Multiple sequence alignment - TraesCS1A01G014900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G014900 chr1A 100.000 4651 0 0 1 4651 8145528 8140878 0.000000e+00 8589.0
1 TraesCS1A01G014900 chr1A 87.114 2949 314 38 1023 3941 7834679 7837591 0.000000e+00 3280.0
2 TraesCS1A01G014900 chr1A 84.938 2762 327 42 859 3576 8326967 8329683 0.000000e+00 2713.0
3 TraesCS1A01G014900 chr1A 91.469 422 36 0 156 577 513732052 513731631 8.670000e-162 580.0
4 TraesCS1A01G014900 chr1D 95.024 3075 135 8 856 3920 6714783 6711717 0.000000e+00 4815.0
5 TraesCS1A01G014900 chr1D 87.417 2710 273 37 1013 3692 407672559 407669888 0.000000e+00 3053.0
6 TraesCS1A01G014900 chr1D 85.201 2757 335 38 856 3576 6898275 6900994 0.000000e+00 2763.0
7 TraesCS1A01G014900 chr1D 82.544 2807 384 64 980 3736 6913119 6915869 0.000000e+00 2372.0
8 TraesCS1A01G014900 chr1D 80.943 3012 464 55 619 3576 6722007 6719052 0.000000e+00 2281.0
9 TraesCS1A01G014900 chr1D 93.294 343 23 0 4165 4507 6694114 6693772 1.490000e-139 507.0
10 TraesCS1A01G014900 chr1D 92.574 202 6 6 577 769 6715183 6714982 9.850000e-72 281.0
11 TraesCS1A01G014900 chr1D 81.366 322 28 12 3743 4035 407669763 407669445 2.800000e-57 233.0
12 TraesCS1A01G014900 chr4B 89.947 3213 251 38 737 3933 36636127 36632971 0.000000e+00 4078.0
13 TraesCS1A01G014900 chr4B 90.353 539 44 1 4048 4586 36615718 36615188 0.000000e+00 701.0
14 TraesCS1A01G014900 chr1B 92.857 2366 142 12 1572 3933 8855369 8853027 0.000000e+00 3408.0
15 TraesCS1A01G014900 chr1B 84.407 2764 336 52 859 3576 548200066 548197352 0.000000e+00 2628.0
16 TraesCS1A01G014900 chr1B 82.668 2331 299 48 914 3208 9175258 9177519 0.000000e+00 1969.0
17 TraesCS1A01G014900 chr1B 85.928 803 81 17 936 1727 9281183 9281964 0.000000e+00 828.0
18 TraesCS1A01G014900 chr1B 94.567 497 26 1 1041 1537 8855868 8855373 0.000000e+00 767.0
19 TraesCS1A01G014900 chr1B 91.060 302 26 1 4042 4342 8852128 8851827 1.560000e-109 407.0
20 TraesCS1A01G014900 chr1B 88.189 254 17 10 577 820 8856591 8856341 1.640000e-74 291.0
21 TraesCS1A01G014900 chr1B 79.128 321 24 14 3743 4036 548190921 548190617 1.030000e-41 182.0
22 TraesCS1A01G014900 chr1B 83.908 174 20 1 4406 4579 8851827 8851662 4.820000e-35 159.0
23 TraesCS1A01G014900 chr1B 91.045 67 6 0 87 153 8856650 8856584 1.780000e-14 91.6
24 TraesCS1A01G014900 chr1B 85.393 89 9 4 3854 3939 8817141 8817054 6.410000e-14 89.8
25 TraesCS1A01G014900 chr1B 90.141 71 4 2 84 151 9166737 9166807 6.410000e-14 89.8
26 TraesCS1A01G014900 chr1B 94.231 52 3 0 3984 4035 8853030 8852979 3.860000e-11 80.5
27 TraesCS1A01G014900 chr5A 86.912 2934 315 33 1021 3920 12194222 12191324 0.000000e+00 3227.0
28 TraesCS1A01G014900 chr5B 86.787 2929 314 34 1028 3920 13776132 13773241 0.000000e+00 3197.0
29 TraesCS1A01G014900 chr5B 85.652 2732 323 43 859 3571 549547824 549550505 0.000000e+00 2809.0
30 TraesCS1A01G014900 chr5B 85.831 367 23 19 577 924 549547374 549547730 3.420000e-96 363.0
31 TraesCS1A01G014900 chr2D 83.327 2765 382 50 962 3692 469983972 469986691 0.000000e+00 2479.0
32 TraesCS1A01G014900 chr5D 85.985 1691 181 29 2387 4032 18085120 18086799 0.000000e+00 1759.0
33 TraesCS1A01G014900 chr7A 91.943 422 34 0 156 577 218188197 218188618 4.010000e-165 592.0
34 TraesCS1A01G014900 chr7A 91.706 422 35 0 156 577 722081651 722081230 1.860000e-163 586.0
35 TraesCS1A01G014900 chr7A 90.661 439 34 6 155 589 669050561 669050126 1.120000e-160 577.0
36 TraesCS1A01G014900 chr7A 91.080 426 36 2 156 581 635474534 635474957 4.040000e-160 575.0
37 TraesCS1A01G014900 chr3A 91.569 427 35 1 151 577 734516430 734516005 5.180000e-164 588.0
38 TraesCS1A01G014900 chr3A 91.274 424 37 0 156 579 66410741 66410318 3.120000e-161 579.0
39 TraesCS1A01G014900 chr3A 90.867 427 38 1 156 581 68571092 68570666 5.220000e-159 571.0
40 TraesCS1A01G014900 chr4A 91.647 419 35 0 156 574 641361089 641361507 8.670000e-162 580.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G014900 chr1A 8140878 8145528 4650 True 8589.000000 8589 100.000000 1 4651 1 chr1A.!!$R1 4650
1 TraesCS1A01G014900 chr1A 7834679 7837591 2912 False 3280.000000 3280 87.114000 1023 3941 1 chr1A.!!$F1 2918
2 TraesCS1A01G014900 chr1A 8326967 8329683 2716 False 2713.000000 2713 84.938000 859 3576 1 chr1A.!!$F2 2717
3 TraesCS1A01G014900 chr1D 6898275 6900994 2719 False 2763.000000 2763 85.201000 856 3576 1 chr1D.!!$F1 2720
4 TraesCS1A01G014900 chr1D 6711717 6722007 10290 True 2459.000000 4815 89.513667 577 3920 3 chr1D.!!$R2 3343
5 TraesCS1A01G014900 chr1D 6913119 6915869 2750 False 2372.000000 2372 82.544000 980 3736 1 chr1D.!!$F2 2756
6 TraesCS1A01G014900 chr1D 407669445 407672559 3114 True 1643.000000 3053 84.391500 1013 4035 2 chr1D.!!$R3 3022
7 TraesCS1A01G014900 chr4B 36632971 36636127 3156 True 4078.000000 4078 89.947000 737 3933 1 chr4B.!!$R2 3196
8 TraesCS1A01G014900 chr4B 36615188 36615718 530 True 701.000000 701 90.353000 4048 4586 1 chr4B.!!$R1 538
9 TraesCS1A01G014900 chr1B 548197352 548200066 2714 True 2628.000000 2628 84.407000 859 3576 1 chr1B.!!$R3 2717
10 TraesCS1A01G014900 chr1B 9175258 9177519 2261 False 1969.000000 1969 82.668000 914 3208 1 chr1B.!!$F2 2294
11 TraesCS1A01G014900 chr1B 9281183 9281964 781 False 828.000000 828 85.928000 936 1727 1 chr1B.!!$F3 791
12 TraesCS1A01G014900 chr1B 8851662 8856650 4988 True 743.442857 3408 90.836714 87 4579 7 chr1B.!!$R4 4492
13 TraesCS1A01G014900 chr5A 12191324 12194222 2898 True 3227.000000 3227 86.912000 1021 3920 1 chr5A.!!$R1 2899
14 TraesCS1A01G014900 chr5B 13773241 13776132 2891 True 3197.000000 3197 86.787000 1028 3920 1 chr5B.!!$R1 2892
15 TraesCS1A01G014900 chr5B 549547374 549550505 3131 False 1586.000000 2809 85.741500 577 3571 2 chr5B.!!$F1 2994
16 TraesCS1A01G014900 chr2D 469983972 469986691 2719 False 2479.000000 2479 83.327000 962 3692 1 chr2D.!!$F1 2730
17 TraesCS1A01G014900 chr5D 18085120 18086799 1679 False 1759.000000 1759 85.985000 2387 4032 1 chr5D.!!$F1 1645

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
390 391 0.035439 CATCTTGGCGGTAGGGTTGT 60.035 55.0 0.00 0.00 0.00 3.32 F
431 432 0.036765 TGGCGGTAGCGATGTTTTCT 60.037 50.0 20.16 0.00 46.35 2.52 F
464 465 0.179108 CTGGCGGTAGGCTGTTAGAC 60.179 60.0 0.00 0.00 44.18 2.59 F
486 487 0.249120 TACCACCATGAACTCTGGCG 59.751 55.0 0.00 0.00 37.27 5.69 F
733 6986 0.257039 AGGTCCATGGCCACTTGATC 59.743 55.0 22.33 5.21 0.00 2.92 F
2359 9057 0.390492 GGCATGGGGAATTGCTTAGC 59.610 55.0 0.00 0.00 38.88 3.09 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2110 8808 0.904865 TGCACCCTCCTGTTCGATCT 60.905 55.000 0.0 0.0 0.00 2.75 R
2359 9057 6.063640 TCAATGCCATCATTCAGATTTACG 57.936 37.500 0.0 0.0 40.74 3.18 R
2512 9214 4.397420 TCAATAACAACAGCATGACCACT 58.603 39.130 0.0 0.0 39.69 4.00 R
2531 9236 6.985645 CACTTGAATTTGTTCCTCCAAATCAA 59.014 34.615 0.0 0.0 42.63 2.57 R
2615 9327 0.304705 GCACGAACCAAGTCAGTGTG 59.695 55.000 0.0 0.0 35.46 3.82 R
4143 11871 0.036105 TCTGATGTGACGCTGGCAAT 60.036 50.000 0.0 0.0 0.00 3.56 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 7.801547 GCATATTATTCGCAATTGTAGCATT 57.198 32.000 7.40 0.00 0.00 3.56
25 26 7.878608 GCATATTATTCGCAATTGTAGCATTC 58.121 34.615 7.40 0.00 0.00 2.67
26 27 7.008628 GCATATTATTCGCAATTGTAGCATTCC 59.991 37.037 7.40 0.00 0.00 3.01
29 30 1.102154 CGCAATTGTAGCATTCCCCA 58.898 50.000 7.40 0.00 0.00 4.96
30 31 1.066002 CGCAATTGTAGCATTCCCCAG 59.934 52.381 7.40 0.00 0.00 4.45
32 33 2.360165 GCAATTGTAGCATTCCCCAGAG 59.640 50.000 7.40 0.00 0.00 3.35
33 34 2.355010 ATTGTAGCATTCCCCAGAGC 57.645 50.000 0.00 0.00 0.00 4.09
34 35 1.289160 TTGTAGCATTCCCCAGAGCT 58.711 50.000 0.00 0.00 40.92 4.09
35 36 0.543277 TGTAGCATTCCCCAGAGCTG 59.457 55.000 0.00 0.00 37.94 4.24
45 46 3.942351 CCAGAGCTGGTTGACATGA 57.058 52.632 8.38 0.00 45.53 3.07
47 48 1.808945 CCAGAGCTGGTTGACATGAAC 59.191 52.381 8.38 0.00 45.53 3.18
49 50 1.070758 AGAGCTGGTTGACATGAACGT 59.929 47.619 0.00 0.00 0.00 3.99
50 51 1.195448 GAGCTGGTTGACATGAACGTG 59.805 52.381 0.00 0.00 0.00 4.49
51 52 0.944386 GCTGGTTGACATGAACGTGT 59.056 50.000 0.00 0.00 34.39 4.49
52 53 2.139917 GCTGGTTGACATGAACGTGTA 58.860 47.619 0.00 0.00 31.16 2.90
53 54 2.096417 GCTGGTTGACATGAACGTGTAC 60.096 50.000 0.00 0.00 31.16 2.90
54 55 3.127589 CTGGTTGACATGAACGTGTACA 58.872 45.455 0.00 0.00 31.16 2.90
55 56 3.734463 TGGTTGACATGAACGTGTACAT 58.266 40.909 0.00 0.00 31.16 2.29
56 57 4.130857 TGGTTGACATGAACGTGTACATT 58.869 39.130 0.00 0.00 31.16 2.71
57 58 5.298347 TGGTTGACATGAACGTGTACATTA 58.702 37.500 0.00 0.00 31.16 1.90
