Multiple sequence alignment - TraesCS1A01G010700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G010700 chr1A 100.000 2211 0 0 1 2211 6475852 6473642 0.000000e+00 4084.0
1 TraesCS1A01G010700 chr1A 100.000 1618 0 0 2580 4197 6473273 6471656 0.000000e+00 2988.0
2 TraesCS1A01G010700 chr1A 92.857 182 11 1 3746 3925 480758913 480758732 3.220000e-66 263.0
3 TraesCS1A01G010700 chr1A 90.476 168 16 0 4030 4197 589866355 589866188 5.460000e-54 222.0
4 TraesCS1A01G010700 chr1A 100.000 32 0 0 3909 3940 6472196 6472165 4.530000e-05 60.2
5 TraesCS1A01G010700 chr3A 98.690 2213 21 6 1 2211 177677260 177679466 0.000000e+00 3919.0
6 TraesCS1A01G010700 chr3A 98.971 1166 12 0 2580 3745 177679531 177680696 0.000000e+00 2087.0
7 TraesCS1A01G010700 chr3A 91.700 1000 49 11 2758 3745 31807462 31806485 0.000000e+00 1356.0
8 TraesCS1A01G010700 chr3A 99.654 289 0 1 3909 4197 177680701 177680988 1.030000e-145 527.0
9 TraesCS1A01G010700 chr3A 96.194 289 11 0 3909 4197 31806404 31806116 1.370000e-129 473.0
10 TraesCS1A01G010700 chr3A 97.826 46 0 1 3644 3688 177680687 177680732 1.250000e-10 78.7
11 TraesCS1A01G010700 chr3A 100.000 32 0 0 3909 3940 31806573 31806542 4.530000e-05 60.2
12 TraesCS1A01G010700 chr7B 92.486 519 31 4 1622 2139 616827857 616827346 0.000000e+00 736.0
13 TraesCS1A01G010700 chr7B 94.748 457 24 0 1167 1623 616828373 616827917 0.000000e+00 712.0
14 TraesCS1A01G010700 chr7B 91.466 457 34 2 1167 1623 616756473 616756022 1.280000e-174 623.0
15 TraesCS1A01G010700 chr7B 88.835 412 30 6 742 1147 616828758 616828357 3.770000e-135 492.0
16 TraesCS1A01G010700 chr7B 87.136 412 36 9 742 1147 616756857 616756457 6.400000e-123 451.0
17 TraesCS1A01G010700 chr7B 87.111 225 27 2 1426 1648 616755884 616755660 1.940000e-63 254.0
18 TraesCS1A01G010700 chr7B 87.395 119 15 0 2640 2758 616755571 616755453 2.040000e-28 137.0
19 TraesCS1A01G010700 chr7B 83.158 95 10 4 7 101 68839716 68839804 9.670000e-12 82.4
20 TraesCS1A01G010700 chr7A 87.195 492 48 8 1167 1648 652008857 652008371 2.850000e-151 545.0
21 TraesCS1A01G010700 chr7A 84.906 424 39 11 730 1147 652009245 652008841 5.050000e-109 405.0
22 TraesCS1A01G010700 chr7A 81.768 181 16 6 2587 2758 652008373 652008201 7.320000e-28 135.0
23 TraesCS1A01G010700 chr6D 92.857 238 14 3 3483 3720 50183500 50183266 4.020000e-90 342.0
24 TraesCS1A01G010700 chr6D 90.050 201 18 2 3711 3910 235137377 235137178 4.160000e-65 259.0
