Multiple sequence alignment - TraesCS1A01G009700

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G009700 chr1A 100.000 2581 0 0 1 2581 6024436 6021856 0.000000e+00 4767
1 TraesCS1A01G009700 chr1D 90.471 1763 132 17 1 1744 3451099 3452844 0.000000e+00 2292
2 TraesCS1A01G009700 chr1D 75.026 977 147 46 914 1859 4354935 4354025 1.890000e-96 363
3 TraesCS1A01G009700 chr1D 83.871 403 38 7 1 384 3998293 3997899 2.440000e-95 359
4 TraesCS1A01G009700 chr1D 85.902 305 24 9 1 289 4979960 4979659 8.970000e-80 307
5 TraesCS1A01G009700 chr1D 81.449 345 35 13 1 325 3380924 3381259 3.300000e-64 255
6 TraesCS1A01G009700 chr1D 87.912 91 11 0 376 466 4979653 4979563 9.770000e-20 108
7 TraesCS1A01G009700 chr1B 90.414 1763 126 22 1 1753 7363738 7365467 0.000000e+00 2279
8 TraesCS1A01G009700 chr1B 89.419 1257 109 14 490 1744 22275185 22273951 0.000000e+00 1563
9 TraesCS1A01G009700 chr1B 88.934 1238 107 21 507 1738 7553172 7551959 0.000000e+00 1500
10 TraesCS1A01G009700 chr1B 88.530 1238 111 22 507 1738 7544640 7543428 0.000000e+00 1471
11 TraesCS1A01G009700 chr1B 88.368 1238 113 21 507 1738 7548902 7547690 0.000000e+00 1459
12 TraesCS1A01G009700 chr1B 89.238 1115 101 10 589 1702 17254475 17255571 0.000000e+00 1376
13 TraesCS1A01G009700 chr1B 88.802 643 60 7 1071 1713 6575039 6574409 0.000000e+00 778
14 TraesCS1A01G009700 chr1B 76.413 1115 171 57 786 1859 7304676 7305739 3.810000e-143 518
15 TraesCS1A01G009700 chr1B 81.522 276 31 10 1 261 7406812 7407082 2.600000e-50 209
16 TraesCS1A01G009700 chr1B 89.764 127 7 4 941 1066 6579029 6578908 9.560000e-35 158
17 TraesCS1A01G009700 chr1B 90.654 107 10 0 782 888 6579155 6579049 2.680000e-30 143
18 TraesCS1A01G009700 chr2D 87.931 406 36 11 2182 2581 46371688 46372086 1.400000e-127 466
19 TraesCS1A01G009700 chr7D 87.089 395 29 13 2198 2581 629584946 629584563 6.600000e-116 427
20 TraesCS1A01G009700 chr7D 88.462 364 25 10 2198 2552 629588703 629588348 8.540000e-115 424
21 TraesCS1A01G009700 chr7D 86.224 392 33 9 2198 2581 486108526 486108148 3.090000e-109 405
22 TraesCS1A01G009700 chr7D 85.459 392 45 10 2197 2581 247320086 247320472 5.170000e-107 398
23 TraesCS1A01G009700 chr7D 85.938 384 34 13 2208 2581 80278590 80278963 2.410000e-105 392
24 TraesCS1A01G009700 chr6D 85.316 395 41 9 2193 2581 414774930 414774547 2.410000e-105 392
25 TraesCS1A01G009700 chr6D 84.788 401 37 18 2191 2581 463720794 463720408 5.210000e-102 381
26 TraesCS1A01G009700 chr7A 85.530 387 41 11 2198 2581 202363032 202362658 8.660000e-105 390


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G009700 chr1A 6021856 6024436 2580 True 4767.000000 4767 100.000000 1 2581 1 chr1A.!!$R1 2580
1 TraesCS1A01G009700 chr1D 3451099 3452844 1745 False 2292.000000 2292 90.471000 1 1744 1 chr1D.!!$F2 1743
2 TraesCS1A01G009700 chr1D 4354025 4354935 910 True 363.000000 363 75.026000 914 1859 1 chr1D.!!$R2 945
3 TraesCS1A01G009700 chr1B 7363738 7365467 1729 False 2279.000000 2279 90.414000 1 1753 1 chr1B.!!$F2 1752
4 TraesCS1A01G009700 chr1B 22273951 22275185 1234 True 1563.000000 1563 89.419000 490 1744 1 chr1B.!!$R1 1254
5 TraesCS1A01G009700 chr1B 7543428 7553172 9744 True 1476.666667 1500 88.610667 507 1738 3 chr1B.!!$R3 1231
6 TraesCS1A01G009700 chr1B 17254475 17255571 1096 False 1376.000000 1376 89.238000 589 1702 1 chr1B.!!$F4 1113
7 TraesCS1A01G009700 chr1B 7304676 7305739 1063 False 518.000000 518 76.413000 786 1859 1 chr1B.!!$F1 1073
8 TraesCS1A01G009700 chr1B 6574409 6579155 4746 True 359.666667 778 89.740000 782 1713 3 chr1B.!!$R2 931
9 TraesCS1A01G009700 chr7D 629584563 629588703 4140 True 425.500000 427 87.775500 2198 2581 2 chr7D.!!$R2 383

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
792 818 0.248377 GCACTACGGCACTAGTACGG 60.248 60.0 19.35 10.77 0.0 4.02 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2055 14531 0.106116 GATGGTCTCCCCTCTACCGT 60.106 60.0 0.0 0.0 35.98 4.83 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.496070 TCTTATCAGAGTCCACAACCCG 59.504 50.000 0.00 0.00 0.00 5.28
125 141 1.078528 TTGGCTCCTCTCCTTCCGA 59.921 57.895 0.00 0.00 0.00 4.55
140 156 2.885644 CGATGGTTCGTCAGGCGG 60.886 66.667 0.00 0.00 40.53 6.13
199 215 5.008613 GCTCTAGTCTCCTTGATGACTACAG 59.991 48.000 0.00 0.00 42.67 2.74
207 223 3.306989 CCTTGATGACTACAGTGGCAGAA 60.307 47.826 0.00 0.00 0.00 3.02
261 277 0.249405 CCAAAGTTGTTGCCGTGCAT 60.249 50.000 0.00 0.00 38.76 3.96
301 317 1.327690 GGAGGTCCATGACTACGGCA 61.328 60.000 0.00 0.00 35.64 5.69
312 329 2.284331 TACGGCAAGGAGGAGGCA 60.284 61.111 0.00 0.00 0.00 4.75
465 482 3.181461 CGGTCCTTCATCCTTAGAGCATT 60.181 47.826 0.00 0.00 0.00 3.56
488 505 1.870402 CAGTCGCACACACCAAATACA 59.130 47.619 0.00 0.00 0.00 2.29
546 563 2.106566 TGAGTTTGTTGGTGGCACATT 58.893 42.857 20.82 0.00 44.52 2.71
560 577 2.289547 GGCACATTTGTTGTCTACACGT 59.710 45.455 0.00 0.00 36.00 4.49
561 578 3.495377 GGCACATTTGTTGTCTACACGTA 59.505 43.478 0.00 0.00 36.00 3.57
562 579 4.451557 GCACATTTGTTGTCTACACGTAC 58.548 43.478 0.00 0.00 36.00 3.67
563 580 4.684008 CACATTTGTTGTCTACACGTACG 58.316 43.478 15.01 15.01 36.00 3.67
577 594 1.337703 ACGTACGCTAGTGGTTGTGAA 59.662 47.619 16.72 0.00 0.00 3.18
589 606 3.558418 GTGGTTGTGAAACGAGTACATGT 59.442 43.478 2.69 2.69 42.39 3.21
638 655 6.914654 TTTGTGGGCAATGCATATATGTAT 57.085 33.333 14.14 12.16 34.50 2.29
692 709 3.286751 GCTGGGCTTGTGTTGCGA 61.287 61.111 0.00 0.00 0.00 5.10
764 790 2.684001 TGTCCTCGTGAAACACAAGT 57.316 45.000 0.00 0.00 35.74 3.16
792 818 0.248377 GCACTACGGCACTAGTACGG 60.248 60.000 19.35 10.77 0.00 4.02
978 1006 6.153680 CCCTGGGTGCTTATAAATAACAAACA 59.846 38.462 3.97 0.00 0.00 2.83
1145 9307 2.282462 CTTCCTTGGGGCGCTGTT 60.282 61.111 7.64 0.00 0.00 3.16
1180 9378 4.325084 AGAAGAACTAGTAGTGGCTCCT 57.675 45.455 2.90 0.00 0.00 3.69
1249 9447 1.194781 GCAGAGTCTCTGTTCCCCCA 61.195 60.000 26.86 0.00 45.94 4.96
1499 9701 6.583806 GTGAAGAATATCAAACACAAAGGCAG 59.416 38.462 0.00 0.00 0.00 4.85
1575 9782 1.281577 TGGATGCTGCCTGTGATTGTA 59.718 47.619 0.00 0.00 0.00 2.41
1635 9845 7.500141 ACGTTGTACCTTTTCTTTACTCCTTA 58.500 34.615 0.00 0.00 0.00 2.69
1695 14167 9.283768 AGGTAATTTTCATTTGGAATTGAAACC 57.716 29.630 8.31 7.67 40.51 3.27
