G015000 chr2D 92.537 67 4 1 3743 3809 469993474 469993539 1.340000e-15 95.3
34 TraesCS1A01G015000 chr5A 81.111 2700 392 69 990 3628 12194228 12191586 0.000000e+00 2052.0
35 TraesCS1A01G015000 chr5D 77.964 2505 435 71 1079 3536 493341829 493344263 0.000000e+00 1459.0
36 TraesCS1A01G015000 chr4D 87.600 250 28 3 241 487 299136380 299136131 2.050000e-73 287.0
37 TraesCS1A01G015000 chr4D 87.347 245 27 3 241 481 220797090 220796846 1.240000e-70 278.0
38 TraesCS1A01G015000 chr3D 90.909 44 4 0 4362 4405 593638594 593638637 4.870000e-05 60.2
39 TraesCS1A01G015000 chr7D 97.059 34 1 0 4367 4400 416246598 416246565 1.750000e-04 58.4
40 TraesCS1A01G015000 chr7D 100.000 29 0 0 552 580 634664423 634664395 2.000000e-03 54.7
41 TraesCS1A01G015000 chr6A 97.059 34 1 0 4367 4400 178420145 178420112 1.750000e-04 58.4
42 TraesCS1A01G015000 chr6A 97.059 34 1 0 4367 4400 572104730 572104763 1.750000e-04 58.4


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G015000 chr1A 8156346 8160856 4510 True 8331.000000 8331 100.000000 1 4511 1 chr1A.!!$R3 4510
1 TraesCS1A01G015000 chr1A 8141953 8144950 2997 True 2259.000000 2259 80.721000 561 3537 1 chr1A.!!$R2 2976
2 TraesCS1A01G015000 chr1A 8331865 8338630 6765 False 1514.000000 2222 85.634500 912 3526 2 chr1A.!!$F5 2614
3 TraesCS1A01G015000 chr1A 8088482 8089150 668 True 726.000000 726 87.021000 643 1288 1 chr1A.!!$R1 645
4 TraesCS1A01G015000 chr1D 6712061 6722116 10055 True 4050.000000 5880 87.780500 480 4452 2 chr1D.!!$R2 3972
5 TraesCS1A01G015000 chr1D 6691757 6692435 678 True 426.450000 789 90.650500 480 1087 2 chr1D.!!$R1 607
6 TraesCS1A01G015000 chr1B 9161243 9165155 3912 False 5659.000000 5659 92.924000 480 4362 1 chr1B.!!$F1 3882
7 TraesCS1A01G015000 chr1B 8863759 8867757 3998 True 5657.000000 5657 92.367000 480 4454 1 chr1B.!!$R2 3974
8 TraesCS1A01G015000 chr1B 548191061 548200620 9559 True 1572.000000 2361 81.181333 486 3634 3 chr1B.!!$R3 3148
9 TraesCS1A01G015000 chr4B 36633311 36636387 3076 True 3127.000000 3127 85.240000 480 3537 1 chr4B.!!$R1 3057
10 TraesCS1A01G015000 chr5B 13773497 13776132 2635 True 2002.000000 2002 80.795000 1000 3634 1 chr5B.!!$R1 2634
11 TraesCS1A01G015000 chr5B 549547365 549550524 3159 False 1314.500000 2398 80.174500 550 3552 2 chr5B.!!$F1 3002
12 TraesCS1A01G015000 chr2B 548623928 548627684 3756 False 1233.500000 2204 79.339000 938 4361 2 chr2B.!!$F2 3423
13 TraesCS1A01G015000 chr2A 611302766 611305392 2626 False 2176.000000 2176 82.006000 937 3539 1 chr2A.!!$F3 2602
14 TraesCS1A01G015000 chr2A 611296095 611297629 1534 False 1182.000000 1182 81.034000 937 2464 1 chr2A.!!$F2 1527
15 TraesCS1A01G015000 chr2D 469990525 469994148 3623 False 834.766667 2115 84.268667 938 4361 3 chr2D.!!$F1 3423
16 TraesCS1A01G015000 chr5A 12191586 12194228 2642 True 2052.000000 2052 81.111000 990 3628 1 chr5A.!!$R1 2638
17 TraesCS1A01G015000 chr5D 493341829 493344263 2434 False 1459.000000 1459 77.964000 1079 3536 1 chr5D.!!$F1 2457

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
230 231 0.043940 AGAGAGGGCTGACCAATCCT 59.956 55.000 0.47 0.0 43.89 3.24 F
465 466 0.107456 TACGCGGGTAGTCTAGGAGG 59.893 60.000 12.47 0.0 0.00 4.30 F
468 469 0.756070 GCGGGTAGTCTAGGAGGCTT 60.756 60.000 0.00 0.0 29.80 4.35 F
1388 1954 1.676006 CCTTGTTTGGTCCACTCACAC 59.324 52.381 0.00 0.0 0.00 3.82 F
2166 2759 0.606401 CAACGGACATGTTCCAGCCT 60.606 55.000 0.00 0.0 46.29 4.58 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1038 1508 0.828762 AGCAGCAAGATGTGGGCAAA 60.829 50.000 0.00 0.0 0.00 3.68 R
1848 2423 1.002087 GTGGAAGACGGTGGTTCATCT 59.998 52.381 0.00 0.0 0.00 2.90 R
1855 2430 1.535462 GACAAATGTGGAAGACGGTGG 59.465 52.381 0.00 0.0 0.00 4.61 R
3056 3667 0.179468 TCGGCTAAAATCCCTTCCCG 59.821 55.000 0.00 0.0 35.83 5.14 R
3956 6164 0.610232 GGCAATGGACTGCAGGTTCT 60.610 55.000 19.93 0.0 44.52 3.01 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
25 26 4.577246 CGGCAGCGACCTAGGCTC 62.577 72.222 9.30 4.99 39.08 4.70
26 27 4.228567 GGCAGCGACCTAGGCTCC 62.229 72.222 9.30 0.00 39.08 4.70
27 28 3.151022 GCAGCGACCTAGGCTCCT 61.151 66.667 9.30 0.00 39.08 3.69
28 29 3.124686 CAGCGACCTAGGCTCCTC 58.875 66.667 9.30 0.00 39.08 3.71
31 32 2.494530 GCGACCTAGGCTCCTCCTG 61.495 68.421 9.30 0.00 46.98 3.86
33 34 0.684805 CGACCTAGGCTCCTCCTGTT 60.685 60.000 9.30 0.00 46.98 3.16
34 35 0.827368 GACCTAGGCTCCTCCTGTTG 59.173 60.000 9.30 0.00 46.98 3.33
40 41 4.586618 CTCCTCCTGTTGAGCACG 57.413 61.111 0.00 0.00 39.98 5.34
41 42 1.079543 CTCCTCCTGTTGAGCACGG 60.080 63.158 0.00 0.00 39.98 4.94
43 44 1.079543 CCTCCTGTTGAGCACGGAG 60.080 63.158 7.47 7.47 39.98 4.63
44 45 1.079543 CTCCTGTTGAGCACGGAGG 60.080 63.158 6.82 0.00 38.11 4.30
45 46 2.743928 CCTGTTGAGCACGGAGGC 60.744 66.667 0.00 0.00 32.74 4.70
46 47 2.031012 CTGTTGAGCACGGAGGCA 59.969 61.111 0.00 0.00 32.74 4.75
47 48 2.031012 TGTTGAGCACGGAGGCAG 59.969 61.111 0.00 0.00 35.83 4.85
48 49 2.343758 GTTGAGCACGGAGGCAGA 59.656 61.111 0.00 0.00 35.83 4.26
49 50 1.739562 GTTGAGCACGGAGGCAGAG 60.740 63.158 0.00 0.00 35.83 3.35
50 51 2.947532 TTGAGCACGGAGGCAGAGG 61.948 63.158 0.00 0.00 35.83 3.69
51 52 4.154347 GAGCACGGAGGCAGAGGG 62.154 72.222 0.00 0.00 35.83 4.30
52 53 4.704103 AGCACGGAGGCAGAGGGA 62.704 66.667 0.00 0.00 35.83 4.20
53 54 4.154347 GCACGGAGGCAGAGGGAG 62.154 72.222 0.00 0.00 0.00 4.30
54 55 3.465403 CACGGAGGCAGAGGGAGG 61.465 72.222 0.00 0.00 0.00 4.30
55 56 4.787280 ACGGAGGCAGAGGGAGGG 62.787 72.222 0.00 0.00 0.00 4.30
57 58 4.095400 GGAGGCAGAGGGAGGGGA 62.095 72.222 0.00 0.00 0.00 4.81
58 59 2.766229 GAGGCAGAGGGAGGGGAC 60.766 72.222 0.00 0.00 0.00 4.46
59 60 4.787280 AGGCAGAGGGAGGGGACG 62.787 72.222 0.00 0.00 0.00 4.79
60 61 4.779733 GGCAGAGGGAGGGGACGA 62.780 72.222 0.00 0.00 0.00 4.20
61 62 3.151022 GCAGAGGGAGGGGACGAG 61.151 72.222 0.00 0.00 0.00 4.18
62 63 2.443016 CAGAGGGAGGGGACGAGG 60.443 72.222 0.00 0.00 0.00 4.63
63 64 2.617538 AGAGGGAGGGGACGAGGA 60.618 66.667 0.00 0.00 0.00 3.71
64 65 2.123640 GAGGGAGGGGACGAGGAG 60.124 72.222 0.00 0.00 0.00 3.69
65 66 2.617538 AGGGAGGGGACGAGGAGA 60.618 66.667 0.00 0.00 0.00 3.71
66 67 2.442458 GGGAGGGGACGAGGAGAC 60.442 72.222 0.00 0.00 0.00 3.36
67 68 2.359404 GGAGGGGACGAGGAGACA 59.641 66.667 0.00 0.00 0.00 3.41
68 69 2.053277 GGAGGGGACGAGGAGACAC 61.053 68.421 0.00 0.00 0.00 3.67
75 76 2.045242 CGAGGAGACACGGGAGGA 60.045 66.667 0.00 0.00 40.94 3.71
76 77 2.115911 CGAGGAGACACGGGAGGAG 61.116 68.421 0.00 0.00 40.94 3.69
77 78 2.363147 AGGAGACACGGGAGGAGC 60.363 66.667 0.00 0.00 0.00 4.70
78 79 2.680352 GGAGACACGGGAGGAGCA 60.680 66.667 0.00 0.00 0.00 4.26
79 80 2.716017 GGAGACACGGGAGGAGCAG 61.716 68.421 0.00 0.00 0.00 4.24
80 81 1.679305 GAGACACGGGAGGAGCAGA 60.679 63.158 0.00 0.00 0.00 4.26
81 82 1.662438 GAGACACGGGAGGAGCAGAG 61.662 65.000 0.00 0.00 0.00 3.35