25 TraesCS1A01G010700 chr6D 93.976 166 10 0 3746 3911 109240318 109240483 6.970000e-63 252.0
26 TraesCS1A01G010700 chr6D 79.331 329 49 13 828 1147 269761965 269761647 3.290000e-51 213.0
27 TraesCS1A01G010700 chr6D 90.604 149 14 0 3907 4055 50183269 50183121 9.200000e-47 198.0
28 TraesCS1A01G010700 chr6D 87.121 132 16 1 2806 2937 373340476 373340346 9.400000e-32 148.0
29 TraesCS1A01G010700 chr6D 88.889 108 12 0 3868 3975 46442034 46442141 2.630000e-27 134.0
30 TraesCS1A01G010700 chr6D 88.636 88 10 0 4109 4196 50183124 50183037 1.600000e-19 108.0
31 TraesCS1A01G010700 chr6D 93.333 45 3 0 3644 3688 50183280 50183236 2.710000e-07 67.6
32 TraesCS1A01G010700 chr6A 91.983 237 17 1 3483 3717 64904828 64905064 8.700000e-87 331.0
33 TraesCS1A01G010700 chr6A 88.938 226 18 2 3470 3688 64664907 64665132 5.350000e-69 272.0
34 TraesCS1A01G010700 chr6A 93.220 177 12 0 3746 3922 204007918 204007742 1.160000e-65 261.0
35 TraesCS1A01G010700 chr6A 94.675 169 8 1 3746 3914 550716827 550716660 1.160000e-65 261.0
36 TraesCS1A01G010700 chr6A 78.723 329 50 14 828 1147 384089322 384089005 7.120000e-48 202.0
37 TraesCS1A01G010700 chr6A 90.909 88 8 0 4109 4196 64905211 64905298 7.370000e-23 119.0
38 TraesCS1A01G010700 chr6B 92.825 223 15 1 3491 3713 121429024 121429245 5.230000e-84 322.0
39 TraesCS1A01G010700 chr6B 78.313 332 47 16 828 1147 422359550 422359232 1.540000e-44 191.0
40 TraesCS1A01G010700 chr6B 88.889 108 12 0 3868 3975 115524054 115524161 2.630000e-27 134.0
41 TraesCS1A01G010700 chr6B 87.963 108 13 0 3868 3975 114976429 114976536 1.220000e-25 128.0
42 TraesCS1A01G010700 chr6B 84.211 95 9 4 7 101 67127399 67127311 2.080000e-13 87.9
43 TraesCS1A01G010700 chr6B 83.908 87 10 3 15 101 67319951 67319869 3.480000e-11 80.5
44 TraesCS1A01G010700 chr6B 90.000 50 2 1 3632 3681 114869085 114869131 1.260000e-05 62.1
45 TraesCS1A01G010700 chr5A 97.059 170 5 0 3741 3910 558684595 558684764 1.910000e-73 287.0
46 TraesCS1A01G010700 chr4D 94.767 172 8 1 3743 3913 28983049 28982878 2.490000e-67 267.0
47 TraesCS1A01G010700 chr7D 94.220 173 10 0 3739 3911 530406729 530406901 8.950000e-67 265.0
48 TraesCS1A01G010700 chr7D 90.957 188 15 2 3724 3911 37292835 37293020 6.970000e-63 252.0
49 TraesCS1A01G010700 chr7D 93.750 128 6 1 3470 3595 412179486 412179613 1.540000e-44 191.0
