Multiple sequence alignment - TraesCS1A01G008900

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G008900 chr1A 100.000 3936 0 0 1 3936 5232610 5236545 0.000000e+00 7269.0
1 TraesCS1A01G008900 chr1A 98.188 1766 27 3 1735 3497 5323318 5325081 0.000000e+00 3079.0
2 TraesCS1A01G008900 chr1A 96.125 1755 45 5 1 1735 5321486 5323237 0.000000e+00 2843.0
3 TraesCS1A01G008900 chr1A 95.308 1556 62 4 1943 3497 5187323 5188868 0.000000e+00 2459.0
4 TraesCS1A01G008900 chr1A 95.546 898 38 2 1944 2840 5170488 5171384 0.000000e+00 1435.0
5 TraesCS1A01G008900 chr1A 81.735 438 51 21 2523 2935 6202716 6202283 4.870000e-89 339.0
6 TraesCS1A01G008900 chr1A 76.829 656 90 31 2562 3155 5132360 5133015 2.950000e-81 313.0
7 TraesCS1A01G008900 chr1A 91.509 212 17 1 1735 1945 230523758 230523547 1.380000e-74 291.0
8 TraesCS1A01G008900 chr1A 75.439 627 106 35 2482 3084 5177062 5177664 1.080000e-65 261.0
9 TraesCS1A01G008900 chr1A 84.000 225 27 7 2100 2321 577837151 577837369 1.430000e-49 207.0
10 TraesCS1A01G008900 chr1A 82.870 216 34 2 2100 2315 23023349 23023137 1.440000e-44 191.0
11 TraesCS1A01G008900 chr1A 86.875 160 16 5 1967 2121 347334752 347334593 1.450000e-39 174.0
12 TraesCS1A01G008900 chr1A 83.444 151 24 1 3496 3645 461748993 461749143 5.300000e-29 139.0
13 TraesCS1A01G008900 chr1A 81.595 163 26 4 3496 3655 13193129 13193290 8.870000e-27 132.0
14 TraesCS1A01G008900 chr7D 96.626 1215 39 1 1 1215 565028580 565029792 0.000000e+00 2015.0
15 TraesCS1A01G008900 chr7D 96.774 1209 37 1 1 1209 582352743 582353949 0.000000e+00 2015.0
16 TraesCS1A01G008900 chr7D 91.296 540 21 6 1214 1734 572082652 572083184 0.000000e+00 713.0
17 TraesCS1A01G008900 chr7D 84.615 234 34 2 2100 2333 605758649 605758418 8.510000e-57 231.0
18 TraesCS1A01G008900 chr7D 88.608 158 13 4 1943 2098 201980960 201980806 1.870000e-43 187.0
19 TraesCS1A01G008900 chr5D 96.626 1215 39 1 1 1215 70700482 70699270 0.000000e+00 2015.0
20 TraesCS1A01G008900 chr5D 96.543 1215 40 1 1 1215 165210597 165209385 0.000000e+00 2010.0
21 TraesCS1A01G008900 chr5D 96.543 1215 40 1 1 1215 563558567 563557355 0.000000e+00 2010.0
22 TraesCS1A01G008900 chr5D 93.038 474 27 4 1213 1686 560013950 560013483 0.000000e+00 688.0
23 TraesCS1A01G008900 chr5D 96.657 359 10 2 1213 1570 198263401 198263758 2.620000e-166 595.0
24 TraesCS1A01G008900 chr5D 81.780 236 37 5 2100 2333 230372976 230372745 4.010000e-45 193.0
25 TraesCS1A01G008900 chr5D 92.537 134 8 2 1967 2098 332031438 332031305 1.440000e-44 191.0
26 TraesCS1A01G008900 chr5D 86.875 160 16 4 1967 2121 345946462 345946303 1.450000e-39 174.0
27 TraesCS1A01G008900 chr2D 96.626 1215 39 1 1 1215 594395744 594396956 0.000000e+00 2015.0
28 TraesCS1A01G008900 chr2D 77.039 466 83 18 3492 3936 322841315 322841777 3.040000e-61 246.0
29 TraesCS1A01G008900 chr2D 84.685 222 32 2 2100 2321 543814134 543814353 1.840000e-53 220.0
30 TraesCS1A01G008900 chr2D 85.047 214 29 3 2100 2313 9639803 9639593 8.570000e-52 215.0
31 TraesCS1A01G008900 chr2D 82.524 206 27 9 3491 3695 644290123 644290320 5.230000e-39 172.0
32 TraesCS1A01G008900 chr6D 96.543 1215 40 1 1 1215 68061825 68060613 0.000000e+00 2010.0
33 TraesCS1A01G008900 chr6D 96.691 1209 38 1 7 1215 219772811 219771605 0.000000e+00 2010.0
34 TraesCS1A01G008900 chr6D 80.556 216 34 6 2119 2331 132283415 132283625 4.070000e-35 159.0
35 TraesCS1A01G008900 chr6D 80.556 216 34 6 2119 2331 132385935 132386145 4.070000e-35 159.0
36 TraesCS1A01G008900 chr6D 81.564 179 27 5 2119 2295 420630553 420630379 4.100000e-30 143.0
37 TraesCS1A01G008900 chr6D 82.500 160 17 9 3496 3649 145006315 145006161 3.190000e-26 130.0
38 TraesCS1A01G008900 chr6D 81.955 133 19 5 3487 3615 400742681 400742550 1.500000e-19 108.0
39 TraesCS1A01G008900 chr6D 82.906 117 20 0 3496 3612 101714663 101714779 5.380000e-19 106.0
40 TraesCS1A01G008900 chr6D 80.000 150 24 5 2119 2266 138968886 138969031 5.380000e-19 106.0
41 TraesCS1A01G008900 chr6D 77.041 196 35 8 2133 2323 412629582 412629772 1.930000e-18 104.0
42 TraesCS1A01G008900 chr1D 89.650 1401 101 28 2100 3495 3747082 3748443 0.000000e+00 1744.0
43 TraesCS1A01G008900 chr1D 91.128 1285 100 10 2218 3495 3766650 3767927 0.000000e+00 1729.0
44 TraesCS1A01G008900 chr1D 90.782 1291 100 9 2218 3495 3772070 3773354 0.000000e+00 1707.0
45 TraesCS1A01G008900 chr1D 86.378 624 60 9 2355 2971 3754914 3755519 0.000000e+00 658.0
46 TraesCS1A01G008900 chr1D 85.942 626 63 9 2355 2971 3792256 3792865 0.000000e+00 645.0
47 TraesCS1A01G008900 chr1D 87.556 225 21 4 1561 1783 476858349 476858568 1.820000e-63 254.0
48 TraesCS1A01G008900 chr1D 89.000 200 22 0 2100 2299 3754366 3754565 8.450000e-62 248.0
49 TraesCS1A01G008900 chr1D 88.500 200 23 0 2100 2299 3791708 3791907 3.930000e-60 243.0
50 TraesCS1A01G008900 chr1D 86.250 160 21 1 3496 3654 23835689 23835848 5.230000e-39 172.0
51 TraesCS1A01G008900 chr1D 81.159 207 29 10 3496 3699 491989758 491989957 1.460000e-34 158.0
52 TraesCS1A01G008900 chr1D 84.277 159 20 4 3499 3654 296895782 296895938 2.450000e-32 150.0
53 TraesCS1A01G008900 chr1D 86.486 111 14 1 3490 3600 19017149 19017040 1.920000e-23 121.0
54 TraesCS1A01G008900 chr1D 80.870 115 16 6 3282 3393 3769017 3769128 7.010000e-13 86.1
55 TraesCS1A01G008900 chr1D 80.870 115 17 5 3282 3393 3774672 3774784 7.010000e-13 86.1
56 TraesCS1A01G008900 chr1D 80.342 117 17 5 3282 3393 3743114 3743229 2.520000e-12 84.2
57 TraesCS1A01G008900 chr1D 80.180 111 16 6 3282 3389 3749668 3749775 1.170000e-10 78.7
58 TraesCS1A01G008900 chr1B 90.528 1003 70 8 2512 3497 6456299 6457293 0.000000e+00 1303.0
59 TraesCS1A01G008900 chr1B 86.861 411 44 5 2100 2506 6455851 6456255 6.000000e-123 451.0
60 TraesCS1A01G008900 chr1B 83.983 231 31 5 1715 1945 124815536 124815760 2.380000e-52 217.0
61 TraesCS1A01G008900 chr7B 91.477 528 35 9 1213 1734 695038227 695038750 0.000000e+00 717.0
62 TraesCS1A01G008900 chr7B 82.383 193 30 3 3496 3687 355863021 355863210 8.750000e-37 165.0
63 TraesCS1A01G008900 chr3A 91.587 523 35 7 1214 1733 610132498 610131982 0.000000e+00 713.0
64 TraesCS1A01G008900 chr3A 96.944 360 11 0 1214 1573 409866590 409866231 4.350000e-169 604.0
65 TraesCS1A01G008900 chr3A 96.927 358 11 0 1213 1570 552415356 552415713 5.630000e-168 601.0
66 TraesCS1A01G008900 chr3A 92.857 210 15 0 1735 1944 56914581 56914372 4.940000e-79 305.0
67 TraesCS1A01G008900 chr3A 78.065 465 79 19 3490 3936 80540678 80541137 5.010000e-69 272.0
68 TraesCS1A01G008900 chr3A 78.095 315 57 9 3495 3800 684645399 684645088 5.190000e-44 189.0
69 TraesCS1A01G008900 chr3B 89.781 548 26 8 1213 1733 328958515 328957971 0.000000e+00 675.0
70 TraesCS1A01G008900 chr7A 89.272 522 22 18 1213 1734 193929876 193929389 1.200000e-174 623.0
71 TraesCS1A01G008900 chr7A 78.194 454 75 17 3492 3936 18295708 18295270 6.480000e-68 268.0
72 TraesCS1A01G008900 chr7A 86.498 237 23 8 1715 1945 130202451 130202684 6.530000e-63 252.0
73 TraesCS1A01G008900 chr7A 77.838 370 57 19 3584 3935 654106675 654107037 5.160000e-49 206.0
74 TraesCS1A01G008900 chrUn 90.065 463 16 8 3496 3936 153415665 153416119 1.230000e-159 573.0