58 59 5.407084 TGGTTGACATGAACGTGTACATTAG 59.593 40.000 0.00 0.00 31.16 1.73
59 60 5.313623 GTTGACATGAACGTGTACATTAGC 58.686 41.667 0.00 0.00 31.16 3.09
60 61 4.561105 TGACATGAACGTGTACATTAGCA 58.439 39.130 0.00 0.00 31.16 3.49
61 62 4.991687 TGACATGAACGTGTACATTAGCAA 59.008 37.500 0.00 0.00 31.16 3.91
65 66 7.367285 ACATGAACGTGTACATTAGCAATTTT 58.633 30.769 0.00 0.00 0.00 1.82
85 86 5.667539 TTTTTGTTGATTGGTTGAGGTCA 57.332 34.783 0.00 0.00 0.00 4.02
123 124 0.666913 GCAGTTAGCATGCCATGAGG 59.333 55.000 15.66 1.01 44.79 3.86
124 125 1.748244 GCAGTTAGCATGCCATGAGGA 60.748 52.381 15.66 0.00 44.79 3.71
125 126 2.646930 CAGTTAGCATGCCATGAGGAA 58.353 47.619 15.66 0.00 36.89 3.36
126 127 3.018856 CAGTTAGCATGCCATGAGGAAA 58.981 45.455 15.66 0.00 36.89 3.13
127 128 3.635373 CAGTTAGCATGCCATGAGGAAAT 59.365 43.478 15.66 0.00 36.89 2.17
128 129 4.823442 CAGTTAGCATGCCATGAGGAAATA 59.177 41.667 15.66 0.00 36.89 1.40
131 132 6.552350 AGTTAGCATGCCATGAGGAAATATTT 59.448 34.615 15.66 0.00 36.89 1.40
133 134 4.652421 AGCATGCCATGAGGAAATATTTGT 59.348 37.500 15.66 0.00 36.89 2.83
134 135 4.748102 GCATGCCATGAGGAAATATTTGTG 59.252 41.667 9.33 0.00 36.89 3.33
135 136 5.294356 CATGCCATGAGGAAATATTTGTGG 58.706 41.667 5.17 7.02 36.89 4.17
136 137 3.721035 GCCATGAGGAAATATTTGTGGC 58.279 45.455 5.17 12.44 43.29 5.01
137 138 3.385755 GCCATGAGGAAATATTTGTGGCT 59.614 43.478 20.03 0.00 45.50 4.75
138 139 4.141869 GCCATGAGGAAATATTTGTGGCTT 60.142 41.667 20.03 1.65 45.50 4.35
139 140 5.068987 GCCATGAGGAAATATTTGTGGCTTA 59.931 40.000 20.03 0.87 45.50 3.09
140 141 6.736794 GCCATGAGGAAATATTTGTGGCTTAG 60.737 42.308 20.03 3.45 45.50 2.18
141 142 5.835113 TGAGGAAATATTTGTGGCTTAGC 57.165 39.130 5.17 0.00 0.00 3.09
142 143 5.260424 TGAGGAAATATTTGTGGCTTAGCA 58.740 37.500 5.17 0.00 0.00 3.49
143 144 5.125417 TGAGGAAATATTTGTGGCTTAGCAC 59.875 40.000 5.17 3.25 0.00 4.40
144 145 5.264395 AGGAAATATTTGTGGCTTAGCACT 58.736 37.500 5.17 0.00 0.00 4.40
145 146 5.358160 AGGAAATATTTGTGGCTTAGCACTC 59.642 40.000 5.17 0.00 0.00 3.51
146 147 5.450550 GGAAATATTTGTGGCTTAGCACTCC 60.451 44.000 5.17 0.84 0.00 3.85
147 148 1.839424 ATTTGTGGCTTAGCACTCCC 58.161 50.000 6.53 0.00 0.00 4.30
148 149 0.251165 TTTGTGGCTTAGCACTCCCC 60.251 55.000 6.53 0.00 0.00 4.81
149 150 1.422977 TTGTGGCTTAGCACTCCCCA 61.423 55.000 6.53 0.00 0.00 4.96
150 151 1.078143 GTGGCTTAGCACTCCCCAG 60.078 63.158 6.53 0.00 0.00 4.45
151 152 1.229496 TGGCTTAGCACTCCCCAGA 60.229 57.895 6.53 0.00 0.00 3.86
152 153 1.267574 TGGCTTAGCACTCCCCAGAG 61.268 60.000 6.53 0.00 46.36 3.35
154 155 1.621672 GCTTAGCACTCCCCAGAGCT 61.622 60.000 0.00 0.00 46.99 4.09
155 156 0.177604 CTTAGCACTCCCCAGAGCTG 59.822 60.000 0.00 0.00 45.26 4.24
156 157 1.267574 TTAGCACTCCCCAGAGCTGG 61.268 60.000 9.59 9.59 45.26 4.85
169 170 5.841957 CCAGAGCTGGCTAAATTTTATGT 57.158 39.130 3.18 0.00 44.73 2.29
170 171 6.212888 CCAGAGCTGGCTAAATTTTATGTT 57.787 37.500 3.18 0.00 44.73 2.71
171 172 6.633856 CCAGAGCTGGCTAAATTTTATGTTT 58.366 36.000 3.18 0.00 44.73 2.83
173 174 7.063780 CCAGAGCTGGCTAAATTTTATGTTTTG 59.936 37.037 3.18 0.00 44.73 2.44
174 175 7.814107 CAGAGCTGGCTAAATTTTATGTTTTGA 59.186 33.333 0.00 0.00 0.00 2.69
175 176 7.814587 AGAGCTGGCTAAATTTTATGTTTTGAC 59.185 33.333 0.00 0.00 0.00 3.18
176 177 6.873605 AGCTGGCTAAATTTTATGTTTTGACC 59.126 34.615 0.00 0.00 0.00 4.02
177 178 6.092122 GCTGGCTAAATTTTATGTTTTGACCC 59.908 38.462 0.00 0.00 0.00 4.46
179 180 7.740805 TGGCTAAATTTTATGTTTTGACCCTT 58.259 30.769 0.00 0.00 0.00 3.95
180 181 8.214364 TGGCTAAATTTTATGTTTTGACCCTTT 58.786 29.630 0.00 0.00 0.00 3.11
181 182 9.062524 GGCTAAATTTTATGTTTTGACCCTTTT 57.937 29.630 0.00 0.00 0.00 2.27
185 186 9.898152 AAATTTTATGTTTTGACCCTTTTCTGA 57.102 25.926 0.00 0.00 0.00 3.27
186 187 9.898152 AATTTTATGTTTTGACCCTTTTCTGAA 57.102 25.926 0.00 0.00 0.00 3.02
189 190 5.079689 TGTTTTGACCCTTTTCTGAAACC 57.920 39.130 1.58 0.00 0.00 3.27
190 191 4.775253 TGTTTTGACCCTTTTCTGAAACCT 59.225 37.500 1.58 0.00 0.00 3.50
191 192 5.952947 TGTTTTGACCCTTTTCTGAAACCTA 59.047 36.000 1.58 0.00 0.00 3.08
192 193 6.609616 TGTTTTGACCCTTTTCTGAAACCTAT 59.390 34.615 1.58 0.00 0.00 2.57
193 194 7.125053 TGTTTTGACCCTTTTCTGAAACCTATT 59.875 33.333 1.58 0.00 0.00 1.73
196 197 6.369629 TGACCCTTTTCTGAAACCTATTCAA 58.630 36.000 1.58 0.00 0.00 2.69
197 198 6.490040 TGACCCTTTTCTGAAACCTATTCAAG 59.510 38.462 1.58 0.00 0.00 3.02
198 199 6.610830 ACCCTTTTCTGAAACCTATTCAAGA 58.389 36.000 1.58 0.00 0.00 3.02
202 203 9.415544 CCTTTTCTGAAACCTATTCAAGATTTG 57.584 33.333 1.58 0.00 0.00 2.32
204 205 9.965824 TTTTCTGAAACCTATTCAAGATTTGAC 57.034 29.630 1.58 0.00 39.87 3.18
205 206 7.687941 TCTGAAACCTATTCAAGATTTGACC 57.312 36.000 0.00 0.00 39.87 4.02
206 207 6.659242 TCTGAAACCTATTCAAGATTTGACCC 59.341 38.462 0.00 0.00 39.87 4.46
207 208 6.552008 TGAAACCTATTCAAGATTTGACCCT 58.448 36.000 0.00 0.00 39.87 4.34
209 210 7.829211 TGAAACCTATTCAAGATTTGACCCTAG 59.171 37.037 0.00 0.00 39.87 3.02
210 211 6.893020 ACCTATTCAAGATTTGACCCTAGT 57.107 37.500 0.00 0.00 39.87 2.57
212 213 7.699878 ACCTATTCAAGATTTGACCCTAGTTT 58.300 34.615 0.00 0.00 39.87 2.66
213 214 7.611855 ACCTATTCAAGATTTGACCCTAGTTTG 59.388 37.037 0.00 0.00 39.87 2.93
215 216 9.231297 CTATTCAAGATTTGACCCTAGTTTGAA 57.769 33.333 0.00 0.00 39.87 2.69
217 218 8.477419 TTCAAGATTTGACCCTAGTTTGAATT 57.523 30.769 0.00 0.00 39.87 2.17
219 220 7.944554 TCAAGATTTGACCCTAGTTTGAATTCT 59.055 33.333 7.05 0.00 34.08 2.40
220 221 8.579863 CAAGATTTGACCCTAGTTTGAATTCTT 58.420 33.333 7.05 0.00 0.00 2.52
221 222 8.712228 AGATTTGACCCTAGTTTGAATTCTTT 57.288 30.769 7.05 0.00 0.00 2.52
222 223 9.147732 AGATTTGACCCTAGTTTGAATTCTTTT 57.852 29.630 7.05 0.00 0.00 2.27
223 224 9.764363 GATTTGACCCTAGTTTGAATTCTTTTT 57.236 29.630 7.05 0.00 0.00 1.94
224 225 8.940768 TTTGACCCTAGTTTGAATTCTTTTTG 57.059 30.769 7.05 0.00 0.00 2.44
225 226 7.889873 TGACCCTAGTTTGAATTCTTTTTGA 57.110 32.000 7.05 0.00 0.00 2.69
227 228 7.777910 TGACCCTAGTTTGAATTCTTTTTGAGA 59.222 33.333 7.05 0.00 0.00 3.27
228 229 8.712228 ACCCTAGTTTGAATTCTTTTTGAGAT 57.288 30.769 7.05 0.00 33.49 2.75
245 246 8.816640 TTTTGAGATTTGATCTTTTTGCTACC 57.183 30.769 0.00 0.00 40.38 3.18
248 249 3.569250 TTTGATCTTTTTGCTACCGCC 57.431 42.857 0.00 0.00 34.43 6.13
249 250 2.192664 TGATCTTTTTGCTACCGCCA 57.807 45.000 0.00 0.00 34.43 5.69
250 251 2.083774 TGATCTTTTTGCTACCGCCAG 58.916 47.619 0.00 0.00 34.43 4.85
251 252 1.401905 GATCTTTTTGCTACCGCCAGG 59.598 52.381 0.00 0.00 45.13 4.45
252 253 1.212751 CTTTTTGCTACCGCCAGGC 59.787 57.895 0.00 0.00 42.76 4.85
254 255 1.801309 TTTTTGCTACCGCCAGGCAC 61.801 55.000 13.30 0.00 42.76 5.01
257 258 4.489771 GCTACCGCCAGGCACCAT 62.490 66.667 13.30 0.00 42.76 3.55
258 259 2.514592 CTACCGCCAGGCACCATG 60.515 66.667 13.30 0.00 42.76 3.66
259 260 4.108299 TACCGCCAGGCACCATGG 62.108 66.667 13.30 11.19 42.76 3.66
264 265 2.676608 CCAGGCACCATGGCAGTA 59.323 61.111 13.04 0.00 46.46 2.74
265 266 1.452651 CCAGGCACCATGGCAGTAG 60.453 63.158 13.04 0.00 46.46 2.57
266 267 1.452651 CAGGCACCATGGCAGTAGG 60.453 63.158 13.04 0.00 46.46 3.18
267 268 2.124151 GGCACCATGGCAGTAGGG 60.124 66.667 13.04 2.62 43.14 3.53
268 269 2.677228 GCACCATGGCAGTAGGGT 59.323 61.111 13.04 3.21 34.56 4.34
269 270 1.632018 GGCACCATGGCAGTAGGGTA 61.632 60.000 13.04 0.00 43.14 3.69
270 271 0.474184 GCACCATGGCAGTAGGGTAT 59.526 55.000 13.04 0.00 32.05 2.73
271 272 1.815408 GCACCATGGCAGTAGGGTATG 60.815 57.143 13.04 0.00 32.05 2.39
272 273 1.768275 CACCATGGCAGTAGGGTATGA 59.232 52.381 13.04 0.00 32.05 2.15
273 274 1.768870 ACCATGGCAGTAGGGTATGAC 59.231 52.381 13.04 0.00 32.05 3.06
274 275 1.768275 CCATGGCAGTAGGGTATGACA 59.232 52.381 0.00 0.00 39.20 3.58
275 276 2.224378 CCATGGCAGTAGGGTATGACAG 60.224 54.545 0.00 0.00 38.00 3.51
277 278 0.106894 GGCAGTAGGGTATGACAGCC 59.893 60.000 0.00 0.00 45.89 4.85
283 284 1.069258 GGGTATGACAGCCTACCGC 59.931 63.158 0.00 0.00 41.95 5.68
284 285 1.299926 GGTATGACAGCCTACCGCG 60.300 63.158 0.00 0.00 44.76 6.46
286 287 0.101759 GTATGACAGCCTACCGCGAA 59.898 55.000 8.23 0.00 44.76 4.70
287 288 0.384309 TATGACAGCCTACCGCGAAG 59.616 55.000 8.23 4.27 44.76 3.79
288 289 2.202756 GACAGCCTACCGCGAAGG 60.203 66.667 19.62 19.62 44.76 3.46
301 302 2.901042 GAAGGTCCCTGGCGGTAG 59.099 66.667 0.00 0.00 0.00 3.18
302 303 2.687566 AAGGTCCCTGGCGGTAGG 60.688 66.667 0.00 0.00 37.59 3.18
308 309 4.028490 CCTGGCGGTAGGGTTGCA 62.028 66.667 0.00 0.00 34.06 4.08
311 312 3.518068 GGCGGTAGGGTTGCATGC 61.518 66.667 11.82 11.82 0.00 4.06