1714 14188 3.334691 ACCCGTCTGTCATGTGTTATTG 58.665 45.455 0.00 0.00 0.00 1.90
1717 14191 3.125146 CCGTCTGTCATGTGTTATTGGTG 59.875 47.826 0.00 0.00 0.00 4.17
1720 14194 5.407084 CGTCTGTCATGTGTTATTGGTGTAA 59.593 40.000 0.00 0.00 0.00 2.41
1775 14251 9.931210 GGATAAATTTGATTTAAGACCTGTACG 57.069 33.333 0.00 0.00 38.15 3.67
1784 14260 8.834465 TGATTTAAGACCTGTACGTAGATAGTC 58.166 37.037 12.50 12.50 0.00 2.59
1793 14269 1.741706 ACGTAGATAGTCGTGGTGGTG 59.258 52.381 0.00 0.00 38.85 4.17
1799 14275 2.434658 TAGTCGTGGTGGTGCTGCTG 62.435 60.000 0.00 0.00 0.00 4.41
1803 14279 2.037136 GTGGTGGTGCTGCTGCTAG 61.037 63.158 17.00 0.00 40.48 3.42
1804 14280 2.437359 GGTGGTGCTGCTGCTAGG 60.437 66.667 17.00 0.00 40.48 3.02
1805 14281 2.665000 GTGGTGCTGCTGCTAGGA 59.335 61.111 17.00 0.00 40.48 2.94
1806 14282 1.743252 GTGGTGCTGCTGCTAGGAC 60.743 63.158 17.00 12.68 40.48 3.85
1807 14283 1.915266 TGGTGCTGCTGCTAGGACT 60.915 57.895 17.00 0.00 38.83 3.85
1808 14284 1.449246 GGTGCTGCTGCTAGGACTG 60.449 63.158 17.00 0.00 38.83 3.51
1809 14285 1.294780 GTGCTGCTGCTAGGACTGT 59.705 57.895 17.00 0.00 40.48 3.55
1820 14296 2.758979 GCTAGGACTGTTGCCACTACTA 59.241 50.000 0.00 0.00 0.00 1.82
1824 14300 2.612221 GGACTGTTGCCACTACTACCAC 60.612 54.545 0.00 0.00 0.00 4.16
1826 14302 3.503365 ACTGTTGCCACTACTACCACTA 58.497 45.455 0.00 0.00 0.00 2.74
1828 14304 4.159879 ACTGTTGCCACTACTACCACTATC 59.840 45.833 0.00 0.00 0.00 2.08
1829 14305 4.090819 TGTTGCCACTACTACCACTATCA 58.909 43.478 0.00 0.00 0.00 2.15
1850 14326 3.193691 CACTGCCACTTACTACTAGCACT 59.806 47.826 0.00 0.00 0.00 4.40
1859 14335 7.130917 CACTTACTACTAGCACTACCATTACG 58.869 42.308 0.00 0.00 0.00 3.18
1860 14336 7.011763 CACTTACTACTAGCACTACCATTACGA 59.988 40.741 0.00 0.00 0.00 3.43
1861 14337 5.747951 ACTACTAGCACTACCATTACGAC 57.252 43.478 0.00 0.00 0.00 4.34
1862 14338 5.435291 ACTACTAGCACTACCATTACGACT 58.565 41.667 0.00 0.00 0.00 4.18
1863 14339 6.586344 ACTACTAGCACTACCATTACGACTA 58.414 40.000 0.00 0.00 0.00 2.59
1864 14340 5.747951 ACTAGCACTACCATTACGACTAC 57.252 43.478 0.00 0.00 0.00 2.73
1865 14341 4.578105 ACTAGCACTACCATTACGACTACC 59.422 45.833 0.00 0.00 0.00 3.18
1866 14342 2.357009 AGCACTACCATTACGACTACCG 59.643 50.000 0.00 0.00 45.44 4.02
1867 14343 2.724349 CACTACCATTACGACTACCGC 58.276 52.381 0.00 0.00 43.32 5.68
1868 14344 1.678101 ACTACCATTACGACTACCGCC 59.322 52.381 0.00 0.00 43.32 6.13
1869 14345 1.677576 CTACCATTACGACTACCGCCA 59.322 52.381 0.00 0.00 43.32 5.69
1870 14346 0.174162 ACCATTACGACTACCGCCAC 59.826 55.000 0.00 0.00 43.32 5.01
1871 14347 0.529119 CCATTACGACTACCGCCACC 60.529 60.000 0.00 0.00 43.32 4.61
1872 14348 0.173935 CATTACGACTACCGCCACCA 59.826 55.000 0.00 0.00 43.32 4.17
1873 14349 0.174162 ATTACGACTACCGCCACCAC 59.826 55.000 0.00 0.00 43.32 4.16
1874 14350 1.876497 TTACGACTACCGCCACCACC 61.876 60.000 0.00 0.00 43.32 4.61
1875 14351 3.687102 CGACTACCGCCACCACCA 61.687 66.667 0.00 0.00 0.00 4.17
1876 14352 2.047560 GACTACCGCCACCACCAC 60.048 66.667 0.00 0.00 0.00 4.16
1877 14353 3.600898 GACTACCGCCACCACCACC 62.601 68.421 0.00 0.00 0.00 4.61
1878 14354 3.632080 CTACCGCCACCACCACCA 61.632 66.667 0.00 0.00 0.00 4.17
1879 14355 3.894547 CTACCGCCACCACCACCAC 62.895 68.421 0.00 0.00 0.00 4.16
1883 14359 4.204028 GCCACCACCACCACCACT 62.204 66.667 0.00 0.00 0.00 4.00
1884 14360 2.824880 GCCACCACCACCACCACTA 61.825 63.158 0.00 0.00 0.00 2.74
1885 14361 1.072505 CCACCACCACCACCACTAC 59.927 63.158 0.00 0.00 0.00 2.73
1886 14362 1.415672 CCACCACCACCACCACTACT 61.416 60.000 0.00 0.00 0.00 2.57
1887 14363 1.344065 CACCACCACCACCACTACTA 58.656 55.000 0.00 0.00 0.00 1.82
1888 14364 1.001633 CACCACCACCACCACTACTAC 59.998 57.143 0.00 0.00 0.00 2.73
1889 14365 1.132945 ACCACCACCACCACTACTACT 60.133 52.381 0.00 0.00 0.00 2.57
1890 14366 1.275291 CCACCACCACCACTACTACTG 59.725 57.143 0.00 0.00 0.00 2.74
1891 14367 0.974383 ACCACCACCACTACTACTGC 59.026 55.000 0.00 0.00 0.00 4.40
1892 14368 0.249398 CCACCACCACTACTACTGCC 59.751 60.000 0.00 0.00 0.00 4.85
1893 14369 1.267121 CACCACCACTACTACTGCCT 58.733 55.000 0.00 0.00 0.00 4.75
1894 14370 2.453521 CACCACCACTACTACTGCCTA 58.546 52.381 0.00 0.00 0.00 3.93
1895 14371 2.829720 CACCACCACTACTACTGCCTAA 59.170 50.000 0.00 0.00 0.00 2.69
1896 14372 3.259876 CACCACCACTACTACTGCCTAAA 59.740 47.826 0.00 0.00 0.00 1.85
1897 14373 4.081087 CACCACCACTACTACTGCCTAAAT 60.081 45.833 0.00 0.00 0.00 1.40
1898 14374 4.534897 ACCACCACTACTACTGCCTAAATT 59.465 41.667 0.00 0.00 0.00 1.82
1899 14375 5.013808 ACCACCACTACTACTGCCTAAATTT 59.986 40.000 0.00 0.00 0.00 1.82
1900 14376 5.944007 CCACCACTACTACTGCCTAAATTTT 59.056 40.000 0.00 0.00 0.00 1.82
1901 14377 6.128007 CCACCACTACTACTGCCTAAATTTTG 60.128 42.308 0.00 0.00 0.00 2.44
1902 14378 5.944007 ACCACTACTACTGCCTAAATTTTGG 59.056 40.000 13.61 13.61 0.00 3.28
1903 14379 5.944007 CCACTACTACTGCCTAAATTTTGGT 59.056 40.000 18.11 3.53 0.00 3.67
1904 14380 6.433093 CCACTACTACTGCCTAAATTTTGGTT 59.567 38.462 18.11 7.43 0.00 3.67
1905 14381 7.608761 CCACTACTACTGCCTAAATTTTGGTTA 59.391 37.037 18.11 8.52 0.00 2.85
1906 14382 9.005777 CACTACTACTGCCTAAATTTTGGTTAA 57.994 33.333 18.11 5.82 0.00 2.01
1907 14383 9.577222 ACTACTACTGCCTAAATTTTGGTTAAA 57.423 29.630 18.11 3.91 0.00 1.52
1910 14386 8.311109 ACTACTGCCTAAATTTTGGTTAAATGG 58.689 33.333 18.11 6.49 36.57 3.16
1911 14387 7.309770 ACTGCCTAAATTTTGGTTAAATGGA 57.690 32.000 18.11 0.00 36.57 3.41
1912 14388 7.917003 ACTGCCTAAATTTTGGTTAAATGGAT 58.083 30.769 18.11 0.00 36.57 3.41
1913 14389 8.040727 ACTGCCTAAATTTTGGTTAAATGGATC 58.959 33.333 18.11 0.83 36.57 3.36
1914 14390 7.911651 TGCCTAAATTTTGGTTAAATGGATCA 58.088 30.769 18.11 3.15 36.57 2.92
1915 14391 8.547173 TGCCTAAATTTTGGTTAAATGGATCAT 58.453 29.630 18.11 0.00 36.57 2.45
1916 14392 9.394767 GCCTAAATTTTGGTTAAATGGATCATT 57.605 29.630 18.11 0.00 36.57 2.57
1927 14403 9.750125 GGTTAAATGGATCATTCAAGATTAACC 57.250 33.333 12.35 12.35 35.02 2.85
1934 14410 9.565090 TGGATCATTCAAGATTAACCTAGAATG 57.435 33.333 12.67 12.67 42.06 2.67
1938 14414 9.958180 TCATTCAAGATTAACCTAGAATGACAA 57.042 29.630 15.56 2.14 43.51 3.18
1939 14415 9.994432 CATTCAAGATTAACCTAGAATGACAAC 57.006 33.333 13.24 0.00 42.86 3.32
