Multiple sequence alignment - TraesCS1A01G013700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G013700 chr1A 100.000 4262 0 0 1 4262 7655067 7650806 0.000000e+00 7871.0
1 TraesCS1A01G013700 chr1A 90.798 326 24 4 2446 2770 7773205 7773525 8.470000e-117 431.0
2 TraesCS1A01G013700 chr1A 93.151 292 15 1 2162 2448 7772871 7773162 1.420000e-114 424.0
3 TraesCS1A01G013700 chr1A 84.507 213 31 2 1898 2108 7772661 7772873 4.320000e-50 209.0
4 TraesCS1A01G013700 chr1A 86.538 104 6 4 3784 3880 7774545 7774647 1.620000e-19 108.0
5 TraesCS1A01G013700 chr1A 100.000 47 0 0 1589 1635 7772541 7772587 2.110000e-13 87.9
6 TraesCS1A01G013700 chr1D 89.790 999 78 19 1927 2921 6327183 6326205 0.000000e+00 1258.0
7 TraesCS1A01G013700 chr1D 91.237 776 33 14 822 1589 6328497 6327749 0.000000e+00 1024.0
8 TraesCS1A01G013700 chr1D 81.628 1192 121 37 3104 4262 6326005 6324879 0.000000e+00 898.0
9 TraesCS1A01G013700 chr1D 95.894 341 12 2 1589 1929 6327587 6327249 6.230000e-153 551.0
10 TraesCS1A01G013700 chr1D 87.736 106 8 2 4114 4215 6459835 6459939 7.490000e-23 119.0
11 TraesCS1A01G013700 chr1B 85.529 1078 127 19 1847 2919 8697178 8698231 0.000000e+00 1099.0
12 TraesCS1A01G013700 chr1B 86.602 515 34 12 306 816 8695614 8696097 1.740000e-148 536.0
13 TraesCS1A01G013700 chr1B 90.099 303 13 8 823 1122 8696198 8696486 1.120000e-100 377.0
14 TraesCS1A01G013700 chr1B 83.024 377 45 13 1217 1591 8696544 8696903 1.480000e-84 324.0
15 TraesCS1A01G013700 chr1B 90.148 203 18 1 3105 3305 8698350 8698552 3.270000e-66 263.0
16 TraesCS1A01G013700 chr1B 88.119 202 18 1 1 196 8695207 8695408 7.120000e-58 235.0
17 TraesCS1A01G013700 chr1B 95.745 47 2 0 1589 1635 8697061 8697107 4.570000e-10 76.8
18 TraesCS1A01G013700 chr7B 80.904 1173 134 39 3103 4242 452332265 452331150 0.000000e+00 843.0
19 TraesCS1A01G013700 chr7B 77.837 564 71 25 3380 3912 452218786 452218246 2.490000e-77 300.0
20 TraesCS1A01G013700 chr7B 89.247 93 10 0 1 93 402809623 402809715 2.690000e-22 117.0
21 TraesCS1A01G013700 chr5B 80.651 553 63 22 1065 1589 376524212 376524748 5.170000e-104 388.0
22 TraesCS1A01G013700 chr5B 80.622 547 62 24 1063 1589 685600883 685600361 2.400000e-102 383.0
23 TraesCS1A01G013700 chr5B 81.572 369 52 10 1065 1432 10583447 10583800 1.500000e-74 291.0
24 TraesCS1A01G013700 chr5B 91.000 100 9 0 1 100 380327665 380327566 7.430000e-28 135.0
25 TraesCS1A01G013700 chr3B 80.870 460 64 15 1911 2364 104485851 104485410 1.470000e-89 340.0
26 TraesCS1A01G013700 chr3B 96.703 91 3 0 1276 1366 104502400 104502310 7.380000e-33 152.0
27 TraesCS1A01G013700 chrUn 80.610 459 67 16 1911 2364 131253732 131254173 6.830000e-88 335.0
28 TraesCS1A01G013700 chrUn 84.830 323 25 11 1281 1589 131253065 131253377 1.930000e-78 303.0
29 TraesCS1A01G013700 chr2B 84.424 321 27 15 1281 1589 557048758 557049067 1.160000e-75 294.0
30 TraesCS1A01G013700 chr2B 90.909 88 8 0 1 88 366017545 366017632 7.490000e-23 119.0
31 TraesCS1A01G013700 chr2B 81.667 120 16 3 20 133 766565418 766565299 1.260000e-15 95.3
32 TraesCS1A01G013700 chr4A 82.209 326 36 8 1281 1589 359177983 359178303 1.180000e-65 261.0
33 TraesCS1A01G013700 chr3D 91.304 92 6 2 2 92 595025004 595025094 1.610000e-24 124.0
34 TraesCS1A01G013700 chr2D 90.909 88 8 0 1 88 296364183 296364096 7.490000e-23 119.0
35 TraesCS1A01G013700 chr2D 81.159 138 20 3 2 133 624365906 624365769 5.830000e-19 106.0
36 TraesCS1A01G013700 chr7A 89.130 92 10 0 2 93 105169766 105169857 9.680000e-22 115.0
37 TraesCS1A01G013700 chr6B 83.193 119 13 4 2 114 515066211 515066094 7.540000e-18 102.0
38 TraesCS1A01G013700 chr7D 80.435 92 16 2 516 606 480438684 480438594 7.650000e-08 69.4
39 TraesCS1A01G013700 chr7D 92.683 41 3 0 610 650 480438578 480438538 4.600000e-05 60.2


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G013700 chr1A 7650806 7655067 4261 True 7871.000000 7871 100.000000 1 4262 1 chr1A.!!$R1 4261
1 TraesCS1A01G013700 chr1A 7772541 7774647 2106 False 251.980000 431 90.998800 1589 3880 5 chr1A.!!$F1 2291
2 TraesCS1A01G013700 chr1D 6324879 6328497 3618 True 932.750000 1258 89.637250 822 4262 4 chr1D.!!$R1 3440
3 TraesCS1A01G013700 chr1B 8695207 8698552 3345 False 415.828571 1099 88.466571 1 3305 7 chr1B.!!$F1 3304
4 TraesCS1A01G013700 chr7B 452331150 452332265 1115 True 843.000000 843 80.904000 3103 4242 1 chr7B.!!$R2 1139
5 TraesCS1A01G013700 chr7B 452218246 452218786 540 True 300.000000 300 77.837000 3380 3912 1 chr7B.!!$R1 532
6 TraesCS1A01G013700 chr5B 376524212 376524748 536 False 388.000000 388 80.651000 1065 1589 1 chr5B.!!$F2 524
7 TraesCS1A01G013700 chr5B 685600361 685600883 522 True 383.000000 383 80.622000 1063 1589 1 chr5B.!!$R2 526
8 TraesCS1A01G013700 chrUn 131253065 131254173 1108 False 319.000000 335 82.720000 1281 2364 2 chrUn.!!$F1 1083

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
974 1189 0.388520 GCGCAATCCCAACCAACTTC 60.389 55.0 0.3 0.0 0.0 3.01 F
1450 1720 0.032267 CCGAGGAAGAAGGGCGTATC 59.968 60.0 0.0 0.0 0.0 2.24 F
2140 2693 0.886490 AAAAGCACTCCACTCAGCGG 60.886 55.0 0.0 0.0 0.0 5.52 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2710 3337 0.250901 AGGAAGAATGCGCACCTTGT 60.251 50.0 25.56 9.34 0.00 3.16 R
3216 3996 0.746204 GCTCCTTGAGGTAGGCTTGC 60.746 60.0 0.00 0.00 35.15 4.01 R
4084 4928 0.243636 CAATCCAACCTTTGCCGACC 59.756 55.0 0.00 0.00 0.00 4.79 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
31 32 8.750298 AGAGGTTTCATTATGGACTATATACGG 58.250 37.037 0.00 0.00 0.00 4.02