82 83 2.681778 ACACGGGAGGAGCAGAGG 60.682 66.667 0.00 0.00 0.00 3.69
83 84 4.154347 CACGGGAGGAGCAGAGGC 62.154 72.222 0.00 0.00 41.61 4.70
84 85 4.704103 ACGGGAGGAGCAGAGGCA 62.704 66.667 0.00 0.00 44.61 4.75
85 86 3.847602 CGGGAGGAGCAGAGGCAG 61.848 72.222 0.00 0.00 44.61 4.85
86 87 3.478274 GGGAGGAGCAGAGGCAGG 61.478 72.222 0.00 0.00 44.61 4.85
87 88 3.478274 GGAGGAGCAGAGGCAGGG 61.478 72.222 0.00 0.00 44.61 4.45
88 89 3.478274 GAGGAGCAGAGGCAGGGG 61.478 72.222 0.00 0.00 44.61 4.79
89 90 3.991924 GAGGAGCAGAGGCAGGGGA 62.992 68.421 0.00 0.00 44.61 4.81
90 91 3.478274 GGAGCAGAGGCAGGGGAG 61.478 72.222 0.00 0.00 44.61 4.30
91 92 3.478274 GAGCAGAGGCAGGGGAGG 61.478 72.222 0.00 0.00 44.61 4.30
92 93 3.991924 GAGCAGAGGCAGGGGAGGA 62.992 68.421 0.00 0.00 44.61 3.71
93 94 3.478274 GCAGAGGCAGGGGAGGAG 61.478 72.222 0.00 0.00 40.72 3.69
94 95 2.767496 CAGAGGCAGGGGAGGAGG 60.767 72.222 0.00 0.00 0.00 4.30
95 96 2.955246 AGAGGCAGGGGAGGAGGA 60.955 66.667 0.00 0.00 0.00 3.71
96 97 2.445654 GAGGCAGGGGAGGAGGAG 60.446 72.222 0.00 0.00 0.00 3.69
97 98 4.101077 AGGCAGGGGAGGAGGAGG 62.101 72.222 0.00 0.00 0.00 4.30
104 105 4.779733 GGAGGAGGAGGCGGTGGA 62.780 72.222 0.00 0.00 0.00 4.02
105 106 3.151022 GAGGAGGAGGCGGTGGAG 61.151 72.222 0.00 0.00 0.00 3.86
106 107 4.787280 AGGAGGAGGCGGTGGAGG 62.787 72.222 0.00 0.00 0.00 4.30
116 117 4.459089 GGTGGAGGCAGCGGAGAC 62.459 72.222 0.00 0.00 0.00 3.36
172 173 4.214327 GCGGCCCGGAGAAGAGAG 62.214 72.222 4.77 0.00 0.00 3.20
173 174 2.756283 CGGCCCGGAGAAGAGAGT 60.756 66.667 0.73 0.00 0.00 3.24
174 175 1.453379 CGGCCCGGAGAAGAGAGTA 60.453 63.158 0.73 0.00 0.00 2.59
175 176 1.448922 CGGCCCGGAGAAGAGAGTAG 61.449 65.000 0.73 0.00 0.00 2.57
176 177 1.737201 GCCCGGAGAAGAGAGTAGC 59.263 63.158 0.73 0.00 0.00 3.58
177 178 2.026522 CCCGGAGAAGAGAGTAGCG 58.973 63.158 0.73 0.00 0.00 4.26
178 179 1.448922 CCCGGAGAAGAGAGTAGCGG 61.449 65.000 0.73 0.00 0.00 5.52
179 180 1.448922 CCGGAGAAGAGAGTAGCGGG 61.449 65.000 0.00 0.00 0.00 6.13
180 181 0.464013 CGGAGAAGAGAGTAGCGGGA 60.464 60.000 0.00 0.00 0.00 5.14
181 182 1.816183 CGGAGAAGAGAGTAGCGGGAT 60.816 57.143 0.00 0.00 0.00 3.85
182 183 1.611491 GGAGAAGAGAGTAGCGGGATG 59.389 57.143 0.00 0.00 0.00 3.51
183 184 2.577700 GAGAAGAGAGTAGCGGGATGA 58.422 52.381 0.00 0.00 0.00 2.92
184 185 2.552315 GAGAAGAGAGTAGCGGGATGAG 59.448 54.545 0.00 0.00 0.00 2.90
185 186 1.611491 GAAGAGAGTAGCGGGATGAGG 59.389 57.143 0.00 0.00 0.00 3.86
186 187 0.178975 AGAGAGTAGCGGGATGAGGG 60.179 60.000 0.00 0.00 0.00 4.30
187 188 0.178987 GAGAGTAGCGGGATGAGGGA 60.179 60.000 0.00 0.00 0.00 4.20
188 189 0.178975 AGAGTAGCGGGATGAGGGAG 60.179 60.000 0.00 0.00 0.00 4.30
189 190 0.178987 GAGTAGCGGGATGAGGGAGA 60.179 60.000 0.00 0.00 0.00 3.71
190 191 0.178975 AGTAGCGGGATGAGGGAGAG 60.179 60.000 0.00 0.00 0.00 3.20
191 192 1.153989 TAGCGGGATGAGGGAGAGG 59.846 63.158 0.00 0.00 0.00 3.69
192 193 2.373338 TAGCGGGATGAGGGAGAGGG 62.373 65.000 0.00 0.00 0.00 4.30
193 194 2.609339 CGGGATGAGGGAGAGGGA 59.391 66.667 0.00 0.00 0.00 4.20
194 195 1.532794 CGGGATGAGGGAGAGGGAG 60.533 68.421 0.00 0.00 0.00 4.30
195 196 1.152139 GGGATGAGGGAGAGGGAGG 60.152 68.421 0.00 0.00 0.00 4.30
196 197 1.669927 GGGATGAGGGAGAGGGAGGA 61.670 65.000 0.00 0.00 0.00 3.71
197 198 0.178935 GGATGAGGGAGAGGGAGGAG 60.179 65.000 0.00 0.00 0.00 3.69
198 199 0.856982 GATGAGGGAGAGGGAGGAGA 59.143 60.000 0.00 0.00 0.00 3.71
199 200 1.432807 GATGAGGGAGAGGGAGGAGAT 59.567 57.143 0.00 0.00 0.00 2.75
200 201 2.230612 TGAGGGAGAGGGAGGAGATA 57.769 55.000 0.00 0.00 0.00 1.98
201 202 2.736910 TGAGGGAGAGGGAGGAGATAT 58.263 52.381 0.00 0.00 0.00 1.63
202 203 3.075181 TGAGGGAGAGGGAGGAGATATT 58.925 50.000 0.00 0.00 0.00 1.28
203 204 3.472848 TGAGGGAGAGGGAGGAGATATTT 59.527 47.826 0.00 0.00 0.00 1.40
204 205 4.077745 TGAGGGAGAGGGAGGAGATATTTT 60.078 45.833 0.00 0.00 0.00 1.82
205 206 4.498493 AGGGAGAGGGAGGAGATATTTTC 58.502 47.826 0.00 0.00 0.00 2.29
206 207 4.077745 AGGGAGAGGGAGGAGATATTTTCA 60.078 45.833 0.00 0.00 0.00 2.69
207 208 4.041075 GGGAGAGGGAGGAGATATTTTCAC 59.959 50.000 0.00 0.00 0.00 3.18
208 209 4.262249 GGAGAGGGAGGAGATATTTTCACG 60.262 50.000 0.00 0.00 0.00 4.35
209 210 3.643792 AGAGGGAGGAGATATTTTCACGG 59.356 47.826 0.00 0.00 0.00 4.94
210 211 2.706190 AGGGAGGAGATATTTTCACGGG 59.294 50.000 0.00 0.00 0.00 5.28
211 212 2.704065 GGGAGGAGATATTTTCACGGGA 59.296 50.000 0.00 0.00 0.00 5.14
212 213 3.244249 GGGAGGAGATATTTTCACGGGAG 60.244 52.174 0.00 0.00 0.00 4.30
213 214 3.641906 GGAGGAGATATTTTCACGGGAGA 59.358 47.826 0.00 0.00 0.00 3.71
214 215 4.262249 GGAGGAGATATTTTCACGGGAGAG 60.262 50.000 0.00 0.00 0.00 3.20
215 216 4.547671 AGGAGATATTTTCACGGGAGAGA 58.452 43.478 0.00 0.00 0.00 3.10
216 217 4.586841 AGGAGATATTTTCACGGGAGAGAG 59.413 45.833 0.00 0.00 0.00 3.20
217 218 4.262249 GGAGATATTTTCACGGGAGAGAGG 60.262 50.000 0.00 0.00 0.00 3.69
218 219 3.643792 AGATATTTTCACGGGAGAGAGGG 59.356 47.826 0.00 0.00 0.00 4.30
219 220 0.253327 ATTTTCACGGGAGAGAGGGC 59.747 55.000 0.00 0.00 0.00 5.19
220 221 0.836400 TTTTCACGGGAGAGAGGGCT 60.836 55.000 0.00 0.00 0.00 5.19
221 222 1.544825 TTTCACGGGAGAGAGGGCTG 61.545 60.000 0.00 0.00 0.00 4.85
222 223 2.363018 CACGGGAGAGAGGGCTGA 60.363 66.667 0.00 0.00 0.00 4.26
223 224 2.363147 ACGGGAGAGAGGGCTGAC 60.363 66.667 0.00 0.00 0.00 3.51
224 225 3.151022 CGGGAGAGAGGGCTGACC 61.151 72.222 0.00 0.00 40.67 4.02
225 226 2.039624 GGGAGAGAGGGCTGACCA 59.960 66.667 0.47 0.00 43.89 4.02
226 227 1.613630 GGGAGAGAGGGCTGACCAA 60.614 63.158 0.47 0.00 43.89 3.67
227 228 0.985490 GGGAGAGAGGGCTGACCAAT 60.985 60.000 0.47 0.00 43.89 3.16
228 229 0.467804 GGAGAGAGGGCTGACCAATC 59.532 60.000 0.47 0.00 43.89 2.67
229 230 0.467804 GAGAGAGGGCTGACCAATCC 59.532 60.000 0.47 0.00 43.89 3.01
230 231 0.043940 AGAGAGGGCTGACCAATCCT 59.956 55.000 0.47 0.00 43.89 3.24
231 232 0.467804 GAGAGGGCTGACCAATCCTC 59.532 60.000 0.47 0.00 44.46 3.71
232 233 1.144936 GAGGGCTGACCAATCCTCG 59.855 63.158 0.47 0.00 43.89 4.63
233 234 2.514824 GGGCTGACCAATCCTCGC 60.515 66.667 0.00 0.00 39.85 5.03
234 235 2.892425 GGCTGACCAATCCTCGCG 60.892 66.667 0.00 0.00 35.26 5.87
235 236 3.567797 GCTGACCAATCCTCGCGC 61.568 66.667 0.00 0.00 0.00 6.86
236 237 3.257561 CTGACCAATCCTCGCGCG 61.258 66.667 26.76 26.76 0.00 6.86
237 238 4.812476 TGACCAATCCTCGCGCGG 62.812 66.667 31.69 20.19 0.00 6.46
238 239 4.814294 GACCAATCCTCGCGCGGT 62.814 66.667 31.69 18.02 0.00 5.68
240 241 4.812476 CCAATCCTCGCGCGGTGA 62.812 66.667 31.69 25.58 0.00 4.02
241 242 2.813474 CAATCCTCGCGCGGTGAA 60.813 61.111 31.69 13.70 0.00 3.18
242 243 2.813908 AATCCTCGCGCGGTGAAC 60.814 61.111 31.69 0.00 0.00 3.18
243 244 4.814294 ATCCTCGCGCGGTGAACC 62.814 66.667 31.69 0.00 0.00 3.62
245 246 4.124351 CCTCGCGCGGTGAACCTA 62.124 66.667 31.69 6.68 0.00 3.08
246 247 2.879462 CTCGCGCGGTGAACCTAC 60.879 66.667 31.69 0.00 0.00 3.18