75 TraesCS1A01G008900 chrUn 76.000 575 102 26 2529 3084 85794 85237 8.390000e-67 265.0
76 TraesCS1A01G008900 chrUn 76.000 575 102 26 2529 3084 231646072 231645515 8.390000e-67 265.0
77 TraesCS1A01G008900 chrUn 76.000 575 102 26 2529 3084 281343575 281343018 8.390000e-67 265.0
78 TraesCS1A01G008900 chrUn 84.454 238 28 7 1715 1945 16560509 16560744 3.960000e-55 226.0
79 TraesCS1A01G008900 chrUn 84.454 238 28 7 1715 1945 221964891 221965126 3.960000e-55 226.0
80 TraesCS1A01G008900 chrUn 84.034 238 29 7 1715 1945 203057501 203057736 1.840000e-53 220.0
81 TraesCS1A01G008900 chrUn 87.500 160 19 1 3495 3653 49292828 49292987 2.420000e-42 183.0
82 TraesCS1A01G008900 chrUn 83.140 172 27 1 2128 2299 85097698 85097867 5.270000e-34 156.0
83 TraesCS1A01G008900 chrUn 78.846 208 38 5 2128 2333 2363808 2363605 6.860000e-28 135.0
84 TraesCS1A01G008900 chrUn 81.250 160 28 2 3496 3654 93254642 93254800 1.150000e-25 128.0
85 TraesCS1A01G008900 chrUn 89.247 93 9 1 3494 3586 317195821 317195912 8.940000e-22 115.0
86 TraesCS1A01G008900 chrUn 82.114 123 22 0 3493 3615 87937054 87937176 5.380000e-19 106.0
87 TraesCS1A01G008900 chrUn 88.506 87 8 2 3494 3579 244074449 244074364 1.930000e-18 104.0
88 TraesCS1A01G008900 chrUn 88.506 87 8 2 3494 3579 256064368 256064453 1.930000e-18 104.0
89 TraesCS1A01G008900 chrUn 88.506 87 8 2 3494 3579 268674926 268675011 1.930000e-18 104.0
90 TraesCS1A01G008900 chrUn 87.209 86 10 1 3494 3579 63047124 63047040 3.240000e-16 97.1
91 TraesCS1A01G008900 chrUn 82.301 113 13 6 2132 2239 122421401 122421291 1.510000e-14 91.6
92 TraesCS1A01G008900 chrUn 76.923 169 34 3 2166 2334 324249389 324249226 1.510000e-14 91.6
93 TraesCS1A01G008900 chr6B 89.462 465 21 9 3495 3936 538181938 538181479 2.660000e-156 562.0
94 TraesCS1A01G008900 chr6B 89.224 464 23 9 3495 3936 294727125 294727583 4.440000e-154 555.0
95 TraesCS1A01G008900 chr6B 77.564 468 76 22 3495 3936 4184623 4184159 5.050000e-64 255.0
96 TraesCS1A01G008900 chr2A 92.857 210 15 0 1735 1944 181722658 181722449 4.940000e-79 305.0
97 TraesCS1A01G008900 chr2A 78.406 389 52 23 3490 3855 585202513 585202134 1.420000e-54 224.0
98 TraesCS1A01G008900 chr5A 92.381 210 16 0 1735 1944 31993732 31993523 2.300000e-77 300.0
99 TraesCS1A01G008900 chr5A 91.905 210 17 0 1735 1944 24625290 24625081 1.070000e-75 294.0
100 TraesCS1A01G008900 chr5A 91.509 212 17 1 1735 1945 639534466 639534677 1.380000e-74 291.0
101 TraesCS1A01G008900 chr5A 78.971 447 72 15 3498 3936 492891686 492891254 6.440000e-73 285.0
102 TraesCS1A01G008900 chr4A 91.981 212 17 0 1734 1945 686144441 686144230 8.270000e-77 298.0
103 TraesCS1A01G008900 chr4A 91.509 212 18 0 1735 1946 457345017 457344806 3.850000e-75 292.0
104 TraesCS1A01G008900 chr4A 83.706 313 43 7 1561 1872 664818300 664818605 4.980000e-74 289.0
105 TraesCS1A01G008900 chr4A 86.957 161 16 5 1967 2122 636569867 636570027 4.040000e-40 176.0
106 TraesCS1A01G008900 chr5B 84.211 323 32 14 1561 1872 615648216 615648530 2.970000e-76 296.0
107 TraesCS1A01G008900 chr2B 83.841 328 27 18 1561 1871 140692228 140692546 4.980000e-74 289.0
108 TraesCS1A01G008900 chr2B 89.474 152 15 1 3496 3646 318178100 318177949 1.440000e-44 191.0
109 TraesCS1A01G008900 chr2B 82.587 201 29 4 3496 3694 449680365 449680169 5.230000e-39 172.0
110 TraesCS1A01G008900 chr4B 78.667 450 74 16 3496 3931 314386198 314386639 2.990000e-71 279.0
111 TraesCS1A01G008900 chr4B 82.500 200 33 2 2100 2299 507956426 507956623 1.450000e-39 174.0
112 TraesCS1A01G008900 chr6A 89.545 220 19 2 3495 3713 58698512 58698728 3.870000e-70 276.0
113 TraesCS1A01G008900 chr6A 95.238 105 3 2 3834 3936 58698877 58698981 8.750000e-37 165.0
114 TraesCS1A01G008900 chr4D 86.250 160 17 5 1967 2121 508933992 508933833 6.760000e-38 169.0
115 TraesCS1A01G008900 chr4D 81.967 183 27 5 2119 2299 499689377 499689555 2.450000e-32 150.0
116 TraesCS1A01G008900 chr4D 80.833 120 23 0 3496 3615 12133757 12133638 1.160000e-15 95.3


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G008900 chr1A 5232610 5236545 3935 False 7269.000000 7269 100.000000 1 3936 1 chr1A.!!$F5 3935
1 TraesCS1A01G008900 chr1A 5321486 5325081 3595 False 2961.000000 3079 97.156500 1 3497 2 chr1A.!!$F9 3496
2 TraesCS1A01G008900 chr1A 5187323 5188868 1545 False 2459.000000 2459 95.308000 1943 3497 1 chr1A.!!$F4 1554
3 TraesCS1A01G008900 chr1A 5170488 5171384 896 False 1435.000000 1435 95.546000 1944 2840 1 chr1A.!!$F2 896
4 TraesCS1A01G008900 chr1A 5132360 5133015 655 False 313.000000 313 76.829000 2562 3155 1 chr1A.!!$F1 593
5 TraesCS1A01G008900 chr1A 5177062 5177664 602 False 261.000000 261 75.439000 2482 3084 1 chr1A.!!$F3 602
6 TraesCS1A01G008900 chr7D 565028580 565029792 1212 False 2015.000000 2015 96.626000 1 1215 1 chr7D.!!$F1 1214
7 TraesCS1A01G008900 chr7D 582352743 582353949 1206 False 2015.000000 2015 96.774000 1 1209 1 chr7D.!!$F3 1208
8 TraesCS1A01G008900 chr7D 572082652 572083184 532 False 713.000000 713 91.296000 1214 1734 1 chr7D.!!$F2 520
9 TraesCS1A01G008900 chr5D 70699270 70700482 1212 True 2015.000000 2015 96.626000 1 1215 1 chr5D.!!$R1 1214
10 TraesCS1A01G008900 chr5D 165209385 165210597 1212 True 2010.000000 2010 96.543000 1 1215 1 chr5D.!!$R2 1214
11 TraesCS1A01G008900 chr5D 563557355 563558567 1212 True 2010.000000 2010 96.543000 1 1215 1 chr5D.!!$R7 1214
12 TraesCS1A01G008900 chr2D 594395744 594396956 1212 False 2015.000000 2015 96.626000 1 1215 1 chr2D.!!$F3 1214
13 TraesCS1A01G008900 chr6D 68060613 68061825 1212 True 2010.000000 2010 96.543000 1 1215 1 chr6D.!!$R1 1214
14 TraesCS1A01G008900 chr6D 219771605 219772811 1206 True 2010.000000 2010 96.691000 7 1215 1 chr6D.!!$R3 1208
15 TraesCS1A01G008900 chr1D 3766650 3774784 8134 False 902.050000 1729 85.912500 2218 3495 4 chr1D.!!$F7 1277
16 TraesCS1A01G008900 chr1D 3743114 3749775 6661 False 635.633333 1744 83.390667 2100 3495 3 chr1D.!!$F5 1395
17 TraesCS1A01G008900 chr1D 3754366 3755519 1153 False 453.000000 658 87.689000 2100 2971 2 chr1D.!!$F6 871
18 TraesCS1A01G008900 chr1D 3791708 3792865 1157 False 444.000000 645 87.221000 2100 2971 2 chr1D.!!$F8 871
19 TraesCS1A01G008900 chr1B 6455851 6457293 1442 False 877.000000 1303 88.694500 2100 3497 2 chr1B.!!$F2 1397
20 TraesCS1A01G008900 chr7B 695038227 695038750 523 False 717.000000 717 91.477000 1213 1734 1 chr7B.!!$F2 521
21 TraesCS1A01G008900 chr3A 610131982 610132498 516 True 713.000000 713 91.587000 1214 1733 1 chr3A.!!$R3 519
22 TraesCS1A01G008900 chr3B 328957971 328958515 544 True 675.000000 675 89.781000 1213 1733 1 chr3B.!!$R1 520
23 TraesCS1A01G008900 chrUn 85237 85794 557 True 265.000000 265 76.000000 2529 3084 1 chrUn.!!$R1 555
24 TraesCS1A01G008900 chrUn 231645515 231646072 557 True 265.000000 265 76.000000 2529 3084 1 chrUn.!!$R5 555
25 TraesCS1A01G008900 chrUn 281343018 281343575 557 True 265.000000 265 76.000000 2529 3084 1 chrUn.!!$R7 555

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
75 76 1.271127 TGGCGACTCCATCCATTCCA 61.271 55.0 0.0 0.0 40.72 3.53 F
1641 1681 0.393077 AGTGAGTGTGTAGGTGTGGC 59.607 55.0 0.0 0.0 0.00 5.01 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1831 1954 1.373059 TGGTGCGCCATTAGTGTGA 59.627 52.632 16.89 0.0 40.46 3.58 R