50 TraesCS1A01G010700 chr4B 79.433 141 19 5 2972 3105 42141609 42141746 1.610000e-14 91.6


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G010700 chr1A 6471656 6475852 4196 True 2377.400000 4084 100.000000 1 4197 3 chr1A.!!$R3 4196
1 TraesCS1A01G010700 chr3A 177677260 177680988 3728 False 1652.925000 3919 98.785250 1 4197 4 chr3A.!!$F1 4196
2 TraesCS1A01G010700 chr3A 31806116 31807462 1346 True 629.733333 1356 95.964667 2758 4197 3 chr3A.!!$R1 1439
3 TraesCS1A01G010700 chr7B 616827346 616828758 1412 True 646.666667 736 92.023000 742 2139 3 chr7B.!!$R2 1397
4 TraesCS1A01G010700 chr7B 616755453 616756857 1404 True 366.250000 623 88.277000 742 2758 4 chr7B.!!$R1 2016
5 TraesCS1A01G010700 chr7A 652008201 652009245 1044 True 361.666667 545 84.623000 730 2758 3 chr7A.!!$R1 2028

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
84 85 0.338814 TCCCTCTCCCTTGTCTACCC 59.661 60.0 0.0 0.0 0.0 3.69 F
85 86 1.043673 CCCTCTCCCTTGTCTACCCG 61.044 65.0 0.0 0.0 0.0 5.28 F
86 87 1.677637 CCTCTCCCTTGTCTACCCGC 61.678 65.0 0.0 0.0 0.0 6.13 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1081 1102 3.837213 AACAGTGCTGCAATGTCATAC 57.163 42.857 32.04 5.37 41.85 2.39 R
2150 2242 1.765230 ACGTGTTAAAAAGCCCCACA 58.235 45.000 0.00 0.00 0.00 4.17 R
3255 3492 1.469595 CGACGCGTTGGGGATAAACTA 60.470 52.381 19.10 0.00 0.00 2.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
83 84 1.288335 TCTCCCTCTCCCTTGTCTACC 59.712 57.143 0.00 0.00 0.00 3.18
84 85 0.338814 TCCCTCTCCCTTGTCTACCC 59.661 60.000 0.00 0.00 0.00 3.69
85 86 1.043673 CCCTCTCCCTTGTCTACCCG 61.044 65.000 0.00 0.00 0.00 5.28
86 87 1.677637 CCTCTCCCTTGTCTACCCGC 61.678 65.000 0.00 0.00 0.00 6.13
87 88 1.677637 CTCTCCCTTGTCTACCCGCC 61.678 65.000 0.00 0.00 0.00 6.13
88 89 3.072468 TCCCTTGTCTACCCGCCG 61.072 66.667 0.00 0.00 0.00 6.46
130 131 3.636231 CCTCCCCAACCGCTGACA 61.636 66.667 0.00 0.00 0.00 3.58
141 142 2.971598 CGCTGACATTCCCACCCCT 61.972 63.158 0.00 0.00 0.00 4.79
463 464 1.783250 AAGCAGCACCAACCCTAGCT 61.783 55.000 0.00 0.00 37.95 3.32
553 554 3.775316 TCTCTGGTTTTCTACATCCCCTC 59.225 47.826 0.00 0.00 0.00 4.30
578 579 9.078990 TCTCGCTTTATATATCTTCTCTGGAAA 57.921 33.333 0.00 0.00 0.00 3.13
913 928 5.193679 GCTGGGAGGTTACAAGATGTTTAT 58.806 41.667 0.00 0.00 0.00 1.40
914 929 5.066505 GCTGGGAGGTTACAAGATGTTTATG 59.933 44.000 0.00 0.00 0.00 1.90