312 313 3.518068 GCGGTAGGGTTGCATGCC 61.518 66.667 16.68 0.00 0.00 4.40
313 314 2.828549 CGGTAGGGTTGCATGCCC 60.829 66.667 16.68 16.67 46.43 5.36
318 319 2.828549 GGGTTGCATGCCCTACCG 60.829 66.667 16.68 0.00 42.81 4.02
319 320 3.518068 GGTTGCATGCCCTACCGC 61.518 66.667 16.68 0.00 0.00 5.68
322 323 3.575703 TTGCATGCCCTACCGCCAA 62.576 57.895 16.68 0.00 0.00 4.52
323 324 2.753849 GCATGCCCTACCGCCAAA 60.754 61.111 6.36 0.00 0.00 3.28
326 327 0.108851 CATGCCCTACCGCCAAAAAC 60.109 55.000 0.00 0.00 0.00 2.43
328 329 1.605451 GCCCTACCGCCAAAAACCT 60.605 57.895 0.00 0.00 0.00 3.50
329 330 1.592400 GCCCTACCGCCAAAAACCTC 61.592 60.000 0.00 0.00 0.00 3.85
330 331 0.963856 CCCTACCGCCAAAAACCTCC 60.964 60.000 0.00 0.00 0.00 4.30
332 333 1.279846 CCTACCGCCAAAAACCTCCTA 59.720 52.381 0.00 0.00 0.00 2.94
334 335 1.905637 ACCGCCAAAAACCTCCTAAG 58.094 50.000 0.00 0.00 0.00 2.18
335 336 1.144298 ACCGCCAAAAACCTCCTAAGT 59.856 47.619 0.00 0.00 0.00 2.24
337 338 3.009805 ACCGCCAAAAACCTCCTAAGTAT 59.990 43.478 0.00 0.00 0.00 2.12
338 339 4.014406 CCGCCAAAAACCTCCTAAGTATT 58.986 43.478 0.00 0.00 0.00 1.89
339 340 4.142469 CCGCCAAAAACCTCCTAAGTATTG 60.142 45.833 0.00 0.00 0.00 1.90
340 341 4.698304 CGCCAAAAACCTCCTAAGTATTGA 59.302 41.667 0.00 0.00 0.00 2.57
341 342 5.182380 CGCCAAAAACCTCCTAAGTATTGAA 59.818 40.000 0.00 0.00 0.00 2.69
342 343 6.387465 GCCAAAAACCTCCTAAGTATTGAAC 58.613 40.000 0.00 0.00 0.00 3.18
343 344 6.015772 GCCAAAAACCTCCTAAGTATTGAACA 60.016 38.462 0.00 0.00 0.00 3.18
344 345 7.368059 CCAAAAACCTCCTAAGTATTGAACAC 58.632 38.462 0.00 0.00 0.00 3.32
345 346 7.013846 CCAAAAACCTCCTAAGTATTGAACACA 59.986 37.037 0.00 0.00 0.00 3.72
346 347 7.745620 AAAACCTCCTAAGTATTGAACACAG 57.254 36.000 0.00 0.00 0.00 3.66
347 348 6.435292 AACCTCCTAAGTATTGAACACAGT 57.565 37.500 0.00 0.00 0.00 3.55
348 349 5.794894 ACCTCCTAAGTATTGAACACAGTG 58.205 41.667 0.00 0.00 0.00 3.66
350 351 4.242475 TCCTAAGTATTGAACACAGTGCG 58.758 43.478 0.00 0.00 0.00 5.34
351 352 3.994392 CCTAAGTATTGAACACAGTGCGT 59.006 43.478 0.00 0.00 0.00 5.24
359 360 2.961721 CACAGTGCGTGCTCGTGT 60.962 61.111 10.18 3.65 39.19 4.49
360 361 2.658593 ACAGTGCGTGCTCGTGTC 60.659 61.111 10.18 1.23 39.49 3.67
361 362 2.355126 CAGTGCGTGCTCGTGTCT 60.355 61.111 10.18 3.46 39.49 3.41
362 363 1.081442 CAGTGCGTGCTCGTGTCTA 60.081 57.895 10.18 0.00 39.49 2.59
363 364 1.081376 AGTGCGTGCTCGTGTCTAC 60.081 57.895 10.18 2.52 39.49 2.59
364 365 1.081376 GTGCGTGCTCGTGTCTACT 60.081 57.895 10.18 0.00 39.49 2.57
365 366 1.081442 TGCGTGCTCGTGTCTACTG 60.081 57.895 10.18 0.00 39.49 2.74
366 367 2.437343 GCGTGCTCGTGTCTACTGC 61.437 63.158 10.18 0.00 39.49 4.40
368 369 1.289066 GTGCTCGTGTCTACTGCCA 59.711 57.895 0.00 0.00 0.00 4.92
369 370 0.319555 GTGCTCGTGTCTACTGCCAA 60.320 55.000 0.00 0.00 0.00 4.52
372 373 0.038251 CTCGTGTCTACTGCCAAGCA 60.038 55.000 0.00 0.00 36.92 3.91
373 374 0.608130 TCGTGTCTACTGCCAAGCAT 59.392 50.000 0.00 0.00 38.13 3.79
374 375 1.002366 CGTGTCTACTGCCAAGCATC 58.998 55.000 0.00 0.00 38.13 3.91
377 378 2.417933 GTGTCTACTGCCAAGCATCTTG 59.582 50.000 0.00 0.00 38.13 3.02
383 384 4.635769 CCAAGCATCTTGGCGGTA 57.364 55.556 12.09 0.00 39.27 4.02
384 385 2.397751 CCAAGCATCTTGGCGGTAG 58.602 57.895 12.09 0.00 39.27 3.18
385 386 1.097547 CCAAGCATCTTGGCGGTAGG 61.098 60.000 12.09 0.00 39.27 3.18
387 388 1.562672 AAGCATCTTGGCGGTAGGGT 61.563 55.000 0.00 0.00 39.27 4.34
388 389 1.077716 GCATCTTGGCGGTAGGGTT 60.078 57.895 0.00 0.00 0.00 4.11
389 390 1.376609 GCATCTTGGCGGTAGGGTTG 61.377 60.000 0.00 0.00 0.00 3.77
390 391 0.035439 CATCTTGGCGGTAGGGTTGT 60.035 55.000 0.00 0.00 0.00 3.32
392 393 2.281900 TTGGCGGTAGGGTTGTGC 60.282 61.111 0.00 0.00 0.00 4.57
393 394 3.121406 TTGGCGGTAGGGTTGTGCA 62.121 57.895 0.00 0.00 0.00 4.57
394 395 2.746277 GGCGGTAGGGTTGTGCAG 60.746 66.667 0.00 0.00 0.00 4.41
395 396 2.032071 GCGGTAGGGTTGTGCAGT 59.968 61.111 0.00 0.00 0.00 4.40
397 398 1.671742 CGGTAGGGTTGTGCAGTCT 59.328 57.895 0.00 0.00 0.00 3.24
398 399 0.892755 CGGTAGGGTTGTGCAGTCTA 59.107 55.000 0.00 0.00 0.00 2.59
403 404 2.033194 GGTTGTGCAGTCTACCGCC 61.033 63.158 0.00 0.00 0.00 6.13
404 405 1.301401 GTTGTGCAGTCTACCGCCA 60.301 57.895 0.00 0.00 0.00 5.69
405 406 1.005037 TTGTGCAGTCTACCGCCAG 60.005 57.895 0.00 0.00 0.00 4.85
407 408 4.082523 TGCAGTCTACCGCCAGCC 62.083 66.667 0.00 0.00 0.00 4.85
408 409 4.840005 GCAGTCTACCGCCAGCCC 62.840 72.222 0.00 0.00 0.00 5.19
409 410 4.514577 CAGTCTACCGCCAGCCCG 62.515 72.222 0.00 0.00 0.00 6.13
424 425 4.524318 CCGGTTGGCGGTAGCGAT 62.524 66.667 20.16 0.00 46.35 4.58
425 426 3.261951 CGGTTGGCGGTAGCGATG 61.262 66.667 20.16 0.00 46.35 3.84
426 427 2.125269 GGTTGGCGGTAGCGATGT 60.125 61.111 20.16 0.00 46.35 3.06
427 428 1.743995 GGTTGGCGGTAGCGATGTT 60.744 57.895 20.16 0.00 46.35 2.71
428 429 1.303091 GGTTGGCGGTAGCGATGTTT 61.303 55.000 20.16 0.00 46.35 2.83
430 431 0.800012 TTGGCGGTAGCGATGTTTTC 59.200 50.000 20.16 0.00 46.35 2.29
431 432 0.036765 TGGCGGTAGCGATGTTTTCT 60.037 50.000 20.16 0.00 46.35 2.52
432 433 1.205179 TGGCGGTAGCGATGTTTTCTA 59.795 47.619 20.16 0.00 46.35 2.10
433 434 1.591619 GGCGGTAGCGATGTTTTCTAC 59.408 52.381 20.16 0.00 46.35 2.59
434 435 1.591619 GCGGTAGCGATGTTTTCTACC 59.408 52.381 20.16 7.43 45.43 3.18
436 437 1.591619 GGTAGCGATGTTTTCTACCGC 59.408 52.381 0.00 0.00 41.78 5.68
437 438 1.591619 GTAGCGATGTTTTCTACCGCC 59.408 52.381 0.00 0.00 46.09 6.13
438 439 0.036765 AGCGATGTTTTCTACCGCCA 60.037 50.000 0.00 0.00 46.09 5.69
440 441 1.198178 GCGATGTTTTCTACCGCCAAA 59.802 47.619 0.00 0.00 39.97 3.28
441 442 2.727916 GCGATGTTTTCTACCGCCAAAG 60.728 50.000 0.00 0.00 39.97 2.77
443 444 3.424433 CGATGTTTTCTACCGCCAAAGTC 60.424 47.826 0.00 0.00 0.00 3.01
444 445 2.223745 TGTTTTCTACCGCCAAAGTCC 58.776 47.619 0.00 0.00 0.00 3.85
445 446 1.538512 GTTTTCTACCGCCAAAGTCCC 59.461 52.381 0.00 0.00 0.00 4.46
446 447 1.061546 TTTCTACCGCCAAAGTCCCT 58.938 50.000 0.00 0.00 0.00 4.20
447 448 0.323629 TTCTACCGCCAAAGTCCCTG 59.676 55.000 0.00 0.00 0.00 4.45
448 449 1.078426 CTACCGCCAAAGTCCCTGG 60.078 63.158 0.00 0.00 36.99 4.45
453 454 3.074281 CCAAAGTCCCTGGCGGTA 58.926 61.111 0.00 0.00 0.00 4.02
454 455 1.078426 CCAAAGTCCCTGGCGGTAG 60.078 63.158 0.00 0.00 0.00 3.18
455 456 1.078426 CAAAGTCCCTGGCGGTAGG 60.078 63.158 0.00 0.00 37.59 3.18
456 457 2.967946 AAAGTCCCTGGCGGTAGGC 61.968 63.158 0.00 0.00 44.11 3.93
457 458 3.925914 AAGTCCCTGGCGGTAGGCT 62.926 63.158 0.00 0.00 44.18 4.58
458 459 4.162690 GTCCCTGGCGGTAGGCTG 62.163 72.222 0.00 0.00 44.18 4.85
459 460 4.715130 TCCCTGGCGGTAGGCTGT 62.715 66.667 0.00 0.00 44.18 4.40
460 461 3.717294 CCCTGGCGGTAGGCTGTT 61.717 66.667 0.00 0.00 44.18 3.16
462 463 1.144057 CCTGGCGGTAGGCTGTTAG 59.856 63.158 0.00 0.00 44.18 2.34
464 465 0.179108 CTGGCGGTAGGCTGTTAGAC 60.179 60.000 0.00 0.00 44.18 2.59
466 467 1.143401 GCGGTAGGCTGTTAGACCC 59.857 63.158 0.00 0.00 39.11 4.46
468 469 2.025863 GCGGTAGGCTGTTAGACCCTA 61.026 57.143 0.00 0.00 39.11 3.53
471 472 2.743553 GTAGGCTGTTAGACCCTACCA 58.256 52.381 0.00 0.00 43.31 3.25
473 474 0.540454 GGCTGTTAGACCCTACCACC 59.460 60.000 0.00 0.00 0.00 4.61
474 475 1.272807 GCTGTTAGACCCTACCACCA 58.727 55.000 0.00 0.00 0.00 4.17
475 476 1.838077 GCTGTTAGACCCTACCACCAT 59.162 52.381 0.00 0.00 0.00 3.55
476 477 2.420129 GCTGTTAGACCCTACCACCATG 60.420 54.545 0.00 0.00 0.00 3.66
477 478 3.104512 CTGTTAGACCCTACCACCATGA 58.895 50.000 0.00 0.00 0.00 3.07
479 480 3.262405 TGTTAGACCCTACCACCATGAAC 59.738 47.826 0.00 0.00 0.00 3.18
480 481 2.344093 AGACCCTACCACCATGAACT 57.656 50.000 0.00 0.00 0.00 3.01
481 482 2.188817 AGACCCTACCACCATGAACTC 58.811 52.381 0.00 0.00 0.00 3.01
482 483 2.188817 GACCCTACCACCATGAACTCT 58.811 52.381 0.00 0.00 0.00 3.24
483 484 1.909302 ACCCTACCACCATGAACTCTG 59.091 52.381 0.00 0.00 0.00 3.35
484 485 1.210478 CCCTACCACCATGAACTCTGG 59.790 57.143 0.00 0.00 39.80 3.86
486 487 0.249120 TACCACCATGAACTCTGGCG 59.751 55.000 0.00 0.00 37.27 5.69
487 488 1.746615 CCACCATGAACTCTGGCGG 60.747 63.158 0.00 0.00 37.27 6.13
488 489 1.003355 CACCATGAACTCTGGCGGT 60.003 57.895 0.00 0.00 37.27 5.68
489 490 0.249120 CACCATGAACTCTGGCGGTA 59.751 55.000 0.00 0.00 37.27 4.02
490 491 0.537188 ACCATGAACTCTGGCGGTAG 59.463 55.000 0.00 0.00 37.27 3.18
491 492 0.811616 CCATGAACTCTGGCGGTAGC 60.812 60.000 0.00 0.00 44.18 3.58
501 502 4.390048 GCGGTAGCAAAAGGGTCA 57.610 55.556 0.00 0.00 44.35 4.02
502 503 2.171635 GCGGTAGCAAAAGGGTCAG 58.828 57.895 0.00 0.00 44.35 3.51
503 504 0.321298 GCGGTAGCAAAAGGGTCAGA 60.321 55.000 0.00 0.00 44.35 3.27