3554 11313 0.036105 TAGCAGTGCTGGTGATGTGG 60.036 55.000 27.97 0.0 41.87 4.17 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 1.548719 TCGTCATGTTCCATCTTCGGT 59.451 47.619 0.00 0.00 0.00 4.69
75 76 1.271127 TGGCGACTCCATCCATTCCA 61.271 55.000 0.00 0.00 40.72 3.53
161 162 1.823250 GCATTGGACCACTTGGGAAGT 60.823 52.381 0.00 0.00 44.06 3.01
705 706 3.120095 CGACCACGTCTATGTGTTGTAGA 60.120 47.826 1.90 0.00 38.20 2.59
777 778 2.509336 ATTTCGCAGCGACCCTCG 60.509 61.111 19.37 0.00 43.89 4.63
858 859 6.349115 GGTTCTCGATGCCTAGATAATTCGTA 60.349 42.308 0.00 0.00 0.00 3.43
876 877 2.683362 CGTACAGTAGGAGATGCACTCA 59.317 50.000 15.22 0.00 46.54 3.41
1040 1041 2.579873 GACCAGCAGATGCACCATAAT 58.420 47.619 7.68 0.00 45.16 1.28
1064 1065 1.906105 AAGAATGCGGGCGGGAAGTA 61.906 55.000 0.00 0.00 0.00 2.24
1209 1210 2.281070 GCGCGTCCATGATCCCAT 60.281 61.111 8.43 0.00 0.00 4.00
1324 1326 6.346040 GCAAAATATTGGCAACTATCGCATTC 60.346 38.462 0.00 0.00 37.02 2.67
1332 1334 4.275936 GGCAACTATCGCATTCCAAATACT 59.724 41.667 0.00 0.00 0.00 2.12
1611 1644 3.050089 AGAGGAGGAGGTCGAGAGAATA 58.950 50.000 0.00 0.00 45.01 1.75
1641 1681 0.393077 AGTGAGTGTGTAGGTGTGGC 59.607 55.000 0.00 0.00 0.00 5.01
1646 1686 2.036733 GAGTGTGTAGGTGTGGCTGTTA 59.963 50.000 0.00 0.00 0.00 2.41
1831 1954 3.832490 TCTGGTGCGCCATTAGTATCTAT 59.168 43.478 21.54 0.00 45.05 1.98
1880 2003 6.034591 GGTGCGCCATTAGTATATAGTAGTG 58.965 44.000 12.58 11.39 34.09 2.74
1902 2025 3.354678 ACCACATTTCTGGTGCGC 58.645 55.556 0.00 0.00 43.38 6.09
1939 2062 3.823304 CCATCAATAGGCCTTTTCCTAGC 59.177 47.826 12.58 0.00 41.63 3.42
1989 2112 9.665719 TCAAACATATGTGTAGTGTCATGTAAT 57.334 29.630 9.63 0.00 37.67 1.89
2747 10448 0.392706 TGTGCTCGTCCTCAACATGT 59.607 50.000 0.00 0.00 0.00 3.21
2855 10562 2.009774 GCATCTGCACCGTCATAACTT 58.990 47.619 0.00 0.00 41.59 2.66
3498 11257 9.986157 ATTATATTGATGCCAACTCCATTATCT 57.014 29.630 0.00 0.00 34.72 1.98
3503 11262 9.986157 ATTGATGCCAACTCCATTATCTATAAT 57.014 29.630 0.00 0.00 34.72 1.28
3505 11264 9.890629 TGATGCCAACTCCATTATCTATAATAC 57.109 33.333 0.00 0.00 32.05 1.89
3507 11266 8.449423 TGCCAACTCCATTATCTATAATACCT 57.551 34.615 0.00 0.00 32.05 3.08
3508 11267 9.555411 TGCCAACTCCATTATCTATAATACCTA 57.445 33.333 0.00 0.00 32.05 3.08
3526 11285 8.808240 AATACCTAAATAGTTCATCCCCACTA 57.192 34.615 0.00 0.00 0.00 2.74
3528 11287 7.079451 ACCTAAATAGTTCATCCCCACTATG 57.921 40.000 0.00 0.00 36.52 2.23
3530 11289 5.994416 AAATAGTTCATCCCCACTATGGT 57.006 39.130 0.00 0.00 36.52 3.55
3532 11291 7.648177 AAATAGTTCATCCCCACTATGGTAT 57.352 36.000 0.00 0.00 36.52 2.73
3533 11292 7.648177 AATAGTTCATCCCCACTATGGTATT 57.352 36.000 0.00 0.00 36.52 1.89
3534 11293 5.994416 AGTTCATCCCCACTATGGTATTT 57.006 39.130 0.00 0.00 35.17 1.40
3535 11294 5.941788 AGTTCATCCCCACTATGGTATTTC 58.058 41.667 0.00 0.00 35.17 2.17
3538 11297 5.476983 TCATCCCCACTATGGTATTTCTCT 58.523 41.667 0.00 0.00 35.17 3.10
3541 11300 5.285401 TCCCCACTATGGTATTTCTCTCAA 58.715 41.667 0.00 0.00 35.17 3.02
3546 11305 6.017605 CCACTATGGTATTTCTCTCAACATGC 60.018 42.308 0.00 0.00 31.35 4.06
3547 11306 6.539826 CACTATGGTATTTCTCTCAACATGCA 59.460 38.462 0.00 0.00 0.00 3.96
3548 11307 6.765036 ACTATGGTATTTCTCTCAACATGCAG 59.235 38.462 0.00 0.00 0.00 4.41
3551 11310 2.574006 TTTCTCTCAACATGCAGCCT 57.426 45.000 0.00 0.00 0.00 4.58
3552 11311 3.701205 TTTCTCTCAACATGCAGCCTA 57.299 42.857 0.00 0.00 0.00 3.93
3553 11312 2.680312 TCTCTCAACATGCAGCCTAC 57.320 50.000 0.00 0.00 0.00 3.18
3554 11313 1.208052 TCTCTCAACATGCAGCCTACC 59.792 52.381 0.00 0.00 0.00 3.18
3555 11314 0.253044 TCTCAACATGCAGCCTACCC 59.747 55.000 0.00 0.00 0.00 3.69
3556 11315 0.035152 CTCAACATGCAGCCTACCCA 60.035 55.000 0.00 0.00 0.00 4.51
3557 11316 0.322456 TCAACATGCAGCCTACCCAC 60.322 55.000 0.00 0.00 0.00 4.61
3559 11318 0.332632 AACATGCAGCCTACCCACAT 59.667 50.000 0.00 0.00 0.00 3.21
3560 11319 0.107017 ACATGCAGCCTACCCACATC 60.107 55.000 0.00 0.00 0.00 3.06
3561 11320 0.107066 CATGCAGCCTACCCACATCA 60.107 55.000 0.00 0.00 0.00 3.07
3563 11322 1.452108 GCAGCCTACCCACATCACC 60.452 63.158 0.00 0.00 0.00 4.02
3565 11324 0.107508 CAGCCTACCCACATCACCAG 60.108 60.000 0.00 0.00 0.00 4.00
3566 11325 1.452108 GCCTACCCACATCACCAGC 60.452 63.158 0.00 0.00 0.00 4.85
3567 11326 1.990424 CCTACCCACATCACCAGCA 59.010 57.895 0.00 0.00 0.00 4.41
3568 11327 0.392998 CCTACCCACATCACCAGCAC 60.393 60.000 0.00 0.00 0.00 4.40
3571 11330 2.338015 CCCACATCACCAGCACTGC 61.338 63.158 0.00 0.00 0.00 4.40
3572 11331 1.303074 CCACATCACCAGCACTGCT 60.303 57.895 0.00 0.00 40.77 4.24
3574 11333 1.081892 CACATCACCAGCACTGCTAC 58.918 55.000 2.39 0.00 36.40 3.58
3575 11334 0.686789 ACATCACCAGCACTGCTACA 59.313 50.000 2.39 0.00 36.40 2.74
3576 11335 1.280133 ACATCACCAGCACTGCTACAT 59.720 47.619 2.39 0.00 36.40 2.29
3577 11336 1.938577 CATCACCAGCACTGCTACATC 59.061 52.381 2.39 0.00 36.40 3.06
3578 11337 0.975887 TCACCAGCACTGCTACATCA 59.024 50.000 2.39 0.00 36.40 3.07
3579 11338 1.066645 TCACCAGCACTGCTACATCAG 60.067 52.381 2.39 0.00 36.40 2.90
3592 11351 5.874892 GCTACATCAGCGTTTAGTTAGAG 57.125 43.478 0.00 0.00 41.37 2.43
3593 11352 4.740695 GCTACATCAGCGTTTAGTTAGAGG 59.259 45.833 0.00 0.00 41.37 3.69
3594 11353 3.522553 ACATCAGCGTTTAGTTAGAGGC 58.477 45.455 0.00 0.00 0.00 4.70
3595 11354 3.195825 ACATCAGCGTTTAGTTAGAGGCT 59.804 43.478 0.00 0.00 37.47 4.58
3596 11355 3.955650 TCAGCGTTTAGTTAGAGGCTT 57.044 42.857 0.00 0.00 35.06 4.35
3597 11356 5.105473 ACATCAGCGTTTAGTTAGAGGCTTA 60.105 40.000 0.00 0.00 35.06 3.09
3601 11360 4.021719 AGCGTTTAGTTAGAGGCTTACACA 60.022 41.667 0.00 0.00 33.63 3.72
3602 11361 4.868734 GCGTTTAGTTAGAGGCTTACACAT 59.131 41.667 0.00 0.00 0.00 3.21
3603 11362 6.038356 GCGTTTAGTTAGAGGCTTACACATA 58.962 40.000 0.00 0.00 0.00 2.29
3605 11364 6.696148 CGTTTAGTTAGAGGCTTACACATAGG 59.304 42.308 0.00 0.00 0.00 2.57
3607 11366 5.855740 AGTTAGAGGCTTACACATAGGAC 57.144 43.478 0.00 0.00 0.00 3.85
3608 11367 4.650131 AGTTAGAGGCTTACACATAGGACC 59.350 45.833 0.00 0.00 0.00 4.46
3610 11369 2.116238 GAGGCTTACACATAGGACCCA 58.884 52.381 0.00 0.00 0.00 4.51
3614 11373 2.679930 GCTTACACATAGGACCCACCAC 60.680 54.545 0.00 0.00 42.04 4.16
3615 11374 2.328992 TACACATAGGACCCACCACA 57.671 50.000 0.00 0.00 42.04 4.17
3616 11375 1.440618 ACACATAGGACCCACCACAA 58.559 50.000 0.00 0.00 42.04 3.33
3618 11377 2.290896 ACACATAGGACCCACCACAATG 60.291 50.000 0.00 0.00 42.04 2.82
3619 11378 2.026356 CACATAGGACCCACCACAATGA 60.026 50.000 0.00 0.00 42.04 2.57
3620 11379 2.647299 ACATAGGACCCACCACAATGAA 59.353 45.455 0.00 0.00 42.04 2.57
3621 11380 3.075283 ACATAGGACCCACCACAATGAAA 59.925 43.478 0.00 0.00 42.04 2.69
3623 11382 2.316108 AGGACCCACCACAATGAAAAC 58.684 47.619 0.00 0.00 42.04 2.43
3624 11383 2.035632 GGACCCACCACAATGAAAACA 58.964 47.619 0.00 0.00 38.79 2.83
3626 11385 1.412343 ACCCACCACAATGAAAACAGC 59.588 47.619 0.00 0.00 0.00 4.40
3627 11386 1.270252 CCCACCACAATGAAAACAGCC 60.270 52.381 0.00 0.00 0.00 4.85
3629 11388 2.472816 CACCACAATGAAAACAGCCAC 58.527 47.619 0.00 0.00 0.00 5.01
3633 11392 4.343526 ACCACAATGAAAACAGCCACATTA 59.656 37.500 0.00 0.00 32.75 1.90
