Multiple sequence alignment - TraesCS1A01G011200

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G011200 chr1A 100.000 3328 0 0 3787 7114 6572535 6569208 0.000000e+00 6146.0
1 TraesCS1A01G011200 chr1A 100.000 1623 0 0 1 1623 6576321 6574699 0.000000e+00 2998.0
2 TraesCS1A01G011200 chr1A 100.000 1537 0 0 1917 3453 6574405 6572869 0.000000e+00 2839.0
3 TraesCS1A01G011200 chr1A 88.325 1182 90 24 209 1371 6636374 6635222 0.000000e+00 1375.0
4 TraesCS1A01G011200 chr1A 93.127 742 39 8 648 1381 6640820 6640083 0.000000e+00 1077.0
5 TraesCS1A01G011200 chr1A 82.185 595 75 21 303 886 6553535 6552961 3.860000e-132 483.0
6 TraesCS1A01G011200 chr1A 82.017 595 76 21 303 886 6539963 6539389 1.800000e-130 477.0
7 TraesCS1A01G011200 chr1A 86.404 456 39 11 65 500 6641468 6641016 1.800000e-130 477.0
8 TraesCS1A01G011200 chr1A 93.701 254 14 2 2055 2307 6640064 6639812 5.210000e-101 379.0
9 TraesCS1A01G011200 chr1A 94.397 232 10 1 1395 1623 80300188 80300419 3.160000e-93 353.0
10 TraesCS1A01G011200 chr1A 86.765 204 17 2 939 1141 6552939 6552745 1.200000e-52 219.0
11 TraesCS1A01G011200 chr1A 83.700 227 31 4 6662 6882 5564057 5563831 7.230000e-50 209.0
12 TraesCS1A01G011200 chr1A 85.027 187 6 2 1 166 6636568 6636383 3.410000e-38 171.0
13 TraesCS1A01G011200 chr1A 88.591 149 4 4 1917 2052 80300550 80300698 1.230000e-37 169.0
14 TraesCS1A01G011200 chr1A 96.364 55 1 1 1 55 6641514 6641461 9.830000e-14 89.8
15 TraesCS1A01G011200 chr1B 92.995 2484 114 26 3837 6282 17813381 17810920 0.000000e+00 3568.0
16 TraesCS1A01G011200 chr1B 95.040 1129 29 10 4427 5548 8221966 8223074 0.000000e+00 1749.0
17 TraesCS1A01G011200 chr1B 84.695 1444 135 27 2085 3453 8219077 8220509 0.000000e+00 1363.0
18 TraesCS1A01G011200 chr1B 85.339 1371 118 34 2085 3378 17815323 17813959 0.000000e+00 1341.0
19 TraesCS1A01G011200 chr1B 87.115 1234 88 33 3788 4977 8174033 8172827 0.000000e+00 1332.0
20 TraesCS1A01G011200 chr1B 86.333 1178 93 27 225 1369 17816547 17815405 0.000000e+00 1221.0
21 TraesCS1A01G011200 chr1B 91.173 827 56 10 5649 6463 8170673 8169852 0.000000e+00 1107.0
22 TraesCS1A01G011200 chr1B 83.333 768 72 26 1 734 660485537 660486282 0.000000e+00 658.0
23 TraesCS1A01G011200 chr1B 87.738 473 39 13 878 1348 8218512 8218967 1.050000e-147 534.0
24 TraesCS1A01G011200 chr1B 91.842 380 25 3 5278 5654 8171132 8170756 6.320000e-145 525.0
25 TraesCS1A01G011200 chr1B 87.097 465 30 9 6656 7114 8169667 8169227 3.830000e-137 499.0
26 TraesCS1A01G011200 chr1B 85.682 440 52 7 940 1369 7643503 7643065 3.030000e-123 453.0
27 TraesCS1A01G011200 chr1B 90.294 340 29 2 3118 3453 8174421 8174082 6.550000e-120 442.0
28 TraesCS1A01G011200 chr1B 94.397 232 10 1 1395 1623 612990292 612990523 3.160000e-93 353.0
29 TraesCS1A01G011200 chr1B 85.185 324 40 7 1029 1348 5708925 5709244 6.880000e-85 326.0
30 TraesCS1A01G011200 chr1B 95.238 189 9 0 3838 4026 8221779 8221967 4.170000e-77 300.0
31 TraesCS1A01G011200 chr1B 87.854 247 26 4 4626 4869 8156407 8156162 3.250000e-73 287.0
32 TraesCS1A01G011200 chr1B 83.217 286 42 4 2057 2337 7643024 7642740 2.550000e-64 257.0
33 TraesCS1A01G011200 chr1B 89.286 140 13 1 5034 5173 8171279 8171142 2.640000e-39 174.0
34 TraesCS1A01G011200 chr1B 90.476 105 10 0 2359 2463 6401756 6401860 9.620000e-29 139.0
35 TraesCS1A01G011200 chr1B 84.076 157 9 7 1 153 17816813 17816669 3.460000e-28 137.0
36 TraesCS1A01G011200 chr1B 85.714 126 18 0 1199 1324 6395807 6395932 4.480000e-27 134.0
37 TraesCS1A01G011200 chr1B 87.500 72 6 2 4962 5032 8171385 8171316 5.920000e-11 80.5
38 TraesCS1A01G011200 chr1B 89.091 55 6 0 2367 2421 6402312 6402366 1.280000e-07 69.4
39 TraesCS1A01G011200 chr1D 95.316 1409 36 7 2055 3453 5409526 5408138 0.000000e+00 2209.0
40 TraesCS1A01G011200 chr1D 87.276 1784 152 48 3788 5524 5407865 5406110 0.000000e+00 1967.0
41 TraesCS1A01G011200 chr1D 88.946 1357 92 21 65 1381 5410883 5409545 0.000000e+00 1622.0
42 TraesCS1A01G011200 chr1D 83.363 565 66 16 3960 4510 5354316 5353766 1.380000e-136 497.0
43 TraesCS1A01G011200 chr1D 84.970 499 60 8 5897 6393 5405829 5405344 6.410000e-135 492.0
44 TraesCS1A01G011200 chr1D 93.433 335 11 8 4106 4436 5393403 5393076 2.980000e-133 486.0
45 TraesCS1A01G011200 chr1D 92.771 332 22 2 933 1264 8181009 8181338 4.990000e-131 479.0
46 TraesCS1A01G011200 chr1D 86.869 297 38 1 940 1236 5013945 5013650 1.480000e-86 331.0
47 TraesCS1A01G011200 chr1D 85.036 274 33 6 4626 4892 5353380 5353108 9.090000e-69 272.0
48 TraesCS1A01G011200 chr1D 80.169 237 13 10 6840 7071 5404857 5404650 5.750000e-31 147.0
49 TraesCS1A01G011200 chr1D 83.766 154 17 7 6458 6607 427333139 427333288 9.620000e-29 139.0
50 TraesCS1A01G011200 chr1D 90.667 75 6 1 6057 6131 5398991 5399064 1.630000e-16 99.0
51 TraesCS1A01G011200 chr1D 84.694 98 13 2 2104 2199 5013445 5013348 5.870000e-16 97.1
52 TraesCS1A01G011200 chr1D 96.364 55 1 1 1 55 5410929 5410876 9.830000e-14 89.8
53 TraesCS1A01G011200 chr1D 92.683 41 3 0 7074 7114 4356044 4356004 7.710000e-05 60.2
54 TraesCS1A01G011200 chr1D 100.000 29 0 0 7086 7114 5404652 5404624 4.000000e-03 54.7
55 TraesCS1A01G011200 chr4B 83.745 769 68 29 1 734 87231721 87232467 0.000000e+00 675.0
56 TraesCS1A01G011200 chr4B 95.122 41 0 2 6458 6496 50930073 50930113 5.960000e-06 63.9
57 TraesCS1A01G011200 chrUn 82.373 573 70 21 303 864 333572688 333572136 3.000000e-128 470.0
58 TraesCS1A01G011200 chrUn 82.709 561 66 21 303 852 333618457 333618997 3.000000e-128 470.0
59 TraesCS1A01G011200 chrUn 82.709 561 66 21 303 852 390382157 390382697 3.000000e-128 470.0
60 TraesCS1A01G011200 chrUn 94.397 232 10 1 1395 1623 311863699 311863468 3.160000e-93 353.0
61 TraesCS1A01G011200 chr3A 95.528 246 8 1 1381 1623 131766456 131766211 2.410000e-104 390.0
62 TraesCS1A01G011200 chr3A 97.238 181 5 0 1420 1600 8935297 8935117 2.490000e-79 307.0
63 TraesCS1A01G011200 chr3A 90.306 196 13 5 6452 6644 644672533 644672725 1.180000e-62 252.0
64 TraesCS1A01G011200 chr6A 94.397 232 10 1 1395 1623 13664042 13663811 3.160000e-93 353.0
65 TraesCS1A01G011200 chr6A 97.015 134 4 0 1919 2052 284811265 284811398 7.180000e-55 226.0
66 TraesCS1A01G011200 chr6A 88.158 152 5 4 1917 2055 13663680 13663529 1.230000e-37 169.0
67 TraesCS1A01G011200 chr3D 94.421 233 8 3 1395 1623 543101250 543101481 3.160000e-93 353.0
68 TraesCS1A01G011200 chr3D 91.444 187 11 4 6458 6640 104088422 104088237 1.180000e-62 252.0
69 TraesCS1A01G011200 chr3D 95.620 137 5 1 1917 2052 543101830 543101966 1.200000e-52 219.0
70 TraesCS1A01G011200 chr3D 82.759 174 26 3 6459 6629 11603636 11603464 1.240000e-32 152.0