915 930 6.134535 TGGGAGGTTACAAGATGTTTATGT 57.865 37.500 0.00 0.00 0.00 2.29
916 931 7.260387 TGGGAGGTTACAAGATGTTTATGTA 57.740 36.000 0.00 0.00 0.00 2.29
917 932 7.691213 TGGGAGGTTACAAGATGTTTATGTAA 58.309 34.615 0.00 0.00 37.24 2.41
1060 1081 8.806429 TTGTGCATCTTTCTATCCTGAAATTA 57.194 30.769 0.00 0.00 35.68 1.40
1081 1102 8.470040 AATTATGCTGAAGTGCAAGTAATTTG 57.530 30.769 0.00 0.00 46.61 2.32
2150 2242 2.960819 ACTCACGAGCGCTAATTTCTT 58.039 42.857 11.50 0.00 0.00 2.52
2191 2283 6.423001 ACGTAAATTATCGCTATCACCCTTTC 59.577 38.462 0.00 0.00 0.00 2.62
3255 3492 1.002069 TGGCTGGGTTGAGGATGATT 58.998 50.000 0.00 0.00 0.00 2.57
3260 3497 4.273318 GCTGGGTTGAGGATGATTAGTTT 58.727 43.478 0.00 0.00 0.00 2.66
3292 3529 2.813908 GCCGTGTGTCCATCCGAC 60.814 66.667 0.00 0.00 42.33 4.79
3418 3655 3.325870 TGTACCTTCATGCTCTTTGACG 58.674 45.455 0.00 0.00 0.00 4.35
3754 4037 9.251440 TGTATGTATGTATGTATTACTCCCTCC 57.749 37.037 0.00 0.00 0.00 4.30
3755 4038 6.829229 TGTATGTATGTATTACTCCCTCCG 57.171 41.667 0.00 0.00 0.00 4.63
3756 4039 6.309357 TGTATGTATGTATTACTCCCTCCGT 58.691 40.000 0.00 0.00 0.00 4.69
3757 4040 6.779049 TGTATGTATGTATTACTCCCTCCGTT 59.221 38.462 0.00 0.00 0.00 4.44
3758 4041 5.779529 TGTATGTATTACTCCCTCCGTTC 57.220 43.478 0.00 0.00 0.00 3.95
3759 4042 4.586001 TGTATGTATTACTCCCTCCGTTCC 59.414 45.833 0.00 0.00 0.00 3.62
3761 4044 4.524802 TGTATTACTCCCTCCGTTCCTA 57.475 45.455 0.00 0.00 0.00 2.94
3762 4045 4.870636 TGTATTACTCCCTCCGTTCCTAA 58.129 43.478 0.00 0.00 0.00 2.69
3765 4048 7.068702 TGTATTACTCCCTCCGTTCCTAAATA 58.931 38.462 0.00 0.00 0.00 1.40
3768 4051 8.731591 ATTACTCCCTCCGTTCCTAAATATAA 57.268 34.615 0.00 0.00 0.00 0.98
3771 4054 6.267242 ACTCCCTCCGTTCCTAAATATAAGTC 59.733 42.308 0.00 0.00 0.00 3.01
3773 4056 6.842807 TCCCTCCGTTCCTAAATATAAGTCTT 59.157 38.462 0.00 0.00 0.00 3.01
3775 4058 7.656542 CCCTCCGTTCCTAAATATAAGTCTTTC 59.343 40.741 0.00 0.00 0.00 2.62
3793 4076 9.921637 AAGTCTTTCTAGAGATTCTAACAAGTG 57.078 33.333 0.00 0.00 0.00 3.16
3794 4077 9.303116 AGTCTTTCTAGAGATTCTAACAAGTGA 57.697 33.333 0.00 0.00 0.00 3.41
3795 4078 9.349145 GTCTTTCTAGAGATTCTAACAAGTGAC 57.651 37.037 0.00 0.00 0.00 3.67
3796 4079 9.303116 TCTTTCTAGAGATTCTAACAAGTGACT 57.697 33.333 0.00 0.00 0.00 3.41
3799 4082 9.516546 TTCTAGAGATTCTAACAAGTGACTACA 57.483 33.333 0.00 0.00 0.00 2.74
3800 4083 9.688091 TCTAGAGATTCTAACAAGTGACTACAT 57.312 33.333 0.00 0.00 0.00 2.29
