Multiple sequence alignment - TraesCS1A01G008400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G008400 chr1A 100.000 3076 0 0 1 3076 4803373 4806448 0.000000e+00 5681.0
1 TraesCS1A01G008400 chr1A 83.784 111 13 4 654 760 582560830 582560939 1.950000e-17 100.0
2 TraesCS1A01G008400 chr1B 91.716 1678 86 23 762 2434 33009892 33008263 0.000000e+00 2279.0
3 TraesCS1A01G008400 chr1B 78.369 601 112 12 163 757 667722995 667723583 1.040000e-99 374.0
4 TraesCS1A01G008400 chr4A 92.647 612 44 1 2431 3042 625971162 625971772 0.000000e+00 880.0
5 TraesCS1A01G008400 chr4A 90.952 641 54 3 2434 3073 103345140 103344503 0.000000e+00 859.0
6 TraesCS1A01G008400 chr2A 91.108 641 52 3 2434 3074 55940919 55940284 0.000000e+00 863.0
7 TraesCS1A01G008400 chr2A 90.388 645 58 2 2432 3074 710391695 710391053 0.000000e+00 845.0
8 TraesCS1A01G008400 chr2A 90.358 643 60 2 2432 3074 104297966 104297326 0.000000e+00 843.0
9 TraesCS1A01G008400 chr2A 90.358 643 56 5 2432 3074 765833139 765833775 0.000000e+00 839.0
10 TraesCS1A01G008400 chr2A 79.692 389 61 13 381 763 677778415 677778039 6.540000e-67 265.0
11 TraesCS1A01G008400 chr2A 99.315 146 1 0 1 146 707208178 707208323 6.540000e-67 265.0
12 TraesCS1A01G008400 chr5A 90.328 641 56 5 2434 3074 690782271 690781637 0.000000e+00 835.0
13 TraesCS1A01G008400 chr2D 89.441 644 56 8 2431 3071 548611057 548611691 0.000000e+00 802.0
14 TraesCS1A01G008400 chr5D 88.584 657 61 10 2426 3076 486840159 486839511 0.000000e+00 785.0
15 TraesCS1A01G008400 chr5D 77.980 604 116 11 163 760 303831461 303832053 2.250000e-96 363.0
16 TraesCS1A01G008400 chr5D 97.945 146 3 0 1 146 138476417 138476272 1.420000e-63 254.0
17 TraesCS1A01G008400 chr5D 97.945 146 3 0 1 146 387601958 387601813 1.420000e-63 254.0
18 TraesCS1A01G008400 chr7B 78.167 600 115 9 163 757 448656096 448656684 4.850000e-98 368.0
19 TraesCS1A01G008400 chr7B 77.907 602 114 13 163 757 508202627 508203216 1.050000e-94 357.0
20 TraesCS1A01G008400 chr7D 77.980 604 116 9 163 760 418951655 418952247 2.250000e-96 363.0
21 TraesCS1A01G008400 chr7D 77.815 604 117 9 166 763 562127590 562126998 1.050000e-94 357.0
22 TraesCS1A01G008400 chr7D 77.649 604 118 11 163 760 491880000 491880592 4.880000e-93 351.0
23 TraesCS1A01G008400 chr7D 98.630 146 2 0 1 146 136691889 136691744 3.040000e-65 259.0
24 TraesCS1A01G008400 chr7A 77.980 604 115 12 166 763 664239392 664238801 2.250000e-96 363.0
25 TraesCS1A01G008400 chr7A 85.981 107 12 3 2327 2431 10222108 10222213 9.020000e-21 111.0
26 TraesCS1A01G008400 chr6B 77.980 604 116 11 163 760 704877223 704877815 2.250000e-96 363.0
27 TraesCS1A01G008400 chr6B 77.870 601 116 11 163 757 697467288 697467877 1.050000e-94 357.0
28 TraesCS1A01G008400 chr2B 77.980 604 116 9 166 763 547062454 547061862 2.250000e-96 363.0
29 TraesCS1A01G008400 chr2B 77.649 604 118 11 166 763 632591176 632590584 4.880000e-93 351.0
30 TraesCS1A01G008400 chr6D 77.649 604 118 11 163 760 420728172 420728764 4.880000e-93 351.0