71 TraesCS1A01G011200 chr3B 94.397 232 10 1 1395 1623 302357941 302357710 3.160000e-93 353.0
72 TraesCS1A01G011200 chr3B 94.397 232 10 1 1395 1623 327086490 327086259 3.160000e-93 353.0
73 TraesCS1A01G011200 chr3B 94.397 232 10 1 1395 1623 405414657 405414888 3.160000e-93 353.0
74 TraesCS1A01G011200 chr7A 80.453 486 60 13 2233 2688 692235591 692235111 8.840000e-89 339.0
75 TraesCS1A01G011200 chr7A 89.474 190 15 4 6458 6644 448488379 448488566 1.190000e-57 235.0
76 TraesCS1A01G011200 chr7A 94.286 140 6 2 1917 2055 218399741 218399603 5.590000e-51 213.0
77 TraesCS1A01G011200 chr5D 91.176 136 12 0 1917 2052 480492586 480492721 1.220000e-42 185.0
78 TraesCS1A01G011200 chr5D 77.297 185 38 4 6455 6636 448584600 448584783 9.760000e-19 106.0
79 TraesCS1A01G011200 chr6B 90.400 125 12 0 1917 2041 707319111 707319235 1.590000e-36 165.0
80 TraesCS1A01G011200 chr6B 95.833 96 4 0 1960 2055 390044655 390044560 9.550000e-34 156.0
81 TraesCS1A01G011200 chr2D 87.500 152 6 6 1917 2055 533795963 533795812 5.710000e-36 163.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G011200 chr1A 6569208 6576321 7113 True 3994.333333 6146 100.000000 1 7114 3 chr1A.!!$R4 7113
1 TraesCS1A01G011200 chr1A 6635222 6641514 6292 True 594.800000 1375 90.491333 1 2307 6 chr1A.!!$R5 2306
2 TraesCS1A01G011200 chr1A 6539389 6539963 574 True 477.000000 477 82.017000 303 886 1 chr1A.!!$R2 583
3 TraesCS1A01G011200 chr1A 6552745 6553535 790 True 351.000000 483 84.475000 303 1141 2 chr1A.!!$R3 838
4 TraesCS1A01G011200 chr1A 80300188 80300698 510 False 261.000000 353 91.494000 1395 2052 2 chr1A.!!$F1 657
5 TraesCS1A01G011200 chr1B 17810920 17816813 5893 True 1566.750000 3568 87.185750 1 6282 4 chr1B.!!$R4 6281
6 TraesCS1A01G011200 chr1B 8218512 8223074 4562 False 986.500000 1749 90.677750 878 5548 4 chr1B.!!$F6 4670
7 TraesCS1A01G011200 chr1B 660485537 660486282 745 False 658.000000 658 83.333000 1 734 1 chr1B.!!$F4 733
8 TraesCS1A01G011200 chr1B 8169227 8174421 5194 True 594.214286 1332 89.186714 3118 7114 7 chr1B.!!$R3 3996
9 TraesCS1A01G011200 chr1B 7642740 7643503 763 True 355.000000 453 84.449500 940 2337 2 chr1B.!!$R2 1397
10 TraesCS1A01G011200 chr1D 5404624 5410929 6305 True 940.214286 2209 90.434429 1 7114 7 chr1D.!!$R5 7113
11 TraesCS1A01G011200 chr1D 5353108 5354316 1208 True 384.500000 497 84.199500 3960 4892 2 chr1D.!!$R4 932
12 TraesCS1A01G011200 chr1D 5013348 5013945 597 True 214.050000 331 85.781500 940 2199 2 chr1D.!!$R3 1259
13 TraesCS1A01G011200 chr4B 87231721 87232467 746 False 675.000000 675 83.745000 1 734 1 chr4B.!!$F2 733
14 TraesCS1A01G011200 chrUn 333572136 333572688 552 True 470.000000 470 82.373000 303 864 1 chrUn.!!$R2 561
15 TraesCS1A01G011200 chrUn 333618457 333618997 540 False 470.000000 470 82.709000 303 852 1 chrUn.!!$F1 549
16 TraesCS1A01G011200 chrUn 390382157 390382697 540 False 470.000000 470 82.709000 303 852 1 chrUn.!!$F2 549
17 TraesCS1A01G011200 chr6A 13663529 13664042 513 True 261.000000 353 91.277500 1395 2055 2 chr6A.!!$R1 660
18 TraesCS1A01G011200 chr3D 543101250 543101966 716 False 286.000000 353 95.020500 1395 2052 2 chr3D.!!$F1 657

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
386 462 0.321564 TGCAGACGACAATCCTTGGG 60.322 55.0 0.00 0.00 34.12 4.12 F
1298 1574 0.312416 GCCGCATCAGATAGACGACT 59.688 55.0 0.00 0.00 0.00 4.18 F
2190 2539 0.174389 CCATCTGCTACAGACACGCT 59.826 55.0 0.00 0.00 43.63 5.07 F
2326 7613 0.541392 CTGGTGGGATCGATTGTCCA 59.459 55.0 0.00 5.68 37.49 4.02 F
3307 8693 1.208706 TTGGTGTCTGTCTTGGTGGA 58.791 50.0 0.00 0.00 0.00 4.02 F
3435 8824 0.451628 CAGACGATGCGCAACAACAG 60.452 55.0 17.11 0.69 0.00 3.16 F
3806 10091 0.807496 GCTTCTTGCCCACTGCTTAG 59.193 55.0 0.00 0.00 42.00 2.18 F
5223 13329 0.966875 TCACATGCCATGGTTCCAGC 60.967 55.0 14.67 0.00 33.60 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1518 1797 0.179018 CCTAAGGCGGGAAGAATGGG 60.179 60.000 0.00 0.00 0.00 4.00 R
2468 7777 0.252239 TCTCCAGTGCCCAAGCTAGA 60.252 55.000 0.00 0.00 40.80 2.43 R
3144 8512 0.958091 AATGGTGCTGCAGCGTTAAA 59.042 45.000 31.10 16.78 45.83 1.52 R
3426 8815 1.000938 CCTCTGCCTTTCTGTTGTTGC 60.001 52.381 0.00 0.00 0.00 4.17 R
4478 10773 3.880047 TGGTTGGGTGAGAGTATTACG 57.120 47.619 0.00 0.00 0.00 3.18 R
5052 13155 4.272504 CAGAAGACGTGAAAAGCCTTGTTA 59.727 41.667 0.00 0.00 0.00 2.41 R
5557 13683 1.826385 ACCCAACTTGCAGACATAGC 58.174 50.000 0.00 0.00 0.00 2.97 R
6607 14862 0.101219 CAGCACCATCGTCGATGAGA 59.899 55.000 31.82 2.06 42.09 3.27 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
22 23 2.388232 CGCCGAGTAGGTTGTTGCC 61.388 63.158 0.00 0.00 43.70 4.52
124 128 0.532862 CTCCGGCCGTCTGCAATTAT 60.533 55.000 26.12 0.00 43.89 1.28
208 240 1.921887 CCGTCAATTAGCGCTCGTTAA 59.078 47.619 16.34 1.93 0.00 2.01
214 246 6.459330 GTCAATTAGCGCTCGTTAATATAGC 58.541 40.000 16.34 0.00 32.57 2.97
216 248 6.866770 TCAATTAGCGCTCGTTAATATAGCTT 59.133 34.615 16.34 0.00 32.57 3.74
218 250 4.238761 AGCGCTCGTTAATATAGCTTCA 57.761 40.909 2.64 0.00 34.03 3.02
228 282 6.153680 CGTTAATATAGCTTCAGGGAGGAGAT 59.846 42.308 0.00 0.00 0.00 2.75
237 301 5.365021 TTCAGGGAGGAGATGAAATTCTC 57.635 43.478 0.00 0.00 41.21 2.87
264 331 8.788806 TGTCTGGTATTAGTACAAAATTTGTGG 58.211 33.333 20.40 0.00 45.03 4.17
295 366 7.563924 TCCTGTACTTTGCCTCTACTTGTATAT 59.436 37.037 0.00 0.00 0.00 0.86
313 384 8.893219 TTGTATATGGATATATTGCTAGCTGC 57.107 34.615 17.23 0.00 35.23 5.25
325 396 1.950828 CTAGCTGCATTGGTGGAGAG 58.049 55.000 1.02 0.00 45.73 3.20
345 416 2.135933 GATCGCTATTTCTTCGTGGGG 58.864 52.381 0.00 0.00 0.00 4.96
379 455 3.430929 GGAGGATTAGTGCAGACGACAAT 60.431 47.826 0.00 0.00 0.00 2.71
386 462 0.321564 TGCAGACGACAATCCTTGGG 60.322 55.000 0.00 0.00 34.12 4.12
390 466 3.347216 CAGACGACAATCCTTGGGAAAT 58.653 45.455 0.00 0.00 34.34 2.17
392 468 4.218417 CAGACGACAATCCTTGGGAAATTT 59.782 41.667 0.00 0.00 34.34 1.82
393 469 4.459337 AGACGACAATCCTTGGGAAATTTC 59.541 41.667 9.83 9.83 34.34 2.17
394 470 4.148838 ACGACAATCCTTGGGAAATTTCA 58.851 39.130 19.49 0.00 34.34 2.69
395 471 4.218417 ACGACAATCCTTGGGAAATTTCAG 59.782 41.667 19.49 8.54 34.34 3.02
396 472 4.218417 CGACAATCCTTGGGAAATTTCAGT 59.782 41.667 19.49 3.96 34.34 3.41
398 474 4.248058 CAATCCTTGGGAAATTTCAGTGC 58.752 43.478 19.49 2.31 34.34 4.40
399 475 2.956132 TCCTTGGGAAATTTCAGTGCA 58.044 42.857 19.49 0.00 0.00 4.57
400 476 3.509442 TCCTTGGGAAATTTCAGTGCAT 58.491 40.909 19.49 0.00 0.00 3.96
402 478 4.347583 TCCTTGGGAAATTTCAGTGCATTT 59.652 37.500 19.49 0.98 0.00 2.32
403 479 5.541868 TCCTTGGGAAATTTCAGTGCATTTA 59.458 36.000 19.49 0.00 0.00 1.40