247 248 3.620300 CTCGCGCGGTGAACCTACA 62.620 63.158 31.69 4.97 0.00 2.74
248 249 3.475774 CGCGCGGTGAACCTACAC 61.476 66.667 24.84 0.00 39.70 2.90
249 250 3.475774 GCGCGGTGAACCTACACG 61.476 66.667 8.83 0.00 41.12 4.49
250 251 2.807895 CGCGGTGAACCTACACGG 60.808 66.667 0.00 0.00 41.12 4.94
251 252 2.652530 GCGGTGAACCTACACGGA 59.347 61.111 0.00 0.00 41.41 4.69
252 253 1.445582 GCGGTGAACCTACACGGAG 60.446 63.158 0.00 0.00 41.41 4.63
266 267 1.836802 ACGGAGTGTCTAGAGAACCC 58.163 55.000 0.00 0.00 42.51 4.11
267 268 1.075050 ACGGAGTGTCTAGAGAACCCA 59.925 52.381 0.00 0.00 42.51 4.51
268 269 1.746220 CGGAGTGTCTAGAGAACCCAG 59.254 57.143 0.00 0.00 0.00 4.45
269 270 1.478916 GGAGTGTCTAGAGAACCCAGC 59.521 57.143 0.00 0.00 0.00 4.85
270 271 1.478916 GAGTGTCTAGAGAACCCAGCC 59.521 57.143 0.00 0.00 0.00 4.85
271 272 1.077993 AGTGTCTAGAGAACCCAGCCT 59.922 52.381 0.00 0.00 0.00 4.58
272 273 1.478916 GTGTCTAGAGAACCCAGCCTC 59.521 57.143 0.00 0.00 0.00 4.70
273 274 1.359474 TGTCTAGAGAACCCAGCCTCT 59.641 52.381 0.00 0.00 42.02 3.69
274 275 1.754226 GTCTAGAGAACCCAGCCTCTG 59.246 57.143 0.00 0.00 39.81 3.35
286 287 4.154347 CCTCTGGTCGCTGGCCTC 62.154 72.222 3.32 0.00 0.00 4.70
287 288 4.154347 CTCTGGTCGCTGGCCTCC 62.154 72.222 3.32 0.00 0.00 4.30
289 290 4.767255 CTGGTCGCTGGCCTCCAC 62.767 72.222 3.32 0.00 0.00 4.02
295 296 4.459089 GCTGGCCTCCACGGTCTC 62.459 72.222 3.32 0.00 38.58 3.36
296 297 2.997315 CTGGCCTCCACGGTCTCA 60.997 66.667 3.32 0.00 38.58 3.27
297 298 2.997315 TGGCCTCCACGGTCTCAG 60.997 66.667 3.32 0.00 38.58 3.35
298 299 2.680352 GGCCTCCACGGTCTCAGA 60.680 66.667 0.00 0.00 33.40 3.27
299 300 2.574399 GCCTCCACGGTCTCAGAC 59.426 66.667 0.00 0.00 34.25 3.51
307 308 3.393360 GGTCTCAGACCCCACCTG 58.607 66.667 13.63 0.00 46.19 4.00
308 309 1.536662 GGTCTCAGACCCCACCTGT 60.537 63.158 13.63 0.00 46.19 4.00
309 310 1.545706 GGTCTCAGACCCCACCTGTC 61.546 65.000 13.63 0.00 46.19 3.51
310 311 0.832135 GTCTCAGACCCCACCTGTCA 60.832 60.000 0.00 0.00 35.15 3.58
311 312 0.117140 TCTCAGACCCCACCTGTCAT 59.883 55.000 0.00 0.00 35.15 3.06
312 313 0.539051 CTCAGACCCCACCTGTCATC 59.461 60.000 0.00 0.00 35.15 2.92
313 314 0.909610 TCAGACCCCACCTGTCATCC 60.910 60.000 0.00 0.00 35.15 3.51
314 315 0.911525 CAGACCCCACCTGTCATCCT 60.912 60.000 0.00 0.00 35.15 3.24
315 316 0.618968 AGACCCCACCTGTCATCCTC 60.619 60.000 0.00 0.00 35.15 3.71
316 317 0.618968 GACCCCACCTGTCATCCTCT 60.619 60.000 0.00 0.00 32.91 3.69
317 318 0.911525 ACCCCACCTGTCATCCTCTG 60.912 60.000 0.00 0.00 0.00 3.35
318 319 1.222936 CCCACCTGTCATCCTCTGC 59.777 63.158 0.00 0.00 0.00 4.26
319 320 1.270414 CCCACCTGTCATCCTCTGCT 61.270 60.000 0.00 0.00 0.00 4.24
320 321 0.107800 CCACCTGTCATCCTCTGCTG 60.108 60.000 0.00 0.00 0.00 4.41
321 322 0.900421 CACCTGTCATCCTCTGCTGA 59.100 55.000 0.00 0.00 0.00 4.26
322 323 1.277273 CACCTGTCATCCTCTGCTGAA 59.723 52.381 0.00 0.00 0.00 3.02
323 324 1.554160 ACCTGTCATCCTCTGCTGAAG 59.446 52.381 0.00 0.00 0.00 3.02
324 325 1.654317 CTGTCATCCTCTGCTGAAGC 58.346 55.000 0.00 0.00 42.50 3.86
325 326 0.108472 TGTCATCCTCTGCTGAAGCG 60.108 55.000 0.00 0.00 45.83 4.68
327 328 2.178890 CATCCTCTGCTGAAGCGGC 61.179 63.158 6.24 0.00 46.62 6.53
328 329 3.397613 ATCCTCTGCTGAAGCGGCC 62.398 63.158 6.24 0.00 46.62 6.13
329 330 4.399395 CCTCTGCTGAAGCGGCCA 62.399 66.667 2.24 0.00 46.62 5.36
330 331 3.123620 CTCTGCTGAAGCGGCCAC 61.124 66.667 2.24 0.00 46.62 5.01
358 359 3.292159 AAAAACCGACGGCTGGGC 61.292 61.111 15.39 0.00 0.00 5.36
359 360 4.572571 AAAACCGACGGCTGGGCA 62.573 61.111 15.39 0.00 0.00 5.36
360 361 4.572571 AAACCGACGGCTGGGCAA 62.573 61.111 15.39 0.00 0.00 4.52
361 362 4.572571 AACCGACGGCTGGGCAAA 62.573 61.111 15.39 0.00 0.00 3.68
393 394 1.360192 AAAAAGCACTGTCGCTGCC 59.640 52.632 5.69 0.00 42.89 4.85
394 395 2.392613 AAAAAGCACTGTCGCTGCCG 62.393 55.000 5.69 0.00 42.89 5.69
399 400 3.680786 ACTGTCGCTGCCGCAGTA 61.681 61.111 21.29 7.78 44.15 2.74
400 401 2.432456 CTGTCGCTGCCGCAGTAA 60.432 61.111 21.29 7.43 35.42 2.24
401 402 1.811266 CTGTCGCTGCCGCAGTAAT 60.811 57.895 21.29 0.00 35.42 1.89
402 403 1.361668 CTGTCGCTGCCGCAGTAATT 61.362 55.000 21.29 0.00 35.42 1.40
403 404 1.348594 GTCGCTGCCGCAGTAATTC 59.651 57.895 21.29 3.70 35.30 2.17
404 405 1.079474 TCGCTGCCGCAGTAATTCA 60.079 52.632 21.29 0.00 35.30 2.57
405 406 0.672091 TCGCTGCCGCAGTAATTCAA 60.672 50.000 21.29 0.00 35.30 2.69
406 407 0.378257 CGCTGCCGCAGTAATTCAAT 59.622 50.000 21.29 0.00 35.30 2.57
407 408 1.202177 CGCTGCCGCAGTAATTCAATT 60.202 47.619 21.29 0.00 35.30 2.32
408 409 2.454055 GCTGCCGCAGTAATTCAATTC 58.546 47.619 21.29 0.00 33.43 2.17
409 410 2.708514 CTGCCGCAGTAATTCAATTCG 58.291 47.619 12.54 0.00 0.00 3.34
410 411 1.202132 TGCCGCAGTAATTCAATTCGC 60.202 47.619 0.00 0.00 0.00 4.70
411 412 1.730176 CCGCAGTAATTCAATTCGCG 58.270 50.000 0.00 0.00 40.83 5.87
412 413 1.730176 CGCAGTAATTCAATTCGCGG 58.270 50.000 6.13 0.00 37.72 6.46
413 414 1.062002 CGCAGTAATTCAATTCGCGGT 59.938 47.619 6.13 0.00 37.72 5.68
414 415 2.475519 CGCAGTAATTCAATTCGCGGTT 60.476 45.455 6.13 0.00 37.72 4.44
415 416 3.242155 CGCAGTAATTCAATTCGCGGTTA 60.242 43.478 6.13 0.00 37.72 2.85
416 417 4.654015 GCAGTAATTCAATTCGCGGTTAA 58.346 39.130 6.13 0.00 0.00 2.01
417 418 5.090083 GCAGTAATTCAATTCGCGGTTAAA 58.910 37.500 6.13 0.00 0.00 1.52
418 419 5.569823 GCAGTAATTCAATTCGCGGTTAAAA 59.430 36.000 6.13 0.00 0.00 1.52
419 420 6.088350 GCAGTAATTCAATTCGCGGTTAAAAA 59.912 34.615 6.13 0.00 0.00 1.94
420 421 7.433979 CAGTAATTCAATTCGCGGTTAAAAAC 58.566 34.615 6.13 0.00 0.00 2.43
421 422 5.489011 AATTCAATTCGCGGTTAAAAACG 57.511 34.783 6.13 0.00 0.00 3.60
422 423 3.605743 TCAATTCGCGGTTAAAAACGT 57.394 38.095 6.13 0.00 0.00 3.99
423 424 3.543670 TCAATTCGCGGTTAAAAACGTC 58.456 40.909 6.13 0.00 0.00 4.34
424 425 3.248125 TCAATTCGCGGTTAAAAACGTCT 59.752 39.130 6.13 0.00 0.00 4.18
425 426 3.883631 ATTCGCGGTTAAAAACGTCTT 57.116 38.095 6.13 0.00 0.00 3.01
426 427 2.649140 TCGCGGTTAAAAACGTCTTG 57.351 45.000 6.13 0.00 0.00 3.02
427 428 1.039487 CGCGGTTAAAAACGTCTTGC 58.961 50.000 0.00 0.00 0.00 4.01
429 430 1.039487 CGGTTAAAAACGTCTTGCGC 58.961 50.000 0.00 0.00 46.11 6.09
430 431 1.039487 GGTTAAAAACGTCTTGCGCG 58.961 50.000 0.00 0.00 46.11 6.86
431 432 0.424553 GTTAAAAACGTCTTGCGCGC 59.575 50.000 27.26 27.26 46.11 6.86
432 433 0.305313 TTAAAAACGTCTTGCGCGCT 59.695 45.000 33.29 7.72 46.11 5.92
433 434 0.111001 TAAAAACGTCTTGCGCGCTC 60.111 50.000 33.29 17.84 46.11 5.03
434 435 3.558282 AAAACGTCTTGCGCGCTCG 62.558 57.895 33.29 28.73 46.11 5.03
435 436 4.994201 AACGTCTTGCGCGCTCGA 62.994 61.111 33.29 24.14 46.11 4.04
436 437 4.778415 ACGTCTTGCGCGCTCGAT 62.778 61.111 33.29 16.88 46.11 3.59
437 438 4.257376 CGTCTTGCGCGCTCGATG 62.257 66.667 33.29 26.27 38.10 3.84
438 439 4.565704 GTCTTGCGCGCTCGATGC 62.566 66.667 33.29 13.43 38.10 3.91