505 506 2.280628 CGGTAGCAAAAGGGTCAGATC 58.719 52.381 0.00 0.00 0.00 2.75
506 507 2.093447 CGGTAGCAAAAGGGTCAGATCT 60.093 50.000 0.00 0.00 0.00 2.75
508 509 3.055094 GGTAGCAAAAGGGTCAGATCTCA 60.055 47.826 0.00 0.00 0.00 3.27
509 510 3.795688 AGCAAAAGGGTCAGATCTCAA 57.204 42.857 0.00 0.00 0.00 3.02
510 511 4.104383 AGCAAAAGGGTCAGATCTCAAA 57.896 40.909 0.00 0.00 0.00 2.69
511 512 4.473444 AGCAAAAGGGTCAGATCTCAAAA 58.527 39.130 0.00 0.00 0.00 2.44
512 513 4.895297 AGCAAAAGGGTCAGATCTCAAAAA 59.105 37.500 0.00 0.00 0.00 1.94
543 544 9.231297 TCAAACTAAGGTCAAATCTTGAATAGG 57.769 33.333 0.00 0.00 42.15 2.57
544 545 9.014297 CAAACTAAGGTCAAATCTTGAATAGGT 57.986 33.333 0.00 0.00 42.15 3.08
545 546 9.588096 AAACTAAGGTCAAATCTTGAATAGGTT 57.412 29.630 0.00 0.00 42.15 3.50
546 547 9.588096 AACTAAGGTCAAATCTTGAATAGGTTT 57.412 29.630 0.00 0.00 42.15 3.27
547 548 9.232473 ACTAAGGTCAAATCTTGAATAGGTTTC 57.768 33.333 0.00 0.00 42.15 2.78
550 551 8.477419 AGGTCAAATCTTGAATAGGTTTCAAA 57.523 30.769 2.77 0.00 42.15 2.69
551 552 8.923270 AGGTCAAATCTTGAATAGGTTTCAAAA 58.077 29.630 2.77 0.00 42.15 2.44
552 553 9.541143 GGTCAAATCTTGAATAGGTTTCAAAAA 57.459 29.630 2.77 0.00 42.15 1.94
569 570 3.878160 AAAAAGGGTCAAAGCACGAAA 57.122 38.095 0.00 0.00 0.00 3.46
570 571 3.878160 AAAAGGGTCAAAGCACGAAAA 57.122 38.095 0.00 0.00 0.00 2.29
571 572 4.400529 AAAAGGGTCAAAGCACGAAAAT 57.599 36.364 0.00 0.00 0.00 1.82
574 575 3.716601 AGGGTCAAAGCACGAAAATTTG 58.283 40.909 0.00 0.00 35.68 2.32
576 577 2.220824 GGTCAAAGCACGAAAATTTGCC 59.779 45.455 0.00 0.00 39.75 4.52
577 578 2.220824 GTCAAAGCACGAAAATTTGCCC 59.779 45.455 0.00 0.00 39.75 5.36
593 6842 2.575993 CCCCAGAGCTCACTGTCG 59.424 66.667 17.77 0.00 36.30 4.35
731 6984 1.379916 CAGGTCCATGGCCACTTGA 59.620 57.895 22.33 1.11 0.00 3.02
733 6986 0.257039 AGGTCCATGGCCACTTGATC 59.743 55.000 22.33 5.21 0.00 2.92
746 7005 2.002586 ACTTGATCGTGGAAAGCATCG 58.997 47.619 0.00 0.00 0.00 3.84
834 7096 1.064758 TGGTAATAGTGCCTGCCTTGG 60.065 52.381 0.00 0.00 0.00 3.61
836 7098 2.565841 GTAATAGTGCCTGCCTTGGAG 58.434 52.381 0.00 0.00 0.00 3.86
840 7102 0.995024 AGTGCCTGCCTTGGAGTATT 59.005 50.000 0.00 0.00 0.00 1.89
841 7103 2.196595 AGTGCCTGCCTTGGAGTATTA 58.803 47.619 0.00 0.00 0.00 0.98
842 7104 2.780010 AGTGCCTGCCTTGGAGTATTAT 59.220 45.455 0.00 0.00 0.00 1.28
844 7106 1.882623 GCCTGCCTTGGAGTATTATGC 59.117 52.381 0.00 0.00 0.00 3.14
845 7107 2.749466 GCCTGCCTTGGAGTATTATGCA 60.749 50.000 0.00 0.00 0.00 3.96
846 7108 3.144506 CCTGCCTTGGAGTATTATGCAG 58.855 50.000 0.00 0.00 43.19 4.41
847 7109 3.181451 CCTGCCTTGGAGTATTATGCAGA 60.181 47.826 9.93 0.00 45.64 4.26
849 7111 5.052693 TGCCTTGGAGTATTATGCAGAAT 57.947 39.130 11.88 11.88 0.00 2.40
850 7112 5.065914 TGCCTTGGAGTATTATGCAGAATC 58.934 41.667 10.37 2.84 0.00 2.52
851 7113 4.457257 GCCTTGGAGTATTATGCAGAATCC 59.543 45.833 10.37 7.54 0.00 3.01
852 7114 5.747248 GCCTTGGAGTATTATGCAGAATCCT 60.747 44.000 10.37 4.03 0.00 3.24
855 7117 5.858381 TGGAGTATTATGCAGAATCCTGAC 58.142 41.667 10.37 3.19 43.02 3.51
867 7174 1.302907 ATCCTGACCTGAATTGGGCT 58.697 50.000 0.00 0.00 35.73 5.19
964 7471 4.610333 TGCTTCCTTCTCCAGTCTGTATA 58.390 43.478 0.00 0.00 0.00 1.47
1339 8013 5.394005 CCACCTCAACATGAACTCAACAAAA 60.394 40.000 0.00 0.00 0.00 2.44
1393 8067 0.534877 TCACAAACCGTGCTGATGCT 60.535 50.000 0.00 0.00 45.92 3.79
1461 8138 2.736144 TCCAGTAGCGTAAACACCAG 57.264 50.000 0.00 0.00 0.00 4.00
1673 8353 0.824109 TCTGGGTCTTGGCTCATACG 59.176 55.000 0.00 0.00 0.00 3.06
1688 8371 4.693283 CTCATACGGCATGGAAGTAGAAA 58.307 43.478 0.00 0.00 35.16 2.52
2110 8808 1.818060 CGGCATGATTGGGAGTTTGAA 59.182 47.619 0.00 0.00 0.00 2.69
2359 9057 0.390492 GGCATGGGGAATTGCTTAGC 59.610 55.000 0.00 0.00 38.88 3.09
2531 9236 5.165961 ACTAGTGGTCATGCTGTTGTTAT 57.834 39.130 0.00 0.00 0.00 1.89
2557 9263 4.320608 TTGGAGGAACAAATTCAAGTGC 57.679 40.909 0.00 0.00 36.46 4.40
2615 9327 3.010420 GGTGGAATTGTAGCCTTCAGAC 58.990 50.000 0.00 0.00 0.00 3.51
2647 9359 4.131596 TGGTTCGTGCTACTAAAAGCTTT 58.868 39.130 5.69 5.69 43.19 3.51
2770 9485 0.038166 AGAAGCAATTCAGGGCCGAA 59.962 50.000 12.04 12.04 0.00 4.30
2861 9576 7.275779 GTGATCACAGATTACTTGTGTACGAAT 59.724 37.037 21.07 0.00 35.31 3.34
2875 9590 8.549338 TTGTGTACGAATACATGTTAAATGGA 57.451 30.769 2.30 0.00 43.21 3.41
2910 9628 6.073548 GGTCATCTATTTAAGACGAGCAATGG 60.074 42.308 0.00 0.00 42.88 3.16
3151 9876 2.644798 AGGAACTGTGGGTTATCTTGCT 59.355 45.455 0.00 0.00 38.41 3.91
3379 10107 2.832733 TGATCCACGGTTACATGGTGTA 59.167 45.455 0.00 0.00 37.27 2.90
3474 10202 2.692557 CAACAATGGGTGAAGTTGTCCA 59.307 45.455 0.00 0.00 37.25 4.02
3475 10203 2.306847 ACAATGGGTGAAGTTGTCCAC 58.693 47.619 0.00 0.00 30.78 4.02
3640 10382 7.496591 TCTTAAAAATGTTGTAACGTGGAGAGT 59.503 33.333 0.00 0.00 0.00 3.24
3658 10401 6.447084 TGGAGAGTAAGGAATAAAAGGATGGT 59.553 38.462 0.00 0.00 0.00 3.55
3738 10554 1.832883 ATGGTAAGCCGTCATTGCAA 58.167 45.000 0.00 0.00 37.67 4.08
3741 10566 1.472480 GGTAAGCCGTCATTGCAACAT 59.528 47.619 0.00 0.00 0.00 2.71
3789 10621 0.689623 AGAGCCAGACTGGGAACTTG 59.310 55.000 23.09 0.00 38.19 3.16
3823 10669 2.289565 GCAGTGCAGGAATAGGTTACC 58.710 52.381 11.09 0.00 0.00 2.85
3861 10707 7.217906 AGGCAAGATACCAGCTATAGTTTAAC 58.782 38.462 0.84 0.00 0.00 2.01
3941 10792 6.777782 AGGAAGATGTCAGATCTGAAAGTTT 58.222 36.000 26.70 18.39 41.85 2.66
3942 10793 7.911651 AGGAAGATGTCAGATCTGAAAGTTTA 58.088 34.615 26.70 9.70 41.85 2.01
3952 10836 5.589050 AGATCTGAAAGTTTAATAACCGCCC 59.411 40.000 0.00 0.00 34.71 6.13
3975 10859 5.160641 CGGTATTTCCAAATTTCTGTGTGG 58.839 41.667 0.00 0.00 35.57 4.17
4035 10919 1.742324 TTCAATGTTGCGCTTGCCCA 61.742 50.000 9.73 0.00 38.03 5.36
4036 10920 1.300775 CAATGTTGCGCTTGCCCAA 60.301 52.632 9.73 0.00 38.03 4.12
4037 10921 1.005867 AATGTTGCGCTTGCCCAAG 60.006 52.632 9.73 3.70 41.24 3.61
4038 10922 1.747325 AATGTTGCGCTTGCCCAAGT 61.747 50.000 9.73 0.00 40.45 3.16
4039 10923 0.893270 ATGTTGCGCTTGCCCAAGTA 60.893 50.000 9.73 0.00 40.45 2.24
4078 11806 3.434319 CCACATGGTGAGTGCGGC 61.434 66.667 0.00 0.00 35.23 6.53
4143 11871 7.121168 CACTACATTCTCCAAAATAGAAGCCAA 59.879 37.037 0.00 0.00 36.46 4.52
4152 11880 1.027357 ATAGAAGCCAATTGCCAGCG 58.973 50.000 0.00 0.00 42.71 5.18
4222 11950 8.276325 CAGACACAAGATAAAAAGTGACTACAC 58.724 37.037 0.00 0.00 46.24 2.90
4236 11964 5.839621 GTGACTACACTTCTTCAGGTTGTA 58.160 41.667 0.00 0.00 42.99 2.41
4240 11968 7.286087 TGACTACACTTCTTCAGGTTGTACTTA 59.714 37.037 0.00 0.00 0.00 2.24
4250 11978 6.560003 TCAGGTTGTACTTACCATGATGAT 57.440 37.500 16.68 0.00 38.16 2.45
4266 11994 7.038445 ACCATGATGATGACCCAAAAATTAACA 60.038 33.333 0.00 0.00 0.00 2.41
4276 12004 6.463360 ACCCAAAAATTAACACCTAGCATTG 58.537 36.000 0.00 0.00 0.00 2.82
4302 12031 1.616994 CCCAGAACCAATCCCTGAACC 60.617 57.143 0.00 0.00 0.00 3.62
4346 12075 1.019278 TTGGATTTGCGGCTCTCGAC 61.019 55.000 0.00 0.00 42.43 4.20
4356 12085 1.803519 GCTCTCGACCGTGAAGCTG 60.804 63.158 0.00 0.00 0.00 4.24
4371 12100 2.266055 CTGAACCGGCAGAGTCCC 59.734 66.667 0.00 0.00 38.14 4.46
4416 12145 0.894835 TGTTACAGCCATCGAGCTCA 59.105 50.000 15.40 1.08 42.61 4.26
4446 12175 1.960689 CCGTCCACCCTGAACAATTTT 59.039 47.619 0.00 0.00 0.00 1.82
4447 12176 2.030274 CCGTCCACCCTGAACAATTTTC 60.030 50.000 0.00 0.00 0.00 2.29
4448 12177 2.884639 CGTCCACCCTGAACAATTTTCT 59.115 45.455 3.25 0.00 0.00 2.52
4455 12184 6.153340 CCACCCTGAACAATTTTCTGATGTAT 59.847 38.462 8.03 0.00 0.00 2.29
4485 12214 6.092122 TCAGTTTTGTCAGCATCTAAATACCG 59.908 38.462 0.00 0.00 0.00 4.02
4489 12218 0.512952 CAGCATCTAAATACCGCCGC 59.487 55.000 0.00 0.00 0.00 6.53
4517 12246 1.432270 GCGACATTCCAGCTACAGCC 61.432 60.000 0.00 0.00 43.38 4.85
4533 12262 0.827925 AGCCCTCGAGTGTCTGTTCA 60.828 55.000 12.31 0.00 0.00 3.18
4540 12269 1.667177 CGAGTGTCTGTTCATCGCACT 60.667 52.381 0.00 0.00 42.29 4.40
4541 12270 2.414161 CGAGTGTCTGTTCATCGCACTA 60.414 50.000 0.00 0.00 40.06 2.74
4542 12271 3.732169 CGAGTGTCTGTTCATCGCACTAT 60.732 47.826 0.00 0.00 40.06 2.12
4543 12272 4.177026 GAGTGTCTGTTCATCGCACTATT 58.823 43.478 0.00 0.00 40.06 1.73
4544 12273 3.928992 AGTGTCTGTTCATCGCACTATTG 59.071 43.478 0.00 0.00 38.46 1.90
4545 12274 2.672874 TGTCTGTTCATCGCACTATTGC 59.327 45.455 0.00 0.00 46.21 3.56
4567 12296 7.451501 TGCATGAAATCAGAGAAATACAACA 57.548 32.000 0.00 0.00 0.00 3.33
4579 12308 6.002062 AGAAATACAACAAAAAGGAGAGCG 57.998 37.500 0.00 0.00 0.00 5.03
4580 12309 3.831715 ATACAACAAAAAGGAGAGCGC 57.168 42.857 0.00 0.00 0.00 5.92
4586 12315 1.507141 AAAAAGGAGAGCGCGTGTGG 61.507 55.000 8.43 0.00 0.00 4.17