438 521 2.149578 CTCTGTTTGCAGGTTCAGAGG 58.850 52.381 21.06 10.35 45.58 3.69
448 531 3.807209 GCAGGTTCAGAGGCTACTTTGAA 60.807 47.826 0.00 0.00 43.23 2.69
491 574 4.072131 TGAAGTTCCACTGGATTAGCAAC 58.928 43.478 0.00 0.00 0.00 4.17
506 756 8.836413 TGGATTAGCAACTGCATTAAATAGTAC 58.164 33.333 4.22 0.00 45.16 2.73
511 761 8.964476 AGCAACTGCATTAAATAGTACATACT 57.036 30.769 4.22 0.00 45.16 2.12
561 811 4.264253 TCCAGTGGATTAGCAAAGTGATG 58.736 43.478 8.12 0.00 0.00 3.07
604 865 2.105821 CCTGAATTGCCGAATACCCCTA 59.894 50.000 0.00 0.00 0.00 3.53
734 1000 4.811024 TCAGTTGAAATGAGTGAGTGTGAC 59.189 41.667 0.00 0.00 0.00 3.67
735 1001 4.024556 CAGTTGAAATGAGTGAGTGTGACC 60.025 45.833 0.00 0.00 0.00 4.02
736 1002 3.836365 TGAAATGAGTGAGTGTGACCA 57.164 42.857 0.00 0.00 0.00 4.02
737 1003 4.356405 TGAAATGAGTGAGTGTGACCAT 57.644 40.909 0.00 0.00 0.00 3.55
738 1004 4.067192 TGAAATGAGTGAGTGTGACCATG 58.933 43.478 0.00 0.00 0.00 3.66
784 1060 5.393027 CCGAGTTTCCTAAACCATTTCCATG 60.393 44.000 0.00 0.00 42.34 3.66
809 1085 7.867403 TGTTCCAGATTTTTCAAGACTTATTGC 59.133 33.333 0.00 0.00 0.00 3.56
822 1098 3.879892 GACTTATTGCAATCCCTCTGACC 59.120 47.826 16.86 0.00 0.00 4.02
823 1099 3.266772 ACTTATTGCAATCCCTCTGACCA 59.733 43.478 16.86 0.00 0.00 4.02
824 1100 4.079558 ACTTATTGCAATCCCTCTGACCAT 60.080 41.667 16.86 0.00 0.00 3.55
825 1101 2.133281 TTGCAATCCCTCTGACCATG 57.867 50.000 0.00 0.00 0.00 3.66
827 1103 0.548031 GCAATCCCTCTGACCATGGA 59.452 55.000 21.47 0.00 0.00 3.41
835 1111 3.194116 CCCTCTGACCATGGATGTTTTTG 59.806 47.826 21.47 0.00 0.00 2.44
859 1135 3.244700 ACTTTCAGCTCACAAGTAGCCAT 60.245 43.478 0.70 0.00 41.02 4.40
866 1142 4.223923 AGCTCACAAGTAGCCATTCTTACT 59.776 41.667 0.00 0.00 41.02 2.24
873 1149 6.016276 ACAAGTAGCCATTCTTACTGTTTTGG 60.016 38.462 0.00 0.00 0.00 3.28
950 1226 6.128172 CCTGATTGGACAGACATTTGTCTTAC 60.128 42.308 10.46 7.67 45.23 2.34
1021 1297 3.113745 CAGAACCATGGCCATCGC 58.886 61.111 17.61 5.37 0.00 4.58
1026 1302 1.727511 AACCATGGCCATCGCATTCG 61.728 55.000 17.61 2.13 36.38 3.34
1029 1305 1.153188 ATGGCCATCGCATTCGTCA 60.153 52.632 14.09 0.00 36.38 4.35
1071 1347 1.534175 CGACCACGCTCTCCTAATGAC 60.534 57.143 0.00 0.00 0.00 3.06
1186 1462 7.524717 AATTACATGCTGGTCACTAAACTTT 57.475 32.000 0.00 0.00 0.00 2.66
1187 1463 4.836125 ACATGCTGGTCACTAAACTTTG 57.164 40.909 0.00 0.00 0.00 2.77
1188 1464 3.004734 ACATGCTGGTCACTAAACTTTGC 59.995 43.478 0.00 0.00 0.00 3.68
1189 1465 2.930950 TGCTGGTCACTAAACTTTGCT 58.069 42.857 0.00 0.00 0.00 3.91
1190 1466 2.878406 TGCTGGTCACTAAACTTTGCTC 59.122 45.455 0.00 0.00 0.00 4.26
1192 1468 3.315191 GCTGGTCACTAAACTTTGCTCAA 59.685 43.478 0.00 0.00 0.00 3.02
1193 1469 4.555511 GCTGGTCACTAAACTTTGCTCAAG 60.556 45.833 0.00 0.00 38.64 3.02
1205 1481 6.449635 ACTTTGCTCAAGTGTGTCAAATAA 57.550 33.333 1.49 0.00 44.70 1.40
1234 1510 9.708222 CATCGTTCTCTTAATTTCCACATTTAG 57.292 33.333 0.00 0.00 0.00 1.85
1278 1554 2.452813 CGCGTATCACCACCAGCAC 61.453 63.158 0.00 0.00 0.00 4.40
1282 1558 3.657448 TATCACCACCAGCACGCCG 62.657 63.158 0.00 0.00 0.00 6.46
1292 1568 1.300465 AGCACGCCGCATCAGATAG 60.300 57.895 0.00 0.00 46.13 2.08
1298 1574 0.312416 GCCGCATCAGATAGACGACT 59.688 55.000 0.00 0.00 0.00 4.18
1363 1639 4.645535 TCTTTCTCAACATTCAGGTCTGG 58.354 43.478 0.00 0.00 0.00 3.86
1381 1657 8.204160 CAGGTCTGGTAAACTCATATGATGTAA 58.796 37.037 5.72 0.00 0.00 2.41
1382 1658 8.938883 AGGTCTGGTAAACTCATATGATGTAAT 58.061 33.333 5.72 3.17 0.00 1.89
1386 1662 9.996554 CTGGTAAACTCATATGATGTAATACCA 57.003 33.333 26.20 26.20 36.24 3.25
1403 1679 3.653539 ACCATTGTTTTTAAGGCGTCC 57.346 42.857 0.00 0.00 0.00 4.79
1406 1682 3.759618 CCATTGTTTTTAAGGCGTCCCTA 59.240 43.478 0.00 0.00 41.90 3.53
1412 1688 1.259840 TTAAGGCGTCCCTAAGGCGT 61.260 55.000 0.00 0.00 41.90 5.68
1605 1884 0.915364 GCTCTGGGTGGGAAGAGAAT 59.085 55.000 3.92 0.00 42.15 2.40
1969 2312 1.515020 CTGCAGTTCCTCCTCTCCG 59.485 63.158 5.25 0.00 0.00 4.63
2023 2371 0.598065 CCTGCAGTTGCCTACCAAAC 59.402 55.000 13.81 0.00 41.18 2.93
2095 2443 1.584175 TGCTTTTGTGGCAGCAATTG 58.416 45.000 0.00 0.00 43.14 2.32
2101 2449 1.180456 TGTGGCAGCAATTGGACAGG 61.180 55.000 7.72 0.00 0.00 4.00
2130 2478 5.595952 ACAAGTCAAGAGAGGCTTCATTTTT 59.404 36.000 0.00 0.00 33.60 1.94
2186 2535 1.550524 GGTCACCATCTGCTACAGACA 59.449 52.381 0.00 0.00 43.63 3.41
2190 2539 0.174389 CCATCTGCTACAGACACGCT 59.826 55.000 0.00 0.00 43.63 5.07
2201 2550 0.669077 AGACACGCTCTCTCGTTTGT 59.331 50.000 0.00 0.00 41.21 2.83
2230 2579 3.510360 TCCTTCTAAGACACTGCAGGTAC 59.490 47.826 19.93 8.37 0.00 3.34
2236 2585 1.203063 AGACACTGCAGGTACCAGAGA 60.203 52.381 19.93 0.00 34.47 3.10
2326 7613 0.541392 CTGGTGGGATCGATTGTCCA 59.459 55.000 0.00 5.68 37.49 4.02
2391 7700 4.041567 TGGAACAAGATTAGGCACAGAGAA 59.958 41.667 0.00 0.00 31.92 2.87
2392 7701 5.003804 GGAACAAGATTAGGCACAGAGAAA 58.996 41.667 0.00 0.00 0.00 2.52
2591 7901 6.252995 ACCTTGAACATAATTTGCTCCCTAA 58.747 36.000 0.00 0.00 0.00 2.69
2597 7907 9.693739 TGAACATAATTTGCTCCCTAATTTAGA 57.306 29.630 4.96 0.00 30.84 2.10
2600 7910 9.866655 ACATAATTTGCTCCCTAATTTAGATCA 57.133 29.630 4.96 0.00 30.84 2.92
2999 8343 6.356556 TGAATCATTTCGACTATCCACCATT 58.643 36.000 0.00 0.00 34.39 3.16
3087 8455 1.548719 CGTGTCTGGACAGTATTCCCA 59.451 52.381 3.47 0.00 42.74 4.37
3144 8512 4.276926 GTCAAGTGCCTTTTCTTCATCTGT 59.723 41.667 0.00 0.00 0.00 3.41
3192 8561 1.264045 TTGGCCAGCTTAAATGCCCC 61.264 55.000 5.11 0.00 43.35 5.80
3300 8686 4.042062 TCCAGATGAATTTGGTGTCTGTCT 59.958 41.667 0.24 0.00 35.66 3.41
3301 8687 4.763793 CCAGATGAATTTGGTGTCTGTCTT 59.236 41.667 0.00 0.00 35.66 3.01
3302 8688 5.335426 CCAGATGAATTTGGTGTCTGTCTTG 60.335 44.000 0.00 0.00 35.66 3.02
3303 8689 4.763793 AGATGAATTTGGTGTCTGTCTTGG 59.236 41.667 0.00 0.00 0.00 3.61
3304 8690 3.897239 TGAATTTGGTGTCTGTCTTGGT 58.103 40.909 0.00 0.00 0.00 3.67
3305 8691 3.631686 TGAATTTGGTGTCTGTCTTGGTG 59.368 43.478 0.00 0.00 0.00 4.17
3306 8692 2.051334 TTTGGTGTCTGTCTTGGTGG 57.949 50.000 0.00 0.00 0.00 4.61
3307 8693 1.208706 TTGGTGTCTGTCTTGGTGGA 58.791 50.000 0.00 0.00 0.00 4.02
3308 8694 1.208706 TGGTGTCTGTCTTGGTGGAA 58.791 50.000 0.00 0.00 0.00 3.53
3309 8695 1.562008 TGGTGTCTGTCTTGGTGGAAA 59.438 47.619 0.00 0.00 0.00 3.13
3310 8696 1.947456 GGTGTCTGTCTTGGTGGAAAC 59.053 52.381 0.00 0.00 0.00 2.78
3311 8697 1.947456 GTGTCTGTCTTGGTGGAAACC 59.053 52.381 0.00 0.00 0.00 3.27
3312 8698 1.562008 TGTCTGTCTTGGTGGAAACCA 59.438 47.619 0.00 0.00 38.14 3.67
3313 8699 2.174639 TGTCTGTCTTGGTGGAAACCAT 59.825 45.455 0.00 0.00 39.86 3.55
3314 8700 3.222603 GTCTGTCTTGGTGGAAACCATT 58.777 45.455 0.00 0.00 39.86 3.16