3634 11393 4.925054 CCACAATGAAAACAGCCACATTAG 59.075 41.667 0.00 0.00 32.75 1.73
3635 11394 4.386652 CACAATGAAAACAGCCACATTAGC 59.613 41.667 0.00 0.00 32.75 3.09
3636 11395 4.281688 ACAATGAAAACAGCCACATTAGCT 59.718 37.500 0.00 0.00 42.70 3.32
3637 11396 5.221501 ACAATGAAAACAGCCACATTAGCTT 60.222 36.000 0.00 0.00 38.95 3.74
3639 11398 3.888323 TGAAAACAGCCACATTAGCTTCA 59.112 39.130 0.00 0.00 38.95 3.02
3640 11399 4.022935 TGAAAACAGCCACATTAGCTTCAG 60.023 41.667 0.00 0.00 38.95 3.02
3641 11400 2.867109 ACAGCCACATTAGCTTCAGT 57.133 45.000 0.00 0.00 38.95 3.41
3642 11401 3.146104 ACAGCCACATTAGCTTCAGTT 57.854 42.857 0.00 0.00 38.95 3.16
3643 11402 4.286297 ACAGCCACATTAGCTTCAGTTA 57.714 40.909 0.00 0.00 38.95 2.24
3644 11403 4.003648 ACAGCCACATTAGCTTCAGTTAC 58.996 43.478 0.00 0.00 38.95 2.50
3646 11405 4.331168 CAGCCACATTAGCTTCAGTTACTC 59.669 45.833 0.00 0.00 38.95 2.59
3649 11408 4.872691 CCACATTAGCTTCAGTTACTCCTG 59.127 45.833 0.00 0.00 0.00 3.86
3650 11409 4.872691 CACATTAGCTTCAGTTACTCCTGG 59.127 45.833 0.00 0.00 33.14 4.45
3652 11411 5.720041 ACATTAGCTTCAGTTACTCCTGGTA 59.280 40.000 0.00 0.00 33.14 3.25
3653 11412 5.916661 TTAGCTTCAGTTACTCCTGGTAG 57.083 43.478 0.00 0.00 33.14 3.18
3654 11413 3.780626 AGCTTCAGTTACTCCTGGTAGT 58.219 45.455 0.00 0.00 33.14 2.73
3655 11414 4.931914 AGCTTCAGTTACTCCTGGTAGTA 58.068 43.478 0.00 0.00 33.14 1.82
3656 11415 4.951094 AGCTTCAGTTACTCCTGGTAGTAG 59.049 45.833 0.00 0.00 33.62 2.57
3657 11416 4.098196 GCTTCAGTTACTCCTGGTAGTAGG 59.902 50.000 0.00 0.00 39.29 3.18
3658 11417 4.942363 TCAGTTACTCCTGGTAGTAGGT 57.058 45.455 0.00 0.00 38.99 3.08
3659 11418 4.853007 TCAGTTACTCCTGGTAGTAGGTC 58.147 47.826 0.00 0.00 38.99 3.85
3660 11419 3.952967 CAGTTACTCCTGGTAGTAGGTCC 59.047 52.174 0.00 0.00 38.99 4.46
3661 11420 2.948315 GTTACTCCTGGTAGTAGGTCCG 59.052 54.545 0.00 0.00 38.99 4.79
3662 11421 1.293062 ACTCCTGGTAGTAGGTCCGA 58.707 55.000 0.00 0.00 38.99 4.55
3663 11422 1.064832 ACTCCTGGTAGTAGGTCCGAC 60.065 57.143 0.00 0.00 38.99 4.79
3664 11423 1.212441 CTCCTGGTAGTAGGTCCGACT 59.788 57.143 9.79 9.79 38.99 4.18
3665 11424 2.437281 CTCCTGGTAGTAGGTCCGACTA 59.563 54.545 7.71 7.71 38.99 2.59
3666 11425 2.437281 TCCTGGTAGTAGGTCCGACTAG 59.563 54.545 11.78 3.18 38.99 2.57
3667 11426 2.437281 CCTGGTAGTAGGTCCGACTAGA 59.563 54.545 11.78 2.16 32.99 2.43
3668 11427 3.494749 CCTGGTAGTAGGTCCGACTAGAG 60.495 56.522 11.78 10.47 32.99 2.43
3669 11428 3.378512 TGGTAGTAGGTCCGACTAGAGA 58.621 50.000 11.78 0.00 30.08 3.10
3670 11429 3.387374 TGGTAGTAGGTCCGACTAGAGAG 59.613 52.174 11.78 0.00 30.08 3.20
3671 11430 3.244181 GGTAGTAGGTCCGACTAGAGAGG 60.244 56.522 11.78 0.00 30.08 3.69
3672 11431 1.141455 AGTAGGTCCGACTAGAGAGGC 59.859 57.143 2.27 0.00 0.00 4.70
3673 11432 1.141455 GTAGGTCCGACTAGAGAGGCT 59.859 57.143 0.00 0.00 0.00 4.58
3674 11433 0.106918 AGGTCCGACTAGAGAGGCTG 60.107 60.000 0.00 0.00 0.00 4.85
3675 11434 0.107116 GGTCCGACTAGAGAGGCTGA 60.107 60.000 0.00 0.00 0.00 4.26
3676 11435 1.018910 GTCCGACTAGAGAGGCTGAC 58.981 60.000 0.00 0.00 37.72 3.51
3677 11436 0.107116 TCCGACTAGAGAGGCTGACC 60.107 60.000 0.00 0.00 0.00 4.02
3678 11437 0.394488 CCGACTAGAGAGGCTGACCA 60.394 60.000 0.00 0.00 39.06 4.02
3679 11438 0.736053 CGACTAGAGAGGCTGACCAC 59.264 60.000 0.00 0.00 39.06 4.16
3680 11439 0.736053 GACTAGAGAGGCTGACCACG 59.264 60.000 0.00 0.00 39.06 4.94
3681 11440 0.038455 ACTAGAGAGGCTGACCACGT 59.962 55.000 0.00 0.00 39.06 4.49
3682 11441 1.281287 ACTAGAGAGGCTGACCACGTA 59.719 52.381 0.00 0.00 39.06 3.57
3683 11442 1.671845 CTAGAGAGGCTGACCACGTAC 59.328 57.143 0.00 0.00 39.06 3.67
3684 11443 1.136984 GAGAGGCTGACCACGTACG 59.863 63.158 15.01 15.01 39.06 3.67
3685 11444 1.584380 GAGAGGCTGACCACGTACGT 61.584 60.000 16.72 16.72 39.06 3.57
3686 11445 1.154073 GAGGCTGACCACGTACGTC 60.154 63.158 19.94 8.38 39.06 4.34
3687 11446 1.584380 GAGGCTGACCACGTACGTCT 61.584 60.000 19.94 10.72 39.06 4.18
3688 11447 1.154073 GGCTGACCACGTACGTCTC 60.154 63.158 19.94 15.98 35.26 3.36
3689 11448 1.584380 GGCTGACCACGTACGTCTCT 61.584 60.000 19.94 3.04 35.26 3.10
3690 11449 0.240411 GCTGACCACGTACGTCTCTT 59.760 55.000 19.94 2.33 0.00 2.85
3691 11450 1.335689 GCTGACCACGTACGTCTCTTT 60.336 52.381 19.94 0.33 0.00 2.52
3692 11451 2.582687 CTGACCACGTACGTCTCTTTC 58.417 52.381 19.94 10.63 0.00 2.62
3693 11452 1.267806 TGACCACGTACGTCTCTTTCC 59.732 52.381 19.94 4.40 0.00 3.13
3694 11453 1.538950 GACCACGTACGTCTCTTTCCT 59.461 52.381 19.94 0.00 0.00 3.36
3695 11454 1.959282 ACCACGTACGTCTCTTTCCTT 59.041 47.619 19.94 0.00 0.00 3.36
3696 11455 2.363359 ACCACGTACGTCTCTTTCCTTT 59.637 45.455 19.94 0.00 0.00 3.11
3697 11456 3.181472 ACCACGTACGTCTCTTTCCTTTT 60.181 43.478 19.94 0.00 0.00 2.27
3698 11457 3.427863 CCACGTACGTCTCTTTCCTTTTC 59.572 47.826 19.94 0.00 0.00 2.29
3699 11458 4.046462 CACGTACGTCTCTTTCCTTTTCA 58.954 43.478 19.94 0.00 0.00 2.69
3700 11459 4.505191 CACGTACGTCTCTTTCCTTTTCAA 59.495 41.667 19.94 0.00 0.00 2.69
3701 11460 5.005971 CACGTACGTCTCTTTCCTTTTCAAA 59.994 40.000 19.94 0.00 0.00 2.69
3702 11461 5.581874 ACGTACGTCTCTTTCCTTTTCAAAA 59.418 36.000 16.72 0.00 0.00 2.44
3703 11462 6.092533 ACGTACGTCTCTTTCCTTTTCAAAAA 59.907 34.615 16.72 0.00 0.00 1.94
3723 11482 4.680171 AAACTTTAATGTGACTAGCGCC 57.320 40.909 2.29 0.00 0.00 6.53
3724 11483 3.611766 ACTTTAATGTGACTAGCGCCT 57.388 42.857 2.29 0.00 0.00 5.52
3725 11484 3.522553 ACTTTAATGTGACTAGCGCCTC 58.477 45.455 2.29 0.00 0.00 4.70
3726 11485 3.056107 ACTTTAATGTGACTAGCGCCTCA 60.056 43.478 2.29 0.00 0.00 3.86
3727 11486 2.579207 TAATGTGACTAGCGCCTCAC 57.421 50.000 18.80 18.80 37.83 3.51
3728 11487 0.108138 AATGTGACTAGCGCCTCACC 60.108 55.000 21.37 9.24 36.70 4.02
3729 11488 1.257750 ATGTGACTAGCGCCTCACCA 61.258 55.000 21.37 13.16 36.70 4.17
3730 11489 1.292223 GTGACTAGCGCCTCACCAA 59.708 57.895 16.06 0.00 32.15 3.67
3731 11490 0.108138 GTGACTAGCGCCTCACCAAT 60.108 55.000 16.06 0.00 32.15 3.16
3732 11491 0.613260 TGACTAGCGCCTCACCAATT 59.387 50.000 2.29 0.00 0.00 2.32
3733 11492 1.291132 GACTAGCGCCTCACCAATTC 58.709 55.000 2.29 0.00 0.00 2.17
3734 11493 0.107654 ACTAGCGCCTCACCAATTCC 60.108 55.000 2.29 0.00 0.00 3.01
3735 11494 0.815615 CTAGCGCCTCACCAATTCCC 60.816 60.000 2.29 0.00 0.00 3.97
3736 11495 2.265467 TAGCGCCTCACCAATTCCCC 62.265 60.000 2.29 0.00 0.00 4.81
3737 11496 2.354729 CGCCTCACCAATTCCCCA 59.645 61.111 0.00 0.00 0.00 4.96
3738 11497 2.046285 CGCCTCACCAATTCCCCAC 61.046 63.158 0.00 0.00 0.00 4.61
3739 11498 1.682344 GCCTCACCAATTCCCCACC 60.682 63.158 0.00 0.00 0.00 4.61
3740 11499 1.000359 CCTCACCAATTCCCCACCC 60.000 63.158 0.00 0.00 0.00 4.61
3741 11500 1.773635 CTCACCAATTCCCCACCCA 59.226 57.895 0.00 0.00 0.00 4.51
3742 11501 0.323725 CTCACCAATTCCCCACCCAG 60.324 60.000 0.00 0.00 0.00 4.45
3743 11502 1.984026 CACCAATTCCCCACCCAGC 60.984 63.158 0.00 0.00 0.00 4.85
3744 11503 2.755469 CCAATTCCCCACCCAGCG 60.755 66.667 0.00 0.00 0.00 5.18
3745 11504 2.755469 CAATTCCCCACCCAGCGG 60.755 66.667 0.00 0.00 0.00 5.52
3746 11505 2.938798 AATTCCCCACCCAGCGGA 60.939 61.111 0.00 0.00 0.00 5.54
3747 11506 2.316586 AATTCCCCACCCAGCGGAT 61.317 57.895 0.00 0.00 0.00 4.18
3748 11507 1.874299 AATTCCCCACCCAGCGGATT 61.874 55.000 0.00 0.00 0.00 3.01