444 445 3.624300 CGCGCTCGATGCCTTCAG 61.624 66.667 5.56 0.00 38.78 3.02
445 446 2.510238 GCGCTCGATGCCTTCAGT 60.510 61.111 0.00 0.00 38.78 3.41
446 447 2.103042 GCGCTCGATGCCTTCAGTT 61.103 57.895 0.00 0.00 38.78 3.16
447 448 0.806102 GCGCTCGATGCCTTCAGTTA 60.806 55.000 0.00 0.00 38.78 2.24
448 449 0.924090 CGCTCGATGCCTTCAGTTAC 59.076 55.000 0.00 0.00 38.78 2.50
449 450 0.924090 GCTCGATGCCTTCAGTTACG 59.076 55.000 0.00 0.00 35.15 3.18
450 451 0.924090 CTCGATGCCTTCAGTTACGC 59.076 55.000 0.00 0.00 0.00 4.42
451 452 0.800683 TCGATGCCTTCAGTTACGCG 60.801 55.000 3.53 3.53 0.00 6.01
452 453 1.752501 CGATGCCTTCAGTTACGCGG 61.753 60.000 12.47 0.00 0.00 6.46
453 454 1.429148 GATGCCTTCAGTTACGCGGG 61.429 60.000 12.47 0.00 0.00 6.13
454 455 2.047560 GCCTTCAGTTACGCGGGT 60.048 61.111 12.47 10.91 0.00 5.28
455 456 1.216178 GCCTTCAGTTACGCGGGTA 59.784 57.895 12.47 8.44 0.00 3.69
456 457 0.804933 GCCTTCAGTTACGCGGGTAG 60.805 60.000 12.47 1.73 0.00 3.18
457 458 0.529378 CCTTCAGTTACGCGGGTAGT 59.471 55.000 12.47 1.80 0.00 2.73
458 459 1.468736 CCTTCAGTTACGCGGGTAGTC 60.469 57.143 12.47 9.96 0.00 2.59
459 460 1.471684 CTTCAGTTACGCGGGTAGTCT 59.528 52.381 12.47 11.89 0.00 3.24
460 461 2.401583 TCAGTTACGCGGGTAGTCTA 57.598 50.000 12.47 0.00 0.00 2.59
461 462 2.283298 TCAGTTACGCGGGTAGTCTAG 58.717 52.381 12.47 9.81 0.00 2.43
462 463 1.332997 CAGTTACGCGGGTAGTCTAGG 59.667 57.143 12.47 2.26 0.00 3.02
463 464 1.210478 AGTTACGCGGGTAGTCTAGGA 59.790 52.381 12.47 0.00 0.00 2.94
464 465 1.601430 GTTACGCGGGTAGTCTAGGAG 59.399 57.143 12.47 0.00 0.00 3.69
465 466 0.107456 TACGCGGGTAGTCTAGGAGG 59.893 60.000 12.47 0.00 0.00 4.30
466 467 2.553727 CGCGGGTAGTCTAGGAGGC 61.554 68.421 0.00 0.00 0.00 4.70
467 468 1.152715 GCGGGTAGTCTAGGAGGCT 60.153 63.158 0.00 0.00 33.01 4.58
468 469 0.756070 GCGGGTAGTCTAGGAGGCTT 60.756 60.000 0.00 0.00 29.80 4.35
469 470 1.777941 CGGGTAGTCTAGGAGGCTTT 58.222 55.000 0.00 0.00 29.80 3.51
470 471 2.941480 CGGGTAGTCTAGGAGGCTTTA 58.059 52.381 0.00 0.00 29.80 1.85
471 472 3.498334 CGGGTAGTCTAGGAGGCTTTAT 58.502 50.000 0.00 0.00 29.80 1.40
472 473 4.660168 CGGGTAGTCTAGGAGGCTTTATA 58.340 47.826 0.00 0.00 29.80 0.98
473 474 5.262804 CGGGTAGTCTAGGAGGCTTTATAT 58.737 45.833 0.00 0.00 29.80 0.86
474 475 5.125739 CGGGTAGTCTAGGAGGCTTTATATG 59.874 48.000 0.00 0.00 29.80 1.78
475 476 6.017830 GGGTAGTCTAGGAGGCTTTATATGT 58.982 44.000 0.00 0.00 29.80 2.29
476 477 6.497606 GGGTAGTCTAGGAGGCTTTATATGTT 59.502 42.308 0.00 0.00 29.80 2.71
477 478 7.673082 GGGTAGTCTAGGAGGCTTTATATGTTA 59.327 40.741 0.00 0.00 29.80 2.41
478 479 8.741841 GGTAGTCTAGGAGGCTTTATATGTTAG 58.258 40.741 0.00 0.00 29.80 2.34
498 499 7.940850 TGTTAGATACGATGATCATTCAGTCA 58.059 34.615 10.14 2.07 34.73 3.41
532 542 3.309954 GGCTGACCTTTTGACTATTAGCG 59.690 47.826 0.00 0.00 0.00 4.26
604 622 6.152379 GGAAGACTCCAAAAATACAGCTTTG 58.848 40.000 0.00 0.00 41.96 2.77
829 893 8.940397 AAAATAGTGCCAGCCTTGTATTATAT 57.060 30.769 0.00 0.00 0.00 0.86
854 1080 5.012251 GGAGAGATAGGGTCCCAATCTAAAC 59.988 48.000 11.55 0.00 30.19 2.01
855 1081 5.538877 AGAGATAGGGTCCCAATCTAAACA 58.461 41.667 11.55 0.00 30.19 2.83
888 1114 5.975939 GCTGTCCTAATCTGAATTTGATTGC 59.024 40.000 14.15 7.18 35.90 3.56
954 1415 9.422681 GTTCCAGCCTATATATACATCCTCTTA 57.577 37.037 0.00 0.00 0.00 2.10
1038 1508 7.816411 ACATATTATTACTTGGGCTTCTCCTT 58.184 34.615 0.00 0.00 34.39 3.36
1072 1548 1.834856 CTGCTCCTCTTCAGCACCCA 61.835 60.000 0.00 0.00 42.09 4.51
1349 1903 6.612247 TCTTGTCATTGTCGTAAAACATGT 57.388 33.333 0.00 0.00 0.00 3.21
1388 1954 1.676006 CCTTGTTTGGTCCACTCACAC 59.324 52.381 0.00 0.00 0.00 3.82
1612 2187 6.205076 CCATATCATCTCAAAGAAGAGCCTTG 59.795 42.308 0.00 0.00 35.59 3.61
1680 2255 4.933064 GCCATCCTCGAGCGTCGG 62.933 72.222 6.99 5.49 40.88 4.79
1855 2430 2.683968 TGTACACTTCGCCAGATGAAC 58.316 47.619 0.00 0.00 0.00 3.18
2040 2621 1.389555 CATCCTGTGACTGCATGCAT 58.610 50.000 22.97 11.62 0.00 3.96
2166 2759 0.606401 CAACGGACATGTTCCAGCCT 60.606 55.000 0.00 0.00 46.29 4.58
2524 3129 2.862541 TCAAGTCATGTGGTTTCCTGG 58.137 47.619 0.00 0.00 0.00 4.45
2619 3224 8.169910 GCTACTAAAAACTTCTCGGAAAAGATC 58.830 37.037 0.00 0.00 0.00 2.75
2682 3287 4.641094 AGTGACGCAAAGACTACTATAGCT 59.359 41.667 0.00 0.00 0.00 3.32
2776 3381 9.391006 TGATCCAACATATCAACCTAGTAAAAC 57.609 33.333 0.00 0.00 30.52 2.43
2826 3431 6.530120 TCACAGGTTACTTGTGTATGAACAT 58.470 36.000 23.34 0.00 38.08 2.71
2880 3491 6.515272 TTTAAGAAGAGAAATGATGCCACC 57.485 37.500 0.00 0.00 0.00 4.61
3046 3657 2.435372 AGTTGCAGACTTTGGGTTGA 57.565 45.000 0.00 0.00 33.92 3.18
3056 3667 0.179124 TTTGGGTTGACAGCGTTTGC 60.179 50.000 0.00 0.00 43.24 3.68
3279 3899 1.334869 GCCGAATATTTCCCTGTGCAG 59.665 52.381 0.00 0.00 0.00 4.41
3559 4311 7.911362 ATAATTCGTAGAGTAGTTCGCTTTC 57.089 36.000 0.00 0.00 38.43 2.62
3566 4318 5.203060 AGAGTAGTTCGCTTTCTTTCAGT 57.797 39.130 0.00 0.00 0.00 3.41
3571 4323 7.797819 AGTAGTTCGCTTTCTTTCAGTATTTG 58.202 34.615 0.00 0.00 0.00 2.32
3589 4349 9.180678 CAGTATTTGTTGGAAAGTTGTAATGTC 57.819 33.333 0.00 0.00 0.00 3.06
3611 4371 4.223032 TCGAGCAGAAGGAATAAAGGAAGT 59.777 41.667 0.00 0.00 0.00 3.01
3715 4477 7.536622 GCTAGAAATTTTCTGTTGATGTGTCAG 59.463 37.037 19.60 7.19 40.94 3.51
3731 4493 5.063204 TGTGTCAGTTGTAAGCTGCTTATT 58.937 37.500 23.51 8.68 34.21 1.40
3732 4494 5.049474 TGTGTCAGTTGTAAGCTGCTTATTG 60.049 40.000 23.51 18.11 34.21 1.90
3733 4495 4.083324 TGTCAGTTGTAAGCTGCTTATTGC 60.083 41.667 23.51 15.79 43.25 3.56
3735 4497 2.420022 AGTTGTAAGCTGCTTATTGCCG 59.580 45.455 23.51 0.00 42.00 5.69
3775 4539 1.384525 TTTCACAACCACCAGGAACG 58.615 50.000 0.00 0.00 38.69 3.95
3814 4578 8.268850 TCTCAGACAACTTATAAAGGAAATGC 57.731 34.615 0.00 0.00 0.00 3.56
3818 4582 5.640732 ACAACTTATAAAGGAAATGCTGCG 58.359 37.500 0.00 0.00 0.00 5.18
3820 4584 3.694072 ACTTATAAAGGAAATGCTGCGCA 59.306 39.130 10.98 10.98 44.86 6.09
3824 4588 0.604578 AAGGAAATGCTGCGCAACAT 59.395 45.000 20.16 20.16 43.62 2.71
3825 4589 0.604578 AGGAAATGCTGCGCAACATT 59.395 45.000 28.47 28.47 43.62 2.71
3826 4590 0.994263 GGAAATGCTGCGCAACATTC 59.006 50.000 32.38 24.83 43.62 2.67
3827 4591 0.636733 GAAATGCTGCGCAACATTCG 59.363 50.000 32.38 13.13 43.62 3.34
3835 4599 3.280532 CGCAACATTCGCACTTCTC 57.719 52.632 0.00 0.00 0.00 2.87
3858 4622 7.453126 TCTCAGGTAAATGCCATTTCCTTTTTA 59.547 33.333 5.82 0.00 31.73 1.52
3907 6115 2.498167 TCTTCAAGCTTCAGGTCTTGC 58.502 47.619 0.00 0.00 39.47 4.01
3956 6164 2.429930 CAGAACCAAGTCGGCCCA 59.570 61.111 0.00 0.00 39.03 5.36
4031 6239 1.678627 CCGACAGTAGTCTGGGATCTG 59.321 57.143 0.00 0.00 45.14 2.90
4040 6248 1.135094 TCTGGGATCTGGCTCCATTC 58.865 55.000 0.00 0.00 37.01 2.67
4049 6257 2.042831 GGCTCCATTCGTTGCTGCT 61.043 57.895 0.00 0.00 0.00 4.24
4091 6299 2.372172 GGTTTCCCTGAACTCTCCTTCA 59.628 50.000 0.00 0.00 0.00 3.02