3315 8701 3.004734 GTCTGTCTTGGTGGAAACCATTG 59.995 47.826 0.00 0.00 39.86 2.82
3316 8702 1.686052 TGTCTTGGTGGAAACCATTGC 59.314 47.619 0.00 0.00 39.86 3.56
3426 8815 0.803768 CAGGACCTTCAGACGATGCG 60.804 60.000 0.00 0.00 0.00 4.73
3435 8824 0.451628 CAGACGATGCGCAACAACAG 60.452 55.000 17.11 0.69 0.00 3.16
3804 10089 3.769201 GCTTCTTGCCCACTGCTT 58.231 55.556 0.00 0.00 42.00 3.91
3806 10091 0.807496 GCTTCTTGCCCACTGCTTAG 59.193 55.000 0.00 0.00 42.00 2.18
3814 10099 1.731720 CCCACTGCTTAGCTCTTGTC 58.268 55.000 5.60 0.00 0.00 3.18
3864 10149 3.700539 TGTAATGGGAAGATGTGGCAATG 59.299 43.478 0.00 0.00 0.00 2.82
3945 10230 8.306761 GTTTCCTTTTATGATGGTGATTCAGTT 58.693 33.333 0.00 0.00 0.00 3.16
4209 10498 9.832445 AATTGGTGATTATCGTAGACTAATTGT 57.168 29.630 4.73 0.00 42.51 2.71
4239 10528 8.959705 TGATATATCCAATTGCATCAGAGATC 57.040 34.615 10.25 0.00 0.00 2.75
4432 10726 4.586841 AGGTTCACTAGATCTAGATGGTGC 59.413 45.833 31.91 16.97 36.97 5.01
4478 10773 6.910972 GGTGCCGTTTAGCTAATTAATCTTTC 59.089 38.462 7.08 0.00 0.00 2.62
4593 11123 6.062942 GTTTAACAAACCAAGCTCACGCTAG 61.063 44.000 0.00 0.00 39.47 3.42
4651 11226 9.874215 CAATATGTAGCTAATGTCTTGTTGATG 57.126 33.333 0.00 0.00 0.00 3.07
4787 11387 6.619801 AACAAAGATGGTAGTGAAGTGTTC 57.380 37.500 0.00 0.00 0.00 3.18
4790 11390 4.175787 AGATGGTAGTGAAGTGTTCGAC 57.824 45.455 0.00 0.00 0.00 4.20
5217 13323 3.650281 TCTGTATTCACATGCCATGGT 57.350 42.857 14.67 0.00 33.14 3.55
5223 13329 0.966875 TCACATGCCATGGTTCCAGC 60.967 55.000 14.67 0.00 33.60 4.85
5526 13652 4.609947 CTGCTCTGCTGACTGAAGTATAG 58.390 47.826 0.00 0.00 0.00 1.31
5549 13675 9.890629 ATAGTCAGAACATAAGACTAAATTGCA 57.109 29.630 5.72 0.00 45.02 4.08
5550 13676 8.621532 AGTCAGAACATAAGACTAAATTGCAA 57.378 30.769 0.00 0.00 40.59 4.08
5557 13683 7.688372 ACATAAGACTAAATTGCAATCTGTCG 58.312 34.615 13.38 10.24 0.00 4.35
5617 13766 8.755018 GTCATGTACTTGAAAATTGGACTTTTG 58.245 33.333 12.62 0.00 0.00 2.44
5619 13768 9.743057 CATGTACTTGAAAATTGGACTTTTGTA 57.257 29.630 2.62 0.00 0.00 2.41
5684 13921 6.539826 TGGTTTTCTAGCTGACATCACATATG 59.460 38.462 0.00 0.00 0.00 1.78
5727 13964 4.866921 TCCATTCGACCAGTATTATCACG 58.133 43.478 0.00 0.00 0.00 4.35
5762 13999 8.598041 GTTCAATCCCTGTATATACTGAAGGAT 58.402 37.037 18.45 17.86 32.09 3.24
5769 14006 8.766476 CCCTGTATATACTGAAGGATCATGAAT 58.234 37.037 18.45 0.00 34.37 2.57
5793 14030 4.277257 TGTATTTCATGAATGCGCTCAC 57.723 40.909 9.40 0.00 33.54 3.51
5797 14034 0.249955 TCATGAATGCGCTCACCAGA 59.750 50.000 9.73 1.71 0.00 3.86
5816 14056 6.884280 CCAGATTATGGTAGTTTGATTCCC 57.116 41.667 0.00 0.00 44.91 3.97
5833 14073 0.906282 CCCCTTGCATTGGCTTTCCT 60.906 55.000 0.00 0.00 41.91 3.36
5835 14075 1.259609 CCTTGCATTGGCTTTCCTGA 58.740 50.000 0.00 0.00 41.91 3.86
5844 14092 5.678107 GCATTGGCTTTCCTGAGTTATTCTG 60.678 44.000 0.00 0.00 36.96 3.02
5851 14099 4.007581 TCCTGAGTTATTCTGGATGGGA 57.992 45.455 0.00 0.00 45.76 4.37
5973 14221 2.479730 CGTCGGAAGTACAAGGAGATGG 60.480 54.545 0.00 0.00 0.00 3.51
6121 14369 5.441700 GTGTCAACAGATTGATAGACACG 57.558 43.478 7.61 0.00 46.43 4.49
6133 14381 2.672961 TAGACACGCCTTTGGATCAG 57.327 50.000 0.00 0.00 0.00 2.90
6134 14382 0.674895 AGACACGCCTTTGGATCAGC 60.675 55.000 0.00 0.00 0.00 4.26
6135 14383 1.648467 GACACGCCTTTGGATCAGCC 61.648 60.000 0.00 0.00 37.10 4.85
6161 14412 2.781945 AGCAGTTTTTGGCTTCTTCG 57.218 45.000 0.00 0.00 36.92 3.79
6197 14448 0.603707 TCCTGCCGAGTCAGCAAAAG 60.604 55.000 2.06 0.00 40.35 2.27
6289 14543 6.565234 AGAAATTCTGATACGTACTCTGGTG 58.435 40.000 0.00 0.00 0.00 4.17
6324 14579 8.896320 TTAATGTTGTATAGTTATGGCGATGT 57.104 30.769 0.00 0.00 0.00 3.06
6343 14598 8.923683 GGCGATGTAATACTAGAGATTTTTACC 58.076 37.037 0.00 0.00 0.00 2.85
6437 14692 0.689055 TTGGCAGATGAGCTGTGACT 59.311 50.000 0.00 0.00 46.62 3.41
6454 14709 8.757877 AGCTGTGACTTTCTTTAGAGAAGATAT 58.242 33.333 0.00 0.00 42.55 1.63
6484 14739 6.616774 TTTTAAATGGAGGCAAAAGCTTTG 57.383 33.333 13.54 8.26 0.00 2.77
6485 14740 2.174363 AATGGAGGCAAAAGCTTTGC 57.826 45.000 13.54 17.13 44.22 3.68
6498 14753 8.647143 GCAAAAGCTTTGCCTCATATATTAAA 57.353 30.769 13.54 0.00 39.38 1.52
6499 14754 9.264719 GCAAAAGCTTTGCCTCATATATTAAAT 57.735 29.630 13.54 0.00 39.38 1.40
6517 14772 7.855784 ATTAAATGAGGGGAAAGAGTTTGTT 57.144 32.000 0.00 0.00 0.00 2.83
6518 14773 8.950007 ATTAAATGAGGGGAAAGAGTTTGTTA 57.050 30.769 0.00 0.00 0.00 2.41
6523 14778 4.862371 AGGGGAAAGAGTTTGTTACAACA 58.138 39.130 0.00 0.00 37.08 3.33
6524 14779 4.643334 AGGGGAAAGAGTTTGTTACAACAC 59.357 41.667 0.00 0.12 38.92 3.32
6525 14780 4.399934 GGGGAAAGAGTTTGTTACAACACA 59.600 41.667 0.00 0.00 38.92 3.72
6526 14781 5.068591 GGGGAAAGAGTTTGTTACAACACAT 59.931 40.000 0.00 0.00 38.92 3.21
6528 14783 7.360361 GGGAAAGAGTTTGTTACAACACATAG 58.640 38.462 0.00 0.00 38.92 2.23
6531 14786 8.500753 AAAGAGTTTGTTACAACACATAGTCA 57.499 30.769 0.00 0.00 38.92 3.41
6532 14787 8.500753 AAGAGTTTGTTACAACACATAGTCAA 57.499 30.769 0.00 0.00 38.92 3.18
6534 14789 7.985184 AGAGTTTGTTACAACACATAGTCAAGA 59.015 33.333 0.00 0.00 38.92 3.02
6535 14790 8.500753 AGTTTGTTACAACACATAGTCAAGAA 57.499 30.769 0.00 0.00 38.92 2.52
6538 14793 5.176774 TGTTACAACACATAGTCAAGAAGCG 59.823 40.000 0.00 0.00 33.17 4.68
6541 14796 1.001974 ACACATAGTCAAGAAGCGGCA 59.998 47.619 1.45 0.00 0.00 5.69
6542 14797 2.283298 CACATAGTCAAGAAGCGGCAT 58.717 47.619 1.45 0.00 0.00 4.40
6544 14799 2.093500 ACATAGTCAAGAAGCGGCATGA 60.093 45.455 1.45 0.00 0.00 3.07
6545 14800 2.010145 TAGTCAAGAAGCGGCATGAC 57.990 50.000 15.68 15.68 41.88 3.06
6546 14801 0.035317 AGTCAAGAAGCGGCATGACA 59.965 50.000 21.57 0.00 43.53 3.58
6547 14802 0.874390 GTCAAGAAGCGGCATGACAA 59.126 50.000 17.45 0.00 41.35 3.18
6548 14803 1.470098 GTCAAGAAGCGGCATGACAAT 59.530 47.619 17.45 0.00 41.35 2.71
6549 14804 2.095059 GTCAAGAAGCGGCATGACAATT 60.095 45.455 17.45 0.00 41.35 2.32
6552 14807 4.398988 TCAAGAAGCGGCATGACAATTATT 59.601 37.500 0.00 0.00 0.00 1.40
6553 14808 4.558538 AGAAGCGGCATGACAATTATTC 57.441 40.909 0.00 0.00 0.00 1.75
6554 14809 3.316308 AGAAGCGGCATGACAATTATTCC 59.684 43.478 0.00 0.00 0.00 3.01
6555 14810 1.956477 AGCGGCATGACAATTATTCCC 59.044 47.619 0.00 0.00 0.00 3.97
6556 14811 1.334960 GCGGCATGACAATTATTCCCG 60.335 52.381 0.00 0.00 37.64 5.14
6557 14812 1.334960 CGGCATGACAATTATTCCCGC 60.335 52.381 0.00 0.00 0.00 6.13
6560 14815 3.243839 GGCATGACAATTATTCCCGCAAT 60.244 43.478 0.00 0.00 0.00 3.56
6562 14817 5.508825 GGCATGACAATTATTCCCGCAATAA 60.509 40.000 0.00 1.54 40.54 1.40
6584 14839 5.386958 AAAAAGACCCTAATTTCTTCGCC 57.613 39.130 0.00 0.00 30.55 5.54
6585 14840 2.711978 AGACCCTAATTTCTTCGCCC 57.288 50.000 0.00 0.00 0.00 6.13