3749 11508 2.284515 ATTCCCCACCCAGCGGATTC 62.285 60.000 0.00 0.00 0.00 2.52
3750 11509 4.856801 CCCCACCCAGCGGATTCG 62.857 72.222 0.00 0.00 39.81 3.34
3751 11510 4.096003 CCCACCCAGCGGATTCGT 62.096 66.667 0.00 0.00 38.89 3.85
3752 11511 2.511600 CCACCCAGCGGATTCGTC 60.512 66.667 0.00 0.00 38.89 4.20
3753 11512 2.579201 CACCCAGCGGATTCGTCT 59.421 61.111 0.00 0.00 38.89 4.18
3754 11513 1.519455 CACCCAGCGGATTCGTCTC 60.519 63.158 0.00 0.00 38.89 3.36
3755 11514 2.107141 CCCAGCGGATTCGTCTCC 59.893 66.667 0.00 0.00 38.89 3.71
3756 11515 2.107141 CCAGCGGATTCGTCTCCC 59.893 66.667 0.00 0.00 38.89 4.30
3757 11516 2.427245 CCAGCGGATTCGTCTCCCT 61.427 63.158 0.00 0.00 38.89 4.20
3758 11517 1.107538 CCAGCGGATTCGTCTCCCTA 61.108 60.000 0.00 0.00 38.89 3.53
3759 11518 0.962489 CAGCGGATTCGTCTCCCTAT 59.038 55.000 0.00 0.00 38.89 2.57
3760 11519 1.341531 CAGCGGATTCGTCTCCCTATT 59.658 52.381 0.00 0.00 38.89 1.73
3761 11520 1.614413 AGCGGATTCGTCTCCCTATTC 59.386 52.381 0.00 0.00 38.89 1.75
3762 11521 1.340248 GCGGATTCGTCTCCCTATTCA 59.660 52.381 0.00 0.00 38.89 2.57
3763 11522 2.028930 GCGGATTCGTCTCCCTATTCAT 60.029 50.000 0.00 0.00 38.89 2.57
3764 11523 3.839293 CGGATTCGTCTCCCTATTCATC 58.161 50.000 0.00 0.00 31.04 2.92
3765 11524 3.508012 CGGATTCGTCTCCCTATTCATCT 59.492 47.826 0.00 0.00 31.04 2.90
3766 11525 4.021894 CGGATTCGTCTCCCTATTCATCTT 60.022 45.833 0.00 0.00 31.04 2.40
3767 11526 5.474825 GGATTCGTCTCCCTATTCATCTTC 58.525 45.833 0.00 0.00 0.00 2.87
3768 11527 5.245075 GGATTCGTCTCCCTATTCATCTTCT 59.755 44.000 0.00 0.00 0.00 2.85
3769 11528 5.776173 TTCGTCTCCCTATTCATCTTCTC 57.224 43.478 0.00 0.00 0.00 2.87
3770 11529 4.145807 TCGTCTCCCTATTCATCTTCTCC 58.854 47.826 0.00 0.00 0.00 3.71
3771 11530 3.891977 CGTCTCCCTATTCATCTTCTCCA 59.108 47.826 0.00 0.00 0.00 3.86
3772 11531 4.342378 CGTCTCCCTATTCATCTTCTCCAA 59.658 45.833 0.00 0.00 0.00 3.53
3773 11532 5.011533 CGTCTCCCTATTCATCTTCTCCAAT 59.988 44.000 0.00 0.00 0.00 3.16
3774 11533 6.463360 GTCTCCCTATTCATCTTCTCCAATC 58.537 44.000 0.00 0.00 0.00 2.67
3775 11534 6.269769 GTCTCCCTATTCATCTTCTCCAATCT 59.730 42.308 0.00 0.00 0.00 2.40
3776 11535 6.496565 TCTCCCTATTCATCTTCTCCAATCTC 59.503 42.308 0.00 0.00 0.00 2.75
3777 11536 5.545723 TCCCTATTCATCTTCTCCAATCTCC 59.454 44.000 0.00 0.00 0.00 3.71
3778 11537 5.309020 CCCTATTCATCTTCTCCAATCTCCA 59.691 44.000 0.00 0.00 0.00 3.86
3779 11538 6.012683 CCCTATTCATCTTCTCCAATCTCCAT 60.013 42.308 0.00 0.00 0.00 3.41
3780 11539 7.104939 CCTATTCATCTTCTCCAATCTCCATC 58.895 42.308 0.00 0.00 0.00 3.51
3781 11540 5.963214 TTCATCTTCTCCAATCTCCATCA 57.037 39.130 0.00 0.00 0.00 3.07
3782 11541 5.963214 TCATCTTCTCCAATCTCCATCAA 57.037 39.130 0.00 0.00 0.00 2.57
3783 11542 6.317663 TCATCTTCTCCAATCTCCATCAAA 57.682 37.500 0.00 0.00 0.00 2.69
3784 11543 6.907961 TCATCTTCTCCAATCTCCATCAAAT 58.092 36.000 0.00 0.00 0.00 2.32
3785 11544 6.996879 TCATCTTCTCCAATCTCCATCAAATC 59.003 38.462 0.00 0.00 0.00 2.17
3786 11545 5.688807 TCTTCTCCAATCTCCATCAAATCC 58.311 41.667 0.00 0.00 0.00 3.01
3787 11546 4.443978 TCTCCAATCTCCATCAAATCCC 57.556 45.455 0.00 0.00 0.00 3.85
3788 11547 3.787577 TCTCCAATCTCCATCAAATCCCA 59.212 43.478 0.00 0.00 0.00 4.37
3793 11552 6.562223 TCCAATCTCCATCAAATCCCACTATA 59.438 38.462 0.00 0.00 0.00 1.31
3794 11553 6.656693 CCAATCTCCATCAAATCCCACTATAC 59.343 42.308 0.00 0.00 0.00 1.47
3798 11557 7.815383 TCTCCATCAAATCCCACTATACAATT 58.185 34.615 0.00 0.00 0.00 2.32
3800 11559 8.918202 TCCATCAAATCCCACTATACAATTAC 57.082 34.615 0.00 0.00 0.00 1.89
3802 11561 9.003658 CCATCAAATCCCACTATACAATTACTC 57.996 37.037 0.00 0.00 0.00 2.59
3804 11563 8.096621 TCAAATCCCACTATACAATTACTCCA 57.903 34.615 0.00 0.00 0.00 3.86
3806 11565 9.003658 CAAATCCCACTATACAATTACTCCATC 57.996 37.037 0.00 0.00 0.00 3.51
3809 11568 6.724441 TCCCACTATACAATTACTCCATCGAT 59.276 38.462 0.00 0.00 0.00 3.59
3810 11569 7.234782 TCCCACTATACAATTACTCCATCGATT 59.765 37.037 0.00 0.00 0.00 3.34
3816 11575 6.668541 ACAATTACTCCATCGATTCAGTTG 57.331 37.500 10.55 6.69 0.00 3.16
3820 11579 2.499289 ACTCCATCGATTCAGTTGCTCT 59.501 45.455 0.00 0.00 0.00 4.09
3821 11580 3.055530 ACTCCATCGATTCAGTTGCTCTT 60.056 43.478 0.00 0.00 0.00 2.85
3822 11581 4.160439 ACTCCATCGATTCAGTTGCTCTTA 59.840 41.667 0.00 0.00 0.00 2.10
3823 11582 4.433615 TCCATCGATTCAGTTGCTCTTAC 58.566 43.478 0.00 0.00 0.00 2.34
3825 11584 3.953712 TCGATTCAGTTGCTCTTACCA 57.046 42.857 0.00 0.00 0.00 3.25
3826 11585 4.471904 TCGATTCAGTTGCTCTTACCAT 57.528 40.909 0.00 0.00 0.00 3.55
3827 11586 4.433615 TCGATTCAGTTGCTCTTACCATC 58.566 43.478 0.00 0.00 0.00 3.51
3829 11588 4.269603 CGATTCAGTTGCTCTTACCATCTG 59.730 45.833 0.00 0.00 33.45 2.90
3846 11605 3.028094 TCTGGTATATATCTCCGGGCC 57.972 52.381 0.00 0.00 0.00 5.80
3847 11606 1.681793 CTGGTATATATCTCCGGGCCG 59.318 57.143 21.46 21.46 0.00 6.13
3848 11607 0.388294 GGTATATATCTCCGGGCCGC 59.612 60.000 23.20 1.82 0.00 6.53
3849 11608 1.108776 GTATATATCTCCGGGCCGCA 58.891 55.000 23.20 4.16 0.00 5.69
3858 11617 4.910722 CGGGCCGCATGCGATTTG 62.911 66.667 39.90 24.13 42.61 2.32
3872 11631 2.665519 GCGATTTGGCAAGGTATATGCG 60.666 50.000 0.00 0.00 44.75 4.73
3875 11634 4.669965 CGATTTGGCAAGGTATATGCGATG 60.670 45.833 0.00 0.00 44.75 3.84
3876 11635 2.183478 TGGCAAGGTATATGCGATGG 57.817 50.000 0.00 0.00 44.75 3.51
3877 11636 0.804989 GGCAAGGTATATGCGATGGC 59.195 55.000 0.00 0.00 44.75 4.40
3878 11637 0.443869 GCAAGGTATATGCGATGGCG 59.556 55.000 0.00 0.00 44.10 5.69
3880 11639 0.685097 AAGGTATATGCGATGGCGGT 59.315 50.000 0.00 0.00 44.10 5.68
3881 11640 0.246635 AGGTATATGCGATGGCGGTC 59.753 55.000 0.00 0.00 44.10 4.79
3882 11641 0.037697 GGTATATGCGATGGCGGTCA 60.038 55.000 0.00 0.00 44.10 4.02
3883 11642 1.405526 GGTATATGCGATGGCGGTCAT 60.406 52.381 0.00 0.00 44.10 3.06
3884 11643 1.927174 GTATATGCGATGGCGGTCATC 59.073 52.381 12.50 12.50 46.63 2.92
3889 11648 2.427753 GATGGCGGTCATCCCTCC 59.572 66.667 11.49 0.00 44.92 4.30
3891 11650 1.694169 ATGGCGGTCATCCCTCCTT 60.694 57.895 0.00 0.00 0.00 3.36
3893 11652 2.514824 GCGGTCATCCCTCCTTGC 60.515 66.667 0.00 0.00 0.00 4.01
3894 11653 2.202932 CGGTCATCCCTCCTTGCG 60.203 66.667 0.00 0.00 0.00 4.85
3896 11655 1.832912 GGTCATCCCTCCTTGCGAT 59.167 57.895 0.00 0.00 0.00 4.58
3897 11656 0.533755 GGTCATCCCTCCTTGCGATG 60.534 60.000 0.00 0.00 35.71 3.84
3898 11657 0.465705 GTCATCCCTCCTTGCGATGA 59.534 55.000 0.00 0.00 39.97 2.92
3899 11658 0.755079 TCATCCCTCCTTGCGATGAG 59.245 55.000 0.00 0.00 37.94 2.90
3902 11661 1.043816 TCCCTCCTTGCGATGAGATC 58.956 55.000 7.76 0.00 0.00 2.75
3903 11662 0.034616 CCCTCCTTGCGATGAGATCC 59.965 60.000 7.76 0.00 0.00 3.36
3904 11663 0.319383 CCTCCTTGCGATGAGATCCG 60.319 60.000 7.76 0.00 0.00 4.18
3906 11665 1.609072 CTCCTTGCGATGAGATCCGTA 59.391 52.381 0.00 0.00 0.00 4.02
3907 11666 1.609072 TCCTTGCGATGAGATCCGTAG 59.391 52.381 0.00 0.00 0.00 3.51
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
27 28 0.311790 ACTTCGACAAGTACGGCGAA 59.688 50.000 16.62 10.45 41.39 4.70
75 76 4.017683 AGGAGAGGCAAAAGGAAGATCATT 60.018 41.667 0.00 0.00 0.00 2.57
161 162 3.737559 AAAATGAGCCATGGGTACTGA 57.262 42.857 18.30 0.00 0.00 3.41
197 198 3.561120 AAATCCAAGACCGCGGGCA 62.561 57.895 36.60 13.83 0.00 5.36