4110 6318 5.241506 CCTTCAAAGCTGTCCATCTTAAACA 59.758 40.000 0.00 0.00 0.00 2.83
4124 6332 6.307800 CCATCTTAAACAATTTGCCAACGTAG 59.692 38.462 0.00 0.00 0.00 3.51
4127 6335 4.640789 AAACAATTTGCCAACGTAGACA 57.359 36.364 0.00 0.00 0.00 3.41
4418 6629 2.680841 GCACCAACAAACAGAGTACACA 59.319 45.455 0.00 0.00 0.00 3.72
4438 6649 2.478894 CACCCGAACGATACAATATGGC 59.521 50.000 0.00 0.00 0.00 4.40
4440 6651 2.608506 CCCGAACGATACAATATGGCGA 60.609 50.000 0.00 0.00 0.00 5.54
4454 6665 0.543410 TGGCGAGGAGACCCACTTAA 60.543 55.000 0.00 0.00 33.88 1.85
4456 6667 1.002773 GGCGAGGAGACCCACTTAAAA 59.997 52.381 0.00 0.00 33.88 1.52
4457 6668 2.551504 GGCGAGGAGACCCACTTAAAAA 60.552 50.000 0.00 0.00 33.88 1.94
4459 6670 2.742589 CGAGGAGACCCACTTAAAAAGC 59.257 50.000 0.00 0.00 33.88 3.51
4460 6671 3.751518 GAGGAGACCCACTTAAAAAGCA 58.248 45.455 0.00 0.00 33.88 3.91
4462 6673 3.394606 AGGAGACCCACTTAAAAAGCAGA 59.605 43.478 0.00 0.00 33.88 4.26
4464 6675 4.396478 GGAGACCCACTTAAAAAGCAGATC 59.604 45.833 0.00 0.00 0.00 2.75
4466 6677 5.385198 AGACCCACTTAAAAAGCAGATCAA 58.615 37.500 0.00 0.00 0.00 2.57
4467 6678 5.833131 AGACCCACTTAAAAAGCAGATCAAA 59.167 36.000 0.00 0.00 0.00 2.69
4468 6679 6.323739 AGACCCACTTAAAAAGCAGATCAAAA 59.676 34.615 0.00 0.00 0.00 2.44
4469 6680 6.515832 ACCCACTTAAAAAGCAGATCAAAAG 58.484 36.000 0.00 0.00 0.00 2.27
4471 6682 7.286775 ACCCACTTAAAAAGCAGATCAAAAGTA 59.713 33.333 0.00 0.00 0.00 2.24
4473 6684 9.528018 CCACTTAAAAAGCAGATCAAAAGTAAA 57.472 29.630 0.00 0.00 0.00 2.01
4481 6692 8.579682 AAGCAGATCAAAAGTAAACATGAAAC 57.420 30.769 0.00 0.00 0.00 2.78
4482 6693 7.945134 AGCAGATCAAAAGTAAACATGAAACT 58.055 30.769 0.00 0.00 0.00 2.66
4483 6694 9.066892 AGCAGATCAAAAGTAAACATGAAACTA 57.933 29.630 0.00 0.00 0.00 2.24
4484 6695 9.334693 GCAGATCAAAAGTAAACATGAAACTAG 57.665 33.333 0.00 0.00 0.00 2.57
4498 7940 7.842525 CATGAAACTAGAACATGTCAAACAC 57.157 36.000 0.00 0.00 37.29 3.32
4499 7941 6.371809 TGAAACTAGAACATGTCAAACACC 57.628 37.500 0.00 0.00 0.00 4.16
4501 7943 7.276658 TGAAACTAGAACATGTCAAACACCTA 58.723 34.615 0.00 0.00 0.00 3.08
4503 7945 5.238583 ACTAGAACATGTCAAACACCTAGC 58.761 41.667 0.00 0.00 0.00 3.42
4504 7946 3.412386 AGAACATGTCAAACACCTAGCC 58.588 45.455 0.00 0.00 0.00 3.93
4505 7947 3.073062 AGAACATGTCAAACACCTAGCCT 59.927 43.478 0.00 0.00 0.00 4.58
4506 7948 4.286032 AGAACATGTCAAACACCTAGCCTA 59.714 41.667 0.00 0.00 0.00 3.93
4507 7949 4.207891 ACATGTCAAACACCTAGCCTAG 57.792 45.455 0.00 0.00 0.00 3.02
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
9 10 4.228567 GGAGCCTAGGTCGCTGCC 62.229 72.222 11.31 2.05 38.63 4.85
11 12 2.494530 GGAGGAGCCTAGGTCGCTG 61.495 68.421 11.31 0.00 36.48 5.18
12 13 2.123640 GGAGGAGCCTAGGTCGCT 60.124 66.667 11.31 0.40 39.95 4.93
23 24 1.079543 CCGTGCTCAACAGGAGGAG 60.080 63.158 0.00 0.00 45.37 3.69
25 26 1.079543 CTCCGTGCTCAACAGGAGG 60.080 63.158 2.61 0.00 44.22 4.30
26 27 1.079543 CCTCCGTGCTCAACAGGAG 60.080 63.158 3.53 3.53 46.93 3.69
27 28 3.059982 CCTCCGTGCTCAACAGGA 58.940 61.111 0.00 0.00 36.20 3.86
28 29 2.743928 GCCTCCGTGCTCAACAGG 60.744 66.667 0.00 0.00 0.00 4.00
31 32 1.739562 CTCTGCCTCCGTGCTCAAC 60.740 63.158 0.00 0.00 0.00 3.18
33 34 3.385384 CCTCTGCCTCCGTGCTCA 61.385 66.667 0.00 0.00 0.00 4.26
34 35 4.154347 CCCTCTGCCTCCGTGCTC 62.154 72.222 0.00 0.00 0.00 4.26
37 38 3.465403 CCTCCCTCTGCCTCCGTG 61.465 72.222 0.00 0.00 0.00 4.94
38 39 4.787280 CCCTCCCTCTGCCTCCGT 62.787 72.222 0.00 0.00 0.00 4.69
40 41 4.095400 TCCCCTCCCTCTGCCTCC 62.095 72.222 0.00 0.00 0.00 4.30
41 42 2.766229 GTCCCCTCCCTCTGCCTC 60.766 72.222 0.00 0.00 0.00 4.70
43 44 4.779733 TCGTCCCCTCCCTCTGCC 62.780 72.222 0.00 0.00 0.00 4.85
44 45 3.151022 CTCGTCCCCTCCCTCTGC 61.151 72.222 0.00 0.00 0.00 4.26
45 46 2.443016 CCTCGTCCCCTCCCTCTG 60.443 72.222 0.00 0.00 0.00 3.35
46 47 2.617538 TCCTCGTCCCCTCCCTCT 60.618 66.667 0.00 0.00 0.00 3.69
47 48 2.123640 CTCCTCGTCCCCTCCCTC 60.124 72.222 0.00 0.00 0.00 4.30
48 49 2.617538 TCTCCTCGTCCCCTCCCT 60.618 66.667 0.00 0.00 0.00 4.20
49 50 2.442458 GTCTCCTCGTCCCCTCCC 60.442 72.222 0.00 0.00 0.00 4.30
50 51 2.053277 GTGTCTCCTCGTCCCCTCC 61.053 68.421 0.00 0.00 0.00 4.30
51 52 2.408241 CGTGTCTCCTCGTCCCCTC 61.408 68.421 0.00 0.00 0.00 4.30
52 53 2.361357 CGTGTCTCCTCGTCCCCT 60.361 66.667 0.00 0.00 0.00 4.79
53 54 3.450115 CCGTGTCTCCTCGTCCCC 61.450 72.222 0.00 0.00 0.00 4.81
54 55 3.450115 CCCGTGTCTCCTCGTCCC 61.450 72.222 0.00 0.00 0.00 4.46
55 56 2.360852 TCCCGTGTCTCCTCGTCC 60.361 66.667 0.00 0.00 0.00 4.79
56 57 2.408241 CCTCCCGTGTCTCCTCGTC 61.408 68.421 0.00 0.00 0.00 4.20
57 58 2.361357 CCTCCCGTGTCTCCTCGT 60.361 66.667 0.00 0.00 0.00 4.18
58 59 2.045242 TCCTCCCGTGTCTCCTCG 60.045 66.667 0.00 0.00 0.00 4.63
59 60 2.419739 GCTCCTCCCGTGTCTCCTC 61.420 68.421 0.00 0.00 0.00 3.71
60 61 2.363147 GCTCCTCCCGTGTCTCCT 60.363 66.667 0.00 0.00 0.00 3.69
61 62 2.680352 TGCTCCTCCCGTGTCTCC 60.680 66.667 0.00 0.00 0.00 3.71
62 63 1.662438 CTCTGCTCCTCCCGTGTCTC 61.662 65.000 0.00 0.00 0.00 3.36
63 64 1.680651 CTCTGCTCCTCCCGTGTCT 60.681 63.158 0.00 0.00 0.00 3.41
64 65 2.716017 CCTCTGCTCCTCCCGTGTC 61.716 68.421 0.00 0.00 0.00 3.67
65 66 2.681778 CCTCTGCTCCTCCCGTGT 60.682 66.667 0.00 0.00 0.00 4.49
66 67 4.154347 GCCTCTGCTCCTCCCGTG 62.154 72.222 0.00 0.00 33.53 4.94
67 68 4.704103 TGCCTCTGCTCCTCCCGT 62.704 66.667 0.00 0.00 38.71 5.28
68 69 3.847602 CTGCCTCTGCTCCTCCCG 61.848 72.222 0.00 0.00 38.71 5.14
69 70 3.478274 CCTGCCTCTGCTCCTCCC 61.478 72.222 0.00 0.00 38.71 4.30
70 71 3.478274 CCCTGCCTCTGCTCCTCC 61.478 72.222 0.00 0.00 38.71 4.30
71 72 3.478274 CCCCTGCCTCTGCTCCTC 61.478 72.222 0.00 0.00 38.71 3.71
72 73 3.999705 CTCCCCTGCCTCTGCTCCT 63.000 68.421 0.00 0.00 38.71 3.69
73 74 3.478274 CTCCCCTGCCTCTGCTCC 61.478 72.222 0.00 0.00 38.71 4.70
74 75 3.478274 CCTCCCCTGCCTCTGCTC 61.478 72.222 0.00 0.00 38.71 4.26
75 76 3.999705 CTCCTCCCCTGCCTCTGCT 63.000 68.421 0.00 0.00 38.71 4.24
76 77 3.478274 CTCCTCCCCTGCCTCTGC 61.478 72.222 0.00 0.00 38.26 4.26
77 78 2.767496 CCTCCTCCCCTGCCTCTG 60.767 72.222 0.00 0.00 0.00 3.35
78 79 2.955246 TCCTCCTCCCCTGCCTCT 60.955 66.667 0.00 0.00 0.00 3.69
79 80 2.445654 CTCCTCCTCCCCTGCCTC 60.446 72.222 0.00 0.00 0.00 4.70
80 81 4.101077 CCTCCTCCTCCCCTGCCT 62.101 72.222 0.00 0.00 0.00 4.75
87 88 4.779733 TCCACCGCCTCCTCCTCC 62.780 72.222 0.00 0.00 0.00 4.30
88 89 3.151022 CTCCACCGCCTCCTCCTC 61.151 72.222 0.00 0.00 0.00 3.71
89 90 4.787280 CCTCCACCGCCTCCTCCT 62.787 72.222 0.00 0.00 0.00 3.69
99 100 4.459089 GTCTCCGCTGCCTCCACC 62.459 72.222 0.00 0.00 0.00 4.61
100 101 4.803426 CGTCTCCGCTGCCTCCAC 62.803 72.222 0.00 0.00 0.00 4.02
102 103 4.200283 CTCGTCTCCGCTGCCTCC 62.200 72.222 0.00 0.00 0.00 4.30
103 104 4.200283 CCTCGTCTCCGCTGCCTC 62.200 72.222 0.00 0.00 0.00 4.70
155 156 4.214327 CTCTCTTCTCCGGGCCGC 62.214 72.222 23.20 0.00 0.00 6.53