6586 14841 1.212195 AGACCCTAATTTCTTCGCCCC 59.788 52.381 0.00 0.00 0.00 5.80
6588 14843 0.818040 CCCTAATTTCTTCGCCCCGG 60.818 60.000 0.00 0.00 0.00 5.73
6589 14844 1.444917 CCTAATTTCTTCGCCCCGGC 61.445 60.000 0.00 0.00 37.85 6.13
6592 14847 2.781431 AATTTCTTCGCCCCGGCCTT 62.781 55.000 0.00 0.00 37.98 4.35
6593 14848 4.715523 TTCTTCGCCCCGGCCTTG 62.716 66.667 0.00 0.00 37.98 3.61
6600 14855 4.293671 CCCCGGCCTTGACCCAAA 62.294 66.667 0.00 0.00 0.00 3.28
6601 14856 2.676471 CCCGGCCTTGACCCAAAG 60.676 66.667 0.00 0.00 0.00 2.77
6616 14871 2.484264 CCCAAAGGTTTGTCTCATCGAC 59.516 50.000 1.94 0.00 43.14 4.20
6618 14873 3.057019 CAAAGGTTTGTCTCATCGACGA 58.943 45.455 0.00 0.00 45.87 4.20
6619 14874 3.594603 AAGGTTTGTCTCATCGACGAT 57.405 42.857 4.05 4.05 45.87 3.73
6620 14875 2.881074 AGGTTTGTCTCATCGACGATG 58.119 47.619 28.03 28.03 45.87 3.84
6621 14876 1.927174 GGTTTGTCTCATCGACGATGG 59.073 52.381 31.58 23.17 45.87 3.51
6623 14878 2.278026 TTGTCTCATCGACGATGGTG 57.722 50.000 31.58 24.55 45.87 4.17
6624 14879 0.179137 TGTCTCATCGACGATGGTGC 60.179 55.000 31.58 22.20 45.87 5.01
6625 14880 0.101399 GTCTCATCGACGATGGTGCT 59.899 55.000 31.58 0.00 40.15 4.40
6626 14881 0.101219 TCTCATCGACGATGGTGCTG 59.899 55.000 31.58 18.57 40.15 4.41
6627 14882 0.101219 CTCATCGACGATGGTGCTGA 59.899 55.000 31.58 15.52 40.15 4.26
6628 14883 0.101219 TCATCGACGATGGTGCTGAG 59.899 55.000 31.58 9.24 40.15 3.35
6629 14884 0.179127 CATCGACGATGGTGCTGAGT 60.179 55.000 26.65 0.00 36.51 3.41
6630 14885 1.065551 CATCGACGATGGTGCTGAGTA 59.934 52.381 26.65 0.00 36.51 2.59
6631 14886 0.733150 TCGACGATGGTGCTGAGTAG 59.267 55.000 0.00 0.00 0.00 2.57
6632 14887 0.248661 CGACGATGGTGCTGAGTAGG 60.249 60.000 0.00 0.00 0.00 3.18
6633 14888 1.103803 GACGATGGTGCTGAGTAGGA 58.896 55.000 0.00 0.00 0.00 2.94
6635 14890 2.101582 GACGATGGTGCTGAGTAGGATT 59.898 50.000 0.00 0.00 0.00 3.01
6639 14894 3.475566 TGGTGCTGAGTAGGATTATGC 57.524 47.619 0.00 0.00 0.00 3.14
6640 14895 2.104792 TGGTGCTGAGTAGGATTATGCC 59.895 50.000 0.00 0.00 0.00 4.40
6641 14896 2.408050 GTGCTGAGTAGGATTATGCCG 58.592 52.381 0.00 0.00 0.00 5.69
6642 14897 1.344438 TGCTGAGTAGGATTATGCCGG 59.656 52.381 0.00 0.00 0.00 6.13
6643 14898 1.618837 GCTGAGTAGGATTATGCCGGA 59.381 52.381 5.05 0.00 0.00 5.14
6644 14899 2.037251 GCTGAGTAGGATTATGCCGGAA 59.963 50.000 5.05 0.00 0.00 4.30
6645 14900 3.654414 CTGAGTAGGATTATGCCGGAAC 58.346 50.000 5.05 0.00 0.00 3.62
6646 14901 3.035363 TGAGTAGGATTATGCCGGAACA 58.965 45.455 5.05 0.00 0.00 3.18
6647 14902 3.181469 TGAGTAGGATTATGCCGGAACAC 60.181 47.826 5.05 0.00 0.00 3.32
6648 14903 2.104281 AGTAGGATTATGCCGGAACACC 59.896 50.000 5.05 0.00 0.00 4.16
6650 14905 0.182775 GGATTATGCCGGAACACCCT 59.817 55.000 5.05 0.00 0.00 4.34
6651 14906 1.409661 GGATTATGCCGGAACACCCTT 60.410 52.381 5.05 0.00 0.00 3.95
6652 14907 1.676006 GATTATGCCGGAACACCCTTG 59.324 52.381 5.05 0.00 0.00 3.61
6658 14943 2.335011 GGAACACCCTTGCGTTGC 59.665 61.111 0.00 0.00 0.00 4.17
6732 15019 1.953686 TGAAAGGGAGCCGAAAACTTG 59.046 47.619 0.00 0.00 0.00 3.16
6750 15037 7.681939 AAACTTGGCTTAAATCAGTCGATTA 57.318 32.000 0.00 0.00 41.12 1.75
6805 15092 4.137543 GGACATGGACAACTCTCTGTTTT 58.862 43.478 0.00 0.00 36.63 2.43
6822 15109 6.126409 TCTGTTTTTACTTCCCAGTCATGTT 58.874 36.000 0.00 0.00 34.06 2.71
6825 15112 9.226606 CTGTTTTTACTTCCCAGTCATGTTATA 57.773 33.333 0.00 0.00 34.06 0.98
6902 15194 7.348815 TGGTTACTCTGGATCATTCATGATTT 58.651 34.615 3.78 0.00 46.84 2.17
6943 15335 5.913137 TTTTTGTTCAACCAGTCACTCAT 57.087 34.783 0.00 0.00 0.00 2.90
6944 15336 5.913137 TTTTGTTCAACCAGTCACTCATT 57.087 34.783 0.00 0.00 0.00 2.57
6945 15337 5.913137 TTTGTTCAACCAGTCACTCATTT 57.087 34.783 0.00 0.00 0.00 2.32
6946 15338 7.397892 TTTTGTTCAACCAGTCACTCATTTA 57.602 32.000 0.00 0.00 0.00 1.40
6947 15339 6.618287 TTGTTCAACCAGTCACTCATTTAG 57.382 37.500 0.00 0.00 0.00 1.85
6948 15340 5.063204 TGTTCAACCAGTCACTCATTTAGG 58.937 41.667 0.00 0.00 0.00 2.69
6949 15341 5.163248 TGTTCAACCAGTCACTCATTTAGGA 60.163 40.000 0.00 0.00 0.00 2.94
6950 15342 5.560722 TCAACCAGTCACTCATTTAGGAA 57.439 39.130 0.00 0.00 0.00 3.36
6951 15343 6.126863 TCAACCAGTCACTCATTTAGGAAT 57.873 37.500 0.00 0.00 0.00 3.01
6952 15344 6.542821 TCAACCAGTCACTCATTTAGGAATT 58.457 36.000 0.00 0.00 0.00 2.17
6953 15345 7.004086 TCAACCAGTCACTCATTTAGGAATTT 58.996 34.615 0.00 0.00 0.00 1.82
6954 15346 7.174946 TCAACCAGTCACTCATTTAGGAATTTC 59.825 37.037 0.00 0.00 0.00 2.17
6955 15347 6.784031 ACCAGTCACTCATTTAGGAATTTCT 58.216 36.000 0.00 0.00 0.00 2.52
6956 15348 6.881602 ACCAGTCACTCATTTAGGAATTTCTC 59.118 38.462 0.00 0.00 0.00 2.87
6957 15349 7.108847 CCAGTCACTCATTTAGGAATTTCTCT 58.891 38.462 0.00 0.00 0.00 3.10
6958 15350 7.279758 CCAGTCACTCATTTAGGAATTTCTCTC 59.720 40.741 0.00 0.00 0.00 3.20
6959 15351 7.279758 CAGTCACTCATTTAGGAATTTCTCTCC 59.720 40.741 0.00 0.00 0.00 3.71
6960 15352 7.038017 AGTCACTCATTTAGGAATTTCTCTCCA 60.038 37.037 0.00 0.00 35.20 3.86
7004 15396 5.841810 TCCAACCAAACATGACATTTCTTC 58.158 37.500 0.00 0.00 0.00 2.87
7028 15420 5.636543 CCATTTTGTTTCTGGCAAGAGATTC 59.363 40.000 0.00 0.00 32.79 2.52
7040 15432 4.499019 GGCAAGAGATTCGAAACCAAACAA 60.499 41.667 0.00 0.00 0.00 2.83
7062 15454 5.929697 ATAACATGCATGTAGAATGGTCG 57.070 39.130 31.55 1.53 40.80 4.79
7079 15471 1.329906 GTCGCATCATTCTGCTTCCTG 59.670 52.381 0.00 0.00 40.06 3.86
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
52 56 0.249784 CGACCTCCGTATCTCCTCGA 60.250 60.000 0.00 0.00 0.00 4.04
168 200 2.502295 GACAGAGATTGGATGGATGCC 58.498 52.381 0.00 0.00 0.00 4.40
208 240 5.282436 TCATCTCCTCCCTGAAGCTATAT 57.718 43.478 0.00 0.00 0.00 0.86
214 246 5.130809 AGAGAATTTCATCTCCTCCCTGAAG 59.869 44.000 0.00 0.00 45.70 3.02
216 248 4.408270 CAGAGAATTTCATCTCCTCCCTGA 59.592 45.833 0.00 0.00 45.70 3.86
218 250 4.369872 ACAGAGAATTTCATCTCCTCCCT 58.630 43.478 0.00 0.00 45.70 4.20
228 282 9.031537 TGTACTAATACCAGACAGAGAATTTCA 57.968 33.333 0.00 0.00 0.00 2.69
237 301 9.825972 CACAAATTTTGTACTAATACCAGACAG 57.174 33.333 14.13 0.00 43.23 3.51
264 331 2.067013 GAGGCAAAGTACAGGAACGAC 58.933 52.381 0.00 0.00 0.00 4.34
313 384 3.674528 ATAGCGATCTCTCCACCAATG 57.325 47.619 0.00 0.00 0.00 2.82
325 396 2.135933 CCCCACGAAGAAATAGCGATC 58.864 52.381 0.00 0.00 0.00 3.69
345 416 1.919600 AATCCTCCACTGCTGCCCTC 61.920 60.000 0.00 0.00 0.00 4.30
379 455 2.956132 TGCACTGAAATTTCCCAAGGA 58.044 42.857 15.48 1.95 0.00 3.36
390 466 8.846943 TTCAATCTACTCTAAATGCACTGAAA 57.153 30.769 0.00 0.00 0.00 2.69
392 468 7.011763 GCATTCAATCTACTCTAAATGCACTGA 59.988 37.037 11.74 0.00 45.07 3.41