251 252 2.812011 GCCAAGAGCGTCCTAAAAGAAA 59.188 45.455 0.00 0.00 0.00 2.52
705 706 2.037251 TGAAAGAGCAAACCTAGTCGCT 59.963 45.455 0.00 0.00 37.44 4.93
858 859 2.360483 CGATGAGTGCATCTCCTACTGT 59.640 50.000 11.99 0.00 46.96 3.55
1040 1041 2.813474 CGCCCGCATTCTTCGACA 60.813 61.111 0.00 0.00 0.00 4.35
1064 1065 2.167281 ACTATGCGAGCTTGAGATGTGT 59.833 45.455 4.70 0.00 0.00 3.72
1209 1210 2.178580 GGGAAAGTCATGCCAAATCCA 58.821 47.619 0.00 0.00 0.00 3.41
1332 1334 2.447443 TGTTTGTGTTTGCAGGTACCA 58.553 42.857 15.94 0.00 0.00 3.25
1611 1644 2.025321 ACACACTCACTTTCCCCACTTT 60.025 45.455 0.00 0.00 0.00 2.66
1641 1681 7.054124 TGGGACCAGCTAGATATTTTTAACAG 58.946 38.462 0.00 0.00 0.00 3.16
1646 1686 4.478686 ACCTGGGACCAGCTAGATATTTTT 59.521 41.667 12.90 0.00 42.35 1.94
1687 1727 3.231160 GTTACTAACGGTGCATTTGTGC 58.769 45.455 0.00 0.00 0.00 4.57
1831 1954 1.373059 TGGTGCGCCATTAGTGTGA 59.627 52.632 16.89 0.00 40.46 3.58
1857 1980 6.034591 CCACTACTATATACTAATGGCGCAC 58.965 44.000 10.83 0.00 0.00 5.34
1880 2003 2.568090 CCAGAAATGTGGTGCGCC 59.432 61.111 10.11 10.11 32.32 6.53
1917 2040 3.823304 GCTAGGAAAAGGCCTATTGATGG 59.177 47.826 5.16 0.00 39.68 3.51
2634 4898 4.582869 ACAGAGCAAGAACAGATGCAATA 58.417 39.130 0.00 0.00 44.95 1.90
2855 10562 2.496871 CCTTACATTCCTGGCATGCAAA 59.503 45.455 21.36 8.21 0.00 3.68
3500 11259 8.808240 AGTGGGGATGAACTATTTAGGTATTA 57.192 34.615 0.00 0.00 0.00 0.98
3501 11260 7.707467 AGTGGGGATGAACTATTTAGGTATT 57.293 36.000 0.00 0.00 0.00 1.89
3502 11261 8.826765 CATAGTGGGGATGAACTATTTAGGTAT 58.173 37.037 0.00 0.00 37.48 2.73
3503 11262 7.236847 CCATAGTGGGGATGAACTATTTAGGTA 59.763 40.741 0.00 0.00 37.48 3.08
3504 11263 6.044404 CCATAGTGGGGATGAACTATTTAGGT 59.956 42.308 0.00 0.00 37.48 3.08
3505 11264 6.044404 ACCATAGTGGGGATGAACTATTTAGG 59.956 42.308 0.52 0.00 43.37 2.69
3507 11266 8.751215 ATACCATAGTGGGGATGAACTATTTA 57.249 34.615 0.52 0.00 43.37 1.40
3508 11267 5.994416 ACCATAGTGGGGATGAACTATTT 57.006 39.130 0.52 0.00 43.37 1.40
3509 11268 7.648177 AATACCATAGTGGGGATGAACTATT 57.352 36.000 0.52 0.00 43.37 1.73
3510 11269 7.517604 AGAAATACCATAGTGGGGATGAACTAT 59.482 37.037 0.52 0.00 43.37 2.12
3511 11270 6.849697 AGAAATACCATAGTGGGGATGAACTA 59.150 38.462 0.52 0.00 43.37 2.24
3512 11271 5.672194 AGAAATACCATAGTGGGGATGAACT 59.328 40.000 0.52 0.00 43.37 3.01
3513 11272 5.941788 AGAAATACCATAGTGGGGATGAAC 58.058 41.667 0.52 0.00 43.37 3.18
3515 11274 5.476983 AGAGAAATACCATAGTGGGGATGA 58.523 41.667 0.52 0.00 43.37 2.92
3516 11275 5.307976 TGAGAGAAATACCATAGTGGGGATG 59.692 44.000 0.52 0.00 43.37 3.51
3517 11276 5.476983 TGAGAGAAATACCATAGTGGGGAT 58.523 41.667 0.52 0.00 43.37 3.85
3518 11277 4.890988 TGAGAGAAATACCATAGTGGGGA 58.109 43.478 0.52 0.00 43.37 4.81
3519 11278 5.104527 TGTTGAGAGAAATACCATAGTGGGG 60.105 44.000 0.52 0.00 43.37 4.96
3520 11279 5.989477 TGTTGAGAGAAATACCATAGTGGG 58.011 41.667 0.52 0.00 43.37 4.61
3521 11280 6.017605 GCATGTTGAGAGAAATACCATAGTGG 60.018 42.308 0.00 0.00 45.02 4.00
3522 11281 6.539826 TGCATGTTGAGAGAAATACCATAGTG 59.460 38.462 0.00 0.00 0.00 2.74
3523 11282 6.653020 TGCATGTTGAGAGAAATACCATAGT 58.347 36.000 0.00 0.00 0.00 2.12
3524 11283 6.293298 GCTGCATGTTGAGAGAAATACCATAG 60.293 42.308 0.00 0.00 0.00 2.23
3526 11285 4.337555 GCTGCATGTTGAGAGAAATACCAT 59.662 41.667 0.00 0.00 0.00 3.55
3528 11287 3.065925 GGCTGCATGTTGAGAGAAATACC 59.934 47.826 0.50 0.00 0.00 2.73
3530 11289 4.226427 AGGCTGCATGTTGAGAGAAATA 57.774 40.909 0.50 0.00 0.00 1.40
3532 11291 2.574006 AGGCTGCATGTTGAGAGAAA 57.426 45.000 0.50 0.00 0.00 2.52
3533 11292 2.355108 GGTAGGCTGCATGTTGAGAGAA 60.355 50.000 4.64 0.00 0.00 2.87
3534 11293 1.208052 GGTAGGCTGCATGTTGAGAGA 59.792 52.381 4.64 0.00 0.00 3.10
3535 11294 1.661341 GGTAGGCTGCATGTTGAGAG 58.339 55.000 4.64 0.00 0.00 3.20
3538 11297 0.322456 GTGGGTAGGCTGCATGTTGA 60.322 55.000 4.64 0.00 0.00 3.18
3541 11300 0.107017 GATGTGGGTAGGCTGCATGT 60.107 55.000 4.64 0.00 0.00 3.21
3546 11305 0.107508 CTGGTGATGTGGGTAGGCTG 60.108 60.000 0.00 0.00 0.00 4.85
3547 11306 1.915078 GCTGGTGATGTGGGTAGGCT 61.915 60.000 0.00 0.00 0.00 4.58
3548 11307 1.452108 GCTGGTGATGTGGGTAGGC 60.452 63.158 0.00 0.00 0.00 3.93
3551 11310 0.324614 CAGTGCTGGTGATGTGGGTA 59.675 55.000 0.00 0.00 0.00 3.69
3552 11311 1.073722 CAGTGCTGGTGATGTGGGT 59.926 57.895 0.00 0.00 0.00 4.51
3553 11312 2.338015 GCAGTGCTGGTGATGTGGG 61.338 63.158 8.18 0.00 0.00 4.61
3554 11313 0.036105 TAGCAGTGCTGGTGATGTGG 60.036 55.000 27.97 0.00 41.87 4.17
3555 11314 1.081892 GTAGCAGTGCTGGTGATGTG 58.918 55.000 27.97 0.00 41.87 3.21
3556 11315 0.686789 TGTAGCAGTGCTGGTGATGT 59.313 50.000 27.97 0.68 41.87 3.06
3557 11316 1.938577 GATGTAGCAGTGCTGGTGATG 59.061 52.381 27.97 0.00 41.87 3.07
3559 11318 0.975887 TGATGTAGCAGTGCTGGTGA 59.024 50.000 27.97 4.29 41.87 4.02
3560 11319 1.366679 CTGATGTAGCAGTGCTGGTG 58.633 55.000 27.97 7.79 41.87 4.17
3561 11320 3.849002 CTGATGTAGCAGTGCTGGT 57.151 52.632 27.97 12.86 40.10 4.00
3571 11330 4.740695 GCCTCTAACTAAACGCTGATGTAG 59.259 45.833 0.00 0.00 0.00 2.74
3572 11331 4.401519 AGCCTCTAACTAAACGCTGATGTA 59.598 41.667 0.00 0.00 0.00 2.29
3574 11333 3.786635 AGCCTCTAACTAAACGCTGATG 58.213 45.455 0.00 0.00 0.00 3.07
3575 11334 4.473477 AAGCCTCTAACTAAACGCTGAT 57.527 40.909 0.00 0.00 0.00 2.90
3576 11335 3.955650 AAGCCTCTAACTAAACGCTGA 57.044 42.857 0.00 0.00 0.00 4.26
3577 11336 4.326548 GTGTAAGCCTCTAACTAAACGCTG 59.673 45.833 0.00 0.00 0.00 5.18
3578 11337 4.021719 TGTGTAAGCCTCTAACTAAACGCT 60.022 41.667 0.00 0.00 0.00 5.07
3579 11338 4.240096 TGTGTAAGCCTCTAACTAAACGC 58.760 43.478 0.00 0.00 0.00 4.84
3580 11339 6.696148 CCTATGTGTAAGCCTCTAACTAAACG 59.304 42.308 0.00 0.00 0.00 3.60
3581 11340 7.705752 GTCCTATGTGTAAGCCTCTAACTAAAC 59.294 40.741 0.00 0.00 0.00 2.01
3582 11341 7.147776 GGTCCTATGTGTAAGCCTCTAACTAAA 60.148 40.741 0.00 0.00 0.00 1.85
3584 11343 5.832060 GGTCCTATGTGTAAGCCTCTAACTA 59.168 44.000 0.00 0.00 0.00 2.24
3586 11345 4.202233 GGGTCCTATGTGTAAGCCTCTAAC 60.202 50.000 0.00 0.00 0.00 2.34
3591 11350 1.838077 GTGGGTCCTATGTGTAAGCCT 59.162 52.381 0.00 0.00 0.00 4.58
3592 11351 1.134189 GGTGGGTCCTATGTGTAAGCC 60.134 57.143 0.00 0.00 0.00 4.35
3593 11352 1.557832 TGGTGGGTCCTATGTGTAAGC 59.442 52.381 0.00 0.00 37.07 3.09
3594 11353 2.569853 TGTGGTGGGTCCTATGTGTAAG 59.430 50.000 0.00 0.00 37.07 2.34
3595 11354 2.622210 TGTGGTGGGTCCTATGTGTAA 58.378 47.619 0.00 0.00 37.07 2.41
3596 11355 2.328992 TGTGGTGGGTCCTATGTGTA 57.671 50.000 0.00 0.00 37.07 2.90
3597 11356 1.440618 TTGTGGTGGGTCCTATGTGT 58.559 50.000 0.00 0.00 37.07 3.72
3601 11360 4.086457 GTTTTCATTGTGGTGGGTCCTAT 58.914 43.478 0.00 0.00 37.07 2.57
3602 11361 3.117474 TGTTTTCATTGTGGTGGGTCCTA 60.117 43.478 0.00 0.00 37.07 2.94
3603 11362 2.316108 GTTTTCATTGTGGTGGGTCCT 58.684 47.619 0.00 0.00 37.07 3.85
3605 11364 2.545742 GCTGTTTTCATTGTGGTGGGTC 60.546 50.000 0.00 0.00 0.00 4.46
3607 11366 1.270252 GGCTGTTTTCATTGTGGTGGG 60.270 52.381 0.00 0.00 0.00 4.61
3608 11367 1.411977 TGGCTGTTTTCATTGTGGTGG 59.588 47.619 0.00 0.00 0.00 4.61
3610 11369 2.106566 TGTGGCTGTTTTCATTGTGGT 58.893 42.857 0.00 0.00 0.00 4.16