156 157 1.448922 CTACTCTCTTCTCCGGGCCG 61.449 65.000 21.46 21.46 0.00 6.13
157 158 1.740332 GCTACTCTCTTCTCCGGGCC 61.740 65.000 0.00 0.00 0.00 5.80
158 159 1.737201 GCTACTCTCTTCTCCGGGC 59.263 63.158 0.00 0.00 0.00 6.13
159 160 1.448922 CCGCTACTCTCTTCTCCGGG 61.449 65.000 0.00 0.00 0.00 5.73
160 161 1.448922 CCCGCTACTCTCTTCTCCGG 61.449 65.000 0.00 0.00 0.00 5.14
161 162 0.464013 TCCCGCTACTCTCTTCTCCG 60.464 60.000 0.00 0.00 0.00 4.63
162 163 1.611491 CATCCCGCTACTCTCTTCTCC 59.389 57.143 0.00 0.00 0.00 3.71
163 164 2.552315 CTCATCCCGCTACTCTCTTCTC 59.448 54.545 0.00 0.00 0.00 2.87
164 165 2.582052 CTCATCCCGCTACTCTCTTCT 58.418 52.381 0.00 0.00 0.00 2.85
165 166 1.611491 CCTCATCCCGCTACTCTCTTC 59.389 57.143 0.00 0.00 0.00 2.87
166 167 1.698506 CCTCATCCCGCTACTCTCTT 58.301 55.000 0.00 0.00 0.00 2.85
167 168 0.178975 CCCTCATCCCGCTACTCTCT 60.179 60.000 0.00 0.00 0.00 3.10
168 169 0.178987 TCCCTCATCCCGCTACTCTC 60.179 60.000 0.00 0.00 0.00 3.20
169 170 0.178975 CTCCCTCATCCCGCTACTCT 60.179 60.000 0.00 0.00 0.00 3.24
170 171 0.178987 TCTCCCTCATCCCGCTACTC 60.179 60.000 0.00 0.00 0.00 2.59
171 172 0.178975 CTCTCCCTCATCCCGCTACT 60.179 60.000 0.00 0.00 0.00 2.57
172 173 1.182385 CCTCTCCCTCATCCCGCTAC 61.182 65.000 0.00 0.00 0.00 3.58
173 174 1.153989 CCTCTCCCTCATCCCGCTA 59.846 63.158 0.00 0.00 0.00 4.26
174 175 2.123077 CCTCTCCCTCATCCCGCT 60.123 66.667 0.00 0.00 0.00 5.52
175 176 3.237741 CCCTCTCCCTCATCCCGC 61.238 72.222 0.00 0.00 0.00 6.13
176 177 1.532794 CTCCCTCTCCCTCATCCCG 60.533 68.421 0.00 0.00 0.00 5.14
177 178 1.152139 CCTCCCTCTCCCTCATCCC 60.152 68.421 0.00 0.00 0.00 3.85
178 179 0.178935 CTCCTCCCTCTCCCTCATCC 60.179 65.000 0.00 0.00 0.00 3.51
179 180 0.856982 TCTCCTCCCTCTCCCTCATC 59.143 60.000 0.00 0.00 0.00 2.92
180 181 1.556499 ATCTCCTCCCTCTCCCTCAT 58.444 55.000 0.00 0.00 0.00 2.90
181 182 2.230612 TATCTCCTCCCTCTCCCTCA 57.769 55.000 0.00 0.00 0.00 3.86
182 183 3.845109 AATATCTCCTCCCTCTCCCTC 57.155 52.381 0.00 0.00 0.00 4.30
183 184 4.077745 TGAAAATATCTCCTCCCTCTCCCT 60.078 45.833 0.00 0.00 0.00 4.20
184 185 4.041075 GTGAAAATATCTCCTCCCTCTCCC 59.959 50.000 0.00 0.00 0.00 4.30
185 186 4.262249 CGTGAAAATATCTCCTCCCTCTCC 60.262 50.000 0.00 0.00 0.00 3.71
186 187 4.262249 CCGTGAAAATATCTCCTCCCTCTC 60.262 50.000 0.00 0.00 0.00 3.20
187 188 3.643792 CCGTGAAAATATCTCCTCCCTCT 59.356 47.826 0.00 0.00 0.00 3.69
188 189 3.244249 CCCGTGAAAATATCTCCTCCCTC 60.244 52.174 0.00 0.00 0.00 4.30
189 190 2.706190 CCCGTGAAAATATCTCCTCCCT 59.294 50.000 0.00 0.00 0.00 4.20
190 191 2.704065 TCCCGTGAAAATATCTCCTCCC 59.296 50.000 0.00 0.00 0.00 4.30
191 192 3.641906 TCTCCCGTGAAAATATCTCCTCC 59.358 47.826 0.00 0.00 0.00 4.30
192 193 4.585162 TCTCTCCCGTGAAAATATCTCCTC 59.415 45.833 0.00 0.00 0.00 3.71
193 194 4.547671 TCTCTCCCGTGAAAATATCTCCT 58.452 43.478 0.00 0.00 0.00 3.69
194 195 4.262249 CCTCTCTCCCGTGAAAATATCTCC 60.262 50.000 0.00 0.00 0.00 3.71
195 196 4.262249 CCCTCTCTCCCGTGAAAATATCTC 60.262 50.000 0.00 0.00 0.00 2.75
196 197 3.643792 CCCTCTCTCCCGTGAAAATATCT 59.356 47.826 0.00 0.00 0.00 1.98
197 198 3.804063 GCCCTCTCTCCCGTGAAAATATC 60.804 52.174 0.00 0.00 0.00 1.63
198 199 2.104963 GCCCTCTCTCCCGTGAAAATAT 59.895 50.000 0.00 0.00 0.00 1.28
199 200 1.485066 GCCCTCTCTCCCGTGAAAATA 59.515 52.381 0.00 0.00 0.00 1.40
200 201 0.253327 GCCCTCTCTCCCGTGAAAAT 59.747 55.000 0.00 0.00 0.00 1.82
201 202 0.836400 AGCCCTCTCTCCCGTGAAAA 60.836 55.000 0.00 0.00 0.00 2.29
202 203 1.229209 AGCCCTCTCTCCCGTGAAA 60.229 57.895 0.00 0.00 0.00 2.69
203 204 1.984570 CAGCCCTCTCTCCCGTGAA 60.985 63.158 0.00 0.00 0.00 3.18
204 205 2.363018 CAGCCCTCTCTCCCGTGA 60.363 66.667 0.00 0.00 0.00 4.35
205 206 2.363018 TCAGCCCTCTCTCCCGTG 60.363 66.667 0.00 0.00 0.00 4.94
206 207 2.363147 GTCAGCCCTCTCTCCCGT 60.363 66.667 0.00 0.00 0.00 5.28
207 208 3.151022 GGTCAGCCCTCTCTCCCG 61.151 72.222 0.00 0.00 0.00 5.14
208 209 0.985490 ATTGGTCAGCCCTCTCTCCC 60.985 60.000 0.00 0.00 0.00 4.30
209 210 0.467804 GATTGGTCAGCCCTCTCTCC 59.532 60.000 0.00 0.00 0.00 3.71
210 211 0.467804 GGATTGGTCAGCCCTCTCTC 59.532 60.000 0.00 0.00 0.00 3.20
211 212 0.043940 AGGATTGGTCAGCCCTCTCT 59.956 55.000 0.00 0.00 0.00 3.10
212 213 0.467804 GAGGATTGGTCAGCCCTCTC 59.532 60.000 0.00 0.00 41.40 3.20
213 214 1.333636 CGAGGATTGGTCAGCCCTCT 61.334 60.000 14.28 0.00 42.20 3.69
214 215 1.144936 CGAGGATTGGTCAGCCCTC 59.855 63.158 0.00 0.00 41.25 4.30
215 216 3.036429 GCGAGGATTGGTCAGCCCT 62.036 63.158 0.00 0.00 0.00 5.19
216 217 2.514824 GCGAGGATTGGTCAGCCC 60.515 66.667 0.00 0.00 0.00 5.19
217 218 2.892425 CGCGAGGATTGGTCAGCC 60.892 66.667 0.00 0.00 0.00 4.85
218 219 3.567797 GCGCGAGGATTGGTCAGC 61.568 66.667 12.10 0.00 0.00 4.26
219 220 3.257561 CGCGCGAGGATTGGTCAG 61.258 66.667 28.94 0.00 0.00 3.51
220 221 4.812476 CCGCGCGAGGATTGGTCA 62.812 66.667 34.63 0.00 0.00 4.02
221 222 4.814294 ACCGCGCGAGGATTGGTC 62.814 66.667 35.95 0.00 34.73 4.02
223 224 4.812476 TCACCGCGCGAGGATTGG 62.812 66.667 35.95 19.94 34.73 3.16
224 225 2.813474 TTCACCGCGCGAGGATTG 60.813 61.111 35.95 23.39 34.73 2.67
225 226 2.813908 GTTCACCGCGCGAGGATT 60.814 61.111 35.95 11.56 34.73 3.01
226 227 4.814294 GGTTCACCGCGCGAGGAT 62.814 66.667 35.95 16.70 34.73 3.24
228 229 4.124351 TAGGTTCACCGCGCGAGG 62.124 66.667 34.63 28.09 42.08 4.63
229 230 2.879462 GTAGGTTCACCGCGCGAG 60.879 66.667 34.63 23.58 42.08 5.03
230 231 3.672447 TGTAGGTTCACCGCGCGA 61.672 61.111 34.63 8.94 42.08 5.87
231 232 3.475774 GTGTAGGTTCACCGCGCG 61.476 66.667 25.67 25.67 42.08 6.86
232 233 3.475774 CGTGTAGGTTCACCGCGC 61.476 66.667 0.00 0.00 42.08 6.86
233 234 2.807895 CCGTGTAGGTTCACCGCG 60.808 66.667 0.00 0.00 42.08 6.46
234 235 1.445582 CTCCGTGTAGGTTCACCGC 60.446 63.158 0.00 0.00 42.08 5.68
235 236 0.388134 CACTCCGTGTAGGTTCACCG 60.388 60.000 0.00 0.00 42.08 4.94
236 237 0.677842 ACACTCCGTGTAGGTTCACC 59.322 55.000 0.00 0.00 45.56 4.02
246 247 1.473278 GGGTTCTCTAGACACTCCGTG 59.527 57.143 0.00 0.00 39.75 4.94
247 248 1.075050 TGGGTTCTCTAGACACTCCGT 59.925 52.381 0.00 0.00 0.00 4.69
248 249 1.746220 CTGGGTTCTCTAGACACTCCG 59.254 57.143 0.00 0.00 0.00 4.63
249 250 1.478916 GCTGGGTTCTCTAGACACTCC 59.521 57.143 0.00 0.00 0.00 3.85
250 251 1.478916 GGCTGGGTTCTCTAGACACTC 59.521 57.143 0.00 0.00 0.00 3.51
251 252 1.077993 AGGCTGGGTTCTCTAGACACT 59.922 52.381 0.00 0.00 0.00 3.55
252 253 1.478916 GAGGCTGGGTTCTCTAGACAC 59.521 57.143 0.00 0.00 0.00 3.67
253 254 1.359474 AGAGGCTGGGTTCTCTAGACA 59.641 52.381 0.00 0.00 38.46 3.41
254 255 1.754226 CAGAGGCTGGGTTCTCTAGAC 59.246 57.143 0.00 0.00 38.19 2.59
255 256 2.151502 CAGAGGCTGGGTTCTCTAGA 57.848 55.000 0.00 0.00 38.19 2.43
269 270 4.154347 GAGGCCAGCGACCAGAGG 62.154 72.222 5.01 0.00 0.00 3.69
270 271 4.154347 GGAGGCCAGCGACCAGAG 62.154 72.222 5.01 0.00 0.00 3.35
272 273 4.767255 GTGGAGGCCAGCGACCAG 62.767 72.222 5.01 0.00 32.34 4.00