1940 14416 9.739276 ATTCAAGATTAACCTAGAATGACAACA 57.261 29.630 0.00 0.00 0.00 3.33
1941 14417 8.547967 TCAAGATTAACCTAGAATGACAACAC 57.452 34.615 0.00 0.00 0.00 3.32
1942 14418 8.154203 TCAAGATTAACCTAGAATGACAACACA 58.846 33.333 0.00 0.00 0.00 3.72
1943 14419 8.783093 CAAGATTAACCTAGAATGACAACACAA 58.217 33.333 0.00 0.00 0.00 3.33
1944 14420 9.520515 AAGATTAACCTAGAATGACAACACAAT 57.479 29.630 0.00 0.00 0.00 2.71
1945 14421 9.520515 AGATTAACCTAGAATGACAACACAATT 57.479 29.630 0.00 0.00 0.00 2.32
1946 14422 9.774742 GATTAACCTAGAATGACAACACAATTC 57.225 33.333 0.00 0.00 0.00 2.17
1947 14423 5.862924 ACCTAGAATGACAACACAATTCG 57.137 39.130 0.00 0.00 0.00 3.34
1948 14424 4.695455 ACCTAGAATGACAACACAATTCGG 59.305 41.667 0.00 0.00 0.00 4.30
1949 14425 3.559238 AGAATGACAACACAATTCGGC 57.441 42.857 0.00 0.00 0.00 5.54
1950 14426 2.884012 AGAATGACAACACAATTCGGCA 59.116 40.909 0.00 0.00 0.00 5.69
1951 14427 2.995466 ATGACAACACAATTCGGCAG 57.005 45.000 0.00 0.00 0.00 4.85
1952 14428 1.674359 TGACAACACAATTCGGCAGT 58.326 45.000 0.00 0.00 0.00 4.40
1953 14429 1.601903 TGACAACACAATTCGGCAGTC 59.398 47.619 0.00 0.00 0.00 3.51
1954 14430 1.873591 GACAACACAATTCGGCAGTCT 59.126 47.619 0.00 0.00 0.00 3.24
1955 14431 3.064207 GACAACACAATTCGGCAGTCTA 58.936 45.455 0.00 0.00 0.00 2.59
1956 14432 3.472652 ACAACACAATTCGGCAGTCTAA 58.527 40.909 0.00 0.00 0.00 2.10
1957 14433 3.880490 ACAACACAATTCGGCAGTCTAAA 59.120 39.130 0.00 0.00 0.00 1.85
1958 14434 4.518970 ACAACACAATTCGGCAGTCTAAAT 59.481 37.500 0.00 0.00 0.00 1.40
1959 14435 4.685169 ACACAATTCGGCAGTCTAAATG 57.315 40.909 0.00 0.00 0.00 2.32
1960 14436 4.072131 ACACAATTCGGCAGTCTAAATGT 58.928 39.130 0.00 0.00 0.00 2.71
1961 14437 5.242434 ACACAATTCGGCAGTCTAAATGTA 58.758 37.500 0.00 0.00 0.00 2.29
1962 14438 5.880332 ACACAATTCGGCAGTCTAAATGTAT 59.120 36.000 0.00 0.00 0.00 2.29
1963 14439 6.183360 ACACAATTCGGCAGTCTAAATGTATG 60.183 38.462 0.00 0.00 0.00 2.39
1964 14440 6.037062 CACAATTCGGCAGTCTAAATGTATGA 59.963 38.462 0.00 0.00 0.00 2.15
1965 14441 6.767902 ACAATTCGGCAGTCTAAATGTATGAT 59.232 34.615 0.00 0.00 0.00 2.45
1966 14442 7.283127 ACAATTCGGCAGTCTAAATGTATGATT 59.717 33.333 0.00 0.00 0.00 2.57
1967 14443 6.603237 TTCGGCAGTCTAAATGTATGATTG 57.397 37.500 0.00 0.00 0.00 2.67
1968 14444 5.912892 TCGGCAGTCTAAATGTATGATTGA 58.087 37.500 0.00 0.00 0.00 2.57
1969 14445 6.345298 TCGGCAGTCTAAATGTATGATTGAA 58.655 36.000 0.00 0.00 0.00 2.69
1970 14446 6.821160 TCGGCAGTCTAAATGTATGATTGAAA 59.179 34.615 0.00 0.00 0.00 2.69
1971 14447 7.011389 TCGGCAGTCTAAATGTATGATTGAAAG 59.989 37.037 0.00 0.00 0.00 2.62
1972 14448 7.420800 GGCAGTCTAAATGTATGATTGAAAGG 58.579 38.462 0.00 0.00 0.00 3.11
1973 14449 7.283127 GGCAGTCTAAATGTATGATTGAAAGGA 59.717 37.037 0.00 0.00 0.00 3.36
1974 14450 8.341173 GCAGTCTAAATGTATGATTGAAAGGAG 58.659 37.037 0.00 0.00 0.00 3.69
1975 14451 8.341173 CAGTCTAAATGTATGATTGAAAGGAGC 58.659 37.037 0.00 0.00 0.00 4.70
1976 14452 8.270744 AGTCTAAATGTATGATTGAAAGGAGCT 58.729 33.333 0.00 0.00 0.00 4.09
1977 14453 8.897752 GTCTAAATGTATGATTGAAAGGAGCTT 58.102 33.333 0.00 0.00 0.00 3.74
1984 14460 7.975616 TGTATGATTGAAAGGAGCTTAATTTGC 59.024 33.333 0.00 0.00 0.00 3.68
1985 14461 6.343716 TGATTGAAAGGAGCTTAATTTGCA 57.656 33.333 0.00 0.00 0.00 4.08
1986 14462 6.938507 TGATTGAAAGGAGCTTAATTTGCAT 58.061 32.000 0.00 0.00 0.00 3.96
1987 14463 6.814644 TGATTGAAAGGAGCTTAATTTGCATG 59.185 34.615 0.00 0.00 0.00 4.06
1988 14464 4.497300 TGAAAGGAGCTTAATTTGCATGC 58.503 39.130 11.82 11.82 0.00 4.06
1989 14465 4.221262 TGAAAGGAGCTTAATTTGCATGCT 59.779 37.500 20.33 0.00 36.63 3.79
1990 14466 5.418524 TGAAAGGAGCTTAATTTGCATGCTA 59.581 36.000 20.33 8.83 33.83 3.49
1991 14467 6.097270 TGAAAGGAGCTTAATTTGCATGCTAT 59.903 34.615 20.33 9.60 33.83 2.97
1992 14468 7.285172 TGAAAGGAGCTTAATTTGCATGCTATA 59.715 33.333 20.33 4.27 33.83 1.31
1993 14469 7.771927 AAGGAGCTTAATTTGCATGCTATAT 57.228 32.000 20.33 6.59 33.83 0.86
1994 14470 7.771927 AGGAGCTTAATTTGCATGCTATATT 57.228 32.000 20.33 16.42 33.83 1.28
1995 14471 8.868522 AGGAGCTTAATTTGCATGCTATATTA 57.131 30.769 20.33 15.48 33.83 0.98
1996 14472 9.300681 AGGAGCTTAATTTGCATGCTATATTAA 57.699 29.630 20.33 20.57 33.83 1.40
2005 14481 9.643693 ATTTGCATGCTATATTAATTAGTTGCC 57.356 29.630 20.33 0.00 0.00 4.52
2006 14482 7.757941 TGCATGCTATATTAATTAGTTGCCA 57.242 32.000 20.33 0.00 0.00 4.92
2007 14483 7.592938 TGCATGCTATATTAATTAGTTGCCAC 58.407 34.615 20.33 0.00 0.00 5.01
2008 14484 6.742718 GCATGCTATATTAATTAGTTGCCACG 59.257 38.462 11.37 0.00 0.00 4.94
2009 14485 7.360861 GCATGCTATATTAATTAGTTGCCACGA 60.361 37.037 11.37 0.00 0.00 4.35
2010 14486 8.668353 CATGCTATATTAATTAGTTGCCACGAT 58.332 33.333 0.00 0.00 0.00 3.73
2011 14487 9.884636 ATGCTATATTAATTAGTTGCCACGATA 57.115 29.630 0.00 0.00 0.00 2.92
2012 14488 9.884636 TGCTATATTAATTAGTTGCCACGATAT 57.115 29.630 0.00 0.00 0.00 1.63
2017 14493 8.911918 ATTAATTAGTTGCCACGATATAACCA 57.088 30.769 0.00 0.00 0.00 3.67
2018 14494 6.613755 AATTAGTTGCCACGATATAACCAC 57.386 37.500 0.00 0.00 0.00 4.16
2019 14495 3.906720 AGTTGCCACGATATAACCACT 57.093 42.857 0.00 0.00 0.00 4.00
2020 14496 4.216411 AGTTGCCACGATATAACCACTT 57.784 40.909 0.00 0.00 0.00 3.16
2021 14497 3.938963 AGTTGCCACGATATAACCACTTG 59.061 43.478 0.00 0.00 0.00 3.16
2022 14498 3.897141 TGCCACGATATAACCACTTGA 57.103 42.857 0.00 0.00 0.00 3.02
2023 14499 4.415881 TGCCACGATATAACCACTTGAT 57.584 40.909 0.00 0.00 0.00 2.57
2024 14500 5.538849 TGCCACGATATAACCACTTGATA 57.461 39.130 0.00 0.00 0.00 2.15
2025 14501 6.109156 TGCCACGATATAACCACTTGATAT 57.891 37.500 0.00 0.00 0.00 1.63
2026 14502 6.530120 TGCCACGATATAACCACTTGATATT 58.470 36.000 0.00 0.00 0.00 1.28
2027 14503 6.995686 TGCCACGATATAACCACTTGATATTT 59.004 34.615 0.00 0.00 0.00 1.40
2028 14504 7.041440 TGCCACGATATAACCACTTGATATTTG 60.041 37.037 0.00 0.00 0.00 2.32
2029 14505 7.298122 CCACGATATAACCACTTGATATTTGC 58.702 38.462 0.00 0.00 0.00 3.68
2030 14506 7.041440 CCACGATATAACCACTTGATATTTGCA 60.041 37.037 0.00 0.00 0.00 4.08
2031 14507 8.341903 CACGATATAACCACTTGATATTTGCAA 58.658 33.333 0.00 0.00 0.00 4.08
2032 14508 8.898761 ACGATATAACCACTTGATATTTGCAAA 58.101 29.630 15.44 15.44 0.00 3.68
2033 14509 9.729023 CGATATAACCACTTGATATTTGCAAAA 57.271 29.630 17.19 6.25 0.00 2.44