3803 4086 9.244292 AGAGATTCTAACAAGTGACTACATACA 57.756 33.333 0.00 0.00 0.00 2.29
3859 4142 7.860918 ATGTCTATATACATCCGTATGTCGT 57.139 36.000 0.00 0.00 42.92 4.34
3860 4143 7.677454 TGTCTATATACATCCGTATGTCGTT 57.323 36.000 0.00 0.00 42.92 3.85
3861 4144 7.524065 TGTCTATATACATCCGTATGTCGTTG 58.476 38.462 0.00 0.00 42.92 4.10
3862 4145 7.173735 TGTCTATATACATCCGTATGTCGTTGT 59.826 37.037 0.00 0.00 42.92 3.32
3863 4146 7.691463 GTCTATATACATCCGTATGTCGTTGTC 59.309 40.741 0.00 0.00 42.92 3.18
3864 4147 2.288961 ACATCCGTATGTCGTTGTCC 57.711 50.000 0.00 0.00 42.92 4.02
3865 4148 1.546923 ACATCCGTATGTCGTTGTCCA 59.453 47.619 0.00 0.00 42.92 4.02
3866 4149 2.167693 ACATCCGTATGTCGTTGTCCAT 59.832 45.455 0.00 0.00 42.92 3.41
3867 4150 3.194861 CATCCGTATGTCGTTGTCCATT 58.805 45.455 0.00 0.00 37.94 3.16
3868 4151 3.322211 TCCGTATGTCGTTGTCCATTT 57.678 42.857 0.00 0.00 37.94 2.32
3869 4152 2.997303 TCCGTATGTCGTTGTCCATTTG 59.003 45.455 0.00 0.00 37.94 2.32
3870 4153 2.997303 CCGTATGTCGTTGTCCATTTGA 59.003 45.455 0.00 0.00 37.94 2.69
3871 4154 3.433957 CCGTATGTCGTTGTCCATTTGAA 59.566 43.478 0.00 0.00 37.94 2.69
3872 4155 4.083749 CCGTATGTCGTTGTCCATTTGAAA 60.084 41.667 0.00 0.00 37.94 2.69
3873 4156 5.391523 CCGTATGTCGTTGTCCATTTGAAAT 60.392 40.000 0.00 0.00 37.94 2.17
3874 4157 5.507876 CGTATGTCGTTGTCCATTTGAAATG 59.492 40.000 10.84 10.84 34.52 2.32
3875 4158 4.909696 TGTCGTTGTCCATTTGAAATGT 57.090 36.364 15.93 0.00 0.00 2.71
3876 4159 4.854399 TGTCGTTGTCCATTTGAAATGTC 58.146 39.130 15.93 9.53 0.00 3.06
3877 4160 4.578516 TGTCGTTGTCCATTTGAAATGTCT 59.421 37.500 15.93 0.00 0.00 3.41
3878 4161 5.760743 TGTCGTTGTCCATTTGAAATGTCTA 59.239 36.000 15.93 4.32 0.00 2.59
3879 4162 6.261158 TGTCGTTGTCCATTTGAAATGTCTAA 59.739 34.615 15.93 5.71 0.00 2.10
3880 4163 7.136119 GTCGTTGTCCATTTGAAATGTCTAAA 58.864 34.615 15.93 3.49 0.00 1.85
3881 4164 7.646130 GTCGTTGTCCATTTGAAATGTCTAAAA 59.354 33.333 15.93 1.40 0.00 1.52
3882 4165 8.191446 TCGTTGTCCATTTGAAATGTCTAAAAA 58.809 29.630 15.93 0.00 0.00 1.94
3883 4166 8.479280 CGTTGTCCATTTGAAATGTCTAAAAAG 58.521 33.333 15.93 2.94 0.00 2.27
3884 4167 9.528018 GTTGTCCATTTGAAATGTCTAAAAAGA 57.472 29.630 15.93 1.84 0.00 2.52
3885 4168 9.528018 TTGTCCATTTGAAATGTCTAAAAAGAC 57.472 29.630 15.93 12.86 39.15 3.01
3886 4169 8.912988 TGTCCATTTGAAATGTCTAAAAAGACT 58.087 29.630 15.93 0.00 39.41 3.24