31 TraesCS1A01G008400 chr6D 97.945 146 3 0 1 146 68858769 68858624 1.420000e-63 254.0
32 TraesCS1A01G008400 chr6D 97.945 146 3 0 1 146 411184469 411184614 1.420000e-63 254.0
33 TraesCS1A01G008400 chr3A 77.521 605 115 11 167 763 646509548 646508957 8.170000e-91 344.0
34 TraesCS1A01G008400 chr3D 78.984 433 79 6 334 763 330225961 330226384 5.020000e-73 285.0
35 TraesCS1A01G008400 chr3D 86.792 106 13 1 2327 2431 29810209 29810314 1.940000e-22 117.0
36 TraesCS1A01G008400 chr4D 97.945 146 3 0 1 146 499686379 499686524 1.420000e-63 254.0
37 TraesCS1A01G008400 chr1D 97.945 146 3 0 1 146 59512334 59512189 1.420000e-63 254.0
38 TraesCS1A01G008400 chr1D 97.945 146 3 0 1 146 110772058 110772203 1.420000e-63 254.0
39 TraesCS1A01G008400 chr1D 86.458 96 13 0 2336 2431 276770076 276770171 4.190000e-19 106.0
40 TraesCS1A01G008400 chr1D 84.685 111 12 4 654 760 485326652 485326761 4.190000e-19 106.0
41 TraesCS1A01G008400 chr4B 87.736 106 12 1 2327 2431 28632998 28633103 4.170000e-24 122.0
42 TraesCS1A01G008400 chr5B 87.037 108 13 1 2327 2434 666382008 666381902 1.500000e-23 121.0
43 TraesCS1A01G008400 chr5B 87.500 96 11 1 2337 2431 619152267 619152362 3.240000e-20 110.0
44 TraesCS1A01G008400 chr5B 87.500 96 11 1 2337 2431 619205600 619205695 3.240000e-20 110.0
45 TraesCS1A01G008400 chr5B 84.375 96 14 1 2337 2431 619275169 619275264 3.270000e-15 93.5
46 TraesCS1A01G008400 chr6A 84.112 107 17 0 2327 2433 541598830 541598936 1.510000e-18 104.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G008400 chr1A 4803373 4806448 3075 False 5681 5681 100.000 1 3076 1 chr1A.!!$F1 3075
1 TraesCS1A01G008400 chr1B 33008263 33009892 1629 True 2279 2279 91.716 762 2434 1 chr1B.!!$R1 1672
2 TraesCS1A01G008400 chr1B 667722995 667723583 588 False 374 374 78.369 163 757 1 chr1B.!!$F1 594
3 TraesCS1A01G008400 chr4A 625971162 625971772 610 False 880 880 92.647 2431 3042 1 chr4A.!!$F1 611
4 TraesCS1A01G008400 chr4A 103344503 103345140 637 True 859 859 90.952 2434 3073 1 chr4A.!!$R1 639
5 TraesCS1A01G008400 chr2A 55940284 55940919 635 True 863 863 91.108 2434 3074 1 chr2A.!!$R1 640
6 TraesCS1A01G008400 chr2A 710391053 710391695 642 True 845 845 90.388 2432 3074 1 chr2A.!!$R4 642
7 TraesCS1A01G008400 chr2A 104297326 104297966 640 True 843 843 90.358 2432 3074 1 chr2A.!!$R2 642
8 TraesCS1A01G008400 chr2A 765833139 765833775 636 False 839 839 90.358 2432 3074 1 chr2A.!!$F2 642
9 TraesCS1A01G008400 chr5A 690781637 690782271 634 True 835 835 90.328 2434 3074 1 chr5A.!!$R1 640
10 TraesCS1A01G008400 chr2D 548611057 548611691 634 False 802 802 89.441 2431 3071 1 chr2D.!!$F1 640
11 TraesCS1A01G008400 chr5D 486839511 486840159 648 True 785 785 88.584 2426 3076 1 chr5D.!!$R3 650
12 TraesCS1A01G008400 chr5D 303831461 303832053 592 False 363 363 77.980 163 760 1 chr5D.!!$F1 597
13 TraesCS1A01G008400 chr7B 448656096 448656684 588 False 368 368 78.167 163 757 1 chr7B.!!$F1 594
14 TraesCS1A01G008400 chr7B 508202627 508203216 589 False 357 357 77.907 163 757 1 chr7B.!!$F2 594