2036 14512 4.568956 ACCACTTGATATTTGCAAAAGGC 58.431 39.130 17.19 8.61 45.13 4.35
2070 14546 4.541973 TTTTTAACGGTAGAGGGGAGAC 57.458 45.455 0.00 0.00 0.00 3.36
2082 14558 3.324713 GGAGACCATCCCCACCTG 58.675 66.667 0.00 0.00 43.01 4.00
2083 14559 1.306997 GGAGACCATCCCCACCTGA 60.307 63.158 0.00 0.00 43.01 3.86
2084 14560 0.914417 GGAGACCATCCCCACCTGAA 60.914 60.000 0.00 0.00 43.01 3.02
2085 14561 1.216990 GAGACCATCCCCACCTGAAT 58.783 55.000 0.00 0.00 0.00 2.57
2086 14562 2.408565 GAGACCATCCCCACCTGAATA 58.591 52.381 0.00 0.00 0.00 1.75
2087 14563 2.982488 GAGACCATCCCCACCTGAATAT 59.018 50.000 0.00 0.00 0.00 1.28
2088 14564 4.168101 GAGACCATCCCCACCTGAATATA 58.832 47.826 0.00 0.00 0.00 0.86
2089 14565 3.910627 AGACCATCCCCACCTGAATATAC 59.089 47.826 0.00 0.00 0.00 1.47
2090 14566 3.910627 GACCATCCCCACCTGAATATACT 59.089 47.826 0.00 0.00 0.00 2.12
2091 14567 5.091552 GACCATCCCCACCTGAATATACTA 58.908 45.833 0.00 0.00 0.00 1.82
2092 14568 5.094387 ACCATCCCCACCTGAATATACTAG 58.906 45.833 0.00 0.00 0.00 2.57
2093 14569 5.094387 CCATCCCCACCTGAATATACTAGT 58.906 45.833 0.00 0.00 0.00 2.57
2094 14570 6.183361 ACCATCCCCACCTGAATATACTAGTA 60.183 42.308 4.77 4.77 0.00 1.82
2095 14571 6.903534 CCATCCCCACCTGAATATACTAGTAT 59.096 42.308 19.07 19.07 0.00 2.12
2096 14572 7.403231 CCATCCCCACCTGAATATACTAGTATT 59.597 40.741 20.21 5.64 0.00 1.89
2097 14573 8.826765 CATCCCCACCTGAATATACTAGTATTT 58.173 37.037 20.21 10.18 0.00 1.40
2098 14574 8.431910 TCCCCACCTGAATATACTAGTATTTC 57.568 38.462 20.21 20.03 0.00 2.17
2099 14575 7.177921 TCCCCACCTGAATATACTAGTATTTCG 59.822 40.741 20.21 16.05 0.00 3.46
2100 14576 7.177921 CCCCACCTGAATATACTAGTATTTCGA 59.822 40.741 20.21 3.18 0.00 3.71
2101 14577 8.750298 CCCACCTGAATATACTAGTATTTCGAT 58.250 37.037 20.21 5.47 0.00 3.59
2104 14580 9.640963 ACCTGAATATACTAGTATTTCGATTGC 57.359 33.333 20.21 8.77 0.00 3.56
2105 14581 9.639601 CCTGAATATACTAGTATTTCGATTGCA 57.360 33.333 20.21 11.88 0.00 4.08
2111 14587 8.942338 ATACTAGTATTTCGATTGCAACAAGA 57.058 30.769 9.71 0.00 0.00 3.02
2112 14588 7.667043 ACTAGTATTTCGATTGCAACAAGAA 57.333 32.000 0.00 5.08 0.00 2.52
2113 14589 7.743104 ACTAGTATTTCGATTGCAACAAGAAG 58.257 34.615 0.00 0.00 0.00 2.85
2114 14590 6.801539 AGTATTTCGATTGCAACAAGAAGA 57.198 33.333 0.00 0.44 0.00 2.87
2115 14591 7.202016 AGTATTTCGATTGCAACAAGAAGAA 57.798 32.000 0.00 0.00 0.00 2.52
2116 14592 7.078228 AGTATTTCGATTGCAACAAGAAGAAC 58.922 34.615 0.00 9.45 0.00 3.01
2117 14593 5.499139 TTTCGATTGCAACAAGAAGAACT 57.501 34.783 0.00 0.00 0.00 3.01
2118 14594 4.732285 TCGATTGCAACAAGAAGAACTC 57.268 40.909 0.00 0.00 0.00 3.01
2119 14595 4.126437 TCGATTGCAACAAGAAGAACTCA 58.874 39.130 0.00 0.00 0.00 3.41
2120 14596 4.574421 TCGATTGCAACAAGAAGAACTCAA 59.426 37.500 0.00 0.00 0.00 3.02
2121 14597 4.908156 CGATTGCAACAAGAAGAACTCAAG 59.092 41.667 0.00 0.00 0.00 3.02
2122 14598 4.637483 TTGCAACAAGAAGAACTCAAGG 57.363 40.909 0.00 0.00 0.00 3.61
2123 14599 2.358898 TGCAACAAGAAGAACTCAAGGC 59.641 45.455 0.00 0.00 0.00 4.35
2124 14600 2.358898 GCAACAAGAAGAACTCAAGGCA 59.641 45.455 0.00 0.00 0.00 4.75
2125 14601 3.549625 GCAACAAGAAGAACTCAAGGCAG 60.550 47.826 0.00 0.00 0.00 4.85
2126 14602 3.845781 ACAAGAAGAACTCAAGGCAGA 57.154 42.857 0.00 0.00 0.00 4.26
2127 14603 4.156455 ACAAGAAGAACTCAAGGCAGAA 57.844 40.909 0.00 0.00 0.00 3.02
2128 14604 4.723309 ACAAGAAGAACTCAAGGCAGAAT 58.277 39.130 0.00 0.00 0.00 2.40
2129 14605 5.136105 ACAAGAAGAACTCAAGGCAGAATT 58.864 37.500 0.00 0.00 0.00 2.17
2130 14606 5.240403 ACAAGAAGAACTCAAGGCAGAATTC 59.760 40.000 0.00 0.00 0.00 2.17
2131 14607 4.978099 AGAAGAACTCAAGGCAGAATTCA 58.022 39.130 8.44 0.00 0.00 2.57
2132 14608 5.380043 AGAAGAACTCAAGGCAGAATTCAA 58.620 37.500 8.44 0.00 0.00 2.69
2133 14609 5.472820 AGAAGAACTCAAGGCAGAATTCAAG 59.527 40.000 8.44 0.69 0.00 3.02
2134 14610 4.077822 AGAACTCAAGGCAGAATTCAAGG 58.922 43.478 8.44 0.00 0.00 3.61
2135 14611 3.795688 ACTCAAGGCAGAATTCAAGGA 57.204 42.857 8.44 0.00 0.00 3.36
2136 14612 4.313020 ACTCAAGGCAGAATTCAAGGAT 57.687 40.909 8.44 0.00 0.00 3.24
2137 14613 5.441718 ACTCAAGGCAGAATTCAAGGATA 57.558 39.130 8.44 0.00 0.00 2.59
2138 14614 6.011122 ACTCAAGGCAGAATTCAAGGATAT 57.989 37.500 8.44 0.00 0.00 1.63
2139 14615 7.141758 ACTCAAGGCAGAATTCAAGGATATA 57.858 36.000 8.44 0.00 0.00 0.86
2140 14616 7.753630 ACTCAAGGCAGAATTCAAGGATATAT 58.246 34.615 8.44 0.00 0.00 0.86
2141 14617 8.884323 ACTCAAGGCAGAATTCAAGGATATATA 58.116 33.333 8.44 0.00 0.00 0.86
2142 14618 9.902684 CTCAAGGCAGAATTCAAGGATATATAT 57.097 33.333 8.44 0.00 0.00 0.86
2166 14642 8.766994 ATTATCCAAAATGGCATGTAGTAAGT 57.233 30.769 0.00 0.00 37.47 2.24
2167 14643 8.588290 TTATCCAAAATGGCATGTAGTAAGTT 57.412 30.769 0.00 0.00 37.47 2.66
2168 14644 6.909550 TCCAAAATGGCATGTAGTAAGTTT 57.090 33.333 0.00 0.00 37.47 2.66
2169 14645 8.588290 ATCCAAAATGGCATGTAGTAAGTTTA 57.412 30.769 0.00 0.00 37.47 2.01
2170 14646 8.050778 TCCAAAATGGCATGTAGTAAGTTTAG 57.949 34.615 0.00 0.00 37.47 1.85
2171 14647 6.751888 CCAAAATGGCATGTAGTAAGTTTAGC 59.248 38.462 0.00 0.00 0.00 3.09
2172 14648 5.734855 AATGGCATGTAGTAAGTTTAGCG 57.265 39.130 0.00 0.00 0.00 4.26
2173 14649 2.933906 TGGCATGTAGTAAGTTTAGCGC 59.066 45.455 0.00 0.00 0.00 5.92
2174 14650 2.933906 GGCATGTAGTAAGTTTAGCGCA 59.066 45.455 11.47 0.00 0.00 6.09
2175 14651 3.560068 GGCATGTAGTAAGTTTAGCGCAT 59.440 43.478 11.47 0.00 0.00 4.73
2176 14652 4.318831 GGCATGTAGTAAGTTTAGCGCATC 60.319 45.833 11.47 0.00 0.00 3.91
2177 14653 4.508124 GCATGTAGTAAGTTTAGCGCATCT 59.492 41.667 11.47 0.00 0.00 2.90
2178 14654 5.690409 GCATGTAGTAAGTTTAGCGCATCTA 59.310 40.000 11.47 0.00 0.00 1.98
2179 14655 6.366332 GCATGTAGTAAGTTTAGCGCATCTAT 59.634 38.462 11.47 0.00 0.00 1.98
2180 14656 7.410942 GCATGTAGTAAGTTTAGCGCATCTATC 60.411 40.741 11.47 0.00 0.00 2.08
2181 14657 7.273320 TGTAGTAAGTTTAGCGCATCTATCT 57.727 36.000 11.47 6.69 0.00 1.98
2182 14658 8.387190 TGTAGTAAGTTTAGCGCATCTATCTA 57.613 34.615 11.47 5.84 0.00 1.98
2183 14659 8.843262 TGTAGTAAGTTTAGCGCATCTATCTAA 58.157 33.333 11.47 0.00 0.00 2.10
2184 14660 9.332301 GTAGTAAGTTTAGCGCATCTATCTAAG 57.668 37.037 11.47 0.00 0.00 2.18
2185 14661 7.942990 AGTAAGTTTAGCGCATCTATCTAAGT 58.057 34.615 11.47 0.00 0.00 2.24