3887 4170 9.750125 GTCCATTTGAAATGTCTAAAAAGACTT 57.250 29.630 15.93 0.00 39.41 3.01
3905 4188 9.868160 AAAAGACTTATATTTAGGAATGGAGGG 57.132 33.333 0.00 0.00 0.00 4.30
3906 4189 8.814448 AAGACTTATATTTAGGAATGGAGGGA 57.186 34.615 0.00 0.00 0.00 4.20
3907 4190 8.442660 AGACTTATATTTAGGAATGGAGGGAG 57.557 38.462 0.00 0.00 0.00 4.30
4028 4312 4.788617 AGGACCCATTAGTACATTCAGGTT 59.211 41.667 0.00 0.00 0.00 3.50
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
41 42 0.833287 AATCGAGGGATGGTGACTGG 59.167 55.000 0.00 0.00 31.83 4.00
106 107 2.926242 GGTTGGGGAGGTCGTGGA 60.926 66.667 0.00 0.00 0.00 4.02
130 131 2.206223 GAGAAGGTAAGGGGTGGGAAT 58.794 52.381 0.00 0.00 0.00 3.01
141 142 1.628846 GGTGAGGCAAGGAGAAGGTAA 59.371 52.381 0.00 0.00 0.00 2.85
207 208 2.222953 CTGAACGGTAAACAGCGCCG 62.223 60.000 2.29 0.00 0.00 6.46
463 464 1.071542 TGGGTCGTCATTGAAGCAAGA 59.928 47.619 0.00 0.00 0.00 3.02
553 554 9.868277 ATTTCCAGAGAAGATATATAAAGCGAG 57.132 33.333 0.00 0.00 32.35 5.03
587 588 8.703378 AGAAAGAGAGAGTCAATTTCCAAAAT 57.297 30.769 0.00 0.00 31.69 1.82
677 680 7.168219 ACAACCAACTGAGATTCTAATAGCAA 58.832 34.615 0.00 0.00 0.00 3.91
913 928 5.515886 CCCCCTTTTCAGTCCTTACATTACA 60.516 44.000 0.00 0.00 0.00 2.41
914 929 4.948004 CCCCCTTTTCAGTCCTTACATTAC 59.052 45.833 0.00 0.00 0.00 1.89
915 930 4.604490 ACCCCCTTTTCAGTCCTTACATTA 59.396 41.667 0.00 0.00 0.00 1.90
916 931 3.401342 ACCCCCTTTTCAGTCCTTACATT 59.599 43.478 0.00 0.00 0.00 2.71
917 932 2.993863 ACCCCCTTTTCAGTCCTTACAT 59.006 45.455 0.00 0.00 0.00 2.29
1060 1081 5.458041 ACAAATTACTTGCACTTCAGCAT 57.542 34.783 0.00 0.00 45.19 3.79
1081 1102 3.837213 AACAGTGCTGCAATGTCATAC 57.163 42.857 32.04 5.37 41.85 2.39
2150 2242 1.765230 ACGTGTTAAAAAGCCCCACA 58.235 45.000 0.00 0.00 0.00 4.17
3255 3492 1.469595 CGACGCGTTGGGGATAAACTA 60.470 52.381 19.10 0.00 0.00 2.24
3260 3497 4.517815 GGCGACGCGTTGGGGATA 62.518 66.667 27.02 0.00 0.00 2.59
3292 3529 2.473816 TGTTGACAGCTCTCTTGTTCG 58.526 47.619 0.00 0.00 0.00 3.95
3745 4028 7.300658 ACTTATATTTAGGAACGGAGGGAGTA 58.699 38.462 0.00 0.00 0.00 2.59
3746 4029 6.141790 ACTTATATTTAGGAACGGAGGGAGT 58.858 40.000 0.00 0.00 0.00 3.85
3747 4030 6.494146 AGACTTATATTTAGGAACGGAGGGAG 59.506 42.308 0.00 0.00 0.00 4.30
3748 4031 6.379579 AGACTTATATTTAGGAACGGAGGGA 58.620 40.000 0.00 0.00 0.00 4.20
3749 4032 6.667558 AGACTTATATTTAGGAACGGAGGG 57.332 41.667 0.00 0.00 0.00 4.30