4587 12316 3.883744 AAAGGAGAGCGCGTGTGGG 62.884 63.158 8.43 0.00 0.00 4.61
4590 12319 4.373116 GAGAGCGCGTGTGGGGAA 62.373 66.667 8.43 0.00 0.00 3.97
4591 12320 4.681978 AGAGCGCGTGTGGGGAAC 62.682 66.667 8.43 0.00 0.00 3.62
4592 12321 4.980805 GAGCGCGTGTGGGGAACA 62.981 66.667 8.43 0.00 36.04 3.18
4604 12333 3.662759 TGGGGAACACAAAGTTTCTCT 57.337 42.857 0.00 0.00 41.51 3.10
4605 12334 3.287222 TGGGGAACACAAAGTTTCTCTG 58.713 45.455 0.00 0.00 41.51 3.35
4606 12335 3.053991 TGGGGAACACAAAGTTTCTCTGA 60.054 43.478 0.00 0.00 41.51 3.27
4607 12336 3.951680 GGGGAACACAAAGTTTCTCTGAA 59.048 43.478 0.00 0.00 41.51 3.02
4608 12337 4.202020 GGGGAACACAAAGTTTCTCTGAAC 60.202 45.833 0.00 0.00 41.51 3.18
4609 12338 4.202020 GGGAACACAAAGTTTCTCTGAACC 60.202 45.833 0.00 0.00 41.51 3.62
4610 12339 4.398044 GGAACACAAAGTTTCTCTGAACCA 59.602 41.667 0.00 0.00 41.51 3.67
4611 12340 4.965119 ACACAAAGTTTCTCTGAACCAC 57.035 40.909 0.00 0.00 0.00 4.16
4612 12341 3.694566 ACACAAAGTTTCTCTGAACCACC 59.305 43.478 0.00 0.00 0.00 4.61
4613 12342 3.694072 CACAAAGTTTCTCTGAACCACCA 59.306 43.478 0.00 0.00 0.00 4.17
4614 12343 4.157656 CACAAAGTTTCTCTGAACCACCAA 59.842 41.667 0.00 0.00 0.00 3.67
4615 12344 4.157840 ACAAAGTTTCTCTGAACCACCAAC 59.842 41.667 0.00 0.00 0.00 3.77
4616 12345 2.932261 AGTTTCTCTGAACCACCAACC 58.068 47.619 0.00 0.00 0.00 3.77
4617 12346 2.509964 AGTTTCTCTGAACCACCAACCT 59.490 45.455 0.00 0.00 0.00 3.50
4618 12347 3.053619 AGTTTCTCTGAACCACCAACCTT 60.054 43.478 0.00 0.00 0.00 3.50
4619 12348 3.662759 TTCTCTGAACCACCAACCTTT 57.337 42.857 0.00 0.00 0.00 3.11
4620 12349 3.662759 TCTCTGAACCACCAACCTTTT 57.337 42.857 0.00 0.00 0.00 2.27
4621 12350 4.781775 TCTCTGAACCACCAACCTTTTA 57.218 40.909 0.00 0.00 0.00 1.52
4622 12351 5.319043 TCTCTGAACCACCAACCTTTTAT 57.681 39.130 0.00 0.00 0.00 1.40
4623 12352 5.313712 TCTCTGAACCACCAACCTTTTATC 58.686 41.667 0.00 0.00 0.00 1.75
4624 12353 5.073144 TCTCTGAACCACCAACCTTTTATCT 59.927 40.000 0.00 0.00 0.00 1.98
4625 12354 5.313712 TCTGAACCACCAACCTTTTATCTC 58.686 41.667 0.00 0.00 0.00 2.75
4626 12355 5.073144 TCTGAACCACCAACCTTTTATCTCT 59.927 40.000 0.00 0.00 0.00 3.10
4627 12356 5.070001 TGAACCACCAACCTTTTATCTCTG 58.930 41.667 0.00 0.00 0.00 3.35
4628 12357 4.993705 ACCACCAACCTTTTATCTCTGA 57.006 40.909 0.00 0.00 0.00 3.27
4629 12358 5.319043 ACCACCAACCTTTTATCTCTGAA 57.681 39.130 0.00 0.00 0.00 3.02
4630 12359 5.316987 ACCACCAACCTTTTATCTCTGAAG 58.683 41.667 0.00 0.00 0.00 3.02
4631 12360 5.163088 ACCACCAACCTTTTATCTCTGAAGT 60.163 40.000 0.00 0.00 0.00 3.01
4632 12361 6.043938 ACCACCAACCTTTTATCTCTGAAGTA 59.956 38.462 0.00 0.00 0.00 2.24
4633 12362 6.940298 CCACCAACCTTTTATCTCTGAAGTAA 59.060 38.462 0.00 0.00 0.00 2.24
4634 12363 7.119846 CCACCAACCTTTTATCTCTGAAGTAAG 59.880 40.741 0.00 0.00 0.00 2.34
4635 12364 7.119846 CACCAACCTTTTATCTCTGAAGTAAGG 59.880 40.741 0.00 0.00 37.33 2.69
4636 12365 7.168905 CCAACCTTTTATCTCTGAAGTAAGGT 58.831 38.462 0.00 0.00 44.12 3.50
4637 12366 7.119846 CCAACCTTTTATCTCTGAAGTAAGGTG 59.880 40.741 0.00 0.00 42.10 4.00
4638 12367 7.317722 ACCTTTTATCTCTGAAGTAAGGTGT 57.682 36.000 0.00 0.00 41.55 4.16
4639 12368 7.162082 ACCTTTTATCTCTGAAGTAAGGTGTG 58.838 38.462 0.00 0.00 41.55 3.82
4640 12369 7.016268 ACCTTTTATCTCTGAAGTAAGGTGTGA 59.984 37.037 0.00 0.00 41.55 3.58
4641 12370 7.547370 CCTTTTATCTCTGAAGTAAGGTGTGAG 59.453 40.741 0.00 0.00 0.00 3.51
4642 12371 7.776618 TTTATCTCTGAAGTAAGGTGTGAGA 57.223 36.000 0.00 0.00 34.29 3.27
4643 12372 7.962995 TTATCTCTGAAGTAAGGTGTGAGAT 57.037 36.000 0.00 0.00 41.08 2.75
4644 12373 5.651387 TCTCTGAAGTAAGGTGTGAGATG 57.349 43.478 0.00 0.00 0.00 2.90
4645 12374 4.464244 TCTCTGAAGTAAGGTGTGAGATGG 59.536 45.833 0.00 0.00 0.00 3.51
4646 12375 3.055819 TCTGAAGTAAGGTGTGAGATGGC 60.056 47.826 0.00 0.00 0.00 4.40
4647 12376 2.637382 TGAAGTAAGGTGTGAGATGGCA 59.363 45.455 0.00 0.00 0.00 4.92
4648 12377 3.265791 GAAGTAAGGTGTGAGATGGCAG 58.734 50.000 0.00 0.00 0.00 4.85
4649 12378 2.260822 AGTAAGGTGTGAGATGGCAGT 58.739 47.619 0.00 0.00 0.00 4.40
4650 12379 2.639839 AGTAAGGTGTGAGATGGCAGTT 59.360 45.455 0.00 0.00 0.00 3.16
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.008628 GGAATGCTACAATTGCGAATAATATGC 59.991 37.037 5.05 0.00 0.00 3.14
2 3 7.362920 GGGGAATGCTACAATTGCGAATAATAT 60.363 37.037 5.05 0.00 0.00 1.28
7 8 2.362077 GGGGAATGCTACAATTGCGAAT 59.638 45.455 5.05 0.00 0.00 3.34
10 11 1.066002 CTGGGGAATGCTACAATTGCG 59.934 52.381 5.05 0.00 0.00 4.85
12 13 2.360165 GCTCTGGGGAATGCTACAATTG 59.640 50.000 3.24 3.24 0.00 2.32
14 15 1.849039 AGCTCTGGGGAATGCTACAAT 59.151 47.619 0.00 0.00 33.64 2.71
15 16 1.065199 CAGCTCTGGGGAATGCTACAA 60.065 52.381 0.00 0.00 34.10 2.41
17 18 0.179034 CCAGCTCTGGGGAATGCTAC 60.179 60.000 8.03 0.00 46.81 3.58
19 20 3.004951 CCAGCTCTGGGGAATGCT 58.995 61.111 8.03 0.00 46.81 3.79
29 30 1.070758 ACGTTCATGTCAACCAGCTCT 59.929 47.619 0.00 0.00 0.00 4.09
30 31 1.195448 CACGTTCATGTCAACCAGCTC 59.805 52.381 0.00 0.00 0.00 4.09
32 33 0.944386 ACACGTTCATGTCAACCAGC 59.056 50.000 0.00 0.00 0.00 4.85
33 34 3.127589 TGTACACGTTCATGTCAACCAG 58.872 45.455 0.00 0.00 33.85 4.00
34 35 3.180891 TGTACACGTTCATGTCAACCA 57.819 42.857 0.00 0.00 33.85 3.67
35 36 4.742438 AATGTACACGTTCATGTCAACC 57.258 40.909 0.00 0.00 33.85 3.77
36 37 5.107259 TGCTAATGTACACGTTCATGTCAAC 60.107 40.000 0.00 0.00 33.85 3.18
37 38 4.991687 TGCTAATGTACACGTTCATGTCAA 59.008 37.500 0.00 0.00 33.85 3.18
38 39 4.561105 TGCTAATGTACACGTTCATGTCA 58.439 39.130 0.00 0.00 33.85 3.58
39 40 5.524511 TTGCTAATGTACACGTTCATGTC 57.475 39.130 0.00 0.00 33.85 3.06
40 41 6.494893 AATTGCTAATGTACACGTTCATGT 57.505 33.333 0.00 0.00 36.56 3.21
41 42 7.795431 AAAATTGCTAATGTACACGTTCATG 57.205 32.000 0.00 0.00 0.00 3.07
65 66 5.128499 ACAATGACCTCAACCAATCAACAAA 59.872 36.000 0.00 0.00 0.00 2.83
67 68 4.214310 ACAATGACCTCAACCAATCAACA 58.786 39.130 0.00 0.00 0.00 3.33
69 70 4.892345 TCAACAATGACCTCAACCAATCAA 59.108 37.500 0.00 0.00 0.00 2.57
70 71 4.468713 TCAACAATGACCTCAACCAATCA 58.531 39.130 0.00 0.00 0.00 2.57
83 84 3.068024 GCCAAAAGGTCAGTCAACAATGA 59.932 43.478 0.00 0.00 0.00 2.57
85 86 3.030291 TGCCAAAAGGTCAGTCAACAAT 58.970 40.909 0.00 0.00 0.00 2.71
123 124 5.450550 GGGAGTGCTAAGCCACAAATATTTC 60.451 44.000 0.00 0.00 38.18 2.17
124 125 4.402474 GGGAGTGCTAAGCCACAAATATTT 59.598 41.667 0.00 0.00 38.18 1.40
125 126 3.954258 GGGAGTGCTAAGCCACAAATATT 59.046 43.478 0.00 0.00 38.18 1.28
126 127 3.555966 GGGAGTGCTAAGCCACAAATAT 58.444 45.455 0.00 0.00 38.18 1.28
127 128 2.356741 GGGGAGTGCTAAGCCACAAATA 60.357 50.000 0.00 0.00 38.18 1.40
128 129 1.616994 GGGGAGTGCTAAGCCACAAAT 60.617 52.381 0.00 0.00 38.18 2.32
131 132 1.841302 CTGGGGAGTGCTAAGCCACA 61.841 60.000 0.00 0.00 38.18 4.17
133 134 1.229496 TCTGGGGAGTGCTAAGCCA 60.229 57.895 0.00 0.00 0.00 4.75
134 135 1.524482 CTCTGGGGAGTGCTAAGCC 59.476 63.158 0.00 0.00 35.03 4.35
135 136 1.153269 GCTCTGGGGAGTGCTAAGC 60.153 63.158 0.00 0.00 41.38 3.09
136 137 0.177604 CAGCTCTGGGGAGTGCTAAG 59.822 60.000 0.00 0.00 41.38 2.18
137 138 1.267574 CCAGCTCTGGGGAGTGCTAA 61.268 60.000 8.03 0.00 46.81 3.09
138 139 1.687146 CCAGCTCTGGGGAGTGCTA 60.687 63.158 8.03 0.00 46.81 3.49
139 140 3.007920 CCAGCTCTGGGGAGTGCT 61.008 66.667 8.03 0.00 46.81 4.40
148 149 7.814107 TCAAAACATAAAATTTAGCCAGCTCTG 59.186 33.333 0.00 0.00 0.00 3.35
149 150 7.814587 GTCAAAACATAAAATTTAGCCAGCTCT 59.185 33.333 0.00 0.00 0.00 4.09
150 151 7.063426 GGTCAAAACATAAAATTTAGCCAGCTC 59.937 37.037 0.00 0.00 0.00 4.09
151 152 6.873605 GGTCAAAACATAAAATTTAGCCAGCT 59.126 34.615 0.00 0.00 0.00 4.24
152 153 6.092122 GGGTCAAAACATAAAATTTAGCCAGC 59.908 38.462 0.00 0.00 0.00 4.85
154 155 7.309770 AGGGTCAAAACATAAAATTTAGCCA 57.690 32.000 0.00 0.00 0.00 4.75
155 156 8.615878 AAAGGGTCAAAACATAAAATTTAGCC 57.384 30.769 0.00 0.00 0.00 3.93
159 160 9.898152 TCAGAAAAGGGTCAAAACATAAAATTT 57.102 25.926 0.00 0.00 0.00 1.82
160 161 9.898152 TTCAGAAAAGGGTCAAAACATAAAATT 57.102 25.926 0.00 0.00 0.00 1.82
161 162 9.898152 TTTCAGAAAAGGGTCAAAACATAAAAT 57.102 25.926 0.00 0.00 0.00 1.82
162 163 9.157104 GTTTCAGAAAAGGGTCAAAACATAAAA 57.843 29.630 0.00 0.00 31.18 1.52
163 164 7.766738 GGTTTCAGAAAAGGGTCAAAACATAAA 59.233 33.333 0.00 0.00 31.85 1.40
165 166 6.609616 AGGTTTCAGAAAAGGGTCAAAACATA 59.390 34.615 0.00 0.00 31.85 2.29
166 167 5.425217 AGGTTTCAGAAAAGGGTCAAAACAT 59.575 36.000 0.00 0.00 31.85 2.71
167 168 4.775253 AGGTTTCAGAAAAGGGTCAAAACA 59.225 37.500 0.00 0.00 31.85 2.83
169 170 7.343316 TGAATAGGTTTCAGAAAAGGGTCAAAA 59.657 33.333 0.00 0.00 0.00 2.44