393 469 7.130917 GCATTCAATCTACTCTAAATGCACTG 58.869 38.462 11.74 0.00 45.07 3.66
394 470 7.256756 GCATTCAATCTACTCTAAATGCACT 57.743 36.000 11.74 0.00 45.07 4.40
398 474 8.659925 ACAGAGCATTCAATCTACTCTAAATG 57.340 34.615 0.00 0.00 35.99 2.32
399 475 9.678260 AAACAGAGCATTCAATCTACTCTAAAT 57.322 29.630 0.00 0.00 35.99 1.40
400 476 8.939929 CAAACAGAGCATTCAATCTACTCTAAA 58.060 33.333 0.00 0.00 35.99 1.85
402 478 6.536582 GCAAACAGAGCATTCAATCTACTCTA 59.463 38.462 0.00 0.00 35.99 2.43
403 479 5.353678 GCAAACAGAGCATTCAATCTACTCT 59.646 40.000 0.00 0.00 38.22 3.24
438 521 5.358298 AGAAATTGTCGGTTCAAAGTAGC 57.642 39.130 0.00 0.00 0.00 3.58
509 759 9.734620 TTGCAAAACTCGTACGTATATAATAGT 57.265 29.630 16.05 5.65 0.00 2.12
514 764 9.904647 GAATTTTGCAAAACTCGTACGTATATA 57.095 29.630 26.05 0.00 0.00 0.86
515 765 7.906527 GGAATTTTGCAAAACTCGTACGTATAT 59.093 33.333 26.05 3.46 0.00 0.86
516 766 7.095313 TGGAATTTTGCAAAACTCGTACGTATA 60.095 33.333 26.05 0.03 0.00 1.47
517 767 6.081693 GGAATTTTGCAAAACTCGTACGTAT 58.918 36.000 26.05 4.19 0.00 3.06
518 768 5.007430 TGGAATTTTGCAAAACTCGTACGTA 59.993 36.000 26.05 0.81 0.00 3.57
519 769 4.201930 TGGAATTTTGCAAAACTCGTACGT 60.202 37.500 26.05 5.68 0.00 3.57
604 865 5.069781 CCTAGTATAAGCTTCCTGCAGTCTT 59.930 44.000 13.81 12.02 45.94 3.01
750 1022 7.178983 TGGTTTAGGAAACTCGGAATACTAAGA 59.821 37.037 2.39 0.00 43.67 2.10
784 1060 7.867403 TGCAATAAGTCTTGAAAAATCTGGAAC 59.133 33.333 0.00 0.00 0.00 3.62
809 1085 2.174210 ACATCCATGGTCAGAGGGATTG 59.826 50.000 12.58 0.00 38.05 2.67
822 1098 5.987347 AGCTGAAAGTTCAAAAACATCCATG 59.013 36.000 0.00 0.00 37.88 3.66
823 1099 6.165700 AGCTGAAAGTTCAAAAACATCCAT 57.834 33.333 0.00 0.00 37.88 3.41
824 1100 5.591099 GAGCTGAAAGTTCAAAAACATCCA 58.409 37.500 0.00 0.00 44.36 3.41
835 1111 3.187432 GGCTACTTGTGAGCTGAAAGTTC 59.813 47.826 9.77 4.36 45.29 3.01
859 1135 4.142271 CCACAAGCACCAAAACAGTAAGAA 60.142 41.667 0.00 0.00 0.00 2.52
866 1142 1.480137 CCTTCCACAAGCACCAAAACA 59.520 47.619 0.00 0.00 0.00 2.83
873 1149 0.877743 GAGCTTCCTTCCACAAGCAC 59.122 55.000 6.44 0.00 46.37 4.40
950 1226 7.798596 ATTTAAGTAGATGGCATGAGACAAG 57.201 36.000 3.81 0.00 35.50 3.16
1021 1297 2.130395 CCCACGAGATGATGACGAATG 58.870 52.381 0.00 0.00 0.00 2.67
1026 1302 4.253685 TCTTTTTCCCACGAGATGATGAC 58.746 43.478 0.00 0.00 0.00 3.06
1029 1305 3.691609 GCTTCTTTTTCCCACGAGATGAT 59.308 43.478 0.00 0.00 0.00 2.45
1071 1347 1.069022 CCTTGTGAACTTGTGGCATCG 60.069 52.381 0.00 0.00 0.00 3.84
1167 1443 3.254166 AGCAAAGTTTAGTGACCAGCATG 59.746 43.478 0.00 0.00 0.00 4.06
1169 1445 2.878406 GAGCAAAGTTTAGTGACCAGCA 59.122 45.455 0.00 0.00 0.00 4.41
1186 1462 5.122519 TGACTTATTTGACACACTTGAGCA 58.877 37.500 0.00 0.00 0.00 4.26
1187 1463 5.673337 TGACTTATTTGACACACTTGAGC 57.327 39.130 0.00 0.00 0.00 4.26
1188 1464 6.146184 ACGATGACTTATTTGACACACTTGAG 59.854 38.462 0.00 0.00 0.00 3.02
1189 1465 5.989168 ACGATGACTTATTTGACACACTTGA 59.011 36.000 0.00 0.00 0.00 3.02
1190 1466 6.228273 ACGATGACTTATTTGACACACTTG 57.772 37.500 0.00 0.00 0.00 3.16
1192 1468 6.223852 AGAACGATGACTTATTTGACACACT 58.776 36.000 0.00 0.00 0.00 3.55
1193 1469 6.366332 AGAGAACGATGACTTATTTGACACAC 59.634 38.462 0.00 0.00 0.00 3.82
1205 1481 6.464222 TGTGGAAATTAAGAGAACGATGACT 58.536 36.000 0.00 0.00 0.00 3.41
1234 1510 7.143340 GTGACCCACTTGATTTAGTTTTAACC 58.857 38.462 0.00 0.00 0.00 2.85
1251 1527 1.808390 GTGATACGCGGTGACCCAC 60.808 63.158 12.47 5.84 0.00 4.61
1278 1554 0.999228 GTCGTCTATCTGATGCGGCG 60.999 60.000 0.51 0.51 0.00 6.46
1282 1558 4.069304 ACTCCTAGTCGTCTATCTGATGC 58.931 47.826 0.00 0.00 0.00 3.91
1298 1574 7.182817 ACAAGCATAATTACACTGACTCCTA 57.817 36.000 0.00 0.00 0.00 2.94
1381 1657 4.158949 GGGACGCCTTAAAAACAATGGTAT 59.841 41.667 0.00 0.00 0.00 2.73
1382 1658 3.506844 GGGACGCCTTAAAAACAATGGTA 59.493 43.478 0.00 0.00 0.00 3.25
1383 1659 2.297880 GGGACGCCTTAAAAACAATGGT 59.702 45.455 0.00 0.00 0.00 3.55
1384 1660 2.560981 AGGGACGCCTTAAAAACAATGG 59.439 45.455 0.00 0.00 0.00 3.16
1385 1661 3.934457 AGGGACGCCTTAAAAACAATG 57.066 42.857 0.00 0.00 0.00 2.82
1386 1662 4.461431 CCTTAGGGACGCCTTAAAAACAAT 59.539 41.667 0.00 0.00 33.58 2.71
1387 1663 3.822167 CCTTAGGGACGCCTTAAAAACAA 59.178 43.478 0.00 0.00 33.58 2.83
1388 1664 3.414269 CCTTAGGGACGCCTTAAAAACA 58.586 45.455 0.00 0.00 33.58 2.83
1389 1665 2.163010 GCCTTAGGGACGCCTTAAAAAC 59.837 50.000 0.00 0.00 33.58 2.43
1391 1667 1.676615 CGCCTTAGGGACGCCTTAAAA 60.677 52.381 0.00 0.00 33.58 1.52
1482 1761 1.868713 TGGACGCCCTATGGACTAAA 58.131 50.000 0.00 0.00 0.00 1.85
1510 1789 0.994050 GGGAAGAATGGGGCCTAGGT 60.994 60.000 11.31 0.00 0.00 3.08
1518 1797 0.179018 CCTAAGGCGGGAAGAATGGG 60.179 60.000 0.00 0.00 0.00 4.00
1594 1873 1.204786 TTCCCGCCATTCTCTTCCCA 61.205 55.000 0.00 0.00 0.00 4.37
1605 1884 3.885814 AGACTCTGTTTCCCGCCA 58.114 55.556 0.00 0.00 0.00 5.69
2058 2406 9.700831 ACAAAAGCAATTTTCTAGGGAGTATAT 57.299 29.630 0.00 0.00 0.00 0.86
2059 2407 8.956426 CACAAAAGCAATTTTCTAGGGAGTATA 58.044 33.333 0.00 0.00 0.00 1.47
2060 2408 7.093771 CCACAAAAGCAATTTTCTAGGGAGTAT 60.094 37.037 0.00 0.00 0.00 2.12
2061 2409 6.208599 CCACAAAAGCAATTTTCTAGGGAGTA 59.791 38.462 0.00 0.00 0.00 2.59
2062 2410 5.011023 CCACAAAAGCAATTTTCTAGGGAGT 59.989 40.000 0.00 0.00 0.00 3.85
2063 2411 5.473039 CCACAAAAGCAATTTTCTAGGGAG 58.527 41.667 0.00 0.00 0.00 4.30
2064 2412 4.262420 GCCACAAAAGCAATTTTCTAGGGA 60.262 41.667 0.00 0.00 0.00 4.20
2065 2413 3.996363 GCCACAAAAGCAATTTTCTAGGG 59.004 43.478 0.00 0.00 0.00 3.53
2082 2430 1.180456 CCTGTCCAATTGCTGCCACA 61.180 55.000 0.00 0.00 0.00 4.17
2095 2443 1.334869 CTTGACTTGTTGCACCTGTCC 59.665 52.381 0.00 0.00 0.00 4.02
2101 2449 1.265365 GCCTCTCTTGACTTGTTGCAC 59.735 52.381 0.00 0.00 0.00 4.57
2186 2535 1.202486 TGGAAACAAACGAGAGAGCGT 60.202 47.619 0.00 0.00 40.58 5.07
2201 2550 5.003804 GCAGTGTCTTAGAAGGAATGGAAA 58.996 41.667 0.00 0.00 0.00 3.13
2236 2585 4.503714 ACATCAACTACGGGAATCCATT 57.496 40.909 0.09 0.00 0.00 3.16
2244 2593 1.754803 TCCAGCTACATCAACTACGGG 59.245 52.381 0.00 0.00 0.00 5.28
2297 2646 2.807676 GATCCCACCAGTGAAACCATT 58.192 47.619 0.00 0.00 37.80 3.16
2302 2651 2.039746 ACAATCGATCCCACCAGTGAAA 59.960 45.455 0.00 0.00 0.00 2.69
2326 7613 5.730550 TCTCATAAAAACAGCCACGACTAT 58.269 37.500 0.00 0.00 0.00 2.12
2391 7700 7.875327 ACGCCTATAGTCCATTGTTAATTTT 57.125 32.000 0.00 0.00 0.00 1.82
2392 7701 7.492352 GACGCCTATAGTCCATTGTTAATTT 57.508 36.000 0.00 0.00 32.78 1.82
2467 7776 0.615331 CTCCAGTGCCCAAGCTAGAA 59.385 55.000 0.00 0.00 40.80 2.10
2468 7777 0.252239 TCTCCAGTGCCCAAGCTAGA 60.252 55.000 0.00 0.00 40.80 2.43
2516 7825 1.385756 GGTACCCGCTCTCCTGACTC 61.386 65.000 0.00 0.00 0.00 3.36