3750 4033 8.422566 AGAAAGACTTATATTTAGGAACGGAGG 58.577 37.037 0.00 0.00 0.00 4.30
3768 4051 9.303116 TCACTTGTTAGAATCTCTAGAAAGACT 57.697 33.333 0.00 0.00 32.30 3.24
3773 4056 9.516546 TGTAGTCACTTGTTAGAATCTCTAGAA 57.483 33.333 0.00 0.00 29.56 2.10
3777 4060 9.244292 TGTATGTAGTCACTTGTTAGAATCTCT 57.756 33.333 0.00 0.00 0.00 3.10
3801 4084 9.950496 AGTGTAGATTCACTCATTTTTCTATGT 57.050 29.630 0.00 0.00 44.07 2.29
3833 4116 9.557061 ACGACATACGGATGTATATAGACATAT 57.443 33.333 14.70 5.08 46.64 1.78
3834 4117 8.953368 ACGACATACGGATGTATATAGACATA 57.047 34.615 14.70 0.00 46.64 2.29
3835 4118 7.860918 ACGACATACGGATGTATATAGACAT 57.139 36.000 14.70 12.70 46.64 3.06
3836 4119 7.173735 ACAACGACATACGGATGTATATAGACA 59.826 37.037 14.70 2.07 46.64 3.41
3837 4120 7.524912 ACAACGACATACGGATGTATATAGAC 58.475 38.462 14.70 0.00 46.64 2.59
3838 4121 7.148356 GGACAACGACATACGGATGTATATAGA 60.148 40.741 14.70 0.00 46.64 1.98
3839 4122 6.965500 GGACAACGACATACGGATGTATATAG 59.035 42.308 14.70 5.74 46.64 1.31
3840 4123 6.430616 TGGACAACGACATACGGATGTATATA 59.569 38.462 14.70 0.00 46.64 0.86
3841 4124 5.242171 TGGACAACGACATACGGATGTATAT 59.758 40.000 14.70 0.00 46.64 0.86
3842 4125 4.579753 TGGACAACGACATACGGATGTATA 59.420 41.667 14.70 0.00 46.64 1.47
3843 4126 3.382227 TGGACAACGACATACGGATGTAT 59.618 43.478 14.70 1.66 46.64 2.29
3844 4127 2.754002 TGGACAACGACATACGGATGTA 59.246 45.455 14.70 0.00 46.64 2.29
3851 4134 6.378582 ACATTTCAAATGGACAACGACATAC 58.621 36.000 14.70 0.00 0.00 2.39
3852 4135 6.429692 AGACATTTCAAATGGACAACGACATA 59.570 34.615 14.70 0.00 0.00 2.29
3853 4136 5.241506 AGACATTTCAAATGGACAACGACAT 59.758 36.000 14.70 0.00 0.00 3.06
3854 4137 4.578516 AGACATTTCAAATGGACAACGACA 59.421 37.500 14.70 0.00 0.00 4.35
3855 4138 5.108385 AGACATTTCAAATGGACAACGAC 57.892 39.130 14.70 0.00 0.00 4.34
3856 4139 6.869315 TTAGACATTTCAAATGGACAACGA 57.131 33.333 14.70 0.00 0.00 3.85
3857 4140 7.922505 TTTTAGACATTTCAAATGGACAACG 57.077 32.000 14.70 0.00 0.00 4.10
3858 4141 9.528018 TCTTTTTAGACATTTCAAATGGACAAC 57.472 29.630 14.70 1.26 0.00 3.32
3859 4142 9.528018 GTCTTTTTAGACATTTCAAATGGACAA 57.472 29.630 14.70 2.31 38.59 3.18
3860 4143 8.912988 AGTCTTTTTAGACATTTCAAATGGACA 58.087 29.630 14.70 0.00 41.02 4.02
3861 4144 9.750125 AAGTCTTTTTAGACATTTCAAATGGAC 57.250 29.630 14.70 8.92 41.02 4.02
3879 4162 9.868160 CCCTCCATTCCTAAATATAAGTCTTTT 57.132 33.333 0.00 0.00 0.00 2.27