278 279 4.459089 GAGACCGTGGAGGCCAGC 62.459 72.222 5.01 0.00 46.52 4.85
279 280 2.997315 TGAGACCGTGGAGGCCAG 60.997 66.667 5.01 0.00 46.52 4.85
280 281 2.997315 CTGAGACCGTGGAGGCCA 60.997 66.667 5.01 0.00 46.52 5.36
281 282 2.680352 TCTGAGACCGTGGAGGCC 60.680 66.667 0.00 0.00 46.52 5.19
282 283 2.574399 GTCTGAGACCGTGGAGGC 59.426 66.667 0.00 0.00 46.52 4.70
283 284 3.289525 GGTCTGAGACCGTGGAGG 58.710 66.667 16.95 0.00 43.14 4.30
291 292 0.832135 TGACAGGTGGGGTCTGAGAC 60.832 60.000 3.47 3.47 36.26 3.36
292 293 0.117140 ATGACAGGTGGGGTCTGAGA 59.883 55.000 0.00 0.00 36.26 3.27
293 294 0.539051 GATGACAGGTGGGGTCTGAG 59.461 60.000 0.00 0.00 36.26 3.35
294 295 0.909610 GGATGACAGGTGGGGTCTGA 60.910 60.000 0.00 0.00 36.26 3.27
295 296 0.911525 AGGATGACAGGTGGGGTCTG 60.912 60.000 0.00 0.00 36.26 3.51
296 297 0.618968 GAGGATGACAGGTGGGGTCT 60.619 60.000 0.00 0.00 36.26 3.85
297 298 0.618968 AGAGGATGACAGGTGGGGTC 60.619 60.000 0.00 0.00 35.83 4.46
298 299 0.911525 CAGAGGATGACAGGTGGGGT 60.912 60.000 0.00 0.00 0.00 4.95
299 300 1.910722 CAGAGGATGACAGGTGGGG 59.089 63.158 0.00 0.00 0.00 4.96
300 301 1.222936 GCAGAGGATGACAGGTGGG 59.777 63.158 0.00 0.00 0.00 4.61
301 302 0.107800 CAGCAGAGGATGACAGGTGG 60.108 60.000 0.00 0.00 30.05 4.61
302 303 0.900421 TCAGCAGAGGATGACAGGTG 59.100 55.000 0.00 0.00 33.81 4.00
303 304 1.554160 CTTCAGCAGAGGATGACAGGT 59.446 52.381 0.00 0.00 39.55 4.00
304 305 1.743091 GCTTCAGCAGAGGATGACAGG 60.743 57.143 0.00 0.00 39.55 4.00
305 306 1.654317 GCTTCAGCAGAGGATGACAG 58.346 55.000 0.00 0.00 39.55 3.51
306 307 0.108472 CGCTTCAGCAGAGGATGACA 60.108 55.000 0.00 0.00 39.55 3.58
307 308 0.809241 CCGCTTCAGCAGAGGATGAC 60.809 60.000 0.00 0.00 45.37 3.06
308 309 1.519246 CCGCTTCAGCAGAGGATGA 59.481 57.895 0.00 0.00 45.37 2.92
309 310 2.178890 GCCGCTTCAGCAGAGGATG 61.179 63.158 0.00 0.00 45.37 3.51
310 311 2.188994 GCCGCTTCAGCAGAGGAT 59.811 61.111 0.00 0.00 45.37 3.24
311 312 4.087892 GGCCGCTTCAGCAGAGGA 62.088 66.667 0.00 0.00 45.37 3.71
312 313 4.399395 TGGCCGCTTCAGCAGAGG 62.399 66.667 0.00 0.00 45.31 3.69
313 314 3.123620 GTGGCCGCTTCAGCAGAG 61.124 66.667 9.68 0.00 42.21 3.35
324 325 2.535788 TTTTTCACGTCCGTGGCCG 61.536 57.895 18.64 0.00 45.43 6.13
325 326 3.423179 TTTTTCACGTCCGTGGCC 58.577 55.556 18.64 0.00 45.43 5.36
341 342 3.292159 GCCCAGCCGTCGGTTTTT 61.292 61.111 13.94 0.00 0.00 1.94
342 343 4.572571 TGCCCAGCCGTCGGTTTT 62.573 61.111 13.94 0.00 0.00 2.43
343 344 4.572571 TTGCCCAGCCGTCGGTTT 62.573 61.111 13.94 0.00 0.00 3.27
344 345 4.572571 TTTGCCCAGCCGTCGGTT 62.573 61.111 13.94 3.31 0.00 4.44
375 376 1.360192 GGCAGCGACAGTGCTTTTT 59.640 52.632 0.00 0.00 44.46 1.94
376 377 2.896801 CGGCAGCGACAGTGCTTTT 61.897 57.895 0.00 0.00 44.46 2.27
377 378 3.349006 CGGCAGCGACAGTGCTTT 61.349 61.111 0.00 0.00 44.46 3.51
388 389 2.454055 GAATTGAATTACTGCGGCAGC 58.546 47.619 28.80 13.20 45.41 5.25
389 390 2.708514 CGAATTGAATTACTGCGGCAG 58.291 47.619 27.43 27.43 37.52 4.85
390 391 1.202132 GCGAATTGAATTACTGCGGCA 60.202 47.619 1.29 1.29 0.00 5.69
391 392 1.466855 GCGAATTGAATTACTGCGGC 58.533 50.000 0.00 0.00 0.00 6.53
392 393 1.730176 CGCGAATTGAATTACTGCGG 58.270 50.000 18.08 0.00 40.36 5.69
393 394 1.062002 ACCGCGAATTGAATTACTGCG 59.938 47.619 8.23 18.60 43.34 5.18
394 395 2.825086 ACCGCGAATTGAATTACTGC 57.175 45.000 8.23 0.00 0.00 4.40
395 396 7.433979 GTTTTTAACCGCGAATTGAATTACTG 58.566 34.615 8.23 0.00 0.00 2.74
396 397 6.303733 CGTTTTTAACCGCGAATTGAATTACT 59.696 34.615 8.23 0.00 0.00 2.24
397 398 6.086634 ACGTTTTTAACCGCGAATTGAATTAC 59.913 34.615 8.23 5.68 0.00 1.89
398 399 6.141462 ACGTTTTTAACCGCGAATTGAATTA 58.859 32.000 8.23 0.00 0.00 1.40
399 400 4.977347 ACGTTTTTAACCGCGAATTGAATT 59.023 33.333 8.23 0.00 0.00 2.17
400 401 4.538917 ACGTTTTTAACCGCGAATTGAAT 58.461 34.783 8.23 0.00 0.00 2.57
401 402 3.950078 ACGTTTTTAACCGCGAATTGAA 58.050 36.364 8.23 1.48 0.00 2.69
402 403 3.248125 AGACGTTTTTAACCGCGAATTGA 59.752 39.130 8.23 0.00 0.00 2.57
403 404 3.547601 AGACGTTTTTAACCGCGAATTG 58.452 40.909 8.23 0.00 0.00 2.32
404 405 3.883631 AGACGTTTTTAACCGCGAATT 57.116 38.095 8.23 3.88 0.00 2.17
405 406 3.547601 CAAGACGTTTTTAACCGCGAAT 58.452 40.909 8.23 0.00 0.00 3.34
406 407 2.850254 GCAAGACGTTTTTAACCGCGAA 60.850 45.455 8.23 0.00 0.00 4.70
407 408 1.333081 GCAAGACGTTTTTAACCGCGA 60.333 47.619 8.23 0.00 0.00 5.87
408 409 1.039487 GCAAGACGTTTTTAACCGCG 58.961 50.000 0.00 0.00 0.00 6.46
409 410 1.039487 CGCAAGACGTTTTTAACCGC 58.961 50.000 0.00 0.00 43.02 5.68
410 411 1.039487 GCGCAAGACGTTTTTAACCG 58.961 50.000 0.30 0.00 46.11 4.44
411 412 1.039487 CGCGCAAGACGTTTTTAACC 58.961 50.000 8.75 0.00 46.11 2.85
412 413 0.424553 GCGCGCAAGACGTTTTTAAC 59.575 50.000 29.10 0.00 46.11 2.01
413 414 0.305313 AGCGCGCAAGACGTTTTTAA 59.695 45.000 35.10 0.00 46.11 1.52
414 415 0.111001 GAGCGCGCAAGACGTTTTTA 60.111 50.000 35.10 0.00 46.11 1.52
415 416 1.368850 GAGCGCGCAAGACGTTTTT 60.369 52.632 35.10 8.08 46.11 1.94
416 417 2.248431 GAGCGCGCAAGACGTTTT 59.752 55.556 35.10 8.99 46.11 2.43
417 418 4.059459 CGAGCGCGCAAGACGTTT 62.059 61.111 35.10 9.89 46.11 3.60
418 419 4.994201 TCGAGCGCGCAAGACGTT 62.994 61.111 35.10 10.81 46.11 3.99
419 420 4.778415 ATCGAGCGCGCAAGACGT 62.778 61.111 35.10 11.72 46.11 4.34
421 422 4.565704 GCATCGAGCGCGCAAGAC 62.566 66.667 35.10 19.36 43.02 3.01
430 431 0.924090 CGTAACTGAAGGCATCGAGC 59.076 55.000 0.00 0.00 44.65 5.03
431 432 0.924090 GCGTAACTGAAGGCATCGAG 59.076 55.000 0.00 0.00 0.00 4.04
432 433 0.800683 CGCGTAACTGAAGGCATCGA 60.801 55.000 0.00 0.00 0.00 3.59
433 434 1.631072 CGCGTAACTGAAGGCATCG 59.369 57.895 0.00 0.00 0.00 3.84
434 435 1.429148 CCCGCGTAACTGAAGGCATC 61.429 60.000 4.92 0.00 0.00 3.91
435 436 1.449601 CCCGCGTAACTGAAGGCAT 60.450 57.895 4.92 0.00 0.00 4.40
436 437 1.534336 TACCCGCGTAACTGAAGGCA 61.534 55.000 4.92 0.00 0.00 4.75
437 438 0.804933 CTACCCGCGTAACTGAAGGC 60.805 60.000 4.92 0.00 0.00 4.35
438 439 0.529378 ACTACCCGCGTAACTGAAGG 59.471 55.000 4.92 0.00 0.00 3.46
439 440 1.471684 AGACTACCCGCGTAACTGAAG 59.528 52.381 4.92 0.00 0.00 3.02
440 441 1.538047 AGACTACCCGCGTAACTGAA 58.462 50.000 4.92 0.00 0.00 3.02
441 442 2.283298 CTAGACTACCCGCGTAACTGA 58.717 52.381 4.92 0.00 0.00 3.41
442 443 1.332997 CCTAGACTACCCGCGTAACTG 59.667 57.143 4.92 0.00 0.00 3.16
443 444 1.210478 TCCTAGACTACCCGCGTAACT 59.790 52.381 4.92 0.00 0.00 2.24
444 445 1.601430 CTCCTAGACTACCCGCGTAAC 59.399 57.143 4.92 0.00 0.00 2.50
445 446 1.475751 CCTCCTAGACTACCCGCGTAA 60.476 57.143 4.92 0.00 0.00 3.18
446 447 0.107456 CCTCCTAGACTACCCGCGTA 59.893 60.000 4.92 0.00 0.00 4.42
447 448 1.153005 CCTCCTAGACTACCCGCGT 60.153 63.158 4.92 0.00 0.00 6.01
448 449 2.553727 GCCTCCTAGACTACCCGCG 61.554 68.421 0.00 0.00 0.00 6.46
449 450 0.756070 AAGCCTCCTAGACTACCCGC 60.756 60.000 0.00 0.00 0.00 6.13
450 451 1.777941 AAAGCCTCCTAGACTACCCG 58.222 55.000 0.00 0.00 0.00 5.28