2186 14662 9.064706 AGTAAGTTTAGCGCATCTATCTAAGTA 57.935 33.333 11.47 0.00 0.00 2.24
2187 14663 9.116054 GTAAGTTTAGCGCATCTATCTAAGTAC 57.884 37.037 11.47 0.00 0.00 2.73
2188 14664 7.273320 AGTTTAGCGCATCTATCTAAGTACA 57.727 36.000 11.47 0.00 0.00 2.90
2189 14665 7.887381 AGTTTAGCGCATCTATCTAAGTACAT 58.113 34.615 11.47 0.00 0.00 2.29
2190 14666 8.024285 AGTTTAGCGCATCTATCTAAGTACATC 58.976 37.037 11.47 0.00 0.00 3.06
2191 14667 7.689446 TTAGCGCATCTATCTAAGTACATCT 57.311 36.000 11.47 0.00 0.00 2.90
2192 14668 6.582677 AGCGCATCTATCTAAGTACATCTT 57.417 37.500 11.47 0.00 39.89 2.40
2193 14669 6.987386 AGCGCATCTATCTAAGTACATCTTT 58.013 36.000 11.47 0.00 37.56 2.52
2194 14670 7.437748 AGCGCATCTATCTAAGTACATCTTTT 58.562 34.615 11.47 0.00 37.56 2.27
2195 14671 8.577296 AGCGCATCTATCTAAGTACATCTTTTA 58.423 33.333 11.47 0.00 37.56 1.52
2196 14672 8.855279 GCGCATCTATCTAAGTACATCTTTTAG 58.145 37.037 0.30 0.00 37.56 1.85
2220 14696 3.119096 GGCGTTTCTGCTCCCGAC 61.119 66.667 0.00 0.00 34.52 4.79
2221 14697 2.048127 GCGTTTCTGCTCCCGACT 60.048 61.111 0.00 0.00 0.00 4.18
2222 14698 2.095252 GCGTTTCTGCTCCCGACTC 61.095 63.158 0.00 0.00 0.00 3.36
2223 14699 1.289066 CGTTTCTGCTCCCGACTCA 59.711 57.895 0.00 0.00 0.00 3.41
2224 14700 0.108615 CGTTTCTGCTCCCGACTCAT 60.109 55.000 0.00 0.00 0.00 2.90
2225 14701 1.646189 GTTTCTGCTCCCGACTCATC 58.354 55.000 0.00 0.00 0.00 2.92
2226 14702 1.066858 GTTTCTGCTCCCGACTCATCA 60.067 52.381 0.00 0.00 0.00 3.07
2227 14703 0.820226 TTCTGCTCCCGACTCATCAG 59.180 55.000 0.00 0.00 0.00 2.90
2228 14704 1.227205 CTGCTCCCGACTCATCAGC 60.227 63.158 0.00 0.00 0.00 4.26
2229 14705 1.953231 CTGCTCCCGACTCATCAGCA 61.953 60.000 0.00 0.00 37.76 4.41
2230 14706 1.520342 GCTCCCGACTCATCAGCAC 60.520 63.158 0.00 0.00 0.00 4.40
2233 14709 2.187946 CCGACTCATCAGCACCCC 59.812 66.667 0.00 0.00 0.00 4.95
2322 14803 2.526304 TTATGTATGAGGTGCGCTCC 57.474 50.000 20.71 20.71 0.00 4.70
2329 14810 1.327303 TGAGGTGCGCTCCAAATTTT 58.673 45.000 28.68 8.32 0.00 1.82
2357 14838 3.777106 TTGGACATCTGAGCAACTCTT 57.223 42.857 0.00 0.00 0.00 2.85
2359 14840 4.890158 TGGACATCTGAGCAACTCTTAA 57.110 40.909 0.00 0.00 0.00 1.85
2362 14843 4.997395 GGACATCTGAGCAACTCTTAACAA 59.003 41.667 0.00 0.00 0.00 2.83
2465 14946 4.260170 AGCTGCTCAGAAGTCCAAATAAG 58.740 43.478 0.00 0.00 0.00 1.73
2577 18817 2.045561 TTTTTCTGACCGGTTGCAGA 57.954 45.000 19.26 19.26 39.24 4.26
2578 18818 2.270352 TTTTCTGACCGGTTGCAGAT 57.730 45.000 22.61 0.00 40.51 2.90
2579 18819 1.522668 TTTCTGACCGGTTGCAGATG 58.477 50.000 22.61 1.46 40.51 2.90
2580 18820 0.684535 TTCTGACCGGTTGCAGATGA 59.315 50.000 22.61 9.56 40.51 2.92
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
62 63 2.359531 CCTCCTCGATACTCTGGTTGTC 59.640 54.545 0.00 0.00 0.00 3.18
169 185 2.310349 TCAAGGAGACTAGAGCCTCTGT 59.690 50.000 3.98 0.28 42.68 3.41
261 277 0.682852 CCTCACCTACACCGTGGAAA 59.317 55.000 3.03 0.00 0.00 3.13
270 286 0.335361 GGACCTCCTCCTCACCTACA 59.665 60.000 0.00 0.00 35.89 2.74
301 317 2.612115 CAGGGGTGCCTCCTCCTT 60.612 66.667 0.00 0.00 37.41 3.36
312 329 2.367202 CGGTAGGTGATGCAGGGGT 61.367 63.158 0.00 0.00 0.00 4.95
465 482 2.025589 TTTGGTGTGTGCGACTGTAA 57.974 45.000 0.00 0.00 0.00 2.41
488 505 0.620556 ACTCGGATGTTTGATGGCCT 59.379 50.000 3.32 0.00 0.00 5.19
531 548 2.027745 ACAACAAATGTGCCACCAACAA 60.028 40.909 0.00 0.00 41.93 2.83
546 563 2.780065 AGCGTACGTGTAGACAACAA 57.220 45.000 17.90 0.00 40.63 2.83
560 577 2.034432 TCGTTTCACAACCACTAGCGTA 59.966 45.455 0.00 0.00 0.00 4.42
561 578 1.202440 TCGTTTCACAACCACTAGCGT 60.202 47.619 0.00 0.00 0.00 5.07
562 579 1.455786 CTCGTTTCACAACCACTAGCG 59.544 52.381 0.00 0.00 0.00 4.26
563 580 2.480845 ACTCGTTTCACAACCACTAGC 58.519 47.619 0.00 0.00 0.00 3.42
577 594 8.847196 AGATATGTATACACACATGTACTCGTT 58.153 33.333 7.96 0.00 44.11 3.85
638 655 2.903798 CCCAAAGCAAAAAGAAGCACA 58.096 42.857 0.00 0.00 0.00 4.57
692 709 2.675889 CGTCTTAATTAGTGGCCACCGT 60.676 50.000 32.29 17.64 0.00 4.83
742 759 2.971660 TGTGTTTCACGAGGACAAGA 57.028 45.000 0.00 0.00 37.14 3.02
764 790 1.138883 GCCGTAGTGCTGATCGTGA 59.861 57.895 0.00 0.00 0.00 4.35
768 794 1.405821 ACTAGTGCCGTAGTGCTGATC 59.594 52.381 0.00 0.00 31.75 2.92
770 796 1.741706 GTACTAGTGCCGTAGTGCTGA 59.258 52.381 5.39 0.00 34.91 4.26
978 1006 5.009510 TGTGCATATAAAAACGCATAGCCAT 59.990 36.000 0.00 0.00 36.64 4.40
1145 9307 3.589654 CTTCTTGGCCCAGCGACGA 62.590 63.158 0.00 0.00 0.00 4.20
1249 9447 4.379174 CAGTACCGGCTGCACTTT 57.621 55.556 0.00 0.00 0.00 2.66
1419 9621 1.503818 CGTGCACTGCTTACCGGTTT 61.504 55.000 15.04 0.00 0.00 3.27
1516 9719 5.967088 AGATGGTATTGATACATACCGAGC 58.033 41.667 5.60 0.00 44.32 5.03
1519 9722 7.406031 AGGTAGATGGTATTGATACATACCG 57.594 40.000 5.60 0.00 44.32 4.02
1597 9807 8.983307 AAAGGTACAACGTTTTTATTTGACAA 57.017 26.923 0.00 0.00 32.96 3.18
1611 9821 6.856135 AAGGAGTAAAGAAAAGGTACAACG 57.144 37.500 0.00 0.00 0.00 4.10
1669 14141 9.283768 GGTTTCAATTCCAAATGAAAATTACCT 57.716 29.630 4.47 0.00 44.52 3.08
1685 14157 3.502211 ACATGACAGACGGGTTTCAATTC 59.498 43.478 0.00 0.00 0.00 2.17
1690 14162 1.878953 ACACATGACAGACGGGTTTC 58.121 50.000 0.00 0.00 0.00 2.78
1691 14163 2.341846 AACACATGACAGACGGGTTT 57.658 45.000 0.00 0.00 0.00 3.27
1695 14167 3.125146 CACCAATAACACATGACAGACGG 59.875 47.826 0.00 0.00 0.00 4.79
1754 14228 9.886132 ATCTACGTACAGGTCTTAAATCAAATT 57.114 29.630 0.00 0.00 0.00 1.82
1757 14231 9.182214 ACTATCTACGTACAGGTCTTAAATCAA 57.818 33.333 0.00 0.00 0.00 2.57
1763 14239 5.750547 CACGACTATCTACGTACAGGTCTTA 59.249 44.000 0.00 0.00 40.76 2.10
1772 14248 2.938451 CACCACCACGACTATCTACGTA 59.062 50.000 0.00 0.00 40.76 3.57
1775 14251 1.749634 AGCACCACCACGACTATCTAC 59.250 52.381 0.00 0.00 0.00 2.59
1781 14257 3.550431 AGCAGCACCACCACGACT 61.550 61.111 0.00 0.00 0.00 4.18
1784 14260 3.881952 TAGCAGCAGCACCACCACG 62.882 63.158 3.17 0.00 45.49 4.94
1793 14269 1.642952 GCAACAGTCCTAGCAGCAGC 61.643 60.000 0.00 0.00 42.56 5.25
1808 14284 4.159879 AGTGATAGTGGTAGTAGTGGCAAC 59.840 45.833 0.00 0.00 0.00 4.17
1809 14285 4.159693 CAGTGATAGTGGTAGTAGTGGCAA 59.840 45.833 0.00 0.00 0.00 4.52
1820 14296 3.173965 AGTAAGTGGCAGTGATAGTGGT 58.826 45.455 0.00 0.00 0.00 4.16