33 34 9.096823 AGGTTTCATTATGGACTATATACGGAA 57.903 33.333 0.00 0.00 0.00 4.30
196 203 9.896645 ATATACATAGGAAAATATGAGTGCCAG 57.103 33.333 0.97 0.00 36.76 4.85
198 205 6.845908 ACATAGGAAAATATGAGTGCCAGAT 58.154 36.000 0.97 0.00 36.76 2.90
199 206 7.977818 ACATAGGAAAATATGAGTGCCAGATA 58.022 34.615 0.97 0.00 36.76 1.98
200 207 7.880195 ACATAGGAAAATATGAGTGCCAGATAC 59.120 37.037 0.97 0.00 36.76 2.24
201 208 6.252599 AGGAAAATATGAGTGCCAGATACA 57.747 37.500 0.00 0.00 0.00 2.29
202 209 6.845908 AGGAAAATATGAGTGCCAGATACAT 58.154 36.000 0.00 0.00 0.00 2.29
203 210 7.977818 AGGAAAATATGAGTGCCAGATACATA 58.022 34.615 0.00 0.00 0.00 2.29
204 211 8.609483 AGGAAAATATGAGTGCCAGATACATAT 58.391 33.333 0.00 0.00 36.24 1.78
205 212 9.236006 GGAAAATATGAGTGCCAGATACATATT 57.764 33.333 0.00 0.00 42.21 1.28
208 215 9.672673 AAATATGAGTGCCAGATACATATTACC 57.327 33.333 0.00 0.00 40.70 2.85
209 216 6.942163 ATGAGTGCCAGATACATATTACCT 57.058 37.500 0.00 0.00 0.00 3.08
210 217 6.346477 TGAGTGCCAGATACATATTACCTC 57.654 41.667 0.00 0.00 0.00 3.85
211 218 6.077993 TGAGTGCCAGATACATATTACCTCT 58.922 40.000 0.00 0.00 0.00 3.69
212 219 6.209589 TGAGTGCCAGATACATATTACCTCTC 59.790 42.308 0.00 0.00 0.00 3.20
213 220 6.077993 AGTGCCAGATACATATTACCTCTCA 58.922 40.000 0.00 0.00 0.00 3.27
214 221 6.210385 AGTGCCAGATACATATTACCTCTCAG 59.790 42.308 0.00 0.00 0.00 3.35
215 222 5.047021 TGCCAGATACATATTACCTCTCAGC 60.047 44.000 0.00 0.00 0.00 4.26
216 223 5.645624 CCAGATACATATTACCTCTCAGCG 58.354 45.833 0.00 0.00 0.00 5.18
217 224 5.184096 CCAGATACATATTACCTCTCAGCGT 59.816 44.000 0.00 0.00 0.00 5.07
218 225 6.374613 CCAGATACATATTACCTCTCAGCGTA 59.625 42.308 0.00 0.00 0.00 4.42
219 226 7.067615 CCAGATACATATTACCTCTCAGCGTAT 59.932 40.741 0.00 0.00 0.00 3.06
220 227 8.462811 CAGATACATATTACCTCTCAGCGTATT 58.537 37.037 0.00 0.00 0.00 1.89
221 228 8.462811 AGATACATATTACCTCTCAGCGTATTG 58.537 37.037 0.00 0.00 0.00 1.90
222 229 6.406692 ACATATTACCTCTCAGCGTATTGT 57.593 37.500 0.00 0.00 0.00 2.71
223 230 7.520451 ACATATTACCTCTCAGCGTATTGTA 57.480 36.000 0.00 0.00 0.00 2.41
224 231 8.123639 ACATATTACCTCTCAGCGTATTGTAT 57.876 34.615 0.00 0.00 0.00 2.29
225 232 8.029522 ACATATTACCTCTCAGCGTATTGTATG 58.970 37.037 0.00 0.00 0.00 2.39
226 233 5.847111 TTACCTCTCAGCGTATTGTATGT 57.153 39.130 0.00 0.00 0.00 2.29
227 234 6.947644 TTACCTCTCAGCGTATTGTATGTA 57.052 37.500 0.00 0.00 0.00 2.29
228 235 5.847111 ACCTCTCAGCGTATTGTATGTAA 57.153 39.130 0.00 0.00 0.00 2.41
229 236 6.406692 ACCTCTCAGCGTATTGTATGTAAT 57.593 37.500 0.00 0.00 0.00 1.89
230 237 6.817184 ACCTCTCAGCGTATTGTATGTAATT 58.183 36.000 0.00 0.00 0.00 1.40
231 238 7.948357 ACCTCTCAGCGTATTGTATGTAATTA 58.052 34.615 0.00 0.00 0.00 1.40
232 239 8.585881 ACCTCTCAGCGTATTGTATGTAATTAT 58.414 33.333 0.00 0.00 0.00 1.28
264 271 9.696917 ATCAATCTAAAGAACATTTTCCACAAC 57.303 29.630 0.00 0.00 31.28 3.32
265 272 8.690884 TCAATCTAAAGAACATTTTCCACAACA 58.309 29.630 0.00 0.00 31.28 3.33
266 273 8.755018 CAATCTAAAGAACATTTTCCACAACAC 58.245 33.333 0.00 0.00 31.28 3.32
267 274 7.397892 TCTAAAGAACATTTTCCACAACACA 57.602 32.000 0.00 0.00 31.28 3.72
268 275 7.254852 TCTAAAGAACATTTTCCACAACACAC 58.745 34.615 0.00 0.00 31.28 3.82
269 276 4.027572 AGAACATTTTCCACAACACACG 57.972 40.909 0.00 0.00 31.28 4.49
270 277 2.861462 ACATTTTCCACAACACACGG 57.139 45.000 0.00 0.00 0.00 4.94
271 278 2.096248 ACATTTTCCACAACACACGGT 58.904 42.857 0.00 0.00 0.00 4.83
272 279 2.098443 ACATTTTCCACAACACACGGTC 59.902 45.455 0.00 0.00 0.00 4.79
273 280 1.096416 TTTTCCACAACACACGGTCC 58.904 50.000 0.00 0.00 0.00 4.46
274 281 0.748729 TTTCCACAACACACGGTCCC 60.749 55.000 0.00 0.00 0.00 4.46
275 282 1.911702 TTCCACAACACACGGTCCCA 61.912 55.000 0.00 0.00 0.00 4.37
276 283 2.184167 CCACAACACACGGTCCCAC 61.184 63.158 0.00 0.00 0.00 4.61
277 284 1.153249 CACAACACACGGTCCCACT 60.153 57.895 0.00 0.00 0.00 4.00
278 285 1.145377 ACAACACACGGTCCCACTC 59.855 57.895 0.00 0.00 0.00 3.51
279 286 1.597027 CAACACACGGTCCCACTCC 60.597 63.158 0.00 0.00 0.00 3.85
289 296 2.902523 GGTCCCACTCCGATTTTAGAC 58.097 52.381 0.00 0.00 0.00 2.59
290 297 2.419713 GGTCCCACTCCGATTTTAGACC 60.420 54.545 0.00 0.00 36.12 3.85
291 298 1.835531 TCCCACTCCGATTTTAGACCC 59.164 52.381 0.00 0.00 0.00 4.46
292 299 1.134189 CCCACTCCGATTTTAGACCCC 60.134 57.143 0.00 0.00 0.00 4.95
293 300 1.134189 CCACTCCGATTTTAGACCCCC 60.134 57.143 0.00 0.00 0.00 5.40
294 301 1.557832 CACTCCGATTTTAGACCCCCA 59.442 52.381 0.00 0.00 0.00 4.96
295 302 2.026636 CACTCCGATTTTAGACCCCCAA 60.027 50.000 0.00 0.00 0.00 4.12
296 303 2.645797 ACTCCGATTTTAGACCCCCAAA 59.354 45.455 0.00 0.00 0.00 3.28
297 304 3.279434 CTCCGATTTTAGACCCCCAAAG 58.721 50.000 0.00 0.00 0.00 2.77
298 305 2.914278 TCCGATTTTAGACCCCCAAAGA 59.086 45.455 0.00 0.00 0.00 2.52
299 306 3.331294 TCCGATTTTAGACCCCCAAAGAA 59.669 43.478 0.00 0.00 0.00 2.52
300 307 4.083565 CCGATTTTAGACCCCCAAAGAAA 58.916 43.478 0.00 0.00 0.00 2.52
301 308 4.525100 CCGATTTTAGACCCCCAAAGAAAA 59.475 41.667 0.00 0.00 0.00 2.29
302 309 5.011227 CCGATTTTAGACCCCCAAAGAAAAA 59.989 40.000 0.00 0.00 0.00 1.94
303 310 6.295632 CCGATTTTAGACCCCCAAAGAAAAAT 60.296 38.462 0.00 0.00 0.00 1.82
304 311 6.811665 CGATTTTAGACCCCCAAAGAAAAATC 59.188 38.462 0.00 0.00 37.98 2.17
403 506 4.416601 ACCTAGAAGCCCGGCCCT 62.417 66.667 5.55 6.47 0.00 5.19
434 537 6.372381 CCCCCAAAAAGCTCAAAATGATTAAG 59.628 38.462 0.00 0.00 0.00 1.85
437 540 9.054922 CCCAAAAAGCTCAAAATGATTAAGAAA 57.945 29.630 0.00 0.00 0.00 2.52
540 646 6.864342 AGACACTCTCGCTAAGCTTTATTTA 58.136 36.000 3.20 0.00 0.00 1.40