3614 11373 4.813027 AGCTAATGTGGCTGTTTTCATTG 58.187 39.130 0.00 0.00 38.73 2.82
3615 11374 5.010922 TGAAGCTAATGTGGCTGTTTTCATT 59.989 36.000 0.00 0.00 40.19 2.57
3616 11375 4.523943 TGAAGCTAATGTGGCTGTTTTCAT 59.476 37.500 0.00 0.00 40.19 2.57
3618 11377 4.022849 ACTGAAGCTAATGTGGCTGTTTTC 60.023 41.667 0.00 0.00 40.19 2.29
3619 11378 3.891366 ACTGAAGCTAATGTGGCTGTTTT 59.109 39.130 0.00 0.00 40.19 2.43
3620 11379 3.490348 ACTGAAGCTAATGTGGCTGTTT 58.510 40.909 0.00 0.00 40.19 2.83
3621 11380 3.146104 ACTGAAGCTAATGTGGCTGTT 57.854 42.857 0.00 0.00 40.19 3.16
3623 11382 4.256920 AGTAACTGAAGCTAATGTGGCTG 58.743 43.478 0.00 0.00 40.19 4.85
3624 11383 4.508662 GAGTAACTGAAGCTAATGTGGCT 58.491 43.478 0.00 0.00 42.31 4.75
3626 11385 4.872691 CAGGAGTAACTGAAGCTAATGTGG 59.127 45.833 0.00 0.00 40.97 4.17
3627 11386 4.872691 CCAGGAGTAACTGAAGCTAATGTG 59.127 45.833 0.00 0.00 40.97 3.21
3629 11388 5.091261 ACCAGGAGTAACTGAAGCTAATG 57.909 43.478 0.00 0.00 40.97 1.90
3633 11392 3.780626 ACTACCAGGAGTAACTGAAGCT 58.219 45.455 0.00 0.00 40.97 3.74
3634 11393 4.098196 CCTACTACCAGGAGTAACTGAAGC 59.902 50.000 0.00 0.00 40.97 3.86
3635 11394 5.262804 ACCTACTACCAGGAGTAACTGAAG 58.737 45.833 0.00 0.00 40.97 3.02
3636 11395 5.259632 GACCTACTACCAGGAGTAACTGAA 58.740 45.833 0.00 0.00 40.97 3.02
3637 11396 4.324874 GGACCTACTACCAGGAGTAACTGA 60.325 50.000 0.00 0.00 40.97 3.41
3639 11398 3.371380 CGGACCTACTACCAGGAGTAACT 60.371 52.174 0.00 0.00 39.18 2.24
3640 11399 2.948315 CGGACCTACTACCAGGAGTAAC 59.052 54.545 0.00 0.00 39.18 2.50
3641 11400 2.846206 TCGGACCTACTACCAGGAGTAA 59.154 50.000 0.00 0.00 39.18 2.24
3642 11401 2.171448 GTCGGACCTACTACCAGGAGTA 59.829 54.545 0.00 0.00 39.18 2.59
3643 11402 1.064832 GTCGGACCTACTACCAGGAGT 60.065 57.143 0.00 0.00 39.18 3.85
3644 11403 1.212441 AGTCGGACCTACTACCAGGAG 59.788 57.143 4.14 0.00 39.18 3.69
3646 11405 2.437281 TCTAGTCGGACCTACTACCAGG 59.563 54.545 4.14 0.00 41.87 4.45
3649 11408 3.244181 CCTCTCTAGTCGGACCTACTACC 60.244 56.522 4.14 0.00 0.00 3.18
3650 11409 3.803368 GCCTCTCTAGTCGGACCTACTAC 60.803 56.522 4.14 0.00 0.00 2.73
3652 11411 1.141455 GCCTCTCTAGTCGGACCTACT 59.859 57.143 4.14 3.84 0.00 2.57
3653 11412 1.141455 AGCCTCTCTAGTCGGACCTAC 59.859 57.143 4.14 0.00 0.00 3.18
3654 11413 1.141254 CAGCCTCTCTAGTCGGACCTA 59.859 57.143 4.14 0.00 0.00 3.08
3655 11414 0.106918 CAGCCTCTCTAGTCGGACCT 60.107 60.000 4.14 0.00 0.00 3.85
3656 11415 0.107116 TCAGCCTCTCTAGTCGGACC 60.107 60.000 4.14 0.00 0.00 4.46
3657 11416 1.018910 GTCAGCCTCTCTAGTCGGAC 58.981 60.000 0.00 0.00 0.00 4.79
3658 11417 0.107116 GGTCAGCCTCTCTAGTCGGA 60.107 60.000 0.00 0.00 0.00 4.55
3659 11418 0.394488 TGGTCAGCCTCTCTAGTCGG 60.394 60.000 0.00 0.00 35.27 4.79
3660 11419 0.736053 GTGGTCAGCCTCTCTAGTCG 59.264 60.000 0.00 0.00 35.27 4.18
3661 11420 0.736053 CGTGGTCAGCCTCTCTAGTC 59.264 60.000 0.00 0.00 35.27 2.59
3662 11421 0.038455 ACGTGGTCAGCCTCTCTAGT 59.962 55.000 0.00 0.00 35.27 2.57
3663 11422 1.671845 GTACGTGGTCAGCCTCTCTAG 59.328 57.143 0.00 0.00 35.27 2.43
3664 11423 1.747709 GTACGTGGTCAGCCTCTCTA 58.252 55.000 0.00 0.00 35.27 2.43
3665 11424 1.306642 CGTACGTGGTCAGCCTCTCT 61.307 60.000 7.22 0.00 35.27 3.10
3666 11425 1.136984 CGTACGTGGTCAGCCTCTC 59.863 63.158 7.22 0.00 35.27 3.20
3667 11426 1.584380 GACGTACGTGGTCAGCCTCT 61.584 60.000 28.16 0.00 34.56 3.69
3668 11427 1.154073 GACGTACGTGGTCAGCCTC 60.154 63.158 28.16 3.68 34.56 4.70
3669 11428 1.584380 GAGACGTACGTGGTCAGCCT 61.584 60.000 28.16 14.57 36.87 4.58
3670 11429 1.154073 GAGACGTACGTGGTCAGCC 60.154 63.158 28.16 9.39 36.87 4.85
3671 11430 0.240411 AAGAGACGTACGTGGTCAGC 59.760 55.000 28.16 10.19 36.87 4.26
3672 11431 2.582687 GAAAGAGACGTACGTGGTCAG 58.417 52.381 28.16 0.00 36.87 3.51
3673 11432 1.267806 GGAAAGAGACGTACGTGGTCA 59.732 52.381 28.16 0.00 36.87 4.02
3674 11433 1.538950 AGGAAAGAGACGTACGTGGTC 59.461 52.381 28.16 21.00 34.62 4.02
3675 11434 1.613836 AGGAAAGAGACGTACGTGGT 58.386 50.000 28.16 13.00 0.00 4.16
3676 11435 2.719426 AAGGAAAGAGACGTACGTGG 57.281 50.000 28.16 0.00 0.00 4.94
3677 11436 4.046462 TGAAAAGGAAAGAGACGTACGTG 58.954 43.478 28.16 0.00 0.00 4.49
3678 11437 4.311816 TGAAAAGGAAAGAGACGTACGT 57.688 40.909 23.04 23.04 0.00 3.57
3679 11438 5.646467 TTTGAAAAGGAAAGAGACGTACG 57.354 39.130 15.01 15.01 0.00 3.67
3700 11459 5.240844 AGGCGCTAGTCACATTAAAGTTTTT 59.759 36.000 7.64 0.00 0.00 1.94
3701 11460 4.760204 AGGCGCTAGTCACATTAAAGTTTT 59.240 37.500 7.64 0.00 0.00 2.43
3702 11461 4.324267 AGGCGCTAGTCACATTAAAGTTT 58.676 39.130 7.64 0.00 0.00 2.66
3703 11462 3.933332 GAGGCGCTAGTCACATTAAAGTT 59.067 43.478 7.64 0.00 0.00 2.66
3704 11463 3.056107 TGAGGCGCTAGTCACATTAAAGT 60.056 43.478 7.64 0.00 0.00 2.66
3705 11464 3.307242 GTGAGGCGCTAGTCACATTAAAG 59.693 47.826 23.98 0.00 42.31 1.85
3706 11465 3.259064 GTGAGGCGCTAGTCACATTAAA 58.741 45.455 23.98 0.00 42.31 1.52
3707 11466 2.418197 GGTGAGGCGCTAGTCACATTAA 60.418 50.000 27.43 0.29 44.17 1.40
3708 11467 1.136305 GGTGAGGCGCTAGTCACATTA 59.864 52.381 27.43 0.86 44.17 1.90
3709 11468 0.108138 GGTGAGGCGCTAGTCACATT 60.108 55.000 27.43 0.00 44.17 2.71
3710 11469 1.257750 TGGTGAGGCGCTAGTCACAT 61.258 55.000 27.43 0.92 44.17 3.21
3711 11470 1.468506 TTGGTGAGGCGCTAGTCACA 61.469 55.000 27.43 16.82 44.17 3.58
3712 11471 0.108138 ATTGGTGAGGCGCTAGTCAC 60.108 55.000 22.06 22.06 42.06 3.67
3713 11472 0.613260 AATTGGTGAGGCGCTAGTCA 59.387 50.000 7.64 5.37 0.00 3.41
3714 11473 1.291132 GAATTGGTGAGGCGCTAGTC 58.709 55.000 7.64 2.35 0.00 2.59
3715 11474 0.107654 GGAATTGGTGAGGCGCTAGT 60.108 55.000 7.64 0.00 0.00 2.57
3716 11475 0.815615 GGGAATTGGTGAGGCGCTAG 60.816 60.000 7.64 0.00 0.00 3.42
3717 11476 1.223487 GGGAATTGGTGAGGCGCTA 59.777 57.895 7.64 0.00 0.00 4.26
3718 11477 2.044946 GGGAATTGGTGAGGCGCT 60.045 61.111 7.64 0.00 0.00 5.92
3719 11478 3.140814 GGGGAATTGGTGAGGCGC 61.141 66.667 0.00 0.00 0.00 6.53
3720 11479 2.046285 GTGGGGAATTGGTGAGGCG 61.046 63.158 0.00 0.00 0.00 5.52
3721 11480 1.682344 GGTGGGGAATTGGTGAGGC 60.682 63.158 0.00 0.00 0.00 4.70
3722 11481 1.000359 GGGTGGGGAATTGGTGAGG 60.000 63.158 0.00 0.00 0.00 3.86
3723 11482 0.323725 CTGGGTGGGGAATTGGTGAG 60.324 60.000 0.00 0.00 0.00 3.51
3724 11483 1.773635 CTGGGTGGGGAATTGGTGA 59.226 57.895 0.00 0.00 0.00 4.02
3725 11484 1.984026 GCTGGGTGGGGAATTGGTG 60.984 63.158 0.00 0.00 0.00 4.17
3726 11485 2.445155 GCTGGGTGGGGAATTGGT 59.555 61.111 0.00 0.00 0.00 3.67
3727 11486 2.755469 CGCTGGGTGGGGAATTGG 60.755 66.667 0.00 0.00 0.00 3.16
3734 11493 4.096003 ACGAATCCGCTGGGTGGG 62.096 66.667 0.00 0.00 39.95 4.61
3735 11494 2.511600 GACGAATCCGCTGGGTGG 60.512 66.667 0.00 0.00 39.95 4.61
3736 11495 1.519455 GAGACGAATCCGCTGGGTG 60.519 63.158 0.00 0.00 39.95 4.61
3737 11496 2.722201 GGAGACGAATCCGCTGGGT 61.722 63.158 0.00 0.00 39.95 4.51
3738 11497 2.107141 GGAGACGAATCCGCTGGG 59.893 66.667 0.00 0.00 39.95 4.45
3739 11498 1.107538 TAGGGAGACGAATCCGCTGG 61.108 60.000 0.00 0.00 40.56 4.85
3740 11499 0.962489 ATAGGGAGACGAATCCGCTG 59.038 55.000 0.00 0.00 40.56 5.18
3741 11500 1.614413 GAATAGGGAGACGAATCCGCT 59.386 52.381 0.00 0.00 40.56 5.52
3742 11501 1.340248 TGAATAGGGAGACGAATCCGC 59.660 52.381 0.00 0.00 40.56 5.54