1824 14300 5.299531 TGCTAGTAGTAAGTGGCAGTGATAG 59.700 44.000 0.00 0.00 37.59 2.08
1826 14302 4.023980 TGCTAGTAGTAAGTGGCAGTGAT 58.976 43.478 0.00 0.00 37.59 3.06
1828 14304 3.193691 AGTGCTAGTAGTAAGTGGCAGTG 59.806 47.826 0.00 0.00 42.66 3.66
1829 14305 3.432378 AGTGCTAGTAGTAAGTGGCAGT 58.568 45.455 0.00 0.00 42.49 4.40
1850 14326 1.405105 GTGGCGGTAGTCGTAATGGTA 59.595 52.381 0.00 0.00 41.72 3.25
1859 14335 2.047560 GTGGTGGTGGCGGTAGTC 60.048 66.667 0.00 0.00 0.00 2.59
1860 14336 3.633116 GGTGGTGGTGGCGGTAGT 61.633 66.667 0.00 0.00 0.00 2.73
1861 14337 3.632080 TGGTGGTGGTGGCGGTAG 61.632 66.667 0.00 0.00 0.00 3.18
1862 14338 3.943691 GTGGTGGTGGTGGCGGTA 61.944 66.667 0.00 0.00 0.00 4.02
1866 14342 2.824880 TAGTGGTGGTGGTGGTGGC 61.825 63.158 0.00 0.00 0.00 5.01
1867 14343 1.072505 GTAGTGGTGGTGGTGGTGG 59.927 63.158 0.00 0.00 0.00 4.61
1868 14344 1.001633 GTAGTAGTGGTGGTGGTGGTG 59.998 57.143 0.00 0.00 0.00 4.17
1869 14345 1.132945 AGTAGTAGTGGTGGTGGTGGT 60.133 52.381 0.00 0.00 0.00 4.16
1870 14346 1.275291 CAGTAGTAGTGGTGGTGGTGG 59.725 57.143 0.00 0.00 0.00 4.61
1871 14347 1.337823 GCAGTAGTAGTGGTGGTGGTG 60.338 57.143 7.11 0.00 0.00 4.17
1872 14348 0.974383 GCAGTAGTAGTGGTGGTGGT 59.026 55.000 7.11 0.00 0.00 4.16
1873 14349 0.249398 GGCAGTAGTAGTGGTGGTGG 59.751 60.000 7.11 0.00 0.00 4.61
1874 14350 1.267121 AGGCAGTAGTAGTGGTGGTG 58.733 55.000 7.11 0.00 0.00 4.17
1875 14351 2.913603 TAGGCAGTAGTAGTGGTGGT 57.086 50.000 7.11 0.00 0.00 4.16
1876 14352 4.755266 ATTTAGGCAGTAGTAGTGGTGG 57.245 45.455 7.11 0.00 0.00 4.61
1877 14353 6.128007 CCAAAATTTAGGCAGTAGTAGTGGTG 60.128 42.308 7.11 0.00 0.00 4.17
1878 14354 5.944007 CCAAAATTTAGGCAGTAGTAGTGGT 59.056 40.000 7.11 0.00 0.00 4.16
1879 14355 5.944007 ACCAAAATTTAGGCAGTAGTAGTGG 59.056 40.000 7.11 0.00 0.00 4.00
1880 14356 7.448748 AACCAAAATTTAGGCAGTAGTAGTG 57.551 36.000 0.17 0.17 0.00 2.74
1881 14357 9.577222 TTTAACCAAAATTTAGGCAGTAGTAGT 57.423 29.630 0.00 0.00 0.00 2.73
1884 14360 8.311109 CCATTTAACCAAAATTTAGGCAGTAGT 58.689 33.333 0.00 0.00 35.54 2.73
1885 14361 8.527810 TCCATTTAACCAAAATTTAGGCAGTAG 58.472 33.333 0.00 0.00 35.54 2.57
1886 14362 8.423906 TCCATTTAACCAAAATTTAGGCAGTA 57.576 30.769 0.00 0.00 35.54 2.74
1887 14363 7.309770 TCCATTTAACCAAAATTTAGGCAGT 57.690 32.000 0.00 0.00 35.54 4.40
1888 14364 8.040132 TGATCCATTTAACCAAAATTTAGGCAG 58.960 33.333 0.00 0.00 35.54 4.85
1889 14365 7.911651 TGATCCATTTAACCAAAATTTAGGCA 58.088 30.769 0.00 0.00 35.54 4.75
1890 14366 8.962884 ATGATCCATTTAACCAAAATTTAGGC 57.037 30.769 0.00 0.00 35.54 3.93
1901 14377 9.750125 GGTTAATCTTGAATGATCCATTTAACC 57.250 33.333 10.44 10.44 35.02 2.85
1914 14390 9.739276 TGTTGTCATTCTAGGTTAATCTTGAAT 57.261 29.630 16.63 16.63 38.87 2.57
1915 14391 8.999431 GTGTTGTCATTCTAGGTTAATCTTGAA 58.001 33.333 13.78 13.78 34.24 2.69
1916 14392 8.154203 TGTGTTGTCATTCTAGGTTAATCTTGA 58.846 33.333 0.00 0.00 0.00 3.02
1917 14393 8.322906 TGTGTTGTCATTCTAGGTTAATCTTG 57.677 34.615 0.00 0.00 0.00 3.02
1918 14394 8.918202 TTGTGTTGTCATTCTAGGTTAATCTT 57.082 30.769 0.00 0.00 0.00 2.40
1919 14395 9.520515 AATTGTGTTGTCATTCTAGGTTAATCT 57.479 29.630 0.00 0.00 0.00 2.40
1920 14396 9.774742 GAATTGTGTTGTCATTCTAGGTTAATC 57.225 33.333 0.00 0.00 0.00 1.75
1921 14397 8.450964 CGAATTGTGTTGTCATTCTAGGTTAAT 58.549 33.333 0.00 0.00 0.00 1.40
1922 14398 7.094975 CCGAATTGTGTTGTCATTCTAGGTTAA 60.095 37.037 0.00 0.00 0.00 2.01
1923 14399 6.370442 CCGAATTGTGTTGTCATTCTAGGTTA 59.630 38.462 0.00 0.00 0.00 2.85
1924 14400 5.181245 CCGAATTGTGTTGTCATTCTAGGTT 59.819 40.000 0.00 0.00 0.00 3.50
1925 14401 4.695455 CCGAATTGTGTTGTCATTCTAGGT 59.305 41.667 0.00 0.00 0.00 3.08
1926 14402 4.437390 GCCGAATTGTGTTGTCATTCTAGG 60.437 45.833 0.00 0.00 0.00 3.02
1927 14403 4.154015 TGCCGAATTGTGTTGTCATTCTAG 59.846 41.667 0.00 0.00 0.00 2.43
1928 14404 4.068599 TGCCGAATTGTGTTGTCATTCTA 58.931 39.130 0.00 0.00 0.00 2.10
1929 14405 2.884012 TGCCGAATTGTGTTGTCATTCT 59.116 40.909 0.00 0.00 0.00 2.40
1930 14406 3.236816 CTGCCGAATTGTGTTGTCATTC 58.763 45.455 0.00 0.00 0.00 2.67
1931 14407 2.622942 ACTGCCGAATTGTGTTGTCATT 59.377 40.909 0.00 0.00 0.00 2.57
1932 14408 2.226437 GACTGCCGAATTGTGTTGTCAT 59.774 45.455 0.00 0.00 0.00 3.06
1933 14409 1.601903 GACTGCCGAATTGTGTTGTCA 59.398 47.619 0.00 0.00 0.00 3.58
1934 14410 1.873591 AGACTGCCGAATTGTGTTGTC 59.126 47.619 0.00 0.00 0.00 3.18
1935 14411 1.967319 AGACTGCCGAATTGTGTTGT 58.033 45.000 0.00 0.00 0.00 3.32
1936 14412 4.481930 TTTAGACTGCCGAATTGTGTTG 57.518 40.909 0.00 0.00 0.00 3.33
1937 14413 4.518970 ACATTTAGACTGCCGAATTGTGTT 59.481 37.500 0.00 0.00 0.00 3.32
1938 14414 4.072131 ACATTTAGACTGCCGAATTGTGT 58.928 39.130 0.00 0.00 0.00 3.72
1939 14415 4.685169 ACATTTAGACTGCCGAATTGTG 57.315 40.909 0.00 0.00 0.00 3.33
1940 14416 6.112734 TCATACATTTAGACTGCCGAATTGT 58.887 36.000 0.00 0.00 31.93 2.71
1941 14417 6.603237 TCATACATTTAGACTGCCGAATTG 57.397 37.500 0.00 0.00 0.00 2.32
1942 14418 7.498900 TCAATCATACATTTAGACTGCCGAATT 59.501 33.333 0.00 0.00 0.00 2.17
1943 14419 6.992123 TCAATCATACATTTAGACTGCCGAAT 59.008 34.615 0.00 0.00 0.00 3.34
1944 14420 6.345298 TCAATCATACATTTAGACTGCCGAA 58.655 36.000 0.00 0.00 0.00 4.30
1945 14421 5.912892 TCAATCATACATTTAGACTGCCGA 58.087 37.500 0.00 0.00 0.00 5.54
1946 14422 6.603237 TTCAATCATACATTTAGACTGCCG 57.397 37.500 0.00 0.00 0.00 5.69
1947 14423 7.283127 TCCTTTCAATCATACATTTAGACTGCC 59.717 37.037 0.00 0.00 0.00 4.85
1948 14424 8.213518 TCCTTTCAATCATACATTTAGACTGC 57.786 34.615 0.00 0.00 0.00 4.40
1949 14425 8.341173 GCTCCTTTCAATCATACATTTAGACTG 58.659 37.037 0.00 0.00 0.00 3.51
1950 14426 8.270744 AGCTCCTTTCAATCATACATTTAGACT 58.729 33.333 0.00 0.00 0.00 3.24
1951 14427 8.443953 AGCTCCTTTCAATCATACATTTAGAC 57.556 34.615 0.00 0.00 0.00 2.59
1958 14434 7.975616 GCAAATTAAGCTCCTTTCAATCATACA 59.024 33.333 0.00 0.00 0.00 2.29
1959 14435 7.975616 TGCAAATTAAGCTCCTTTCAATCATAC 59.024 33.333 4.67 0.00 0.00 2.39
1960 14436 8.065473 TGCAAATTAAGCTCCTTTCAATCATA 57.935 30.769 4.67 0.00 0.00 2.15
1961 14437 6.938507 TGCAAATTAAGCTCCTTTCAATCAT 58.061 32.000 4.67 0.00 0.00 2.45
1962 14438 6.343716 TGCAAATTAAGCTCCTTTCAATCA 57.656 33.333 4.67 0.00 0.00 2.57
1963 14439 6.238022 GCATGCAAATTAAGCTCCTTTCAATC 60.238 38.462 14.21 0.00 0.00 2.67