546 652 9.250624 ACTCTCGCTAAGCTTTATTTATACTTG 57.749 33.333 3.20 0.00 0.00 3.16
552 658 9.439537 GCTAAGCTTTATTTATACTTGCAGAAC 57.560 33.333 3.20 0.00 0.00 3.01
568 674 6.546972 TGCAGAACGTTTACATGTATGAAA 57.453 33.333 6.36 0.00 0.00 2.69
571 677 7.095017 TGCAGAACGTTTACATGTATGAAATGA 60.095 33.333 15.48 0.00 0.00 2.57
576 682 9.959749 AACGTTTACATGTATGAAATGAAGTTT 57.040 25.926 15.48 1.18 0.00 2.66
577 683 9.607285 ACGTTTACATGTATGAAATGAAGTTTC 57.393 29.630 15.48 0.00 45.21 2.78
578 684 9.061610 CGTTTACATGTATGAAATGAAGTTTCC 57.938 33.333 6.36 0.00 44.53 3.13
581 687 5.125417 ACATGTATGAAATGAAGTTTCCCCG 59.875 40.000 0.00 0.00 44.53 5.73
583 689 2.668144 TGAAATGAAGTTTCCCCGGT 57.332 45.000 0.00 0.00 44.53 5.28
584 690 2.952116 TGAAATGAAGTTTCCCCGGTT 58.048 42.857 0.00 0.00 44.53 4.44
585 691 2.625790 TGAAATGAAGTTTCCCCGGTTG 59.374 45.455 0.00 0.00 44.53 3.77
586 692 1.627864 AATGAAGTTTCCCCGGTTGG 58.372 50.000 0.00 0.00 0.00 3.77
587 693 0.898326 ATGAAGTTTCCCCGGTTGGC 60.898 55.000 0.00 0.00 0.00 4.52
588 694 2.203582 AAGTTTCCCCGGTTGGCC 60.204 61.111 0.00 0.00 0.00 5.36
589 695 2.708593 GAAGTTTCCCCGGTTGGCCT 62.709 60.000 3.32 0.00 0.00 5.19
590 696 1.428718 AAGTTTCCCCGGTTGGCCTA 61.429 55.000 3.32 0.00 0.00 3.93
591 697 1.378119 GTTTCCCCGGTTGGCCTAG 60.378 63.158 3.32 0.00 0.00 3.02
592 698 3.276642 TTTCCCCGGTTGGCCTAGC 62.277 63.158 3.32 5.02 0.00 3.42
603 709 4.427394 GCCTAGCCAGACATGACG 57.573 61.111 0.00 0.00 0.00 4.35
604 710 1.227380 GCCTAGCCAGACATGACGG 60.227 63.158 0.00 0.45 0.00 4.79
605 711 1.227380 CCTAGCCAGACATGACGGC 60.227 63.158 17.84 17.84 46.62 5.68
633 739 0.670546 TGCTTAGCAAGACCGTGAGC 60.671 55.000 3.67 0.00 34.76 4.26
634 740 1.362406 GCTTAGCAAGACCGTGAGCC 61.362 60.000 0.00 0.00 0.00 4.70
643 749 1.000145 GACCGTGAGCCTCGAAATTC 59.000 55.000 0.00 0.00 0.00 2.17
644 750 0.736325 ACCGTGAGCCTCGAAATTCG 60.736 55.000 9.38 9.38 42.10 3.34
696 803 3.304726 GCTCCTAAACTTGTGAACTTGCC 60.305 47.826 0.00 0.00 0.00 4.52
700 807 3.457610 AAACTTGTGAACTTGCCCATG 57.542 42.857 0.00 0.00 0.00 3.66
736 843 1.981853 GCCGGGCTTGGGATTTCAA 60.982 57.895 12.87 0.00 0.00 2.69
740 847 1.067635 CGGGCTTGGGATTTCAACTTG 60.068 52.381 0.00 0.00 0.00 3.16
796 903 7.540474 TTGGGTATATGATCAGGTCTAGTTC 57.460 40.000 0.09 0.00 0.00 3.01
797 904 6.620429 TGGGTATATGATCAGGTCTAGTTCA 58.380 40.000 0.09 0.00 0.00 3.18
800 907 8.598041 GGGTATATGATCAGGTCTAGTTCATTT 58.402 37.037 0.09 0.00 30.46 2.32
839 1040 1.675552 CCGGTTGACTTGTTTGACCT 58.324 50.000 0.00 0.00 0.00 3.85
922 1137 4.566426 AGAAATCCCTCCTCTTGTCTTG 57.434 45.455 0.00 0.00 0.00 3.02
923 1138 3.913163 AGAAATCCCTCCTCTTGTCTTGT 59.087 43.478 0.00 0.00 0.00 3.16
926 1141 2.977808 TCCCTCCTCTTGTCTTGTCTT 58.022 47.619 0.00 0.00 0.00 3.01
927 1142 2.900546 TCCCTCCTCTTGTCTTGTCTTC 59.099 50.000 0.00 0.00 0.00 2.87
928 1143 2.903135 CCCTCCTCTTGTCTTGTCTTCT 59.097 50.000 0.00 0.00 0.00 2.85
929 1144 3.056179 CCCTCCTCTTGTCTTGTCTTCTC 60.056 52.174 0.00 0.00 0.00 2.87
930 1145 3.366883 CCTCCTCTTGTCTTGTCTTCTCG 60.367 52.174 0.00 0.00 0.00 4.04
942 1157 3.665675 CTTCTCGTGGGGCCTTCGG 62.666 68.421 17.28 10.37 0.00 4.30
954 1169 1.636340 CCTTCGGTATTCTTGCGCG 59.364 57.895 0.00 0.00 0.00 6.86
972 1187 2.275380 GGCGCAATCCCAACCAACT 61.275 57.895 10.83 0.00 0.00 3.16
973 1188 1.665442 GCGCAATCCCAACCAACTT 59.335 52.632 0.30 0.00 0.00 2.66
974 1189 0.388520 GCGCAATCCCAACCAACTTC 60.389 55.000 0.30 0.00 0.00 3.01
975 1190 0.958091 CGCAATCCCAACCAACTTCA 59.042 50.000 0.00 0.00 0.00 3.02
976 1191 1.068333 CGCAATCCCAACCAACTTCAG 60.068 52.381 0.00 0.00 0.00 3.02
1127 1345 2.400269 TACACCGAGGCAACCCCAAC 62.400 60.000 0.00 0.00 35.39 3.77
1131 1349 4.696805 GAGGCAACCCCAACCCCC 62.697 72.222 0.00 0.00 35.39 5.40
1173 1391 1.356494 CCTCCCCCAATCCCCTTCTC 61.356 65.000 0.00 0.00 0.00 2.87
1432 1690 1.821136 CCCTTTCTTCAGTTCATGCCC 59.179 52.381 0.00 0.00 0.00 5.36
1449 1719 1.400530 CCCGAGGAAGAAGGGCGTAT 61.401 60.000 0.00 0.00 38.51 3.06
1450 1720 0.032267 CCGAGGAAGAAGGGCGTATC 59.968 60.000 0.00 0.00 0.00 2.24
1486 1758 2.677337 GCAGGTTTCAGAGCTTCATCTC 59.323 50.000 0.00 0.00 32.70 2.75
1500 1772 4.142859 GCTTCATCTCTTCTTGCTTCTGTG 60.143 45.833 0.00 0.00 0.00 3.66
1502 1774 5.417754 TCATCTCTTCTTGCTTCTGTGAT 57.582 39.130 0.00 0.00 0.00 3.06
1665 2132 5.300034 CCTGCCTTCTTCACATGCATAAATA 59.700 40.000 0.00 0.00 0.00 1.40
1678 2145 7.972832 CACATGCATAAATAATGTAACCACACA 59.027 33.333 0.00 0.00 37.54 3.72
1697 2164 4.742201 CCACTGGGACGCTGACCG 62.742 72.222 3.35 0.00 44.21 4.79
1729 2201 6.322969 TCCTGTTCTGAGTTGTAGTCTAACAA 59.677 38.462 0.00 0.00 37.03 2.83
1730 2202 7.015292 TCCTGTTCTGAGTTGTAGTCTAACAAT 59.985 37.037 0.00 0.00 41.18 2.71
1756 2228 1.737236 TGGATGTTATTGTCTGCGTGC 59.263 47.619 0.00 0.00 0.00 5.34
1759 2231 2.455674 TGTTATTGTCTGCGTGCTCT 57.544 45.000 0.00 0.00 0.00 4.09
1811 2294 5.337330 CCCTGTCCTCTTTGACGTTAGTAAT 60.337 44.000 0.00 0.00 38.11 1.89
1929 2412 3.173151 TCACCAAGCTCTCCTGATTACA 58.827 45.455 0.00 0.00 0.00 2.41
1932 2483 5.053145 CACCAAGCTCTCCTGATTACATAC 58.947 45.833 0.00 0.00 0.00 2.39
2140 2693 0.886490 AAAAGCACTCCACTCAGCGG 60.886 55.000 0.00 0.00 0.00 5.52
2183 2747 9.308318 GTTTAAGGTACATTGTGTGTTGAAATT 57.692 29.630 2.37 0.00 42.29 1.82
2185 2749 9.953697 TTAAGGTACATTGTGTGTTGAAATTAC 57.046 29.630 2.37 0.00 42.29 1.89
2186 2750 6.977213 AGGTACATTGTGTGTTGAAATTACC 58.023 36.000 0.00 0.00 42.29 2.85
2187 2751 6.775629 AGGTACATTGTGTGTTGAAATTACCT 59.224 34.615 0.00 0.00 42.29 3.08