170 171 6.836527 TGAATAGGTTTCAGAAAAGGGTCAAA 59.163 34.615 0.00 0.00 0.00 2.69
171 172 6.369629 TGAATAGGTTTCAGAAAAGGGTCAA 58.630 36.000 0.00 0.00 0.00 3.18
173 174 6.715264 TCTTGAATAGGTTTCAGAAAAGGGTC 59.285 38.462 0.00 0.00 0.00 4.46
174 175 6.610830 TCTTGAATAGGTTTCAGAAAAGGGT 58.389 36.000 0.00 0.00 0.00 4.34
175 176 7.709149 ATCTTGAATAGGTTTCAGAAAAGGG 57.291 36.000 0.00 0.00 0.00 3.95
176 177 9.415544 CAAATCTTGAATAGGTTTCAGAAAAGG 57.584 33.333 0.00 0.00 34.94 3.11
179 180 8.576442 GGTCAAATCTTGAATAGGTTTCAGAAA 58.424 33.333 0.00 0.00 42.15 2.52
180 181 7.176690 GGGTCAAATCTTGAATAGGTTTCAGAA 59.823 37.037 0.00 0.00 42.15 3.02
181 182 6.659242 GGGTCAAATCTTGAATAGGTTTCAGA 59.341 38.462 0.00 0.00 42.15 3.27
182 183 6.660949 AGGGTCAAATCTTGAATAGGTTTCAG 59.339 38.462 0.00 0.00 42.15 3.02
183 184 6.552008 AGGGTCAAATCTTGAATAGGTTTCA 58.448 36.000 0.00 0.00 42.15 2.69
184 185 7.829706 ACTAGGGTCAAATCTTGAATAGGTTTC 59.170 37.037 0.00 0.00 42.15 2.78
185 186 7.699878 ACTAGGGTCAAATCTTGAATAGGTTT 58.300 34.615 0.00 0.00 42.15 3.27
186 187 7.272144 ACTAGGGTCAAATCTTGAATAGGTT 57.728 36.000 0.00 0.00 42.15 3.50
189 190 8.792830 TCAAACTAGGGTCAAATCTTGAATAG 57.207 34.615 0.00 0.00 42.15 1.73
190 191 9.753674 ATTCAAACTAGGGTCAAATCTTGAATA 57.246 29.630 5.21 0.00 42.15 1.75
191 192 8.655935 ATTCAAACTAGGGTCAAATCTTGAAT 57.344 30.769 0.00 0.00 42.15 2.57
192 193 8.477419 AATTCAAACTAGGGTCAAATCTTGAA 57.523 30.769 0.00 0.00 42.15 2.69
193 194 7.944554 AGAATTCAAACTAGGGTCAAATCTTGA 59.055 33.333 8.44 0.00 37.33 3.02
196 197 8.712228 AAAGAATTCAAACTAGGGTCAAATCT 57.288 30.769 8.44 0.00 0.00 2.40
197 198 9.764363 AAAAAGAATTCAAACTAGGGTCAAATC 57.236 29.630 8.44 0.00 0.00 2.17
198 199 9.546428 CAAAAAGAATTCAAACTAGGGTCAAAT 57.454 29.630 8.44 0.00 0.00 2.32
202 203 8.166422 TCTCAAAAAGAATTCAAACTAGGGTC 57.834 34.615 8.44 0.00 0.00 4.46
203 204 8.712228 ATCTCAAAAAGAATTCAAACTAGGGT 57.288 30.769 8.44 0.00 37.61 4.34
204 205 9.987272 AAATCTCAAAAAGAATTCAAACTAGGG 57.013 29.630 8.44 0.00 37.61 3.53
219 220 9.260002 GGTAGCAAAAAGATCAAATCTCAAAAA 57.740 29.630 0.00 0.00 39.08 1.94
220 221 7.594758 CGGTAGCAAAAAGATCAAATCTCAAAA 59.405 33.333 0.00 0.00 39.08 2.44
221 222 7.083858 CGGTAGCAAAAAGATCAAATCTCAAA 58.916 34.615 0.00 0.00 39.08 2.69
222 223 6.611381 CGGTAGCAAAAAGATCAAATCTCAA 58.389 36.000 0.00 0.00 39.08 3.02
223 224 5.391950 GCGGTAGCAAAAAGATCAAATCTCA 60.392 40.000 0.00 0.00 44.35 3.27
224 225 5.030936 GCGGTAGCAAAAAGATCAAATCTC 58.969 41.667 0.00 0.00 44.35 2.75
225 226 4.986622 GCGGTAGCAAAAAGATCAAATCT 58.013 39.130 0.00 0.00 44.35 2.40
241 242 2.514592 CATGGTGCCTGGCGGTAG 60.515 66.667 14.98 0.00 0.00 3.18
248 249 1.452651 CCTACTGCCATGGTGCCTG 60.453 63.158 14.67 3.42 0.00 4.85
249 250 2.683465 CCCTACTGCCATGGTGCCT 61.683 63.158 14.67 0.00 0.00 4.75
250 251 1.632018 TACCCTACTGCCATGGTGCC 61.632 60.000 14.67 0.00 32.27 5.01
251 252 0.474184 ATACCCTACTGCCATGGTGC 59.526 55.000 14.67 0.00 32.27 5.01
252 253 1.768275 TCATACCCTACTGCCATGGTG 59.232 52.381 14.67 9.43 32.27 4.17
254 255 1.768275 TGTCATACCCTACTGCCATGG 59.232 52.381 7.63 7.63 0.00 3.66
256 257 1.417890 GCTGTCATACCCTACTGCCAT 59.582 52.381 0.00 0.00 35.31 4.40
257 258 0.830648 GCTGTCATACCCTACTGCCA 59.169 55.000 0.00 0.00 35.31 4.92
258 259 3.688553 GCTGTCATACCCTACTGCC 57.311 57.895 0.00 0.00 35.31 4.85
259 260 1.123928 AGGCTGTCATACCCTACTGC 58.876 55.000 0.00 0.00 39.15 4.40
260 261 2.628657 GGTAGGCTGTCATACCCTACTG 59.371 54.545 17.28 0.00 46.54 2.74
261 262 2.752154 CGGTAGGCTGTCATACCCTACT 60.752 54.545 17.28 0.00 46.54 2.57
262 263 1.612463 CGGTAGGCTGTCATACCCTAC 59.388 57.143 0.00 12.65 46.60 3.18
263 264 1.991121 CGGTAGGCTGTCATACCCTA 58.009 55.000 0.00 0.00 38.60 3.53
264 265 1.400530 GCGGTAGGCTGTCATACCCT 61.401 60.000 0.00 0.00 38.60 4.34
265 266 1.069258 GCGGTAGGCTGTCATACCC 59.931 63.158 0.00 0.00 38.60 3.69
266 267 1.299926 CGCGGTAGGCTGTCATACC 60.300 63.158 0.00 0.00 40.44 2.73
267 268 0.101759 TTCGCGGTAGGCTGTCATAC 59.898 55.000 6.13 0.00 40.44 2.39
268 269 0.384309 CTTCGCGGTAGGCTGTCATA 59.616 55.000 6.13 0.00 40.44 2.15
269 270 1.141881 CTTCGCGGTAGGCTGTCAT 59.858 57.895 6.13 0.00 40.44 3.06
270 271 2.571757 CTTCGCGGTAGGCTGTCA 59.428 61.111 6.13 0.00 40.44 3.58
271 272 2.202756 CCTTCGCGGTAGGCTGTC 60.203 66.667 6.13 0.00 40.44 3.51
272 273 2.995574 ACCTTCGCGGTAGGCTGT 60.996 61.111 22.72 6.15 46.73 4.40
283 284 3.072468 TACCGCCAGGGACCTTCG 61.072 66.667 0.00 0.00 43.47 3.79
284 285 2.732619 CCTACCGCCAGGGACCTTC 61.733 68.421 0.00 0.00 43.47 3.46
291 292 3.344137 ATGCAACCCTACCGCCAGG 62.344 63.158 0.00 0.00 45.13 4.45
292 293 2.114670 CATGCAACCCTACCGCCAG 61.115 63.158 0.00 0.00 0.00 4.85
293 294 2.045438 CATGCAACCCTACCGCCA 60.045 61.111 0.00 0.00 0.00 5.69
295 296 3.518068 GGCATGCAACCCTACCGC 61.518 66.667 21.36 0.00 0.00 5.68
302 303 3.518068 GCGGTAGGGCATGCAACC 61.518 66.667 21.36 20.81 0.00 3.77
311 312 0.963856 GGAGGTTTTTGGCGGTAGGG 60.964 60.000 0.00 0.00 0.00 3.53
312 313 0.037734 AGGAGGTTTTTGGCGGTAGG 59.962 55.000 0.00 0.00 0.00 3.18
313 314 2.773993 TAGGAGGTTTTTGGCGGTAG 57.226 50.000 0.00 0.00 0.00 3.18
314 315 2.372837 ACTTAGGAGGTTTTTGGCGGTA 59.627 45.455 0.00 0.00 0.00 4.02
315 316 1.144298 ACTTAGGAGGTTTTTGGCGGT 59.856 47.619 0.00 0.00 0.00 5.68
316 317 1.905637 ACTTAGGAGGTTTTTGGCGG 58.094 50.000 0.00 0.00 0.00 6.13
317 318 4.698304 TCAATACTTAGGAGGTTTTTGGCG 59.302 41.667 0.00 0.00 0.00 5.69
318 319 6.015772 TGTTCAATACTTAGGAGGTTTTTGGC 60.016 38.462 0.00 0.00 0.00 4.52
319 320 7.013846 TGTGTTCAATACTTAGGAGGTTTTTGG 59.986 37.037 0.00 0.00 0.00 3.28
322 323 7.228706 CACTGTGTTCAATACTTAGGAGGTTTT 59.771 37.037 0.00 0.00 0.00 2.43
323 324 6.710744 CACTGTGTTCAATACTTAGGAGGTTT 59.289 38.462 0.00 0.00 0.00 3.27
326 327 4.631813 GCACTGTGTTCAATACTTAGGAGG 59.368 45.833 9.86 0.00 0.00 4.30
328 329 4.242475 CGCACTGTGTTCAATACTTAGGA 58.758 43.478 9.86 0.00 0.00 2.94
329 330 3.994392 ACGCACTGTGTTCAATACTTAGG 59.006 43.478 9.86 0.00 0.00 2.69
330 331 4.946255 CACGCACTGTGTTCAATACTTAG 58.054 43.478 9.86 0.00 43.88 2.18
332 333 3.878086 CACGCACTGTGTTCAATACTT 57.122 42.857 9.86 0.00 43.88 2.24
343 344 1.792118 TAGACACGAGCACGCACTGT 61.792 55.000 2.62 0.12 43.96 3.55
344 345 1.081442 TAGACACGAGCACGCACTG 60.081 57.895 2.62 0.00 43.96 3.66
345 346 1.081376 GTAGACACGAGCACGCACT 60.081 57.895 2.62 3.37 43.96 4.40
346 347 1.081376 AGTAGACACGAGCACGCAC 60.081 57.895 2.62 0.00 43.96 5.34
347 348 1.081442 CAGTAGACACGAGCACGCA 60.081 57.895 2.62 0.00 43.96 5.24
348 349 2.437343 GCAGTAGACACGAGCACGC 61.437 63.158 2.62 0.00 43.96 5.34
350 351 0.319555 TTGGCAGTAGACACGAGCAC 60.320 55.000 0.00 0.00 33.78 4.40
351 352 0.038251 CTTGGCAGTAGACACGAGCA 60.038 55.000 0.00 0.00 33.78 4.26
352 353 1.355066 GCTTGGCAGTAGACACGAGC 61.355 60.000 0.00 0.00 27.28 5.03
353 354 0.038251 TGCTTGGCAGTAGACACGAG 60.038 55.000 0.00 0.00 33.32 4.18
355 356 1.002366 GATGCTTGGCAGTAGACACG 58.998 55.000 0.00 0.00 43.65 4.49
356 357 2.393271 AGATGCTTGGCAGTAGACAC 57.607 50.000 0.00 0.00 43.65 3.67
357 358 2.616256 CCAAGATGCTTGGCAGTAGACA 60.616 50.000 12.75 0.00 43.65 3.41
358 359 2.012673 CCAAGATGCTTGGCAGTAGAC 58.987 52.381 12.75 0.00 43.65 2.59
359 360 2.408271 CCAAGATGCTTGGCAGTAGA 57.592 50.000 12.75 0.00 43.65 2.59
366 367 1.097547 CCTACCGCCAAGATGCTTGG 61.098 60.000 19.28 19.28 42.37 3.61
368 369 1.224592 CCCTACCGCCAAGATGCTT 59.775 57.895 0.00 0.00 0.00 3.91
369 370 1.562672 AACCCTACCGCCAAGATGCT 61.563 55.000 0.00 0.00 0.00 3.79
372 373 0.035439 CACAACCCTACCGCCAAGAT 60.035 55.000 0.00 0.00 0.00 2.40
373 374 1.373435 CACAACCCTACCGCCAAGA 59.627 57.895 0.00 0.00 0.00 3.02
374 375 2.332654 GCACAACCCTACCGCCAAG 61.333 63.158 0.00 0.00 0.00 3.61
377 378 2.746277 CTGCACAACCCTACCGCC 60.746 66.667 0.00 0.00 0.00 6.13
379 380 0.892755 TAGACTGCACAACCCTACCG 59.107 55.000 0.00 0.00 0.00 4.02
380 381 1.066358 GGTAGACTGCACAACCCTACC 60.066 57.143 0.00 0.00 41.49 3.18
381 382 1.403780 CGGTAGACTGCACAACCCTAC 60.404 57.143 0.00 0.00 0.00 3.18
382 383 0.892755 CGGTAGACTGCACAACCCTA 59.107 55.000 0.00 0.00 0.00 3.53
383 384 1.671742 CGGTAGACTGCACAACCCT 59.328 57.895 0.00 0.00 0.00 4.34
384 385 4.278956 CGGTAGACTGCACAACCC 57.721 61.111 0.00 0.00 0.00 4.11
392 393 4.514577 CGGGCTGGCGGTAGACTG 62.515 72.222 0.00 0.00 0.00 3.51
408 409 3.261951 CATCGCTACCGCCAACCG 61.262 66.667 0.00 0.00 0.00 4.44
409 410 1.303091 AAACATCGCTACCGCCAACC 61.303 55.000 0.00 0.00 0.00 3.77
410 411 0.519961 AAAACATCGCTACCGCCAAC 59.480 50.000 0.00 0.00 0.00 3.77