1964 14440 5.583457 GCATGCAAATTAAGCTCCTTTCAAT 59.417 36.000 14.21 0.00 0.00 2.57
1965 14441 4.931002 GCATGCAAATTAAGCTCCTTTCAA 59.069 37.500 14.21 0.00 0.00 2.69
1966 14442 4.221262 AGCATGCAAATTAAGCTCCTTTCA 59.779 37.500 21.98 0.00 0.00 2.69
1967 14443 4.752146 AGCATGCAAATTAAGCTCCTTTC 58.248 39.130 21.98 0.00 0.00 2.62
1968 14444 4.813750 AGCATGCAAATTAAGCTCCTTT 57.186 36.364 21.98 0.00 0.00 3.11
1969 14445 7.771927 ATATAGCATGCAAATTAAGCTCCTT 57.228 32.000 21.98 0.00 36.80 3.36
1970 14446 7.771927 AATATAGCATGCAAATTAAGCTCCT 57.228 32.000 21.98 0.00 36.80 3.69
1979 14455 9.643693 GGCAACTAATTAATATAGCATGCAAAT 57.356 29.630 21.98 15.14 37.84 2.32
1980 14456 8.637099 TGGCAACTAATTAATATAGCATGCAAA 58.363 29.630 21.98 7.96 37.84 3.68
1981 14457 8.081633 GTGGCAACTAATTAATATAGCATGCAA 58.918 33.333 21.98 4.19 37.84 4.08
1982 14458 7.572910 CGTGGCAACTAATTAATATAGCATGCA 60.573 37.037 21.98 6.36 37.84 3.96
1983 14459 6.742718 CGTGGCAACTAATTAATATAGCATGC 59.257 38.462 10.51 10.51 36.53 4.06
1984 14460 8.028540 TCGTGGCAACTAATTAATATAGCATG 57.971 34.615 0.00 0.00 37.61 4.06
1985 14461 8.792830 ATCGTGGCAACTAATTAATATAGCAT 57.207 30.769 0.00 0.00 37.61 3.79
1986 14462 9.884636 ATATCGTGGCAACTAATTAATATAGCA 57.115 29.630 0.00 0.00 37.61 3.49
1991 14467 9.999660 TGGTTATATCGTGGCAACTAATTAATA 57.000 29.630 0.00 0.00 37.61 0.98
1992 14468 8.780249 GTGGTTATATCGTGGCAACTAATTAAT 58.220 33.333 0.00 0.00 37.61 1.40
1993 14469 7.988599 AGTGGTTATATCGTGGCAACTAATTAA 59.011 33.333 0.00 0.00 37.61 1.40
1994 14470 7.502696 AGTGGTTATATCGTGGCAACTAATTA 58.497 34.615 0.00 0.00 37.61 1.40
1995 14471 6.354130 AGTGGTTATATCGTGGCAACTAATT 58.646 36.000 0.00 0.00 37.61 1.40
1996 14472 5.925509 AGTGGTTATATCGTGGCAACTAAT 58.074 37.500 0.00 0.00 37.61 1.73
1997 14473 5.347620 AGTGGTTATATCGTGGCAACTAA 57.652 39.130 0.00 0.00 37.61 2.24
1998 14474 5.105269 TCAAGTGGTTATATCGTGGCAACTA 60.105 40.000 0.00 0.00 37.61 2.24
1999 14475 3.906720 AGTGGTTATATCGTGGCAACT 57.093 42.857 0.00 0.00 37.61 3.16
2000 14476 3.936453 TCAAGTGGTTATATCGTGGCAAC 59.064 43.478 0.00 0.00 0.00 4.17
2001 14477 4.209307 TCAAGTGGTTATATCGTGGCAA 57.791 40.909 0.00 0.00 0.00 4.52
2002 14478 3.897141 TCAAGTGGTTATATCGTGGCA 57.103 42.857 0.00 0.00 0.00 4.92
2003 14479 7.298122 CAAATATCAAGTGGTTATATCGTGGC 58.702 38.462 0.00 0.00 0.00 5.01
2004 14480 7.041440 TGCAAATATCAAGTGGTTATATCGTGG 60.041 37.037 0.00 0.00 0.00 4.94
2005 14481 7.860613 TGCAAATATCAAGTGGTTATATCGTG 58.139 34.615 0.00 0.00 0.00 4.35
2006 14482 8.445275 TTGCAAATATCAAGTGGTTATATCGT 57.555 30.769 0.00 0.00 0.00 3.73
2007 14483 9.729023 TTTTGCAAATATCAAGTGGTTATATCG 57.271 29.630 13.65 0.00 0.00 2.92
2010 14486 7.978975 GCCTTTTGCAAATATCAAGTGGTTATA 59.021 33.333 13.65 0.00 40.77 0.98
2011 14487 6.818142 GCCTTTTGCAAATATCAAGTGGTTAT 59.182 34.615 13.65 0.00 40.77 1.89
2012 14488 6.162777 GCCTTTTGCAAATATCAAGTGGTTA 58.837 36.000 13.65 0.00 40.77 2.85
2013 14489 4.996758 GCCTTTTGCAAATATCAAGTGGTT 59.003 37.500 13.65 0.00 40.77 3.67
2014 14490 4.568956 GCCTTTTGCAAATATCAAGTGGT 58.431 39.130 13.65 0.00 40.77 4.16
2049 14525 3.261643 GGTCTCCCCTCTACCGTTAAAAA 59.738 47.826 0.00 0.00 0.00 1.94
2050 14526 2.833943 GGTCTCCCCTCTACCGTTAAAA 59.166 50.000 0.00 0.00 0.00 1.52
2051 14527 2.225343 TGGTCTCCCCTCTACCGTTAAA 60.225 50.000 0.00 0.00 35.98 1.52
2052 14528 1.358787 TGGTCTCCCCTCTACCGTTAA 59.641 52.381 0.00 0.00 35.98 2.01
2053 14529 1.002069 TGGTCTCCCCTCTACCGTTA 58.998 55.000 0.00 0.00 35.98 3.18
2054 14530 0.338814 ATGGTCTCCCCTCTACCGTT 59.661 55.000 0.00 0.00 35.98 4.44
2055 14531 0.106116 GATGGTCTCCCCTCTACCGT 60.106 60.000 0.00 0.00 35.98 4.83
2056 14532 0.828343 GGATGGTCTCCCCTCTACCG 60.828 65.000 0.00 0.00 38.19 4.02
2057 14533 3.151048 GGATGGTCTCCCCTCTACC 57.849 63.158 0.00 0.00 38.19 3.18
2065 14541 0.914417 TTCAGGTGGGGATGGTCTCC 60.914 60.000 0.00 0.00 44.11 3.71
2066 14542 1.216990 ATTCAGGTGGGGATGGTCTC 58.783 55.000 0.00 0.00 0.00 3.36
2067 14543 2.587060 TATTCAGGTGGGGATGGTCT 57.413 50.000 0.00 0.00 0.00 3.85
2068 14544 3.910627 AGTATATTCAGGTGGGGATGGTC 59.089 47.826 0.00 0.00 0.00 4.02
2069 14545 3.954662 AGTATATTCAGGTGGGGATGGT 58.045 45.455 0.00 0.00 0.00 3.55
2070 14546 5.094387 ACTAGTATATTCAGGTGGGGATGG 58.906 45.833 0.00 0.00 0.00 3.51
2071 14547 7.979786 ATACTAGTATATTCAGGTGGGGATG 57.020 40.000 13.88 0.00 0.00 3.51
2072 14548 8.990693 AAATACTAGTATATTCAGGTGGGGAT 57.009 34.615 15.74 0.00 0.00 3.85
2073 14549 7.177921 CGAAATACTAGTATATTCAGGTGGGGA 59.822 40.741 15.74 0.00 0.00 4.81
2074 14550 7.177921 TCGAAATACTAGTATATTCAGGTGGGG 59.822 40.741 15.74 7.60 0.00 4.96
2075 14551 8.118976 TCGAAATACTAGTATATTCAGGTGGG 57.881 38.462 15.74 8.12 0.00 4.61
2078 14554 9.640963 GCAATCGAAATACTAGTATATTCAGGT 57.359 33.333 15.74 10.69 0.00 4.00
2079 14555 9.639601 TGCAATCGAAATACTAGTATATTCAGG 57.360 33.333 15.74 9.71 0.00 3.86
2086 14562 8.942338 TCTTGTTGCAATCGAAATACTAGTAT 57.058 30.769 9.71 9.71 0.00 2.12
2087 14563 8.766000 TTCTTGTTGCAATCGAAATACTAGTA 57.234 30.769 0.59 4.77 0.00 1.82
2088 14564 7.602644 TCTTCTTGTTGCAATCGAAATACTAGT 59.397 33.333 0.59 0.00 0.00 2.57
2089 14565 7.963981 TCTTCTTGTTGCAATCGAAATACTAG 58.036 34.615 0.59 0.00 0.00 2.57
2090 14566 7.899178 TCTTCTTGTTGCAATCGAAATACTA 57.101 32.000 0.59 0.00 0.00 1.82
2091 14567 6.801539 TCTTCTTGTTGCAATCGAAATACT 57.198 33.333 0.59 0.00 0.00 2.12
2092 14568 7.078228 AGTTCTTCTTGTTGCAATCGAAATAC 58.922 34.615 0.59 6.83 0.00 1.89
2093 14569 7.041440 TGAGTTCTTCTTGTTGCAATCGAAATA 60.041 33.333 0.59 0.00 0.00 1.40
2094 14570 6.076981 AGTTCTTCTTGTTGCAATCGAAAT 57.923 33.333 0.59 0.00 0.00 2.17
2095 14571 5.065859 TGAGTTCTTCTTGTTGCAATCGAAA 59.934 36.000 0.59 0.00 0.00 3.46
2096 14572 4.574421 TGAGTTCTTCTTGTTGCAATCGAA 59.426 37.500 0.59 5.20 0.00 3.71
2097 14573 4.126437 TGAGTTCTTCTTGTTGCAATCGA 58.874 39.130 0.59 0.00 0.00 3.59
2098 14574 4.472691 TGAGTTCTTCTTGTTGCAATCG 57.527 40.909 0.59 0.00 0.00 3.34
2099 14575 5.218139 CCTTGAGTTCTTCTTGTTGCAATC 58.782 41.667 0.59 0.00 0.00 2.67
2100 14576 4.500375 GCCTTGAGTTCTTCTTGTTGCAAT 60.500 41.667 0.59 0.00 0.00 3.56
2101 14577 3.181487 GCCTTGAGTTCTTCTTGTTGCAA 60.181 43.478 0.00 0.00 0.00 4.08