2188 2752 7.286775 AGGTACATTGTGTGTTGAAATTACCTT 59.713 33.333 0.00 0.00 36.77 3.50
2189 2753 7.381139 GGTACATTGTGTGTTGAAATTACCTTG 59.619 37.037 0.00 0.00 42.29 3.61
2190 2754 7.106439 ACATTGTGTGTTGAAATTACCTTGA 57.894 32.000 0.00 0.00 38.01 3.02
2191 2755 7.725251 ACATTGTGTGTTGAAATTACCTTGAT 58.275 30.769 0.00 0.00 38.01 2.57
2192 2756 8.855110 ACATTGTGTGTTGAAATTACCTTGATA 58.145 29.630 0.00 0.00 38.01 2.15
2193 2757 9.859427 CATTGTGTGTTGAAATTACCTTGATAT 57.141 29.630 0.00 0.00 0.00 1.63
2266 2843 1.613437 AGGGTCAATTCGGCAAAACTG 59.387 47.619 0.00 0.00 0.00 3.16
2386 2968 2.622436 GAGCATCACTTTCTTAGCGGT 58.378 47.619 0.00 0.00 33.17 5.68
2449 3076 4.807304 CCAGAGCAATGCAAATTGTTATCC 59.193 41.667 8.35 0.00 34.21 2.59
2761 3434 8.652290 GGTATCTGTTTATAGAGAACCCTTGAT 58.348 37.037 0.00 0.00 33.64 2.57
2802 3477 7.418337 TTTCTACTGGTGTCTGCTAATATCA 57.582 36.000 0.00 0.00 0.00 2.15
2819 3494 8.109634 GCTAATATCATCCCCTGAAATTCCTTA 58.890 37.037 0.00 0.00 37.44 2.69
2827 3502 6.659824 TCCCCTGAAATTCCTTAATACAGAC 58.340 40.000 0.00 0.00 34.42 3.51
2988 3692 3.006537 GGTGTAGCTGAGTTGAACTGGTA 59.993 47.826 0.90 0.00 0.00 3.25
3003 3707 6.862209 TGAACTGGTACATTATTTGATTGGC 58.138 36.000 0.00 0.00 38.20 4.52
3008 3712 7.231317 ACTGGTACATTATTTGATTGGCATAGG 59.769 37.037 0.00 0.00 38.20 2.57
3009 3713 7.066142 TGGTACATTATTTGATTGGCATAGGT 58.934 34.615 0.00 0.00 0.00 3.08
3010 3714 8.221251 TGGTACATTATTTGATTGGCATAGGTA 58.779 33.333 0.00 0.00 0.00 3.08
3011 3715 9.243105 GGTACATTATTTGATTGGCATAGGTAT 57.757 33.333 0.00 0.00 0.00 2.73
3013 3717 8.938801 ACATTATTTGATTGGCATAGGTATGA 57.061 30.769 0.95 0.00 35.75 2.15
3032 3736 5.902613 ATGACACCAGGTATGTTTTGATG 57.097 39.130 0.00 0.00 0.00 3.07
3033 3737 4.979335 TGACACCAGGTATGTTTTGATGA 58.021 39.130 0.00 0.00 0.00 2.92
3034 3738 5.569355 TGACACCAGGTATGTTTTGATGAT 58.431 37.500 0.00 0.00 0.00 2.45
3082 3821 7.823149 AACTTCGCTTTACATATAACTTCGT 57.177 32.000 0.00 0.00 0.00 3.85
3100 3839 5.532406 ACTTCGTATATGTGGTACATACGGT 59.468 40.000 17.53 9.40 43.13 4.83
3114 3892 7.390996 TGGTACATACGGTTTGATGTTGTAAAT 59.609 33.333 5.58 0.00 37.47 1.40
3131 3911 7.175990 TGTTGTAAATCTCACAATAACCTTCCC 59.824 37.037 0.00 0.00 38.13 3.97
3198 3978 2.352960 GCATCAGTTGGTTCCGAATCTC 59.647 50.000 0.00 0.00 0.00 2.75
3216 3996 0.674581 TCGCCATCAAGGAAGCAGTG 60.675 55.000 0.00 0.00 41.22 3.66
3422 4211 1.142870 AGCCAACACAGTGGAAGCTAA 59.857 47.619 5.31 0.00 41.65 3.09
3446 4235 3.076621 CAGCTTGCTTGACCTGTGATTA 58.923 45.455 0.00 0.00 0.00 1.75
3452 4241 4.910195 TGCTTGACCTGTGATTATCTGTT 58.090 39.130 0.00 0.00 0.00 3.16
3459 4248 4.697352 ACCTGTGATTATCTGTTGCAGTTC 59.303 41.667 0.00 0.00 32.61 3.01
3469 4258 1.828595 TGTTGCAGTTCGCCTATAGGA 59.171 47.619 23.61 0.00 41.33 2.94
3471 4260 2.802816 GTTGCAGTTCGCCTATAGGATG 59.197 50.000 23.61 13.57 41.33 3.51
3488 4277 4.521146 AGGATGGTCATTTTCAGTGCTAG 58.479 43.478 0.00 0.00 0.00 3.42
3501 4290 6.859112 TTCAGTGCTAGGTCTCTAAGATTT 57.141 37.500 0.00 0.00 0.00 2.17
3504 4293 5.026790 AGTGCTAGGTCTCTAAGATTTGGT 58.973 41.667 0.00 0.00 0.00 3.67
3520 4309 0.840617 TGGTGGAACTTGGCTGTACA 59.159 50.000 0.00 0.00 36.74 2.90
3521 4310 1.235724 GGTGGAACTTGGCTGTACAC 58.764 55.000 0.00 0.00 36.74 2.90
3522 4311 1.202770 GGTGGAACTTGGCTGTACACT 60.203 52.381 0.00 0.00 36.74 3.55
3543 4332 7.433708 CACTTGATAGTGGTTTGTGTGATAA 57.566 36.000 0.00 0.00 46.52 1.75
3580 4374 9.521841 TCATTTGTTTGGTCCAGTAATAATACA 57.478 29.630 0.00 0.00 34.29 2.29
3627 4423 5.345702 CCATTTCTGCATTGTGAATTCGAT 58.654 37.500 0.04 0.00 0.00 3.59
3629 4425 5.375417 TTTCTGCATTGTGAATTCGATGT 57.625 34.783 14.09 0.00 33.21 3.06
3683 4479 7.824289 TGTAGACAAGGATTCCTATGTTTGAAG 59.176 37.037 5.43 0.00 31.13 3.02
3684 4480 6.784031 AGACAAGGATTCCTATGTTTGAAGT 58.216 36.000 5.43 0.00 31.13 3.01
3694 4490 2.341846 TGTTTGAAGTGAGGTCCCAC 57.658 50.000 3.05 3.05 37.32 4.61
3695 4491 1.226746 GTTTGAAGTGAGGTCCCACG 58.773 55.000 5.22 0.00 41.67 4.94
3696 4492 0.534203 TTTGAAGTGAGGTCCCACGC 60.534 55.000 5.22 0.00 41.67 5.34
3707 4503 2.167900 AGGTCCCACGCTATGTAGAAAC 59.832 50.000 0.00 0.00 0.00 2.78
3708 4504 2.547826 GTCCCACGCTATGTAGAAACC 58.452 52.381 0.00 0.00 0.00 3.27
3719 4522 3.838244 TGTAGAAACCTGTGAGCAACT 57.162 42.857 0.00 0.00 0.00 3.16
3851 4688 5.417580 TCTTTCGGGTAAATTTCAATGGGAG 59.582 40.000 0.00 0.00 0.00 4.30
3867 4704 1.476891 GGGAGCTGACGAGTATTGTGA 59.523 52.381 0.00 0.00 28.27 3.58
3875 4712 5.394224 TGACGAGTATTGTGACCATGTTA 57.606 39.130 0.00 0.00 28.27 2.41
3880 4717 7.581476 ACGAGTATTGTGACCATGTTAAAAAG 58.419 34.615 0.00 0.00 0.00 2.27
3974 4813 6.129168 GGATATAAACGACACGAGCATAACTG 60.129 42.308 0.00 0.00 0.00 3.16
3975 4814 1.710013 AACGACACGAGCATAACTGG 58.290 50.000 0.00 0.00 0.00 4.00
3983 4822 1.754803 CGAGCATAACTGGGGTAGTGA 59.245 52.381 0.00 0.00 40.26 3.41
4002 4845 6.199557 AGTGATAGCTCCTTCTCTGATCTA 57.800 41.667 0.00 0.00 0.00 1.98
4016 4860 3.119459 TCTGATCTAGAGTTCCAACGCAC 60.119 47.826 0.00 0.00 0.00 5.34
4038 4882 3.806521 CAGATGGCTGTAGTCTTGTATGC 59.193 47.826 0.00 0.00 37.37 3.14
4057 4901 7.822658 TGTATGCATTTGGTAGGTTTTCTTAC 58.177 34.615 3.54 0.00 0.00 2.34
4058 4902 7.668052 TGTATGCATTTGGTAGGTTTTCTTACT 59.332 33.333 3.54 0.00 33.65 2.24
4060 4904 7.681939 TGCATTTGGTAGGTTTTCTTACTAG 57.318 36.000 0.00 0.00 33.65 2.57
4090 4934 3.378911 TGAAAATTTTGGAAGGTCGGC 57.621 42.857 8.47 0.00 0.00 5.54
4093 4937 3.828875 AAATTTTGGAAGGTCGGCAAA 57.171 38.095 0.00 0.00 0.00 3.68