15 TraesCS1A01G008400 chr7D 418951655 418952247 592 False 363 363 77.980 163 760 1 chr7D.!!$F1 597
16 TraesCS1A01G008400 chr7D 562126998 562127590 592 True 357 357 77.815 166 763 1 chr7D.!!$R2 597
17 TraesCS1A01G008400 chr7D 491880000 491880592 592 False 351 351 77.649 163 760 1 chr7D.!!$F2 597
18 TraesCS1A01G008400 chr7A 664238801 664239392 591 True 363 363 77.980 166 763 1 chr7A.!!$R1 597
19 TraesCS1A01G008400 chr6B 704877223 704877815 592 False 363 363 77.980 163 760 1 chr6B.!!$F2 597
20 TraesCS1A01G008400 chr6B 697467288 697467877 589 False 357 357 77.870 163 757 1 chr6B.!!$F1 594
21 TraesCS1A01G008400 chr2B 547061862 547062454 592 True 363 363 77.980 166 763 1 chr2B.!!$R1 597
22 TraesCS1A01G008400 chr2B 632590584 632591176 592 True 351 351 77.649 166 763 1 chr2B.!!$R2 597
23 TraesCS1A01G008400 chr6D 420728172 420728764 592 False 351 351 77.649 163 760 1 chr6D.!!$F2 597
24 TraesCS1A01G008400 chr3A 646508957 646509548 591 True 344 344 77.521 167 763 1 chr3A.!!$R1 596

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
147 148 0.104304 CGCCACGGCCTCTAGTATTT 59.896 55.0 0.0 0.00 37.98 1.40 F
1329 1340 0.179119 GGTACTGGCGCGACTACATT 60.179 55.0 15.8 0.97 0.00 2.71 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1803 1814 0.031449 TTCGTCACGATCTGCACACA 59.969 50.000 0.0 0.0 35.23 3.72 R
2665 2681 1.146263 GGCGTTCGGGGAAGATGAT 59.854 57.895 0.0 0.0 0.00 2.45 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
19 20 2.271944 GTAAAGTTCACTGGTGGGCT 57.728 50.000 0.70 0.00 0.00 5.19
20 21 1.880027 GTAAAGTTCACTGGTGGGCTG 59.120 52.381 0.70 0.00 0.00 4.85
21 22 0.258774 AAAGTTCACTGGTGGGCTGT 59.741 50.000 0.70 0.00 0.00 4.40
22 23 0.258774 AAGTTCACTGGTGGGCTGTT 59.741 50.000 0.70 0.00 0.00 3.16
23 24 0.466189 AGTTCACTGGTGGGCTGTTG 60.466 55.000 0.70 0.00 0.00 3.33
24 25 1.827789 TTCACTGGTGGGCTGTTGC 60.828 57.895 0.70 0.00 38.76 4.17
41 42 2.268920 CCTTCGGCAAGCCTAGCA 59.731 61.111 9.73 0.00 0.00 3.49
42 43 1.377202 CCTTCGGCAAGCCTAGCAA 60.377 57.895 9.73 0.00 0.00 3.91
43 44 0.960364 CCTTCGGCAAGCCTAGCAAA 60.960 55.000 9.73 0.00 0.00 3.68
44 45 0.169009 CTTCGGCAAGCCTAGCAAAC 59.831 55.000 9.73 0.00 0.00 2.93
45 46 0.536233 TTCGGCAAGCCTAGCAAACA 60.536 50.000 9.73 0.00 0.00 2.83
46 47 1.210155 CGGCAAGCCTAGCAAACAC 59.790 57.895 9.73 0.00 0.00 3.32
47 48 1.586541 GGCAAGCCTAGCAAACACC 59.413 57.895 3.29 0.00 0.00 4.16
48 49 1.210155 GCAAGCCTAGCAAACACCG 59.790 57.895 0.00 0.00 0.00 4.94
49 50 1.234615 GCAAGCCTAGCAAACACCGA 61.235 55.000 0.00 0.00 0.00 4.69
50 51 0.517316 CAAGCCTAGCAAACACCGAC 59.483 55.000 0.00 0.00 0.00 4.79
51 52 0.949105 AAGCCTAGCAAACACCGACG 60.949 55.000 0.00 0.00 0.00 5.12
52 53 1.373748 GCCTAGCAAACACCGACGA 60.374 57.895 0.00 0.00 0.00 4.20
53 54 1.352156 GCCTAGCAAACACCGACGAG 61.352 60.000 0.00 0.00 0.00 4.18
54 55 1.352156 CCTAGCAAACACCGACGAGC 61.352 60.000 0.00 0.00 0.00 5.03
55 56 1.674611 CTAGCAAACACCGACGAGCG 61.675 60.000 0.00 0.00 40.47 5.03
56 57 4.719616 GCAAACACCGACGAGCGC 62.720 66.667 0.00 0.00 39.11 5.92