2102 14578 2.358898 GCCTTGAGTTCTTCTTGTTGCA 59.641 45.455 0.00 0.00 0.00 4.08
2103 14579 2.358898 TGCCTTGAGTTCTTCTTGTTGC 59.641 45.455 0.00 0.00 0.00 4.17
2104 14580 3.879295 TCTGCCTTGAGTTCTTCTTGTTG 59.121 43.478 0.00 0.00 0.00 3.33
2105 14581 4.156455 TCTGCCTTGAGTTCTTCTTGTT 57.844 40.909 0.00 0.00 0.00 2.83
2106 14582 3.845781 TCTGCCTTGAGTTCTTCTTGT 57.154 42.857 0.00 0.00 0.00 3.16
2107 14583 5.240183 TGAATTCTGCCTTGAGTTCTTCTTG 59.760 40.000 7.05 0.00 34.91 3.02
2108 14584 5.380043 TGAATTCTGCCTTGAGTTCTTCTT 58.620 37.500 7.05 0.00 34.91 2.52
2109 14585 4.978099 TGAATTCTGCCTTGAGTTCTTCT 58.022 39.130 7.05 0.00 34.91 2.85
2110 14586 5.335504 CCTTGAATTCTGCCTTGAGTTCTTC 60.336 44.000 7.05 0.00 34.91 2.87
2111 14587 4.522022 CCTTGAATTCTGCCTTGAGTTCTT 59.478 41.667 7.05 0.00 34.91 2.52
2112 14588 4.077822 CCTTGAATTCTGCCTTGAGTTCT 58.922 43.478 7.05 0.00 34.91 3.01
2113 14589 4.074970 TCCTTGAATTCTGCCTTGAGTTC 58.925 43.478 7.05 0.00 34.58 3.01
2114 14590 4.104383 TCCTTGAATTCTGCCTTGAGTT 57.896 40.909 7.05 0.00 0.00 3.01
2115 14591 3.795688 TCCTTGAATTCTGCCTTGAGT 57.204 42.857 7.05 0.00 0.00 3.41
2116 14592 9.902684 ATATATATCCTTGAATTCTGCCTTGAG 57.097 33.333 7.05 0.00 0.00 3.02
2140 14616 9.860650 ACTTACTACATGCCATTTTGGATAATA 57.139 29.630 0.00 0.00 40.96 0.98
2141 14617 8.766994 ACTTACTACATGCCATTTTGGATAAT 57.233 30.769 0.00 0.00 40.96 1.28
2142 14618 8.588290 AACTTACTACATGCCATTTTGGATAA 57.412 30.769 0.00 0.00 40.96 1.75
2143 14619 8.588290 AAACTTACTACATGCCATTTTGGATA 57.412 30.769 0.00 0.00 40.96 2.59
2144 14620 7.480760 AAACTTACTACATGCCATTTTGGAT 57.519 32.000 0.00 0.00 40.96 3.41
2145 14621 6.909550 AAACTTACTACATGCCATTTTGGA 57.090 33.333 0.00 0.00 40.96 3.53
2146 14622 6.751888 GCTAAACTTACTACATGCCATTTTGG 59.248 38.462 0.00 0.00 41.55 3.28
2147 14623 6.468956 CGCTAAACTTACTACATGCCATTTTG 59.531 38.462 0.00 0.00 0.00 2.44
2148 14624 6.551736 CGCTAAACTTACTACATGCCATTTT 58.448 36.000 0.00 0.00 0.00 1.82
2149 14625 5.448632 GCGCTAAACTTACTACATGCCATTT 60.449 40.000 0.00 0.00 0.00 2.32
2150 14626 4.035208 GCGCTAAACTTACTACATGCCATT 59.965 41.667 0.00 0.00 0.00 3.16
2151 14627 3.560068 GCGCTAAACTTACTACATGCCAT 59.440 43.478 0.00 0.00 0.00 4.40
2152 14628 2.933906 GCGCTAAACTTACTACATGCCA 59.066 45.455 0.00 0.00 0.00 4.92
2153 14629 2.933906 TGCGCTAAACTTACTACATGCC 59.066 45.455 9.73 0.00 0.00 4.40
2154 14630 4.508124 AGATGCGCTAAACTTACTACATGC 59.492 41.667 9.73 0.00 0.00 4.06
2155 14631 7.810282 AGATAGATGCGCTAAACTTACTACATG 59.190 37.037 9.73 0.00 31.66 3.21
2156 14632 7.887381 AGATAGATGCGCTAAACTTACTACAT 58.113 34.615 9.73 0.00 31.66 2.29
2157 14633 7.273320 AGATAGATGCGCTAAACTTACTACA 57.727 36.000 9.73 0.00 31.66 2.74
2158 14634 9.332301 CTTAGATAGATGCGCTAAACTTACTAC 57.668 37.037 9.73 0.00 31.66 2.73
2159 14635 9.064706 ACTTAGATAGATGCGCTAAACTTACTA 57.935 33.333 9.73 7.07 31.66 1.82
2160 14636 7.942990 ACTTAGATAGATGCGCTAAACTTACT 58.057 34.615 9.73 7.89 31.66 2.24
2161 14637 9.116054 GTACTTAGATAGATGCGCTAAACTTAC 57.884 37.037 9.73 1.33 31.66 2.34
2162 14638 8.843262 TGTACTTAGATAGATGCGCTAAACTTA 58.157 33.333 9.73 0.00 31.66 2.24
2163 14639 7.713750 TGTACTTAGATAGATGCGCTAAACTT 58.286 34.615 9.73 0.00 31.66 2.66
2164 14640 7.273320 TGTACTTAGATAGATGCGCTAAACT 57.727 36.000 9.73 5.22 31.66 2.66
2165 14641 8.024285 AGATGTACTTAGATAGATGCGCTAAAC 58.976 37.037 9.73 0.00 31.66 2.01
2166 14642 8.112016 AGATGTACTTAGATAGATGCGCTAAA 57.888 34.615 9.73 0.00 31.66 1.85
2167 14643 7.689446 AGATGTACTTAGATAGATGCGCTAA 57.311 36.000 9.73 0.00 31.66 3.09
2168 14644 7.689446 AAGATGTACTTAGATAGATGCGCTA 57.311 36.000 9.73 0.00 37.03 4.26
2169 14645 6.582677 AAGATGTACTTAGATAGATGCGCT 57.417 37.500 9.73 0.00 37.03 5.92
2170 14646 7.644986 AAAAGATGTACTTAGATAGATGCGC 57.355 36.000 0.00 0.00 37.93 6.09
2171 14647 9.347934 CCTAAAAGATGTACTTAGATAGATGCG 57.652 37.037 0.00 0.00 37.93 4.73
2178 14654 8.478877 CCACACTCCTAAAAGATGTACTTAGAT 58.521 37.037 0.00 0.00 37.93 1.98
2179 14655 7.578955 GCCACACTCCTAAAAGATGTACTTAGA 60.579 40.741 0.00 0.00 37.93 2.10
2180 14656 6.535508 GCCACACTCCTAAAAGATGTACTTAG 59.464 42.308 0.00 0.00 37.93 2.18
2181 14657 6.403878 GCCACACTCCTAAAAGATGTACTTA 58.596 40.000 0.00 0.00 37.93 2.24
2182 14658 5.246307 GCCACACTCCTAAAAGATGTACTT 58.754 41.667 0.00 0.00 40.98 2.24
2183 14659 4.620803 CGCCACACTCCTAAAAGATGTACT 60.621 45.833 0.00 0.00 0.00 2.73
2184 14660 3.617263 CGCCACACTCCTAAAAGATGTAC 59.383 47.826 0.00 0.00 0.00 2.90
2185 14661 3.259876 ACGCCACACTCCTAAAAGATGTA 59.740 43.478 0.00 0.00 0.00 2.29
2186 14662 2.038557 ACGCCACACTCCTAAAAGATGT 59.961 45.455 0.00 0.00 0.00 3.06
2187 14663 2.699954 ACGCCACACTCCTAAAAGATG 58.300 47.619 0.00 0.00 0.00 2.90
2188 14664 3.418684 AACGCCACACTCCTAAAAGAT 57.581 42.857 0.00 0.00 0.00 2.40
2189 14665 2.922740 AACGCCACACTCCTAAAAGA 57.077 45.000 0.00 0.00 0.00 2.52
2190 14666 3.058914 CAGAAACGCCACACTCCTAAAAG 60.059 47.826 0.00 0.00 0.00 2.27
2191 14667 2.875933 CAGAAACGCCACACTCCTAAAA 59.124 45.455 0.00 0.00 0.00 1.52
2192 14668 2.489971 CAGAAACGCCACACTCCTAAA 58.510 47.619 0.00 0.00 0.00 1.85
2193 14669 1.876416 GCAGAAACGCCACACTCCTAA 60.876 52.381 0.00 0.00 0.00 2.69
2194 14670 0.320421 GCAGAAACGCCACACTCCTA 60.320 55.000 0.00 0.00 0.00 2.94
2195 14671 1.598130 GCAGAAACGCCACACTCCT 60.598 57.895 0.00 0.00 0.00 3.69
2196 14672 1.569479 GAGCAGAAACGCCACACTCC 61.569 60.000 0.00 0.00 0.00 3.85
2308 14789 2.418368 AATTTGGAGCGCACCTCATA 57.582 45.000 24.52 7.72 42.62 2.15
2309 14790 1.549203 AAATTTGGAGCGCACCTCAT 58.451 45.000 24.52 13.21 42.62 2.90
2322 14803 9.695526 TCAGATGTCCAAATGAGTTAAAATTTG 57.304 29.630 10.46 10.46 41.41 2.32
2329 14810 5.164620 TGCTCAGATGTCCAAATGAGTTA 57.835 39.130 11.46 2.66 41.00 2.24
2362 14843 7.654022 TTACAGACCCTGAATTTGTCTTTTT 57.346 32.000 0.45 0.00 37.25 1.94
2433 14914 1.750297 TGAGCAGCTCTCAGCAACA 59.250 52.632 23.15 0.00 46.34 3.33
2434 14915 4.689484 TGAGCAGCTCTCAGCAAC 57.311 55.556 23.15 0.00 46.34 4.17
2444 14925 4.006319 ACTTATTTGGACTTCTGAGCAGC 58.994 43.478 0.00 0.00 0.00 5.25
2465 14946 5.560953 CGTGAGGTTCTCTCCAAATTTCAAC 60.561 44.000 0.00 0.00 41.76 3.18
2561 18801 0.684535 TCATCTGCAACCGGTCAGAA 59.315 50.000 24.92 10.86 41.96 3.02


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.