4099 4943 1.524008 GGAAGGTCGGCAAAGGTTGG 61.524 60.000 0.00 0.00 0.00 3.77
4107 4951 3.520187 GCAAAGGTTGGATTGCCTG 57.480 52.632 0.00 0.00 44.72 4.85
4108 4952 0.968405 GCAAAGGTTGGATTGCCTGA 59.032 50.000 0.00 0.00 44.72 3.86
4109 4953 1.344114 GCAAAGGTTGGATTGCCTGAA 59.656 47.619 0.00 0.00 44.72 3.02
4110 4954 2.027837 GCAAAGGTTGGATTGCCTGAAT 60.028 45.455 0.00 0.00 44.72 2.57
4111 4955 3.557686 GCAAAGGTTGGATTGCCTGAATT 60.558 43.478 0.00 0.00 44.72 2.17
4112 4956 3.967332 AAGGTTGGATTGCCTGAATTG 57.033 42.857 0.00 0.00 34.90 2.32
4119 4963 6.168389 GTTGGATTGCCTGAATTGAGAATTT 58.832 36.000 0.00 0.00 34.31 1.82
4123 4967 6.312180 GGATTGCCTGAATTGAGAATTTTGTC 59.688 38.462 0.00 0.00 0.00 3.18
4141 4985 1.613925 GTCCTTTTGGCCAAGAGAACC 59.386 52.381 32.09 17.45 40.12 3.62
4142 4986 1.216678 TCCTTTTGGCCAAGAGAACCA 59.783 47.619 32.09 13.49 40.12 3.67
4146 4990 1.408969 TTGGCCAAGAGAACCAAACC 58.591 50.000 16.05 0.00 40.42 3.27
4168 5012 2.533266 TGTTTGAGTCTGAGCTGTCC 57.467 50.000 0.00 0.00 0.00 4.02
4170 5014 1.070758 GTTTGAGTCTGAGCTGTCCCA 59.929 52.381 0.00 0.00 0.00 4.37
4173 5017 1.980765 TGAGTCTGAGCTGTCCCATTT 59.019 47.619 0.00 0.00 0.00 2.32
4183 5027 4.218312 AGCTGTCCCATTTTTCTTCTTGT 58.782 39.130 0.00 0.00 0.00 3.16
4187 5031 4.959210 TGTCCCATTTTTCTTCTTGTCCAA 59.041 37.500 0.00 0.00 0.00 3.53
4189 5033 6.070538 TGTCCCATTTTTCTTCTTGTCCAAAA 60.071 34.615 0.00 0.00 0.00 2.44
4203 5051 2.893489 GTCCAAAAGACAATCCCTTGCT 59.107 45.455 0.00 0.00 45.55 3.91
4205 5053 4.079253 TCCAAAAGACAATCCCTTGCTAC 58.921 43.478 0.00 0.00 35.69 3.58
4213 5061 4.666512 ACAATCCCTTGCTACACATTTCT 58.333 39.130 0.00 0.00 35.69 2.52
4217 5065 4.469657 TCCCTTGCTACACATTTCTTGTT 58.530 39.130 0.00 0.00 36.00 2.83
4220 5068 5.451798 CCCTTGCTACACATTTCTTGTTGTT 60.452 40.000 0.00 0.00 36.00 2.83
4221 5069 6.238897 CCCTTGCTACACATTTCTTGTTGTTA 60.239 38.462 0.00 0.00 36.00 2.41
4222 5070 7.199766 CCTTGCTACACATTTCTTGTTGTTAA 58.800 34.615 0.00 0.00 36.00 2.01
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
116 123 6.837568 ACTTAATTGTAGATACTTCCTCCGGA 59.162 38.462 2.93 2.93 0.00 5.14
117 124 7.052142 ACTTAATTGTAGATACTTCCTCCGG 57.948 40.000 0.00 0.00 0.00 5.14
118 125 7.713750 TGACTTAATTGTAGATACTTCCTCCG 58.286 38.462 0.00 0.00 0.00 4.63
186 193 6.728164 AGAGGTAATATGTATCTGGCACTCAT 59.272 38.462 0.00 0.00 0.00 2.90
187 194 6.077993 AGAGGTAATATGTATCTGGCACTCA 58.922 40.000 0.00 0.00 0.00 3.41
191 198 5.047021 GCTGAGAGGTAATATGTATCTGGCA 60.047 44.000 0.00 0.00 0.00 4.92
196 203 8.244802 ACAATACGCTGAGAGGTAATATGTATC 58.755 37.037 0.00 0.00 0.00 2.24
198 205 7.520451 ACAATACGCTGAGAGGTAATATGTA 57.480 36.000 0.00 0.00 0.00 2.29
199 206 6.406692 ACAATACGCTGAGAGGTAATATGT 57.593 37.500 0.00 0.00 0.00 2.29
200 207 8.029522 ACATACAATACGCTGAGAGGTAATATG 58.970 37.037 0.00 0.00 0.00 1.78
201 208 8.123639 ACATACAATACGCTGAGAGGTAATAT 57.876 34.615 0.00 0.00 0.00 1.28
202 209 7.520451 ACATACAATACGCTGAGAGGTAATA 57.480 36.000 0.00 0.00 0.00 0.98
203 210 6.406692 ACATACAATACGCTGAGAGGTAAT 57.593 37.500 0.00 0.00 0.00 1.89
204 211 5.847111 ACATACAATACGCTGAGAGGTAA 57.153 39.130 0.00 0.00 0.00 2.85
205 212 6.947644 TTACATACAATACGCTGAGAGGTA 57.052 37.500 0.00 0.00 0.00 3.08
206 213 5.847111 TTACATACAATACGCTGAGAGGT 57.153 39.130 0.00 0.00 0.00 3.85
207 214 8.988064 ATAATTACATACAATACGCTGAGAGG 57.012 34.615 0.00 0.00 0.00 3.69
238 245 9.696917 GTTGTGGAAAATGTTCTTTAGATTGAT 57.303 29.630 0.00 0.00 33.92 2.57
239 246 8.690884 TGTTGTGGAAAATGTTCTTTAGATTGA 58.309 29.630 0.00 0.00 33.92 2.57
240 247 8.755018 GTGTTGTGGAAAATGTTCTTTAGATTG 58.245 33.333 0.00 0.00 33.92 2.67
241 248 8.474025 TGTGTTGTGGAAAATGTTCTTTAGATT 58.526 29.630 0.00 0.00 33.92 2.40
242 249 7.920682 GTGTGTTGTGGAAAATGTTCTTTAGAT 59.079 33.333 0.00 0.00 33.92 1.98
243 250 7.254852 GTGTGTTGTGGAAAATGTTCTTTAGA 58.745 34.615 0.00 0.00 33.92 2.10
244 251 6.196353 CGTGTGTTGTGGAAAATGTTCTTTAG 59.804 38.462 0.00 0.00 33.92 1.85
245 252 6.030849 CGTGTGTTGTGGAAAATGTTCTTTA 58.969 36.000 0.00 0.00 33.92 1.85
246 253 4.862018 CGTGTGTTGTGGAAAATGTTCTTT 59.138 37.500 0.00 0.00 33.92 2.52
247 254 4.420168 CGTGTGTTGTGGAAAATGTTCTT 58.580 39.130 0.00 0.00 33.92 2.52
248 255 3.181491 CCGTGTGTTGTGGAAAATGTTCT 60.181 43.478 0.00 0.00 33.92 3.01
249 256 3.112580 CCGTGTGTTGTGGAAAATGTTC 58.887 45.455 0.00 0.00 0.00 3.18
250 257 2.494073 ACCGTGTGTTGTGGAAAATGTT 59.506 40.909 0.00 0.00 0.00 2.71
251 258 2.096248 ACCGTGTGTTGTGGAAAATGT 58.904 42.857 0.00 0.00 0.00 2.71
252 259 2.542824 GGACCGTGTGTTGTGGAAAATG 60.543 50.000 0.00 0.00 0.00 2.32
253 260 1.679153 GGACCGTGTGTTGTGGAAAAT 59.321 47.619 0.00 0.00 0.00 1.82
254 261 1.096416 GGACCGTGTGTTGTGGAAAA 58.904 50.000 0.00 0.00 0.00 2.29
255 262 0.748729 GGGACCGTGTGTTGTGGAAA 60.749 55.000 0.00 0.00 0.00 3.13
256 263 1.153127 GGGACCGTGTGTTGTGGAA 60.153 57.895 0.00 0.00 0.00 3.53
257 264 2.368011 TGGGACCGTGTGTTGTGGA 61.368 57.895 0.00 0.00 0.00 4.02
258 265 2.184167 GTGGGACCGTGTGTTGTGG 61.184 63.158 0.00 0.00 0.00 4.17
259 266 1.153249 AGTGGGACCGTGTGTTGTG 60.153 57.895 0.00 0.00 0.00 3.33
260 267 1.145377 GAGTGGGACCGTGTGTTGT 59.855 57.895 0.00 0.00 0.00 3.32
261 268 1.597027 GGAGTGGGACCGTGTGTTG 60.597 63.158 0.00 0.00 0.00 3.33
262 269 2.826702 GGAGTGGGACCGTGTGTT 59.173 61.111 0.00 0.00 0.00 3.32
263 270 3.612681 CGGAGTGGGACCGTGTGT 61.613 66.667 0.00 0.00 44.57 3.72
269 276 2.419713 GGTCTAAAATCGGAGTGGGACC 60.420 54.545 8.26 8.26 35.85 4.46
270 277 2.419713 GGGTCTAAAATCGGAGTGGGAC 60.420 54.545 0.00 0.00 0.00 4.46