3880 4163 9.237706 TCCCTCCATTCCTAAATATAAGTCTTT 57.762 33.333 0.00 0.00 0.00 2.52
3881 4164 8.814448 TCCCTCCATTCCTAAATATAAGTCTT 57.186 34.615 0.00 0.00 0.00 3.01
3882 4165 8.019652 ACTCCCTCCATTCCTAAATATAAGTCT 58.980 37.037 0.00 0.00 0.00 3.24
3883 4166 8.208575 ACTCCCTCCATTCCTAAATATAAGTC 57.791 38.462 0.00 0.00 0.00 3.01
3884 4167 9.102453 GTACTCCCTCCATTCCTAAATATAAGT 57.898 37.037 0.00 0.00 0.00 2.24
3885 4168 9.327731 AGTACTCCCTCCATTCCTAAATATAAG 57.672 37.037 0.00 0.00 0.00 1.73
3886 4169 9.684702 AAGTACTCCCTCCATTCCTAAATATAA 57.315 33.333 0.00 0.00 0.00 0.98
3887 4170 9.101325 CAAGTACTCCCTCCATTCCTAAATATA 57.899 37.037 0.00 0.00 0.00 0.86
3888 4171 7.017651 CCAAGTACTCCCTCCATTCCTAAATAT 59.982 40.741 0.00 0.00 0.00 1.28
3889 4172 6.329197 CCAAGTACTCCCTCCATTCCTAAATA 59.671 42.308 0.00 0.00 0.00 1.40
3890 4173 5.132816 CCAAGTACTCCCTCCATTCCTAAAT 59.867 44.000 0.00 0.00 0.00 1.40
3891 4174 4.473559 CCAAGTACTCCCTCCATTCCTAAA 59.526 45.833 0.00 0.00 0.00 1.85
3892 4175 4.037927 CCAAGTACTCCCTCCATTCCTAA 58.962 47.826 0.00 0.00 0.00 2.69
3893 4176 3.013648 ACCAAGTACTCCCTCCATTCCTA 59.986 47.826 0.00 0.00 0.00 2.94
3894 4177 2.225908 ACCAAGTACTCCCTCCATTCCT 60.226 50.000 0.00 0.00 0.00 3.36
3895 4178 2.197465 ACCAAGTACTCCCTCCATTCC 58.803 52.381 0.00 0.00 0.00 3.01
3896 4179 4.031611 ACTACCAAGTACTCCCTCCATTC 58.968 47.826 0.00 0.00 32.84 2.67
3897 4180 3.775316 CACTACCAAGTACTCCCTCCATT 59.225 47.826 0.00 0.00 33.48 3.16
3898 4181 3.375699 CACTACCAAGTACTCCCTCCAT 58.624 50.000 0.00 0.00 33.48 3.41
3899 4182 2.559026 CCACTACCAAGTACTCCCTCCA 60.559 54.545 0.00 0.00 33.48 3.86
3900 4183 2.108970 CCACTACCAAGTACTCCCTCC 58.891 57.143 0.00 0.00 33.48 4.30
3901 4184 2.817665 ACCACTACCAAGTACTCCCTC 58.182 52.381 0.00 0.00 33.48 4.30
3902 4185 3.271153 AACCACTACCAAGTACTCCCT 57.729 47.619 0.00 0.00 33.48 4.20
3903 4186 4.529769 AGTAAACCACTACCAAGTACTCCC 59.470 45.833 0.00 0.00 34.98 4.30
3904 4187 5.479724 AGAGTAAACCACTACCAAGTACTCC 59.520 44.000 0.00 0.00 37.16 3.85
3905 4188 6.388278 CAGAGTAAACCACTACCAAGTACTC 58.612 44.000 0.00 0.00 37.72 2.59
3906 4189 5.279356 GCAGAGTAAACCACTACCAAGTACT 60.279 44.000 0.00 0.00 37.72 2.73
3907 4190 4.928020 GCAGAGTAAACCACTACCAAGTAC 59.072 45.833 0.00 0.00 37.72 2.73
4028 4312 2.392662 CTCTAGTCCTCTTGCCATCCA 58.607 52.381 0.00 0.00 0.00 3.41


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.