2591 7901 8.565896 TGTCTAATGCAACAAGTGATCTAAAT 57.434 30.769 0.00 0.00 0.00 1.40
2595 7905 5.555017 ACTGTCTAATGCAACAAGTGATCT 58.445 37.500 0.00 0.00 0.00 2.75
2596 7906 5.409520 TGACTGTCTAATGCAACAAGTGATC 59.590 40.000 9.51 0.00 0.00 2.92
2597 7907 5.308014 TGACTGTCTAATGCAACAAGTGAT 58.692 37.500 9.51 0.00 0.00 3.06
2598 7908 4.702831 TGACTGTCTAATGCAACAAGTGA 58.297 39.130 9.51 0.00 0.00 3.41
2599 7909 5.207768 GTTGACTGTCTAATGCAACAAGTG 58.792 41.667 9.51 0.00 38.83 3.16
2600 7910 4.881273 TGTTGACTGTCTAATGCAACAAGT 59.119 37.500 9.51 0.00 43.84 3.16
2842 8176 9.706691 ATTGTTCTCGAAGTTTAGACAAGATTA 57.293 29.630 0.00 0.00 0.00 1.75
3087 8455 2.360350 CGGAGCACCTTGTGGCAT 60.360 61.111 0.00 0.00 36.63 4.40
3144 8512 0.958091 AATGGTGCTGCAGCGTTAAA 59.042 45.000 31.10 16.78 45.83 1.52
3192 8561 2.356194 GCGTTTTTGGGCAGCTGG 60.356 61.111 17.12 0.00 0.00 4.85
3302 8688 2.103941 TCTTTTGGCAATGGTTTCCACC 59.896 45.455 0.00 0.00 44.56 4.61
3303 8689 3.467374 TCTTTTGGCAATGGTTTCCAC 57.533 42.857 0.00 0.00 35.80 4.02
3304 8690 4.141528 ACAATCTTTTGGCAATGGTTTCCA 60.142 37.500 0.00 0.00 37.15 3.53
3305 8691 4.388485 ACAATCTTTTGGCAATGGTTTCC 58.612 39.130 0.00 0.00 37.15 3.13
3306 8692 4.150451 CGACAATCTTTTGGCAATGGTTTC 59.850 41.667 0.00 1.14 41.28 2.78
3307 8693 4.057432 CGACAATCTTTTGGCAATGGTTT 58.943 39.130 0.00 0.00 41.28 3.27
3308 8694 3.320541 TCGACAATCTTTTGGCAATGGTT 59.679 39.130 0.00 0.00 41.28 3.67
3309 8695 2.890311 TCGACAATCTTTTGGCAATGGT 59.110 40.909 0.00 0.00 41.28 3.55
3310 8696 3.574284 TCGACAATCTTTTGGCAATGG 57.426 42.857 0.00 0.00 41.28 3.16
3311 8697 5.463061 ACTTTTCGACAATCTTTTGGCAATG 59.537 36.000 0.00 0.00 41.28 2.82
3312 8698 5.600696 ACTTTTCGACAATCTTTTGGCAAT 58.399 33.333 0.00 0.00 41.28 3.56
3313 8699 5.004922 ACTTTTCGACAATCTTTTGGCAA 57.995 34.783 0.00 0.00 41.28 4.52
3314 8700 4.499019 GGACTTTTCGACAATCTTTTGGCA 60.499 41.667 0.00 0.00 41.28 4.92
3315 8701 3.981416 GGACTTTTCGACAATCTTTTGGC 59.019 43.478 0.00 0.00 37.52 4.52
3316 8702 5.215160 CAGGACTTTTCGACAATCTTTTGG 58.785 41.667 0.00 0.00 37.15 3.28
3426 8815 1.000938 CCTCTGCCTTTCTGTTGTTGC 60.001 52.381 0.00 0.00 0.00 4.17
3435 8824 4.310288 GCTCCACCTCTGCCTTTC 57.690 61.111 0.00 0.00 0.00 2.62
3804 10089 6.149474 GGAGCAAACATAAAAGACAAGAGCTA 59.851 38.462 0.00 0.00 0.00 3.32
3806 10091 5.048434 AGGAGCAAACATAAAAGACAAGAGC 60.048 40.000 0.00 0.00 0.00 4.09
3814 10099 3.181506 GCGAGGAGGAGCAAACATAAAAG 60.182 47.826 0.00 0.00 0.00 2.27
3945 10230 7.243604 AGGATAAATTTTGTGCAGAAATGGA 57.756 32.000 10.13 0.00 0.00 3.41
4036 10321 1.837439 ACTTGTGTCCTGTCCTTCACA 59.163 47.619 0.00 0.00 38.71 3.58
4215 10504 8.959705 TGATCTCTGATGCAATTGGATATATC 57.040 34.615 12.89 11.10 0.00 1.63
4239 10528 5.636543 GGTTTCATCAGAGCAAGGAAAAATG 59.363 40.000 0.00 0.00 0.00 2.32
4393 10687 9.321562 CTAGTGAACCTACTTAAGTCAAACAAA 57.678 33.333 12.39 0.00 32.19 2.83
4395 10689 8.241497 TCTAGTGAACCTACTTAAGTCAAACA 57.759 34.615 12.39 5.02 32.19 2.83
4432 10726 7.012421 GGCACCTCTTAACTTCCATTACATTAG 59.988 40.741 0.00 0.00 0.00 1.73
4478 10773 3.880047 TGGTTGGGTGAGAGTATTACG 57.120 47.619 0.00 0.00 0.00 3.18
4593 11123 4.808558 TGATGGTAAATTTGCAGTTCAGC 58.191 39.130 8.59 0.76 0.00 4.26
4787 11387 6.537566 CAGAACATATTTCTCAAACCAGTCG 58.462 40.000 0.00 0.00 0.00 4.18
4790 11390 5.106555 ACGCAGAACATATTTCTCAAACCAG 60.107 40.000 0.00 0.00 0.00 4.00
5051 13154 5.049405 CAGAAGACGTGAAAAGCCTTGTTAT 60.049 40.000 0.00 0.00 0.00 1.89
5052 13155 4.272504 CAGAAGACGTGAAAAGCCTTGTTA 59.727 41.667 0.00 0.00 0.00 2.41
5285 13408 6.992063 ACAGTAAGCATGATTGGTTAAGAG 57.008 37.500 6.43 0.00 44.82 2.85
5526 13652 9.495754 GATTGCAATTTAGTCTTATGTTCTGAC 57.504 33.333 14.33 0.00 0.00 3.51
5549 13675 2.967599 TGCAGACATAGCGACAGATT 57.032 45.000 0.00 0.00 33.85 2.40
5550 13676 2.167281 ACTTGCAGACATAGCGACAGAT 59.833 45.455 0.00 0.00 33.85 2.90
5557 13683 1.826385 ACCCAACTTGCAGACATAGC 58.174 50.000 0.00 0.00 0.00 2.97
5617 13766 3.418047 ACCTATGCAAGTTTGTGGGTAC 58.582 45.455 0.00 0.00 0.00 3.34
5619 13768 2.514803 GACCTATGCAAGTTTGTGGGT 58.485 47.619 0.00 0.00 0.00 4.51
5769 14006 4.575645 TGAGCGCATTCATGAAATACATCA 59.424 37.500 13.09 11.35 37.07 3.07
5797 14034 5.598417 GCAAGGGGAATCAAACTACCATAAT 59.402 40.000 0.00 0.00 0.00 1.28
5816 14056 1.203994 CTCAGGAAAGCCAATGCAAGG 59.796 52.381 4.27 4.27 41.13 3.61
5833 14073 8.742125 ATTAGTATCCCATCCAGAATAACTCA 57.258 34.615 0.00 0.00 0.00 3.41
5869 14117 7.382488 TGTCTTCTTACAGAGAAATCGAAACTG 59.618 37.037 0.00 0.00 43.56 3.16
5914 14162 0.253347 TTCCTTCCTCCCCTGCTCAT 60.253 55.000 0.00 0.00 0.00 2.90
6038 14286 2.237143 GTGACCAGACCCAATCAGATCA 59.763 50.000 0.00 0.00 0.00 2.92
6197 14448 7.923414 ACCAATCAAATAAACTCTGACTACC 57.077 36.000 0.00 0.00 0.00 3.18
6276 14530 4.329392 TCAGATCAACACCAGAGTACGTA 58.671 43.478 0.00 0.00 0.00 3.57
6278 14532 3.850122 TCAGATCAACACCAGAGTACG 57.150 47.619 0.00 0.00 0.00 3.67
6282 14536 7.120285 ACAACATTAATCAGATCAACACCAGAG 59.880 37.037 0.00 0.00 0.00 3.35
6389 14644 5.185828 AGACCCACTTGGAGCAATTTAATTC 59.814 40.000 0.00 0.00 37.39 2.17
6406 14661 2.561478 TCTGCCAACTTAAGACCCAC 57.439 50.000 10.09 0.00 0.00 4.61
6492 14747 8.950007 AACAAACTCTTTCCCCTCATTTAATA 57.050 30.769 0.00 0.00 0.00 0.98
6493 14748 7.855784 AACAAACTCTTTCCCCTCATTTAAT 57.144 32.000 0.00 0.00 0.00 1.40
6494 14749 7.780745 TGTAACAAACTCTTTCCCCTCATTTAA 59.219 33.333 0.00 0.00 0.00 1.52
6495 14750 7.291566 TGTAACAAACTCTTTCCCCTCATTTA 58.708 34.615 0.00 0.00 0.00 1.40
6497 14752 5.701224 TGTAACAAACTCTTTCCCCTCATT 58.299 37.500 0.00 0.00 0.00 2.57
6498 14753 5.319043 TGTAACAAACTCTTTCCCCTCAT 57.681 39.130 0.00 0.00 0.00 2.90
6499 14754 4.781775 TGTAACAAACTCTTTCCCCTCA 57.218 40.909 0.00 0.00 0.00 3.86
6500 14755 4.885325 TGTTGTAACAAACTCTTTCCCCTC 59.115 41.667 0.00 0.00 35.67 4.30
6501 14756 4.643334 GTGTTGTAACAAACTCTTTCCCCT 59.357 41.667 0.00 0.00 41.21 4.79
6502 14757 4.399934 TGTGTTGTAACAAACTCTTTCCCC 59.600 41.667 0.00 0.00 41.21 4.81
6503 14758 5.570234 TGTGTTGTAACAAACTCTTTCCC 57.430 39.130 0.00 0.00 41.21 3.97
6505 14760 8.609176 TGACTATGTGTTGTAACAAACTCTTTC 58.391 33.333 0.00 0.00 41.21 2.62
6506 14761 8.500753 TGACTATGTGTTGTAACAAACTCTTT 57.499 30.769 0.00 0.00 41.21 2.52
6507 14762 8.500753 TTGACTATGTGTTGTAACAAACTCTT 57.499 30.769 0.00 0.00 41.21 2.85
6509 14764 8.138365 TCTTGACTATGTGTTGTAACAAACTC 57.862 34.615 0.00 0.00 41.21 3.01
6510 14765 8.500753 TTCTTGACTATGTGTTGTAACAAACT 57.499 30.769 0.00 0.00 41.21 2.66
6511 14766 7.376072 GCTTCTTGACTATGTGTTGTAACAAAC 59.624 37.037 0.00 0.00 41.21 2.93