271 278 1.835531 GGGTCTAAAATCGGAGTGGGA 59.164 52.381 0.00 0.00 0.00 4.37
272 279 1.134189 GGGGTCTAAAATCGGAGTGGG 60.134 57.143 0.00 0.00 0.00 4.61
273 280 1.134189 GGGGGTCTAAAATCGGAGTGG 60.134 57.143 0.00 0.00 0.00 4.00
274 281 1.557832 TGGGGGTCTAAAATCGGAGTG 59.442 52.381 0.00 0.00 0.00 3.51
275 282 1.961133 TGGGGGTCTAAAATCGGAGT 58.039 50.000 0.00 0.00 0.00 3.85
276 283 3.054655 TCTTTGGGGGTCTAAAATCGGAG 60.055 47.826 0.00 0.00 0.00 4.63
277 284 2.914278 TCTTTGGGGGTCTAAAATCGGA 59.086 45.455 0.00 0.00 0.00 4.55
278 285 3.359695 TCTTTGGGGGTCTAAAATCGG 57.640 47.619 0.00 0.00 0.00 4.18
279 286 5.715434 TTTTCTTTGGGGGTCTAAAATCG 57.285 39.130 0.00 0.00 0.00 3.34
280 287 7.907389 AGATTTTTCTTTGGGGGTCTAAAATC 58.093 34.615 0.00 0.00 39.22 2.17
281 288 7.512402 TGAGATTTTTCTTTGGGGGTCTAAAAT 59.488 33.333 0.00 0.00 0.00 1.82
282 289 6.841755 TGAGATTTTTCTTTGGGGGTCTAAAA 59.158 34.615 0.00 0.00 0.00 1.52
283 290 6.266786 GTGAGATTTTTCTTTGGGGGTCTAAA 59.733 38.462 0.00 0.00 0.00 1.85
284 291 5.773176 GTGAGATTTTTCTTTGGGGGTCTAA 59.227 40.000 0.00 0.00 0.00 2.10
285 292 5.074515 AGTGAGATTTTTCTTTGGGGGTCTA 59.925 40.000 0.00 0.00 0.00 2.59
286 293 4.140924 AGTGAGATTTTTCTTTGGGGGTCT 60.141 41.667 0.00 0.00 0.00 3.85
287 294 4.152647 AGTGAGATTTTTCTTTGGGGGTC 58.847 43.478 0.00 0.00 0.00 4.46
288 295 4.140924 AGAGTGAGATTTTTCTTTGGGGGT 60.141 41.667 0.00 0.00 0.00 4.95
289 296 4.411013 AGAGTGAGATTTTTCTTTGGGGG 58.589 43.478 0.00 0.00 0.00 5.40
290 297 5.320277 AGAGAGTGAGATTTTTCTTTGGGG 58.680 41.667 0.00 0.00 0.00 4.96
291 298 6.890979 AAGAGAGTGAGATTTTTCTTTGGG 57.109 37.500 0.00 0.00 0.00 4.12
303 310 9.784531 ACTTCAATCAAAATAAAGAGAGTGAGA 57.215 29.630 0.00 0.00 36.61 3.27
355 458 1.676678 GCCCGAGCCTAGATGTCACA 61.677 60.000 0.00 0.00 0.00 3.58
509 613 4.865365 GCTTAGCGAGAGTGTCTACATTTT 59.135 41.667 0.00 0.00 0.00 1.82
510 614 4.158764 AGCTTAGCGAGAGTGTCTACATTT 59.841 41.667 0.00 0.00 0.00 2.32
511 615 3.697045 AGCTTAGCGAGAGTGTCTACATT 59.303 43.478 0.00 0.00 0.00 2.71
512 616 3.283751 AGCTTAGCGAGAGTGTCTACAT 58.716 45.455 0.00 0.00 0.00 2.29
514 618 3.768468 AAGCTTAGCGAGAGTGTCTAC 57.232 47.619 0.00 0.00 0.00 2.59
540 646 7.547722 TCATACATGTAAACGTTCTGCAAGTAT 59.452 33.333 10.14 11.23 33.76 2.12
546 652 7.240674 TCATTTCATACATGTAAACGTTCTGC 58.759 34.615 10.14 0.00 0.00 4.26
568 674 0.898326 GCCAACCGGGGAAACTTCAT 60.898 55.000 6.32 0.00 37.04 2.57
571 677 1.428718 TAGGCCAACCGGGGAAACTT 61.429 55.000 6.32 0.00 42.76 2.66
586 692 1.227380 CCGTCATGTCTGGCTAGGC 60.227 63.158 9.85 9.85 0.00 3.93
587 693 1.227380 GCCGTCATGTCTGGCTAGG 60.227 63.158 15.27 0.00 45.40 3.02
588 694 4.427394 GCCGTCATGTCTGGCTAG 57.573 61.111 15.27 0.00 45.40 3.42
592 698 1.081892 CTTCAAGCCGTCATGTCTGG 58.918 55.000 0.00 0.00 0.00 3.86
593 699 0.445436 GCTTCAAGCCGTCATGTCTG 59.555 55.000 0.00 0.00 34.48 3.51
594 700 0.035317 TGCTTCAAGCCGTCATGTCT 59.965 50.000 7.01 0.00 41.51 3.41
595 701 1.089920 ATGCTTCAAGCCGTCATGTC 58.910 50.000 7.01 0.00 41.51 3.06
596 702 0.806868 CATGCTTCAAGCCGTCATGT 59.193 50.000 7.01 0.00 41.51 3.21
597 703 0.524816 GCATGCTTCAAGCCGTCATG 60.525 55.000 11.37 4.98 41.51 3.07
598 704 0.679002 AGCATGCTTCAAGCCGTCAT 60.679 50.000 16.30 0.00 41.51 3.06
599 705 0.890542 AAGCATGCTTCAAGCCGTCA 60.891 50.000 27.21 0.00 41.51 4.35
600 706 1.063174 CTAAGCATGCTTCAAGCCGTC 59.937 52.381 35.10 0.00 41.51 4.79
601 707 1.089920 CTAAGCATGCTTCAAGCCGT 58.910 50.000 35.10 12.84 41.51 5.68
602 708 0.248377 GCTAAGCATGCTTCAAGCCG 60.248 55.000 35.10 17.85 41.51 5.52
603 709 0.813184 TGCTAAGCATGCTTCAAGCC 59.187 50.000 35.48 24.26 37.02 4.35
604 710 2.163010 TCTTGCTAAGCATGCTTCAAGC 59.837 45.455 35.07 34.45 38.76 4.01
605 711 3.427233 GGTCTTGCTAAGCATGCTTCAAG 60.427 47.826 34.60 34.60 38.76 3.02
666 773 3.748568 CACAAGTTTAGGAGCTCCAACTC 59.251 47.826 33.90 20.11 32.90 3.01
668 775 3.740115 TCACAAGTTTAGGAGCTCCAAC 58.260 45.455 33.90 27.56 38.89 3.77
685 792 1.774110 AACACATGGGCAAGTTCACA 58.226 45.000 0.00 0.00 0.00 3.58
696 803 1.004679 GCTGGCCCAAAACACATGG 60.005 57.895 0.00 0.00 37.71 3.66
700 807 2.736531 CCAGCTGGCCCAAAACAC 59.263 61.111 22.33 0.00 0.00 3.32
740 847 4.007644 GGGCCTTGGCAAAGCACC 62.008 66.667 21.35 15.73 31.51 5.01
770 877 7.726033 ACTAGACCTGATCATATACCCAATC 57.274 40.000 0.00 0.00 0.00 2.67
816 923 2.190841 AAACAAGTCAACCGGGCCG 61.191 57.895 21.46 21.46 0.00 6.13
819 926 0.666374 GGTCAAACAAGTCAACCGGG 59.334 55.000 6.32 0.00 0.00 5.73
890 1091 7.301420 AGAGGAGGGATTTCTTTTCTTTCTTT 58.699 34.615 0.00 0.00 0.00 2.52
891 1092 6.857848 AGAGGAGGGATTTCTTTTCTTTCTT 58.142 36.000 0.00 0.00 0.00 2.52
892 1093 6.461577 AGAGGAGGGATTTCTTTTCTTTCT 57.538 37.500 0.00 0.00 0.00 2.52
893 1094 6.491745 ACAAGAGGAGGGATTTCTTTTCTTTC 59.508 38.462 0.00 0.00 0.00 2.62
907 1122 2.903135 AGAAGACAAGACAAGAGGAGGG 59.097 50.000 0.00 0.00 0.00 4.30
922 1137 1.079057 GAAGGCCCCACGAGAAGAC 60.079 63.158 0.00 0.00 0.00 3.01
923 1138 2.646175 CGAAGGCCCCACGAGAAGA 61.646 63.158 0.00 0.00 0.00 2.87
954 1169 1.815817 AAGTTGGTTGGGATTGCGCC 61.816 55.000 4.18 0.00 0.00 6.53
972 1187 2.509548 CCTCCCTCTCTCTCTCTCTGAA 59.490 54.545 0.00 0.00 0.00 3.02
973 1188 2.126882 CCTCCCTCTCTCTCTCTCTGA 58.873 57.143 0.00 0.00 0.00 3.27
974 1189 1.846439 ACCTCCCTCTCTCTCTCTCTG 59.154 57.143 0.00 0.00 0.00 3.35
975 1190 2.286935 ACCTCCCTCTCTCTCTCTCT 57.713 55.000 0.00 0.00 0.00 3.10
976 1191 3.288092 GAAACCTCCCTCTCTCTCTCTC 58.712 54.545 0.00 0.00 0.00 3.20
1130 1348 4.091939 GAGGTTTCGGGGGTCGGG 62.092 72.222 0.00 0.00 39.77 5.14