411 412 0.800012 GAAAACATCGCTACCGCCAA 59.200 50.000 0.00 0.00 0.00 4.52
412 413 0.036765 AGAAAACATCGCTACCGCCA 60.037 50.000 0.00 0.00 0.00 5.69
413 414 1.591619 GTAGAAAACATCGCTACCGCC 59.408 52.381 0.00 0.00 0.00 6.13
414 415 1.591619 GGTAGAAAACATCGCTACCGC 59.408 52.381 0.00 0.00 43.16 5.68
416 417 1.591619 GCGGTAGAAAACATCGCTACC 59.408 52.381 0.00 0.00 46.76 3.18
417 418 1.591619 GGCGGTAGAAAACATCGCTAC 59.408 52.381 0.00 0.00 44.88 3.58
419 420 0.036765 TGGCGGTAGAAAACATCGCT 60.037 50.000 0.00 0.00 44.88 4.93
420 421 0.800012 TTGGCGGTAGAAAACATCGC 59.200 50.000 0.00 0.00 44.80 4.58
422 423 3.119955 GGACTTTGGCGGTAGAAAACATC 60.120 47.826 0.00 0.00 0.00 3.06
423 424 2.817844 GGACTTTGGCGGTAGAAAACAT 59.182 45.455 0.00 0.00 0.00 2.71
424 425 2.223745 GGACTTTGGCGGTAGAAAACA 58.776 47.619 0.00 0.00 0.00 2.83
425 426 1.538512 GGGACTTTGGCGGTAGAAAAC 59.461 52.381 0.00 0.00 0.00 2.43
426 427 1.422402 AGGGACTTTGGCGGTAGAAAA 59.578 47.619 0.00 0.00 27.25 2.29
427 428 1.061546 AGGGACTTTGGCGGTAGAAA 58.938 50.000 0.00 0.00 27.25 2.52
428 429 0.323629 CAGGGACTTTGGCGGTAGAA 59.676 55.000 0.00 0.00 34.60 2.10
430 431 1.078426 CCAGGGACTTTGGCGGTAG 60.078 63.158 0.00 0.00 34.60 3.18
431 432 3.074281 CCAGGGACTTTGGCGGTA 58.926 61.111 0.00 0.00 34.60 4.02
436 437 1.078426 CTACCGCCAGGGACTTTGG 60.078 63.158 0.00 0.00 43.47 3.28
437 438 1.078426 CCTACCGCCAGGGACTTTG 60.078 63.158 0.00 0.00 43.47 2.77
438 439 2.967946 GCCTACCGCCAGGGACTTT 61.968 63.158 3.06 0.00 43.47 2.66
440 441 4.400251 AGCCTACCGCCAGGGACT 62.400 66.667 3.06 0.00 43.47 3.85
441 442 4.162690 CAGCCTACCGCCAGGGAC 62.163 72.222 3.06 0.00 43.47 4.46
443 444 2.311688 CTAACAGCCTACCGCCAGGG 62.312 65.000 3.06 0.00 43.47 4.45
444 445 1.144057 CTAACAGCCTACCGCCAGG 59.856 63.158 0.00 0.00 45.13 4.45
445 446 0.179108 GTCTAACAGCCTACCGCCAG 60.179 60.000 0.00 0.00 38.78 4.85
446 447 1.610554 GGTCTAACAGCCTACCGCCA 61.611 60.000 0.00 0.00 38.78 5.69
447 448 1.143401 GGTCTAACAGCCTACCGCC 59.857 63.158 0.00 0.00 38.78 6.13
448 449 1.143401 GGGTCTAACAGCCTACCGC 59.857 63.158 0.00 0.00 39.90 5.68
454 455 0.540454 GGTGGTAGGGTCTAACAGCC 59.460 60.000 10.13 4.16 43.93 4.85
455 456 1.272807 TGGTGGTAGGGTCTAACAGC 58.727 55.000 13.36 13.36 0.00 4.40
456 457 3.104512 TCATGGTGGTAGGGTCTAACAG 58.895 50.000 0.00 0.00 0.00 3.16
457 458 3.193395 TCATGGTGGTAGGGTCTAACA 57.807 47.619 0.00 0.00 0.00 2.41
458 459 3.518303 AGTTCATGGTGGTAGGGTCTAAC 59.482 47.826 0.00 0.00 0.00 2.34
459 460 3.773119 GAGTTCATGGTGGTAGGGTCTAA 59.227 47.826 0.00 0.00 0.00 2.10
460 461 3.012502 AGAGTTCATGGTGGTAGGGTCTA 59.987 47.826 0.00 0.00 0.00 2.59
462 463 2.093447 CAGAGTTCATGGTGGTAGGGTC 60.093 54.545 0.00 0.00 0.00 4.46
464 465 1.210478 CCAGAGTTCATGGTGGTAGGG 59.790 57.143 0.00 0.00 32.85 3.53
466 467 1.740380 CGCCAGAGTTCATGGTGGTAG 60.740 57.143 0.00 0.00 43.26 3.18
468 469 1.003355 CGCCAGAGTTCATGGTGGT 60.003 57.895 0.00 0.00 43.26 4.16
470 471 0.249120 TACCGCCAGAGTTCATGGTG 59.751 55.000 0.00 0.00 45.94 4.17
471 472 0.537188 CTACCGCCAGAGTTCATGGT 59.463 55.000 0.00 0.00 40.17 3.55
473 474 0.108186 TGCTACCGCCAGAGTTCATG 60.108 55.000 0.00 0.00 34.43 3.07
474 475 0.613260 TTGCTACCGCCAGAGTTCAT 59.387 50.000 0.00 0.00 34.43 2.57
475 476 0.394938 TTTGCTACCGCCAGAGTTCA 59.605 50.000 0.00 0.00 34.43 3.18
476 477 1.464997 CTTTTGCTACCGCCAGAGTTC 59.535 52.381 0.00 0.00 34.43 3.01
477 478 1.523758 CTTTTGCTACCGCCAGAGTT 58.476 50.000 0.00 0.00 34.43 3.01
479 480 1.026718 CCCTTTTGCTACCGCCAGAG 61.027 60.000 0.00 0.00 34.43 3.35
480 481 1.002624 CCCTTTTGCTACCGCCAGA 60.003 57.895 0.00 0.00 34.43 3.86
481 482 1.303317 ACCCTTTTGCTACCGCCAG 60.303 57.895 0.00 0.00 34.43 4.85
482 483 1.302993 GACCCTTTTGCTACCGCCA 60.303 57.895 0.00 0.00 34.43 5.69
483 484 1.302993 TGACCCTTTTGCTACCGCC 60.303 57.895 0.00 0.00 34.43 6.13
484 485 0.321298 TCTGACCCTTTTGCTACCGC 60.321 55.000 0.00 0.00 0.00 5.68
486 487 3.055094 TGAGATCTGACCCTTTTGCTACC 60.055 47.826 0.00 0.00 0.00 3.18
487 488 4.207891 TGAGATCTGACCCTTTTGCTAC 57.792 45.455 0.00 0.00 0.00 3.58
488 489 4.908601 TTGAGATCTGACCCTTTTGCTA 57.091 40.909 0.00 0.00 0.00 3.49
489 490 3.795688 TTGAGATCTGACCCTTTTGCT 57.204 42.857 0.00 0.00 0.00 3.91
490 491 4.853924 TTTTGAGATCTGACCCTTTTGC 57.146 40.909 0.00 0.00 0.00 3.68
517 518 9.231297 CCTATTCAAGATTTGACCTTAGTTTGA 57.769 33.333 0.00 0.00 39.87 2.69
518 519 9.014297 ACCTATTCAAGATTTGACCTTAGTTTG 57.986 33.333 0.00 0.00 39.87 2.93
519 520 9.588096 AACCTATTCAAGATTTGACCTTAGTTT 57.412 29.630 0.00 0.00 39.87 2.66
520 521 9.588096 AAACCTATTCAAGATTTGACCTTAGTT 57.412 29.630 0.00 0.00 39.87 2.24
523 524 9.581289 TTGAAACCTATTCAAGATTTGACCTTA 57.419 29.630 0.00 0.00 39.87 2.69
524 525 8.477419 TTGAAACCTATTCAAGATTTGACCTT 57.523 30.769 0.00 0.00 39.87 3.50
525 526 8.477419 TTTGAAACCTATTCAAGATTTGACCT 57.523 30.769 4.09 0.00 39.87 3.85
526 527 9.541143 TTTTTGAAACCTATTCAAGATTTGACC 57.459 29.630 4.09 0.00 39.87 4.02
550 551 3.878160 TTTTCGTGCTTTGACCCTTTT 57.122 38.095 0.00 0.00 0.00 2.27
551 552 4.400529 AATTTTCGTGCTTTGACCCTTT 57.599 36.364 0.00 0.00 0.00 3.11
552 553 4.119136 CAAATTTTCGTGCTTTGACCCTT 58.881 39.130 0.00 0.00 32.83 3.95
553 554 3.716601 CAAATTTTCGTGCTTTGACCCT 58.283 40.909 0.00 0.00 32.83 4.34
554 555 2.220824 GCAAATTTTCGTGCTTTGACCC 59.779 45.455 0.00 0.00 37.78 4.46
555 556 2.220824 GGCAAATTTTCGTGCTTTGACC 59.779 45.455 0.22 0.00 40.70 4.02
558 559 1.530720 GGGGCAAATTTTCGTGCTTTG 59.469 47.619 0.22 0.00 40.70 2.77
559 560 1.542328 GGGGGCAAATTTTCGTGCTTT 60.542 47.619 0.22 0.00 40.70 3.51
560 561 0.034756 GGGGGCAAATTTTCGTGCTT 59.965 50.000 0.22 0.00 40.70 3.91
561 562 1.118356 TGGGGGCAAATTTTCGTGCT 61.118 50.000 0.22 0.00 40.70 4.40
564 565 1.256812 CTCTGGGGGCAAATTTTCGT 58.743 50.000 0.00 0.00 0.00 3.85
567 568 1.269958 GAGCTCTGGGGGCAAATTTT 58.730 50.000 6.43 0.00 0.00 1.82
568 569 0.114954 TGAGCTCTGGGGGCAAATTT 59.885 50.000 16.19 0.00 0.00 1.82
569 570 0.613012 GTGAGCTCTGGGGGCAAATT 60.613 55.000 16.19 0.00 0.00 1.82
570 571 1.000396 GTGAGCTCTGGGGGCAAAT 60.000 57.895 16.19 0.00 0.00 2.32
571 572 2.156098 AGTGAGCTCTGGGGGCAAA 61.156 57.895 16.19 0.00 0.00 3.68
574 575 3.322318 GACAGTGAGCTCTGGGGGC 62.322 68.421 16.19 0.04 39.48 5.80
576 577 0.965866 TACGACAGTGAGCTCTGGGG 60.966 60.000 16.19 4.57 39.48 4.96
577 578 0.453793 CTACGACAGTGAGCTCTGGG 59.546 60.000 16.19 6.41 39.48 4.45
593 6842 3.126000 GTGCTCTTGGAATCTTGCACTAC 59.874 47.826 8.40 0.00 44.80 2.73
678 6928 4.646040 CCATGAATTAGGCTTCCACAATGA 59.354 41.667 0.00 0.00 0.00 2.57
731 6984 1.204704 TCAGACGATGCTTTCCACGAT 59.795 47.619 0.00 0.00 0.00 3.73
733 6986 1.391485 CTTCAGACGATGCTTTCCACG 59.609 52.381 0.00 0.00 0.00 4.94
834 7096 5.931146 CAGGTCAGGATTCTGCATAATACTC 59.069 44.000 6.58 0.00 40.69 2.59
836 7098 5.858381 TCAGGTCAGGATTCTGCATAATAC 58.142 41.667 0.00 0.00 40.69 1.89
840 7102 5.128205 CAATTCAGGTCAGGATTCTGCATA 58.872 41.667 0.00 0.00 40.69 3.14
841 7103 3.947612 ATTCAGGTCAGGATTCTGCAT 57.052 42.857 0.00 0.00 40.69 3.96
842 7104 3.349927 CAATTCAGGTCAGGATTCTGCA 58.650 45.455 0.00 0.00 40.69 4.41
844 7106 3.285484 CCCAATTCAGGTCAGGATTCTG 58.715 50.000 0.00 0.00 42.21 3.02
845 7107 2.357569 GCCCAATTCAGGTCAGGATTCT 60.358 50.000 0.00 0.00 0.00 2.40
846 7108 2.027385 GCCCAATTCAGGTCAGGATTC 58.973 52.381 0.00 0.00 0.00 2.52
847 7109 1.642762 AGCCCAATTCAGGTCAGGATT 59.357 47.619 0.00 0.00 0.00 3.01
849 7111 0.329261 CAGCCCAATTCAGGTCAGGA 59.671 55.000 0.00 0.00 0.00 3.86
850 7112 1.318158 GCAGCCCAATTCAGGTCAGG 61.318 60.000 0.00 0.00 0.00 3.86
851 7113 0.323178 AGCAGCCCAATTCAGGTCAG 60.323 55.000 0.00 0.00 0.00 3.51
852 7114 0.609957 CAGCAGCCCAATTCAGGTCA 60.610 55.000 0.00 0.00 0.00 4.02
855 7117 1.681327 AGCAGCAGCCCAATTCAGG 60.681 57.895 0.00 0.00 43.56 3.86
867 7174 1.632589 TTCAGACTAGGACAGCAGCA 58.367 50.000 0.00 0.00 0.00 4.41
918 7227 2.498807 TATCTGACTGTCTCATGCGC 57.501 50.000 9.51 0.00 0.00 6.09
977 7489 4.523173 TGCTACTCGAAGAAGGAAGAAGAA 59.477 41.667 0.00 0.00 34.09 2.52
1393 8067 4.269183 ACCAAACAAGTGATTCAGTGACA 58.731 39.130 0.00 0.00 0.00 3.58
1673 8353 3.153919 TGGTGTTTTCTACTTCCATGCC 58.846 45.455 0.00 0.00 30.68 4.40
1688 8371 2.264794 GACGATCCCGCTGGTGTT 59.735 61.111 0.00 0.00 39.95 3.32
1838 8536 9.091220 GTAGTACTCCTCCTGGTTATTATTGAT 57.909 37.037 0.00 0.00 34.23 2.57
1877 8575 4.486125 TGGAAGACGATGATTCATCCAA 57.514 40.909 18.67 0.00 37.57 3.53
1924 8622 5.652014 TGACCAAATATTCAGCTTAACCTGG 59.348 40.000 0.00 0.00 33.64 4.45
2035 8733 1.100463 ATGGATGCGCAATGCCGTTA 61.100 50.000 17.11 1.01 45.60 3.18