451 452 6.017830 ACATATAAAGCCTCCTAGACTACCC 58.982 44.000 0.00 0.00 0.00 3.69
452 453 7.541916 AACATATAAAGCCTCCTAGACTACC 57.458 40.000 0.00 0.00 0.00 3.18
453 454 9.517868 TCTAACATATAAAGCCTCCTAGACTAC 57.482 37.037 0.00 0.00 0.00 2.73
457 458 9.175312 CGTATCTAACATATAAAGCCTCCTAGA 57.825 37.037 0.00 0.00 0.00 2.43
458 459 9.175312 TCGTATCTAACATATAAAGCCTCCTAG 57.825 37.037 0.00 0.00 0.00 3.02
459 460 9.696572 ATCGTATCTAACATATAAAGCCTCCTA 57.303 33.333 0.00 0.00 0.00 2.94
460 461 8.470805 CATCGTATCTAACATATAAAGCCTCCT 58.529 37.037 0.00 0.00 0.00 3.69
461 462 8.467598 TCATCGTATCTAACATATAAAGCCTCC 58.532 37.037 0.00 0.00 0.00 4.30
464 465 9.803315 TGATCATCGTATCTAACATATAAAGCC 57.197 33.333 0.00 0.00 0.00 4.35
472 473 8.579863 TGACTGAATGATCATCGTATCTAACAT 58.420 33.333 9.06 0.00 34.37 2.71
473 474 7.940850 TGACTGAATGATCATCGTATCTAACA 58.059 34.615 9.06 2.53 34.37 2.41
474 475 8.803201 TTGACTGAATGATCATCGTATCTAAC 57.197 34.615 9.06 0.21 34.37 2.34
475 476 9.987272 AATTGACTGAATGATCATCGTATCTAA 57.013 29.630 9.06 0.67 34.37 2.10
476 477 9.415544 CAATTGACTGAATGATCATCGTATCTA 57.584 33.333 9.06 3.07 34.37 1.98
477 478 7.930325 ACAATTGACTGAATGATCATCGTATCT 59.070 33.333 13.59 0.00 34.37 1.98
478 479 8.081208 ACAATTGACTGAATGATCATCGTATC 57.919 34.615 13.59 3.35 34.37 2.24
498 499 2.949447 AGGTCAGCCAACAAGACAATT 58.051 42.857 0.00 0.00 37.19 2.32
532 542 2.189521 CCATACCCCTCACGGCAC 59.810 66.667 0.00 0.00 0.00 5.01
604 622 2.492088 GGCTTCCACCAAACTTACCATC 59.508 50.000 0.00 0.00 0.00 3.51
829 893 2.524440 AGATTGGGACCCTATCTCTCCA 59.476 50.000 26.46 0.00 40.92 3.86
954 1415 5.858381 TGCTCTGCTATTCGAAATAGGAAT 58.142 37.500 0.00 0.00 37.79 3.01
1038 1508 0.828762 AGCAGCAAGATGTGGGCAAA 60.829 50.000 0.00 0.00 0.00 3.68
1072 1548 3.470709 CCGCCATGAGAGTATCATTTGT 58.529 45.455 0.00 0.00 46.97 2.83
1285 1839 5.466728 TCTTGAGCTGTGTTGAGTTAATGTC 59.533 40.000 0.00 0.00 0.00 3.06
1349 1903 1.466856 GGATTCAGTGCCAGCATCAA 58.533 50.000 0.00 0.00 0.00 2.57
1388 1954 3.617263 GCTAGTTTGTGTCCTATTGACCG 59.383 47.826 0.00 0.00 43.78 4.79
1560 2135 3.949113 TCAAACCTGTAACCTTGTTCCAC 59.051 43.478 0.00 0.00 0.00 4.02
1612 2187 3.325293 TGAGCCAAGACTCAGATCAAC 57.675 47.619 0.00 0.00 41.72 3.18
1848 2423 1.002087 GTGGAAGACGGTGGTTCATCT 59.998 52.381 0.00 0.00 0.00 2.90
1855 2430 1.535462 GACAAATGTGGAAGACGGTGG 59.465 52.381 0.00 0.00 0.00 4.61
2073 2654 2.497675 TCCTCCTGTTCGATCCTCAAAG 59.502 50.000 0.00 0.00 0.00 2.77
2166 2759 7.398829 TGTAGGGCAATGTAACTTGAGAAATA 58.601 34.615 0.00 0.00 0.00 1.40
2299 2895 4.227300 ACTCACACTAAGCAATTCCCCATA 59.773 41.667 0.00 0.00 0.00 2.74
2524 3129 7.971168 ACTATCTTGATTGCTGTAGTATATCGC 59.029 37.037 0.00 0.00 0.00 4.58
2555 3160 9.429359 CAGTGTATCTAAAGGCTATAATTCCAG 57.571 37.037 0.00 0.00 0.00 3.86
2619 3224 2.076597 AACCAAAACCCCCTCCTCCG 62.077 60.000 0.00 0.00 0.00 4.63
2682 3287 1.340889 GCACCATCAAGCCTTTTGACA 59.659 47.619 0.00 0.00 0.00 3.58
2776 3381 1.159285 TCGCAGCAGAAACCAATCAG 58.841 50.000 0.00 0.00 0.00 2.90
2826 3431 6.969043 ACCATCAAGAGACCCATTTAACATA 58.031 36.000 0.00 0.00 0.00 2.29
2880 3491 4.701956 ATTGTTCCAATTTAGGACAGCG 57.298 40.909 0.00 0.00 37.42 5.18
3046 3657 2.978010 CCTTCCCGCAAACGCTGT 60.978 61.111 0.00 0.00 38.22 4.40
3056 3667 0.179468 TCGGCTAAAATCCCTTCCCG 59.821 55.000 0.00 0.00 35.83 5.14
3279 3899 1.509923 GTGAAGCTTGCTGATGGCC 59.490 57.895 2.10 0.00 40.92 5.36
3559 4311 9.796120 TTACAACTTTCCAACAAATACTGAAAG 57.204 29.630 8.34 8.34 44.57 2.62
3566 4318 8.155821 TCGACATTACAACTTTCCAACAAATA 57.844 30.769 0.00 0.00 0.00 1.40
3571 4323 4.024387 TGCTCGACATTACAACTTTCCAAC 60.024 41.667 0.00 0.00 0.00 3.77
3589 4349 4.508662 ACTTCCTTTATTCCTTCTGCTCG 58.491 43.478 0.00 0.00 0.00 5.03
3657 4418 5.568685 TTTTGCTACAGTGCTTGTTTACA 57.431 34.783 0.00 0.00 41.29 2.41
3662 4423 4.766891 ACCATATTTTGCTACAGTGCTTGT 59.233 37.500 0.00 0.33 43.96 3.16
3669 4430 3.623060 AGCACGACCATATTTTGCTACAG 59.377 43.478 0.00 0.00 41.72 2.74
3731 4493 6.119536 ACTTATTTACTTGGATGATTCGGCA 58.880 36.000 0.00 0.00 0.00 5.69
3732 4494 6.619801 ACTTATTTACTTGGATGATTCGGC 57.380 37.500 0.00 0.00 0.00 5.54
3733 4495 9.503427 GAAAACTTATTTACTTGGATGATTCGG 57.497 33.333 0.00 0.00 0.00 4.30
3775 4539 6.149142 AGTTGTCTGAGAAGATGCATCTTTTC 59.851 38.462 35.90 35.90 46.47 2.29
3818 4582 1.135859 CCTGAGAAGTGCGAATGTTGC 60.136 52.381 0.00 0.00 0.00 4.17
3820 4584 2.550830 ACCTGAGAAGTGCGAATGTT 57.449 45.000 0.00 0.00 0.00 2.71
3824 4588 2.742053 GCATTTACCTGAGAAGTGCGAA 59.258 45.455 0.00 0.00 31.15 4.70
3825 4589 2.346803 GCATTTACCTGAGAAGTGCGA 58.653 47.619 0.00 0.00 31.15 5.10
3826 4590 1.398390 GGCATTTACCTGAGAAGTGCG 59.602 52.381 0.00 0.00 39.63 5.34
3827 4591 2.436417 TGGCATTTACCTGAGAAGTGC 58.564 47.619 0.00 0.00 38.43 4.40
3828 4592 5.393461 GGAAATGGCATTTACCTGAGAAGTG 60.393 44.000 24.39 0.00 31.47 3.16
3829 4593 4.706962 GGAAATGGCATTTACCTGAGAAGT 59.293 41.667 24.39 0.00 31.47 3.01
3830 4594 4.952335 AGGAAATGGCATTTACCTGAGAAG 59.048 41.667 27.43 0.00 33.43 2.85
3907 6115 3.189618 TCAGATGAATGGCAGCAGTAG 57.810 47.619 0.00 0.00 34.69 2.57
3956 6164 0.610232 GGCAATGGACTGCAGGTTCT 60.610 55.000 19.93 0.00 44.52 3.01
4031 6239 1.589716 AAGCAGCAACGAATGGAGCC 61.590 55.000 0.00 0.00 0.00 4.70
4040 6248 6.589830 AGACTATGTATAAAAGCAGCAACG 57.410 37.500 0.00 0.00 0.00 4.10
4091 6299 6.424812 GCAAATTGTTTAAGATGGACAGCTTT 59.575 34.615 8.20 0.00 38.17 3.51
4110 6318 1.539827 GGCTGTCTACGTTGGCAAATT 59.460 47.619 5.68 0.00 0.00 1.82
4124 6332 3.423154 CTGGCGAAACGGGCTGTC 61.423 66.667 0.00 0.00 0.00 3.51
4127 6335 4.643387 AAGCTGGCGAAACGGGCT 62.643 61.111 0.00 0.00 34.52 5.19
4418 6629 2.762745 GCCATATTGTATCGTTCGGGT 58.237 47.619 0.00 0.00 0.00 5.28
4438 6649 2.742589 GCTTTTTAAGTGGGTCTCCTCG 59.257 50.000 0.00 0.00 0.00 4.63
4440 6651 3.394606 TCTGCTTTTTAAGTGGGTCTCCT 59.605 43.478 0.00 0.00 0.00 3.69
4454 6665 9.598517 TTTCATGTTTACTTTTGATCTGCTTTT 57.401 25.926 0.00 0.00 0.00 2.27
4456 6667 8.416329 AGTTTCATGTTTACTTTTGATCTGCTT 58.584 29.630 0.00 0.00 0.00 3.91
4457 6668 7.945134 AGTTTCATGTTTACTTTTGATCTGCT 58.055 30.769 0.00 0.00 0.00 4.24
4475 6686 6.772716 AGGTGTTTGACATGTTCTAGTTTCAT 59.227 34.615 0.00 0.00 0.00 2.57
4477 6688 6.619801 AGGTGTTTGACATGTTCTAGTTTC 57.380 37.500 0.00 0.00 0.00 2.78
4478 6689 6.204882 GCTAGGTGTTTGACATGTTCTAGTTT 59.795 38.462 0.00 0.00 0.00 2.66
4481 6692 4.631813 GGCTAGGTGTTTGACATGTTCTAG 59.368 45.833 0.00 4.84 0.00 2.43
4482 6693 4.286032 AGGCTAGGTGTTTGACATGTTCTA 59.714 41.667 0.00 0.00 0.00 2.10
4483 6694 3.073062 AGGCTAGGTGTTTGACATGTTCT 59.927 43.478 0.00 0.00 0.00 3.01
4484 6695 3.412386 AGGCTAGGTGTTTGACATGTTC 58.588 45.455 0.00 0.00 0.00 3.18
4485 6696 3.508845 AGGCTAGGTGTTTGACATGTT 57.491 42.857 0.00 0.00 0.00 2.71


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.