6513 14768 6.292649 CGCTTCTTGACTATGTGTTGTAACAA 60.293 38.462 0.00 0.00 41.21 2.83
6516 14771 4.688879 CCGCTTCTTGACTATGTGTTGTAA 59.311 41.667 0.00 0.00 0.00 2.41
6517 14772 4.242475 CCGCTTCTTGACTATGTGTTGTA 58.758 43.478 0.00 0.00 0.00 2.41
6518 14773 3.067106 CCGCTTCTTGACTATGTGTTGT 58.933 45.455 0.00 0.00 0.00 3.32
6523 14778 2.093500 TCATGCCGCTTCTTGACTATGT 60.093 45.455 0.00 0.00 0.00 2.29
6524 14779 2.286294 GTCATGCCGCTTCTTGACTATG 59.714 50.000 11.32 0.00 37.83 2.23
6525 14780 2.093500 TGTCATGCCGCTTCTTGACTAT 60.093 45.455 16.31 0.00 40.04 2.12
6526 14781 1.275010 TGTCATGCCGCTTCTTGACTA 59.725 47.619 16.31 6.18 40.04 2.59
6528 14783 0.874390 TTGTCATGCCGCTTCTTGAC 59.126 50.000 11.55 11.55 39.89 3.18
6531 14786 4.202050 GGAATAATTGTCATGCCGCTTCTT 60.202 41.667 0.00 0.00 0.00 2.52
6532 14787 3.316308 GGAATAATTGTCATGCCGCTTCT 59.684 43.478 0.00 0.00 0.00 2.85
6534 14789 2.362077 GGGAATAATTGTCATGCCGCTT 59.638 45.455 0.00 0.00 0.00 4.68
6535 14790 1.956477 GGGAATAATTGTCATGCCGCT 59.044 47.619 0.00 0.00 0.00 5.52
6538 14793 1.680735 TGCGGGAATAATTGTCATGCC 59.319 47.619 0.00 0.00 0.00 4.40
6562 14817 4.219944 GGGCGAAGAAATTAGGGTCTTTTT 59.780 41.667 0.00 0.00 34.23 1.94
6569 14824 0.818040 CCGGGGCGAAGAAATTAGGG 60.818 60.000 0.00 0.00 0.00 3.53
6573 14828 2.754254 GGCCGGGGCGAAGAAATT 60.754 61.111 4.27 0.00 43.06 1.82
6575 14830 3.961414 AAGGCCGGGGCGAAGAAA 61.961 61.111 15.57 0.00 43.06 2.52
6576 14831 4.715523 CAAGGCCGGGGCGAAGAA 62.716 66.667 15.57 0.00 43.06 2.52
6583 14838 4.293671 TTTGGGTCAAGGCCGGGG 62.294 66.667 2.18 0.00 0.00 5.73
6584 14839 2.676471 CTTTGGGTCAAGGCCGGG 60.676 66.667 2.18 0.00 0.00 5.73
6585 14840 2.676471 CCTTTGGGTCAAGGCCGG 60.676 66.667 0.00 0.00 0.00 6.13
6586 14841 1.112916 AAACCTTTGGGTCAAGGCCG 61.113 55.000 0.00 0.00 46.67 6.13
6588 14843 1.068588 GACAAACCTTTGGGTCAAGGC 59.931 52.381 2.94 0.00 46.67 4.35
6589 14844 2.623416 GAGACAAACCTTTGGGTCAAGG 59.377 50.000 2.94 0.00 46.67 3.61
6592 14847 3.486383 GATGAGACAAACCTTTGGGTCA 58.514 45.455 2.94 5.12 46.67 4.02
6593 14848 2.484264 CGATGAGACAAACCTTTGGGTC 59.516 50.000 2.94 0.00 46.67 4.46
6595 14850 2.778299 TCGATGAGACAAACCTTTGGG 58.222 47.619 2.94 0.00 42.34 4.12
6607 14862 0.101219 CAGCACCATCGTCGATGAGA 59.899 55.000 31.82 2.06 42.09 3.27
6608 14863 0.101219 TCAGCACCATCGTCGATGAG 59.899 55.000 31.82 24.07 42.09 2.90
6609 14864 0.101219 CTCAGCACCATCGTCGATGA 59.899 55.000 31.82 10.29 42.09 2.92
6610 14865 0.179127 ACTCAGCACCATCGTCGATG 60.179 55.000 25.19 25.19 39.52 3.84
6612 14867 0.733150 CTACTCAGCACCATCGTCGA 59.267 55.000 0.00 0.00 0.00 4.20
6613 14868 0.248661 CCTACTCAGCACCATCGTCG 60.249 60.000 0.00 0.00 0.00 5.12
6614 14869 1.103803 TCCTACTCAGCACCATCGTC 58.896 55.000 0.00 0.00 0.00 4.20
6616 14871 2.898729 AATCCTACTCAGCACCATCG 57.101 50.000 0.00 0.00 0.00 3.84
6618 14873 3.244700 GGCATAATCCTACTCAGCACCAT 60.245 47.826 0.00 0.00 0.00 3.55
6619 14874 2.104792 GGCATAATCCTACTCAGCACCA 59.895 50.000 0.00 0.00 0.00 4.17
6620 14875 2.772287 GGCATAATCCTACTCAGCACC 58.228 52.381 0.00 0.00 0.00 5.01
6621 14876 2.408050 CGGCATAATCCTACTCAGCAC 58.592 52.381 0.00 0.00 0.00 4.40
6623 14878 1.618837 TCCGGCATAATCCTACTCAGC 59.381 52.381 0.00 0.00 0.00 4.26
6624 14879 3.069586 TGTTCCGGCATAATCCTACTCAG 59.930 47.826 0.00 0.00 0.00 3.35
6625 14880 3.035363 TGTTCCGGCATAATCCTACTCA 58.965 45.455 0.00 0.00 0.00 3.41
6626 14881 3.391049 GTGTTCCGGCATAATCCTACTC 58.609 50.000 0.00 0.00 0.00 2.59
6627 14882 2.104281 GGTGTTCCGGCATAATCCTACT 59.896 50.000 0.00 0.00 0.00 2.57
6628 14883 2.490991 GGTGTTCCGGCATAATCCTAC 58.509 52.381 0.00 0.00 0.00 3.18
6629 14884 1.418637 GGGTGTTCCGGCATAATCCTA 59.581 52.381 0.00 0.00 33.83 2.94
6630 14885 0.182775 GGGTGTTCCGGCATAATCCT 59.817 55.000 0.00 0.00 33.83 3.24
6631 14886 0.182775 AGGGTGTTCCGGCATAATCC 59.817 55.000 0.00 0.00 41.52 3.01
6632 14887 1.676006 CAAGGGTGTTCCGGCATAATC 59.324 52.381 0.00 0.00 41.52 1.75
6633 14888 1.762708 CAAGGGTGTTCCGGCATAAT 58.237 50.000 0.00 0.00 41.52 1.28
6635 14890 1.377987 GCAAGGGTGTTCCGGCATA 60.378 57.895 0.00 0.00 41.52 3.14
6639 14894 2.593436 AACGCAAGGGTGTTCCGG 60.593 61.111 0.00 0.00 44.03 5.14
6640 14895 2.637025 CAACGCAAGGGTGTTCCG 59.363 61.111 0.00 0.00 45.51 4.30
6641 14896 2.335011 GCAACGCAAGGGTGTTCC 59.665 61.111 0.00 0.00 45.51 3.62
6642 14897 2.051345 CGCAACGCAAGGGTGTTC 60.051 61.111 0.00 0.00 45.51 3.18
6654 14909 0.884704 TGGAGAAAGTGAGGCGCAAC 60.885 55.000 10.83 4.09 0.00 4.17
6658 14943 1.813513 ACATTGGAGAAAGTGAGGCG 58.186 50.000 0.00 0.00 0.00 5.52
6663 14948 9.971922 AAATCTAGAAAAACATTGGAGAAAGTG 57.028 29.630 0.00 0.00 0.00 3.16
6732 15019 4.117685 ACGGTAATCGACTGATTTAAGCC 58.882 43.478 0.00 0.00 42.14 4.35
6750 15037 5.703978 TCATGAAACATGAATGAAACGGT 57.296 34.783 11.27 0.00 0.00 4.83
6805 15092 9.263446 ACTTACTATAACATGACTGGGAAGTAA 57.737 33.333 0.00 3.63 0.00 2.24
6870 15157 5.762179 TGATCCAGAGTAACCAACTTCAT 57.238 39.130 0.00 0.00 39.07 2.57
6871 15158 5.762179 ATGATCCAGAGTAACCAACTTCA 57.238 39.130 0.00 0.00 39.07 3.02
6872 15159 6.173339 TGAATGATCCAGAGTAACCAACTTC 58.827 40.000 0.00 0.00 39.07 3.01
6874 15161 5.762179 TGAATGATCCAGAGTAACCAACT 57.238 39.130 0.00 0.00 42.80 3.16
6948 15340 7.121759 TCACATCAAAGGAATGGAGAGAAATTC 59.878 37.037 0.00 0.00 32.98 2.17
6949 15341 6.950041 TCACATCAAAGGAATGGAGAGAAATT 59.050 34.615 0.00 0.00 0.00 1.82
6950 15342 6.487828 TCACATCAAAGGAATGGAGAGAAAT 58.512 36.000 0.00 0.00 0.00 2.17
6951 15343 5.879763 TCACATCAAAGGAATGGAGAGAAA 58.120 37.500 0.00 0.00 0.00 2.52
6952 15344 5.013495 ACTCACATCAAAGGAATGGAGAGAA 59.987 40.000 11.97 0.00 0.00 2.87
6953 15345 4.533707 ACTCACATCAAAGGAATGGAGAGA 59.466 41.667 11.97 0.00 0.00 3.10
6954 15346 4.841422 ACTCACATCAAAGGAATGGAGAG 58.159 43.478 0.00 0.00 0.00 3.20
6955 15347 4.916041 ACTCACATCAAAGGAATGGAGA 57.084 40.909 0.00 0.00 0.00 3.71
6956 15348 4.397417 GGAACTCACATCAAAGGAATGGAG 59.603 45.833 0.00 0.00 0.00 3.86
6957 15349 4.335416 GGAACTCACATCAAAGGAATGGA 58.665 43.478 0.00 0.00 0.00 3.41
6958 15350 3.445096 GGGAACTCACATCAAAGGAATGG 59.555 47.826 0.00 0.00 0.00 3.16
6959 15351 4.338879 AGGGAACTCACATCAAAGGAATG 58.661 43.478 0.00 0.00 32.90 2.67
6960 15352 4.664688 AGGGAACTCACATCAAAGGAAT 57.335 40.909 0.00 0.00 32.90 3.01
7004 15396 4.589216 TCTCTTGCCAGAAACAAAATGG 57.411 40.909 0.00 0.00 37.15 3.16
7028 15420 5.404968 ACATGCATGTTATTGTTTGGTTTCG 59.595 36.000 26.61 0.00 37.90 3.46
7040 15432 4.214119 GCGACCATTCTACATGCATGTTAT 59.786 41.667 35.45 22.63 41.97 1.89
7071 15463 2.372264 GAATGAGCCATTCAGGAAGCA 58.628 47.619 17.78 0.00 46.50 3.91


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.