2110 8808 0.904865 TGCACCCTCCTGTTCGATCT 60.905 55.000 0.00 0.00 0.00 2.75
2359 9057 6.063640 TCAATGCCATCATTCAGATTTACG 57.936 37.500 0.00 0.00 40.74 3.18
2512 9214 4.397420 TCAATAACAACAGCATGACCACT 58.603 39.130 0.00 0.00 39.69 4.00
2531 9236 6.985645 CACTTGAATTTGTTCCTCCAAATCAA 59.014 34.615 0.00 0.00 42.63 2.57
2557 9263 7.663081 AGATTGTCATATATAGGCAAACCACAG 59.337 37.037 7.84 0.00 39.06 3.66
2615 9327 0.304705 GCACGAACCAAGTCAGTGTG 59.695 55.000 0.00 0.00 35.46 3.82
2647 9359 2.443255 ACCTCCTCCAAGCTTTTCTGAA 59.557 45.455 0.00 0.00 0.00 3.02
2770 9485 3.370315 GGATCAGTCCAATTGAGCTCACT 60.370 47.826 18.03 8.67 44.42 3.41
2861 9576 8.274322 ACCATCAAGAGATCCATTTAACATGTA 58.726 33.333 0.00 0.00 30.20 2.29
2875 9590 9.995003 GTCTTAAATAGATGACCATCAAGAGAT 57.005 33.333 12.01 0.00 40.22 2.75
2910 9628 4.082463 TCCAATTTAGGACGGCAACATTTC 60.082 41.667 0.00 0.00 31.23 2.17
3379 10107 5.046807 CCTTTCAGCCTCTTCCAAATTGAAT 60.047 40.000 0.00 0.00 0.00 2.57
3474 10202 0.314302 CTGTTGACCCTCGAGAACGT 59.686 55.000 15.71 6.74 40.69 3.99
3475 10203 0.388649 CCTGTTGACCCTCGAGAACG 60.389 60.000 15.71 3.14 41.26 3.95
3622 10364 4.525487 TCCTTACTCTCCACGTTACAACAT 59.475 41.667 0.00 0.00 0.00 2.71
3631 10373 5.974108 TCCTTTTATTCCTTACTCTCCACG 58.026 41.667 0.00 0.00 0.00 4.94
3640 10382 7.068226 GCAAGCTTACCATCCTTTTATTCCTTA 59.932 37.037 0.00 0.00 0.00 2.69
3728 10476 5.723492 TTCTATCTCATGTTGCAATGACG 57.277 39.130 0.59 0.00 33.08 4.35
3767 10592 0.908198 GTTCCCAGTCTGGCTCTGAT 59.092 55.000 13.99 0.00 35.79 2.90
3789 10621 5.124457 TCCTGCACTGCAATTAGAAATTCTC 59.876 40.000 4.99 0.00 38.41 2.87
3947 10831 1.107945 AATTTGGAAATACCGGGCGG 58.892 50.000 6.32 0.00 42.61 6.13
3952 10836 5.160641 CCACACAGAAATTTGGAAATACCG 58.839 41.667 0.00 0.00 42.61 4.02
3961 10845 7.329226 GGATCATACAAACCACACAGAAATTTG 59.671 37.037 0.00 0.00 36.54 2.32
3975 10859 4.820284 GCTTAGCCAGGATCATACAAAC 57.180 45.455 0.00 0.00 0.00 2.93
4035 10919 6.042781 TGGTACAAACTGTCATCTTCCTACTT 59.957 38.462 0.00 0.00 31.92 2.24
4036 10920 5.542635 TGGTACAAACTGTCATCTTCCTACT 59.457 40.000 0.00 0.00 31.92 2.57
4037 10921 5.638234 GTGGTACAAACTGTCATCTTCCTAC 59.362 44.000 0.00 0.00 44.16 3.18
4038 10922 5.279809 GGTGGTACAAACTGTCATCTTCCTA 60.280 44.000 0.00 0.00 44.16 2.94
4039 10923 4.505039 GGTGGTACAAACTGTCATCTTCCT 60.505 45.833 0.00 0.00 44.16 3.36
4082 11810 2.874648 TAGATGGCCTTGCACAGCGG 62.875 60.000 3.32 0.00 0.00 5.52
4090 11818 8.738645 AGTATTTTCTTTACTAGATGGCCTTG 57.261 34.615 3.32 0.00 31.54 3.61
4132 11860 1.406539 CGCTGGCAATTGGCTTCTATT 59.593 47.619 29.53 0.00 44.01 1.73
4143 11871 0.036105 TCTGATGTGACGCTGGCAAT 60.036 50.000 0.00 0.00 0.00 3.56
4152 11880 4.524328 AGGAAATGGGTTTTCTGATGTGAC 59.476 41.667 0.00 0.00 42.83 3.67
4185 11913 3.674997 TCTTGTGTCTGCCTTGTAATCC 58.325 45.455 0.00 0.00 0.00 3.01
4186 11914 6.985188 TTATCTTGTGTCTGCCTTGTAATC 57.015 37.500 0.00 0.00 0.00 1.75
4222 11950 6.464222 TCATGGTAAGTACAACCTGAAGAAG 58.536 40.000 15.94 0.00 37.91 2.85
4236 11964 4.860802 TTGGGTCATCATCATGGTAAGT 57.139 40.909 0.00 0.00 0.00 2.24
4240 11968 7.038445 TGTTAATTTTTGGGTCATCATCATGGT 60.038 33.333 0.00 0.00 0.00 3.55
4250 11978 5.141182 TGCTAGGTGTTAATTTTTGGGTCA 58.859 37.500 0.00 0.00 0.00 4.02
4266 11994 1.211457 CTGGGAGAAGCAATGCTAGGT 59.789 52.381 8.68 0.00 38.25 3.08
4302 12031 1.135689 GGCAATGGACTGCTTAACACG 60.136 52.381 0.00 0.00 42.25 4.49
4346 12075 3.423154 GCCGGTTCAGCTTCACGG 61.423 66.667 1.90 10.57 46.78 4.94
4348 12077 1.294659 CTCTGCCGGTTCAGCTTCAC 61.295 60.000 1.90 0.00 34.19 3.18
4371 12100 2.483889 GGAAGCCCTTCTTAGATCCACG 60.484 54.545 7.85 0.00 39.45 4.94
4416 12145 0.466739 GGGTGGACGGTTTCAAAGGT 60.467 55.000 0.00 0.00 0.00 3.50
4455 12184 1.689984 TGCTGACAAAACTGATGGCA 58.310 45.000 0.00 0.00 33.92 4.92
4489 12218 2.456119 GGAATGTCGCTGAGTGCCG 61.456 63.158 0.00 0.00 38.78 5.69
4497 12226 0.460987 GCTGTAGCTGGAATGTCGCT 60.461 55.000 0.00 0.00 38.21 4.93
4500 12229 0.543749 AGGGCTGTAGCTGGAATGTC 59.456 55.000 0.00 0.00 41.70 3.06
4505 12234 1.754621 CTCGAGGGCTGTAGCTGGA 60.755 63.158 3.91 0.00 41.70 3.86
4517 12246 1.901538 CGATGAACAGACACTCGAGG 58.098 55.000 18.41 8.36 0.00 4.63
4541 12270 8.525316 TGTTGTATTTCTCTGATTTCATGCAAT 58.475 29.630 0.00 0.00 0.00 3.56
4542 12271 7.884257 TGTTGTATTTCTCTGATTTCATGCAA 58.116 30.769 0.00 0.00 0.00 4.08
4543 12272 7.451501 TGTTGTATTTCTCTGATTTCATGCA 57.548 32.000 0.00 0.00 0.00 3.96
4544 12273 8.746922 TTTGTTGTATTTCTCTGATTTCATGC 57.253 30.769 0.00 0.00 0.00 4.06
4547 12276 9.748708 CCTTTTTGTTGTATTTCTCTGATTTCA 57.251 29.630 0.00 0.00 0.00 2.69
4558 12287 4.546570 GCGCTCTCCTTTTTGTTGTATTT 58.453 39.130 0.00 0.00 0.00 1.40
4561 12290 1.529438 CGCGCTCTCCTTTTTGTTGTA 59.471 47.619 5.56 0.00 0.00 2.41
4567 12296 1.507141 CCACACGCGCTCTCCTTTTT 61.507 55.000 5.73 0.00 0.00 1.94
4586 12315 4.202020 GGTTCAGAGAAACTTTGTGTTCCC 60.202 45.833 0.00 0.00 38.03 3.97
4587 12316 4.398044 TGGTTCAGAGAAACTTTGTGTTCC 59.602 41.667 0.00 0.00 38.03 3.62
4588 12317 5.332707 GTGGTTCAGAGAAACTTTGTGTTC 58.667 41.667 0.00 0.00 38.03 3.18
4589 12318 4.157840 GGTGGTTCAGAGAAACTTTGTGTT 59.842 41.667 0.00 0.00 41.29 3.32
4590 12319 3.694566 GGTGGTTCAGAGAAACTTTGTGT 59.305 43.478 0.00 0.00 0.00 3.72
4591 12320 3.694072 TGGTGGTTCAGAGAAACTTTGTG 59.306 43.478 0.00 0.00 0.00 3.33
4592 12321 3.963129 TGGTGGTTCAGAGAAACTTTGT 58.037 40.909 0.00 0.00 0.00 2.83
4593 12322 4.440112 GGTTGGTGGTTCAGAGAAACTTTG 60.440 45.833 0.00 0.00 0.00 2.77
4594 12323 3.699538 GGTTGGTGGTTCAGAGAAACTTT 59.300 43.478 0.00 0.00 0.00 2.66
4595 12324 3.053619 AGGTTGGTGGTTCAGAGAAACTT 60.054 43.478 0.00 0.00 0.00 2.66
4596 12325 2.509964 AGGTTGGTGGTTCAGAGAAACT 59.490 45.455 0.00 0.00 0.00 2.66
4597 12326 2.932261 AGGTTGGTGGTTCAGAGAAAC 58.068 47.619 0.00 0.00 0.00 2.78
4598 12327 3.662759 AAGGTTGGTGGTTCAGAGAAA 57.337 42.857 0.00 0.00 0.00 2.52
4599 12328 3.662759 AAAGGTTGGTGGTTCAGAGAA 57.337 42.857 0.00 0.00 0.00 2.87
4600 12329 3.662759 AAAAGGTTGGTGGTTCAGAGA 57.337 42.857 0.00 0.00 0.00 3.10
4601 12330 5.316987 AGATAAAAGGTTGGTGGTTCAGAG 58.683 41.667 0.00 0.00 0.00 3.35
4602 12331 5.073144 AGAGATAAAAGGTTGGTGGTTCAGA 59.927 40.000 0.00 0.00 0.00 3.27
4603 12332 5.182001 CAGAGATAAAAGGTTGGTGGTTCAG 59.818 44.000 0.00 0.00 0.00 3.02
4604 12333 5.070001 CAGAGATAAAAGGTTGGTGGTTCA 58.930 41.667 0.00 0.00 0.00 3.18
4605 12334 5.313712 TCAGAGATAAAAGGTTGGTGGTTC 58.686 41.667 0.00 0.00 0.00 3.62
4606 12335 5.319043 TCAGAGATAAAAGGTTGGTGGTT 57.681 39.130 0.00 0.00 0.00 3.67
4607 12336 4.993705 TCAGAGATAAAAGGTTGGTGGT 57.006 40.909 0.00 0.00 0.00 4.16
4608 12337 5.316987 ACTTCAGAGATAAAAGGTTGGTGG 58.683 41.667 0.00 0.00 0.00 4.61
4609 12338 7.119846 CCTTACTTCAGAGATAAAAGGTTGGTG 59.880 40.741 0.00 0.00 0.00 4.17
4610 12339 7.168905 CCTTACTTCAGAGATAAAAGGTTGGT 58.831 38.462 0.00 0.00 0.00 3.67
4611 12340 7.119846 CACCTTACTTCAGAGATAAAAGGTTGG 59.880 40.741 1.22 0.00 0.00 3.77
4612 12341 7.661847 ACACCTTACTTCAGAGATAAAAGGTTG 59.338 37.037 1.22 1.54 0.00 3.77
4613 12342 7.661847 CACACCTTACTTCAGAGATAAAAGGTT 59.338 37.037 1.22 0.00 0.00 3.50
4614 12343 7.016268 TCACACCTTACTTCAGAGATAAAAGGT 59.984 37.037 0.00 0.00 0.00 3.50
4615 12344 7.386851 TCACACCTTACTTCAGAGATAAAAGG 58.613 38.462 0.00 0.00 0.00 3.11
4616 12345 8.307483 TCTCACACCTTACTTCAGAGATAAAAG 58.693 37.037 0.00 0.00 0.00 2.27
4617 12346 8.190326 TCTCACACCTTACTTCAGAGATAAAA 57.810 34.615 0.00 0.00 0.00 1.52
4618 12347 7.776618 TCTCACACCTTACTTCAGAGATAAA 57.223 36.000 0.00 0.00 0.00 1.40
4619 12348 7.147828 CCATCTCACACCTTACTTCAGAGATAA 60.148 40.741 0.00 0.00 38.81 1.75
4620 12349 6.322456 CCATCTCACACCTTACTTCAGAGATA 59.678 42.308 0.00 0.00 38.81 1.98
4621 12350 5.128499 CCATCTCACACCTTACTTCAGAGAT 59.872 44.000 0.00 0.00 40.79 2.75
4622 12351 4.464244 CCATCTCACACCTTACTTCAGAGA 59.536 45.833 0.00 0.00 35.42 3.10
4623 12352 4.753233 CCATCTCACACCTTACTTCAGAG 58.247 47.826 0.00 0.00 0.00 3.35
4624 12353 3.055819 GCCATCTCACACCTTACTTCAGA 60.056 47.826 0.00 0.00 0.00 3.27
4625 12354 3.265791 GCCATCTCACACCTTACTTCAG 58.734 50.000 0.00 0.00 0.00 3.02
4626 12355 2.637382 TGCCATCTCACACCTTACTTCA 59.363 45.455 0.00 0.00 0.00 3.02
4627 12356 3.265791 CTGCCATCTCACACCTTACTTC 58.734 50.000 0.00 0.00 0.00 3.01
4628 12357 2.639839 ACTGCCATCTCACACCTTACTT 59.360 45.455 0.00 0.00 0.00 2.24
4629 12358 2.260822 ACTGCCATCTCACACCTTACT 58.739 47.619 0.00 0.00 0.00 2.24
4630 12359 2.770164 ACTGCCATCTCACACCTTAC 57.230 50.000 0.00 0.00 0.00 2.34


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.