1131 1349 4.091939 GGAGGTTTCGGGGGTCGG 62.092 72.222 0.00 0.00 39.77 4.79
1132 1350 3.001406 AGGAGGTTTCGGGGGTCG 61.001 66.667 0.00 0.00 40.90 4.79
1133 1351 2.667108 GGAGGAGGTTTCGGGGGTC 61.667 68.421 0.00 0.00 0.00 4.46
1134 1352 2.609921 GGAGGAGGTTTCGGGGGT 60.610 66.667 0.00 0.00 0.00 4.95
1140 1358 0.913205 GGGAGGAAGGAGGAGGTTTC 59.087 60.000 0.00 0.00 0.00 2.78
1400 1638 7.713704 ACTGAAGAAAGGGGGATAATAATCT 57.286 36.000 0.00 0.00 32.29 2.40
1401 1639 7.998964 TGAACTGAAGAAAGGGGGATAATAATC 59.001 37.037 0.00 0.00 0.00 1.75
1402 1640 7.882755 TGAACTGAAGAAAGGGGGATAATAAT 58.117 34.615 0.00 0.00 0.00 1.28
1403 1641 7.278724 TGAACTGAAGAAAGGGGGATAATAA 57.721 36.000 0.00 0.00 0.00 1.40
1410 1648 1.821136 GCATGAACTGAAGAAAGGGGG 59.179 52.381 0.00 0.00 0.00 5.40
1432 1690 0.317938 CGATACGCCCTTCTTCCTCG 60.318 60.000 0.00 0.00 0.00 4.63
1449 1719 3.407698 ACCTGCACATTGTACAAATCGA 58.592 40.909 13.23 0.00 0.00 3.59
1450 1720 3.829886 ACCTGCACATTGTACAAATCG 57.170 42.857 13.23 6.92 0.00 3.34
1486 1758 5.874895 TCATCAATCACAGAAGCAAGAAG 57.125 39.130 0.00 0.00 0.00 2.85
1500 1772 3.120796 TGCCCCTGCATCATCAATC 57.879 52.632 0.00 0.00 44.23 2.67
1665 2132 2.582052 CAGTGGGTGTGTGGTTACATT 58.418 47.619 0.00 0.00 39.39 2.71
1678 2145 3.626924 GTCAGCGTCCCAGTGGGT 61.627 66.667 27.87 5.55 44.74 4.51
1697 2164 3.689649 ACAACTCAGAACAGGACACAAAC 59.310 43.478 0.00 0.00 0.00 2.93
1756 2228 5.801350 TCAAGTTCCGCAATATTTGAGAG 57.199 39.130 0.00 0.00 31.66 3.20
1759 2231 5.471797 TCAGTTCAAGTTCCGCAATATTTGA 59.528 36.000 0.00 0.00 0.00 2.69
1929 2412 5.547465 TCCAACTGTCATTTCAACTCGTAT 58.453 37.500 0.00 0.00 0.00 3.06
1932 2483 4.058124 TCTCCAACTGTCATTTCAACTCG 58.942 43.478 0.00 0.00 0.00 4.18
2140 2693 5.696270 CCTTAAACTTTGCATCTTCCAAACC 59.304 40.000 0.00 0.00 0.00 3.27
2183 2747 8.795513 CACAATGATGCCAATTATATCAAGGTA 58.204 33.333 0.00 0.00 34.80 3.08
2184 2748 7.663827 CACAATGATGCCAATTATATCAAGGT 58.336 34.615 0.00 0.00 34.80 3.50
2185 2749 6.588756 GCACAATGATGCCAATTATATCAAGG 59.411 38.462 0.00 0.00 39.86 3.61
2186 2750 7.576750 GCACAATGATGCCAATTATATCAAG 57.423 36.000 0.00 0.00 39.86 3.02
2266 2843 3.004752 AGGCATCAGGGTGAATGTTAC 57.995 47.619 0.00 0.00 0.00 2.50
2321 2903 6.095440 GCTTCCCTACAATGTTCATGTTACAT 59.905 38.462 9.44 9.44 37.82 2.29
2449 3076 4.857588 AGTATAGCGTTTGTGAAGACTTCG 59.142 41.667 10.56 0.00 0.00 3.79
2528 3155 7.480810 ACACTGAACAGAAGAAATTTGGTTAC 58.519 34.615 8.87 0.00 0.00 2.50
2560 3187 6.650120 ACAACTTAAGAACACAGAGGAGAAA 58.350 36.000 10.09 0.00 0.00 2.52
2561 3188 6.235231 ACAACTTAAGAACACAGAGGAGAA 57.765 37.500 10.09 0.00 0.00 2.87
2571 3198 5.104693 TCAGAGTGGGAACAACTTAAGAACA 60.105 40.000 10.09 0.00 46.06 3.18
2710 3337 0.250901 AGGAAGAATGCGCACCTTGT 60.251 50.000 25.56 9.34 0.00 3.16
2779 3452 7.255977 GGATGATATTAGCAGACACCAGTAGAA 60.256 40.741 0.00 0.00 0.00 2.10
2791 3466 6.376581 GGAATTTCAGGGGATGATATTAGCAG 59.623 42.308 0.00 0.00 39.00 4.24
2802 3477 7.129504 AGTCTGTATTAAGGAATTTCAGGGGAT 59.870 37.037 0.00 0.00 31.97 3.85
2918 3595 9.476202 GCTTCTGTGTTGTTTCCTTTAATTAAT 57.524 29.630 0.00 0.00 0.00 1.40
2921 3598 7.112452 AGCTTCTGTGTTGTTTCCTTTAATT 57.888 32.000 0.00 0.00 0.00 1.40
2943 3647 4.913924 CAGCTACTGTTCATTTGTTCAAGC 59.086 41.667 0.00 0.00 0.00 4.01
2975 3679 9.559958 CAATCAAATAATGTACCAGTTCAACTC 57.440 33.333 0.00 0.00 0.00 3.01
2977 3681 7.275560 GCCAATCAAATAATGTACCAGTTCAAC 59.724 37.037 0.00 0.00 0.00 3.18
2988 3692 8.796475 GTCATACCTATGCCAATCAAATAATGT 58.204 33.333 0.00 0.00 33.76 2.71
3008 3712 6.597672 TCATCAAAACATACCTGGTGTCATAC 59.402 38.462 10.23 0.00 0.00 2.39
3009 3713 6.716284 TCATCAAAACATACCTGGTGTCATA 58.284 36.000 10.23 0.00 0.00 2.15
3010 3714 5.569355 TCATCAAAACATACCTGGTGTCAT 58.431 37.500 10.23 0.00 0.00 3.06
3011 3715 4.979335 TCATCAAAACATACCTGGTGTCA 58.021 39.130 10.23 0.00 0.00 3.58
3013 3717 5.183713 CACATCATCAAAACATACCTGGTGT 59.816 40.000 10.23 0.00 0.00 4.16
3015 3719 4.158394 GCACATCATCAAAACATACCTGGT 59.842 41.667 4.05 4.05 0.00 4.00
3016 3720 4.400251 AGCACATCATCAAAACATACCTGG 59.600 41.667 0.00 0.00 0.00 4.45
3018 3722 6.319658 CCTTAGCACATCATCAAAACATACCT 59.680 38.462 0.00 0.00 0.00 3.08
3019 3723 6.095440 ACCTTAGCACATCATCAAAACATACC 59.905 38.462 0.00 0.00 0.00 2.73
3020 3724 7.088589 ACCTTAGCACATCATCAAAACATAC 57.911 36.000 0.00 0.00 0.00 2.39
3022 3726 6.209192 TGAACCTTAGCACATCATCAAAACAT 59.791 34.615 0.00 0.00 0.00 2.71
3023 3727 5.534278 TGAACCTTAGCACATCATCAAAACA 59.466 36.000 0.00 0.00 0.00 2.83
3024 3728 6.012658 TGAACCTTAGCACATCATCAAAAC 57.987 37.500 0.00 0.00 0.00 2.43
3025 3729 6.647334 TTGAACCTTAGCACATCATCAAAA 57.353 33.333 0.00 0.00 0.00 2.44
3026 3730 6.647334 TTTGAACCTTAGCACATCATCAAA 57.353 33.333 0.00 0.00 34.30 2.69
3027 3731 6.839124 ATTTGAACCTTAGCACATCATCAA 57.161 33.333 0.00 0.00 0.00 2.57
3056 3795 9.357652 ACGAAGTTATATGTAAAGCGAAGTTTA 57.642 29.630 0.00 0.00 37.78 2.01
3058 3797 7.823149 ACGAAGTTATATGTAAAGCGAAGTT 57.177 32.000 0.00 0.00 37.78 2.66
3082 3821 7.728148 ACATCAAACCGTATGTACCACATATA 58.272 34.615 2.57 0.00 42.39 0.86
3085 3824 4.839121 ACATCAAACCGTATGTACCACAT 58.161 39.130 0.00 0.00 42.35 3.21
3098 3837 9.906660 TTATTGTGAGATTTACAACATCAAACC 57.093 29.630 0.00 0.00 40.47 3.27
3100 3839 9.906660 GGTTATTGTGAGATTTACAACATCAAA 57.093 29.630 0.00 0.00 40.47 2.69
3114 3892 5.693769 CCTAAGGGAAGGTTATTGTGAGA 57.306 43.478 0.00 0.00 33.58 3.27
3131 3911 1.743394 GGTCGAAATTGCCCACCTAAG 59.257 52.381 0.00 0.00 0.00 2.18
3198 3978 1.798735 CACTGCTTCCTTGATGGCG 59.201 57.895 0.00 0.00 35.26 5.69