3743 11502 3.508012 AGATGAATAGGGAGACGAATCCG 59.492 47.826 0.00 0.00 40.56 4.18
3744 11503 5.245075 AGAAGATGAATAGGGAGACGAATCC 59.755 44.000 0.00 0.00 38.76 3.01
3745 11504 6.339587 AGAAGATGAATAGGGAGACGAATC 57.660 41.667 0.00 0.00 0.00 2.52
3746 11505 5.245075 GGAGAAGATGAATAGGGAGACGAAT 59.755 44.000 0.00 0.00 0.00 3.34
3747 11506 4.585162 GGAGAAGATGAATAGGGAGACGAA 59.415 45.833 0.00 0.00 0.00 3.85
3748 11507 4.145807 GGAGAAGATGAATAGGGAGACGA 58.854 47.826 0.00 0.00 0.00 4.20
3749 11508 3.891977 TGGAGAAGATGAATAGGGAGACG 59.108 47.826 0.00 0.00 0.00 4.18
3750 11509 5.878406 TTGGAGAAGATGAATAGGGAGAC 57.122 43.478 0.00 0.00 0.00 3.36
3751 11510 6.388814 AGATTGGAGAAGATGAATAGGGAGA 58.611 40.000 0.00 0.00 0.00 3.71
3752 11511 6.295802 GGAGATTGGAGAAGATGAATAGGGAG 60.296 46.154 0.00 0.00 0.00 4.30
3753 11512 5.545723 GGAGATTGGAGAAGATGAATAGGGA 59.454 44.000 0.00 0.00 0.00 4.20
3754 11513 5.309020 TGGAGATTGGAGAAGATGAATAGGG 59.691 44.000 0.00 0.00 0.00 3.53
3755 11514 6.430962 TGGAGATTGGAGAAGATGAATAGG 57.569 41.667 0.00 0.00 0.00 2.57
3756 11515 7.677892 TGATGGAGATTGGAGAAGATGAATAG 58.322 38.462 0.00 0.00 0.00 1.73
3757 11516 7.622502 TGATGGAGATTGGAGAAGATGAATA 57.377 36.000 0.00 0.00 0.00 1.75
3758 11517 6.511017 TGATGGAGATTGGAGAAGATGAAT 57.489 37.500 0.00 0.00 0.00 2.57
3759 11518 5.963214 TGATGGAGATTGGAGAAGATGAA 57.037 39.130 0.00 0.00 0.00 2.57
3760 11519 5.963214 TTGATGGAGATTGGAGAAGATGA 57.037 39.130 0.00 0.00 0.00 2.92
3761 11520 6.207025 GGATTTGATGGAGATTGGAGAAGATG 59.793 42.308 0.00 0.00 0.00 2.90
3762 11521 6.305411 GGATTTGATGGAGATTGGAGAAGAT 58.695 40.000 0.00 0.00 0.00 2.40
3763 11522 5.398353 GGGATTTGATGGAGATTGGAGAAGA 60.398 44.000 0.00 0.00 0.00 2.87
3764 11523 4.826183 GGGATTTGATGGAGATTGGAGAAG 59.174 45.833 0.00 0.00 0.00 2.85
3765 11524 4.230272 TGGGATTTGATGGAGATTGGAGAA 59.770 41.667 0.00 0.00 0.00 2.87
3766 11525 3.787577 TGGGATTTGATGGAGATTGGAGA 59.212 43.478 0.00 0.00 0.00 3.71
3767 11526 3.887716 GTGGGATTTGATGGAGATTGGAG 59.112 47.826 0.00 0.00 0.00 3.86
3768 11527 3.528905 AGTGGGATTTGATGGAGATTGGA 59.471 43.478 0.00 0.00 0.00 3.53
3769 11528 3.907221 AGTGGGATTTGATGGAGATTGG 58.093 45.455 0.00 0.00 0.00 3.16
3770 11529 7.226441 TGTATAGTGGGATTTGATGGAGATTG 58.774 38.462 0.00 0.00 0.00 2.67
3771 11530 7.392766 TGTATAGTGGGATTTGATGGAGATT 57.607 36.000 0.00 0.00 0.00 2.40
3772 11531 7.392766 TTGTATAGTGGGATTTGATGGAGAT 57.607 36.000 0.00 0.00 0.00 2.75
3773 11532 6.823286 TTGTATAGTGGGATTTGATGGAGA 57.177 37.500 0.00 0.00 0.00 3.71
3774 11533 9.003658 GTAATTGTATAGTGGGATTTGATGGAG 57.996 37.037 0.00 0.00 0.00 3.86
3775 11534 8.723365 AGTAATTGTATAGTGGGATTTGATGGA 58.277 33.333 0.00 0.00 0.00 3.41
3776 11535 8.924511 AGTAATTGTATAGTGGGATTTGATGG 57.075 34.615 0.00 0.00 0.00 3.51
3777 11536 9.003658 GGAGTAATTGTATAGTGGGATTTGATG 57.996 37.037 0.00 0.00 0.00 3.07
3778 11537 8.723365 TGGAGTAATTGTATAGTGGGATTTGAT 58.277 33.333 0.00 0.00 0.00 2.57
3779 11538 8.096621 TGGAGTAATTGTATAGTGGGATTTGA 57.903 34.615 0.00 0.00 0.00 2.69
3780 11539 8.924511 ATGGAGTAATTGTATAGTGGGATTTG 57.075 34.615 0.00 0.00 0.00 2.32
3781 11540 7.878127 CGATGGAGTAATTGTATAGTGGGATTT 59.122 37.037 0.00 0.00 0.00 2.17
3782 11541 7.234782 TCGATGGAGTAATTGTATAGTGGGATT 59.765 37.037 0.00 0.00 0.00 3.01
3783 11542 6.724441 TCGATGGAGTAATTGTATAGTGGGAT 59.276 38.462 0.00 0.00 0.00 3.85
3784 11543 6.072649 TCGATGGAGTAATTGTATAGTGGGA 58.927 40.000 0.00 0.00 0.00 4.37
3785 11544 6.340962 TCGATGGAGTAATTGTATAGTGGG 57.659 41.667 0.00 0.00 0.00 4.61
3786 11545 8.088365 TGAATCGATGGAGTAATTGTATAGTGG 58.912 37.037 0.00 0.00 0.00 4.00
3787 11546 9.133627 CTGAATCGATGGAGTAATTGTATAGTG 57.866 37.037 0.00 0.00 0.00 2.74
3788 11547 8.861086 ACTGAATCGATGGAGTAATTGTATAGT 58.139 33.333 0.00 0.00 0.00 2.12
3793 11552 5.065218 GCAACTGAATCGATGGAGTAATTGT 59.935 40.000 0.00 0.00 0.00 2.71
3794 11553 5.295292 AGCAACTGAATCGATGGAGTAATTG 59.705 40.000 0.00 1.24 0.00 2.32
3798 11557 3.701542 AGAGCAACTGAATCGATGGAGTA 59.298 43.478 0.00 0.00 0.00 2.59
3800 11559 3.176552 AGAGCAACTGAATCGATGGAG 57.823 47.619 0.00 0.00 0.00 3.86
3802 11561 3.557595 GGTAAGAGCAACTGAATCGATGG 59.442 47.826 0.00 0.00 0.00 3.51
3804 11563 4.471904 TGGTAAGAGCAACTGAATCGAT 57.528 40.909 0.00 0.00 0.00 3.59
3806 11565 4.269603 CAGATGGTAAGAGCAACTGAATCG 59.730 45.833 9.54 0.00 45.50 3.34
3809 11568 3.942829 CCAGATGGTAAGAGCAACTGAA 58.057 45.455 15.03 0.00 45.50 3.02
3810 11569 3.616956 CCAGATGGTAAGAGCAACTGA 57.383 47.619 15.03 0.00 45.50 3.41
3823 11582 3.322254 GCCCGGAGATATATACCAGATGG 59.678 52.174 0.73 0.00 42.17 3.51
3825 11584 3.577919 GGCCCGGAGATATATACCAGAT 58.422 50.000 0.73 0.00 0.00 2.90
3826 11585 2.685819 CGGCCCGGAGATATATACCAGA 60.686 54.545 0.73 0.00 0.00 3.86
3827 11586 1.681793 CGGCCCGGAGATATATACCAG 59.318 57.143 0.73 0.00 0.00 4.00
3829 11588 0.388294 GCGGCCCGGAGATATATACC 59.612 60.000 4.77 0.00 0.00 2.73
3831 11590 1.686587 CATGCGGCCCGGAGATATATA 59.313 52.381 4.77 0.00 0.00 0.86
3834 11593 2.665000 CATGCGGCCCGGAGATAT 59.335 61.111 4.77 0.00 0.00 1.63
3841 11600 4.910722 CAAATCGCATGCGGCCCG 62.911 66.667 37.18 20.80 40.31 6.13
3842 11601 4.573950 CCAAATCGCATGCGGCCC 62.574 66.667 37.18 0.00 40.31 5.80
3844 11603 3.986030 TTGCCAAATCGCATGCGGC 62.986 57.895 37.18 30.54 43.28 6.53
3846 11605 1.874915 CCTTGCCAAATCGCATGCG 60.875 57.895 33.61 33.61 38.87 4.73
3847 11606 0.455410 TACCTTGCCAAATCGCATGC 59.545 50.000 7.91 7.91 38.87 4.06
3848 11607 4.478699 CATATACCTTGCCAAATCGCATG 58.521 43.478 0.00 0.00 38.87 4.06
3849 11608 3.057315 GCATATACCTTGCCAAATCGCAT 60.057 43.478 0.00 0.00 38.87 4.73
3853 11612 4.379813 CCATCGCATATACCTTGCCAAATC 60.380 45.833 0.00 0.00 36.75 2.17
3854 11613 3.507233 CCATCGCATATACCTTGCCAAAT 59.493 43.478 0.00 0.00 36.75 2.32
3856 11615 2.503331 CCATCGCATATACCTTGCCAA 58.497 47.619 0.00 0.00 36.75 4.52
3857 11616 1.881925 GCCATCGCATATACCTTGCCA 60.882 52.381 0.00 0.00 36.75 4.92
3858 11617 0.804989 GCCATCGCATATACCTTGCC 59.195 55.000 0.00 0.00 36.75 4.52
3860 11619 1.078709 CCGCCATCGCATATACCTTG 58.921 55.000 0.00 0.00 34.03 3.61
3861 11620 0.685097 ACCGCCATCGCATATACCTT 59.315 50.000 0.00 0.00 34.03 3.50
3863 11622 0.037697 TGACCGCCATCGCATATACC 60.038 55.000 0.00 0.00 34.03 2.73
3864 11623 1.927174 GATGACCGCCATCGCATATAC 59.073 52.381 1.21 0.00 41.88 1.47
3866 11625 3.143675 GATGACCGCCATCGCATAT 57.856 52.632 1.21 0.00 41.88 1.78
3867 11626 4.673403 GATGACCGCCATCGCATA 57.327 55.556 1.21 0.00 41.88 3.14
3876 11635 2.514824 GCAAGGAGGGATGACCGC 60.515 66.667 0.00 0.00 46.96 5.68
3877 11636 2.032860 ATCGCAAGGAGGGATGACCG 62.033 60.000 0.00 0.00 46.89 4.79
3878 11637 1.832912 ATCGCAAGGAGGGATGACC 59.167 57.895 0.00 0.00 46.89 4.02
3883 11642 1.043816 GATCTCATCGCAAGGAGGGA 58.956 55.000 0.00 0.00 43.93 4.20
3884 11643 0.034616 GGATCTCATCGCAAGGAGGG 59.965 60.000 0.00 0.00 38.47 4.30
3886 11645 0.387202 ACGGATCTCATCGCAAGGAG 59.613 55.000 0.00 0.00 38.47 3.69
3889 11648 1.932604 GCCTACGGATCTCATCGCAAG 60.933 57.143 0.00 0.00 0.00 4.01
3891 11650 1.660355 GCCTACGGATCTCATCGCA 59.340 57.895 0.00 0.00 0.00 5.10
3893 11652 4.849336 CGCCTACGGATCTCATCG 57.151 61.111 0.00 0.00 34.97 3.84


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.