3216 3996 0.746204 GCTCCTTGAGGTAGGCTTGC 60.746 60.000 0.00 0.00 35.15 4.01
3432 4221 4.696877 TGCAACAGATAATCACAGGTCAAG 59.303 41.667 0.00 0.00 0.00 3.02
3459 4248 4.641396 TGAAAATGACCATCCTATAGGCG 58.359 43.478 14.50 7.44 34.44 5.52
3469 4258 4.018960 AGACCTAGCACTGAAAATGACCAT 60.019 41.667 0.00 0.00 0.00 3.55
3471 4260 3.935828 GAGACCTAGCACTGAAAATGACC 59.064 47.826 0.00 0.00 0.00 4.02
3488 4277 5.167303 AGTTCCACCAAATCTTAGAGACC 57.833 43.478 0.00 0.00 0.00 3.85
3501 4290 0.840617 TGTACAGCCAAGTTCCACCA 59.159 50.000 0.00 0.00 0.00 4.17
3504 4293 2.171659 TCAAGTGTACAGCCAAGTTCCA 59.828 45.455 0.00 0.00 0.00 3.53
3520 4309 7.665559 ACATTATCACACAAACCACTATCAAGT 59.334 33.333 0.00 0.00 35.91 3.16
3521 4310 8.044060 ACATTATCACACAAACCACTATCAAG 57.956 34.615 0.00 0.00 0.00 3.02
3522 4311 7.994425 ACATTATCACACAAACCACTATCAA 57.006 32.000 0.00 0.00 0.00 2.57
3542 4331 8.253113 GGACCAAACAAATGATCAATCTACATT 58.747 33.333 0.00 0.00 36.07 2.71
3543 4332 7.396907 TGGACCAAACAAATGATCAATCTACAT 59.603 33.333 0.00 0.00 0.00 2.29
3564 4358 9.185680 AGTGGAAAAATGTATTATTACTGGACC 57.814 33.333 0.00 0.00 0.00 4.46
3579 4373 6.746822 GCAACAAAAGGAAAAGTGGAAAAATG 59.253 34.615 0.00 0.00 0.00 2.32
3580 4374 6.127758 GGCAACAAAAGGAAAAGTGGAAAAAT 60.128 34.615 0.00 0.00 0.00 1.82
3581 4375 5.182190 GGCAACAAAAGGAAAAGTGGAAAAA 59.818 36.000 0.00 0.00 0.00 1.94
3627 4423 4.338118 GTCTTCCAAACAGACCATGAAACA 59.662 41.667 0.00 0.00 35.53 2.83
3629 4425 4.531854 TGTCTTCCAAACAGACCATGAAA 58.468 39.130 0.00 0.00 40.12 2.69
3658 4454 7.824779 ACTTCAAACATAGGAATCCTTGTCTAC 59.175 37.037 7.30 0.00 34.61 2.59
3667 4463 5.586643 GGACCTCACTTCAAACATAGGAATC 59.413 44.000 0.00 0.00 0.00 2.52
3673 4469 3.556213 CGTGGGACCTCACTTCAAACATA 60.556 47.826 10.28 0.00 35.63 2.29
3683 4479 1.067212 CTACATAGCGTGGGACCTCAC 59.933 57.143 0.00 0.00 0.00 3.51
3684 4480 1.064240 TCTACATAGCGTGGGACCTCA 60.064 52.381 0.00 0.00 0.00 3.86
3694 4490 2.860735 GCTCACAGGTTTCTACATAGCG 59.139 50.000 0.00 0.00 0.00 4.26
3695 4491 3.861840 TGCTCACAGGTTTCTACATAGC 58.138 45.455 0.00 0.00 0.00 2.97
3696 4492 5.482908 AGTTGCTCACAGGTTTCTACATAG 58.517 41.667 0.00 0.00 0.00 2.23
3707 4503 6.820656 AGAGATATAACAAAGTTGCTCACAGG 59.179 38.462 0.00 0.00 0.00 4.00
3708 4504 7.840342 AGAGATATAACAAAGTTGCTCACAG 57.160 36.000 0.00 0.00 0.00 3.66
3851 4688 2.363788 TGGTCACAATACTCGTCAGC 57.636 50.000 0.00 0.00 0.00 4.26
3942 4779 7.539710 TGCTCGTGTCGTTTATATCCATATTAC 59.460 37.037 0.00 0.00 0.00 1.89
3943 4780 7.595604 TGCTCGTGTCGTTTATATCCATATTA 58.404 34.615 0.00 0.00 0.00 0.98
3946 4783 5.441709 TGCTCGTGTCGTTTATATCCATA 57.558 39.130 0.00 0.00 0.00 2.74
3950 4789 6.129168 CCAGTTATGCTCGTGTCGTTTATATC 60.129 42.308 0.00 0.00 0.00 1.63
3952 4791 5.038683 CCAGTTATGCTCGTGTCGTTTATA 58.961 41.667 0.00 0.00 0.00 0.98
3959 4798 0.249398 ACCCCAGTTATGCTCGTGTC 59.751 55.000 0.00 0.00 0.00 3.67
3974 4813 2.894765 GAGAAGGAGCTATCACTACCCC 59.105 54.545 0.00 0.00 0.00 4.95
3975 4814 3.572255 CAGAGAAGGAGCTATCACTACCC 59.428 52.174 0.00 0.00 0.00 3.69
4002 4845 1.609061 CCATCTGTGCGTTGGAACTCT 60.609 52.381 0.00 0.00 34.93 3.24
4006 4849 1.073025 AGCCATCTGTGCGTTGGAA 59.927 52.632 0.00 0.00 34.93 3.53
4016 4860 3.806521 GCATACAAGACTACAGCCATCTG 59.193 47.826 0.00 0.00 45.71 2.90
4026 4870 6.308015 ACCTACCAAATGCATACAAGACTA 57.692 37.500 0.00 0.00 0.00 2.59
4028 4872 5.897377 AACCTACCAAATGCATACAAGAC 57.103 39.130 0.00 0.00 0.00 3.01
4029 4873 6.719370 AGAAAACCTACCAAATGCATACAAGA 59.281 34.615 0.00 0.00 0.00 3.02
4030 4874 6.924111 AGAAAACCTACCAAATGCATACAAG 58.076 36.000 0.00 0.00 0.00 3.16
4033 4877 8.051901 AGTAAGAAAACCTACCAAATGCATAC 57.948 34.615 0.00 0.00 0.00 2.39
4038 4882 7.923414 AGCTAGTAAGAAAACCTACCAAATG 57.077 36.000 0.00 0.00 0.00 2.32
4072 4916 3.828875 TTGCCGACCTTCCAAAATTTT 57.171 38.095 0.00 0.00 0.00 1.82
4084 4928 0.243636 CAATCCAACCTTTGCCGACC 59.756 55.000 0.00 0.00 0.00 4.79
4090 4934 3.967332 ATTCAGGCAATCCAACCTTTG 57.033 42.857 0.00 0.00 32.56 2.77
4093 4937 3.094572 CTCAATTCAGGCAATCCAACCT 58.905 45.455 0.00 0.00 36.45 3.50
4099 4943 6.312180 GGACAAAATTCTCAATTCAGGCAATC 59.688 38.462 0.00 0.00 0.00 2.67
4106 4950 6.482973 GCCAAAAGGACAAAATTCTCAATTCA 59.517 34.615 0.00 0.00 0.00 2.57
4107 4951 6.073058 GGCCAAAAGGACAAAATTCTCAATTC 60.073 38.462 0.00 0.00 0.00 2.17
4108 4952 5.764686 GGCCAAAAGGACAAAATTCTCAATT 59.235 36.000 0.00 0.00 0.00 2.32
4109 4953 5.163216 TGGCCAAAAGGACAAAATTCTCAAT 60.163 36.000 0.61 0.00 0.00 2.57
4110 4954 4.163078 TGGCCAAAAGGACAAAATTCTCAA 59.837 37.500 0.61 0.00 0.00 3.02
4111 4955 3.708631 TGGCCAAAAGGACAAAATTCTCA 59.291 39.130 0.61 0.00 0.00 3.27
4112 4956 4.335400 TGGCCAAAAGGACAAAATTCTC 57.665 40.909 0.61 0.00 0.00 2.87
4119 4963 2.693074 GTTCTCTTGGCCAAAAGGACAA 59.307 45.455 23.26 6.36 0.00 3.18
4123 4967 1.703411 TGGTTCTCTTGGCCAAAAGG 58.297 50.000 20.91 12.18 0.00 3.11
4146 4990 2.665537 GACAGCTCAGACTCAAACATCG 59.334 50.000 0.00 0.00 0.00 3.84
4168 5012 7.468922 GTCTTTTGGACAAGAAGAAAAATGG 57.531 36.000 9.56 0.00 43.94 3.16
4183 5027 3.243359 AGCAAGGGATTGTCTTTTGGA 57.757 42.857 0.00 0.00 0.00 3.53
4187 5031 4.098914 TGTGTAGCAAGGGATTGTCTTT 57.901 40.909 0.00 0.00 0.00 2.52
4189 5033 4.307032 AATGTGTAGCAAGGGATTGTCT 57.693 40.909 0.00 0.00 0.00 3.41
4239 5087 2.284190 GAAAGCTCCTCCATTCGGAAG 58.716 52.381 0.00 0.00 42.21 3.46
4242 5090 2.682893 CGAAAGCTCCTCCATTCGG 58.317 57.895 7.86 0.00 40.55 4.30


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.