57 58 3.036084 CAAACACCGACGAGCGCT 61.036 61.111 11.27 11.27 39.11 5.92
58 59 3.036084 AAACACCGACGAGCGCTG 61.036 61.111 18.48 10.31 39.11 5.18
59 60 3.493830 AAACACCGACGAGCGCTGA 62.494 57.895 18.48 0.00 39.11 4.26
60 61 2.964438 AAACACCGACGAGCGCTGAA 62.964 55.000 18.48 0.00 39.11 3.02
61 62 3.175240 CACCGACGAGCGCTGAAG 61.175 66.667 18.48 8.85 39.11 3.02
64 65 3.832171 CGACGAGCGCTGAAGCAC 61.832 66.667 18.48 0.00 42.21 4.40
67 68 3.406361 CGAGCGCTGAAGCACGTT 61.406 61.111 18.48 0.00 44.03 3.99
68 69 2.171940 GAGCGCTGAAGCACGTTG 59.828 61.111 18.48 0.00 42.21 4.10
69 70 2.280119 AGCGCTGAAGCACGTTGA 60.280 55.556 10.39 0.00 42.21 3.18
70 71 1.630244 GAGCGCTGAAGCACGTTGAT 61.630 55.000 18.48 0.00 42.21 2.57
71 72 0.389817 AGCGCTGAAGCACGTTGATA 60.390 50.000 10.39 0.00 42.21 2.15
72 73 0.652592 GCGCTGAAGCACGTTGATAT 59.347 50.000 0.00 0.00 42.21 1.63
73 74 1.332377 GCGCTGAAGCACGTTGATATC 60.332 52.381 0.00 0.00 42.21 1.63
74 75 1.926510 CGCTGAAGCACGTTGATATCA 59.073 47.619 0.00 0.00 42.21 2.15
75 76 2.541346 CGCTGAAGCACGTTGATATCAT 59.459 45.455 6.17 0.00 42.21 2.45
76 77 3.001634 CGCTGAAGCACGTTGATATCATT 59.998 43.478 6.17 0.00 42.21 2.57
77 78 4.277258 GCTGAAGCACGTTGATATCATTG 58.723 43.478 6.17 4.76 41.59 2.82
78 79 4.201851 GCTGAAGCACGTTGATATCATTGT 60.202 41.667 6.17 5.42 41.59 2.71
79 80 5.006649 GCTGAAGCACGTTGATATCATTGTA 59.993 40.000 6.17 0.00 41.59 2.41
80 81 6.293081 GCTGAAGCACGTTGATATCATTGTAT 60.293 38.462 6.17 0.00 41.59 2.29
81 82 6.947258 TGAAGCACGTTGATATCATTGTATG 58.053 36.000 6.17 0.00 0.00 2.39
82 83 6.760770 TGAAGCACGTTGATATCATTGTATGA 59.239 34.615 6.17 0.00 44.55 2.15
84 85 7.356641 AGCACGTTGATATCATTGTATGATC 57.643 36.000 6.17 0.00 46.62 2.92
85 86 6.369890 AGCACGTTGATATCATTGTATGATCC 59.630 38.462 6.17 1.51 46.62 3.36
86 87 6.147656 GCACGTTGATATCATTGTATGATCCA 59.852 38.462 6.17 3.75 46.62 3.41
87 88 7.622880 GCACGTTGATATCATTGTATGATCCAG 60.623 40.741 6.17 0.00 46.62 3.86
88 89 6.369890 ACGTTGATATCATTGTATGATCCAGC 59.630 38.462 6.17 6.95 46.62 4.85
89 90 6.183360 CGTTGATATCATTGTATGATCCAGCC 60.183 42.308 6.17 1.78 46.62 4.85
90 91 6.377245 TGATATCATTGTATGATCCAGCCA 57.623 37.500 0.00 0.00 46.62 4.75
91 92 6.965607 TGATATCATTGTATGATCCAGCCAT 58.034 36.000 0.00 0.00 46.62 4.40
92 93 6.826741 TGATATCATTGTATGATCCAGCCATG 59.173 38.462 0.00 0.00 46.62 3.66
93 94 3.151554 TCATTGTATGATCCAGCCATGC 58.848 45.455 0.00 0.00 33.59 4.06
94 95 1.985473 TTGTATGATCCAGCCATGCC 58.015 50.000 0.00 0.00 0.00 4.40
95 96 0.845337 TGTATGATCCAGCCATGCCA 59.155 50.000 0.00 0.00 0.00 4.92
96 97 1.214923 TGTATGATCCAGCCATGCCAA 59.785 47.619 0.00 0.00 0.00 4.52
97 98 2.309613 GTATGATCCAGCCATGCCAAA 58.690 47.619 0.00 0.00 0.00 3.28
98 99 1.410004 ATGATCCAGCCATGCCAAAG 58.590 50.000 0.00 0.00 0.00 2.77
99 100 0.332293 TGATCCAGCCATGCCAAAGA 59.668 50.000 0.00 0.00 0.00 2.52
100 101 1.272592 TGATCCAGCCATGCCAAAGAA 60.273 47.619 0.00 0.00 0.00 2.52
101 102 1.826720 GATCCAGCCATGCCAAAGAAA 59.173 47.619 0.00 0.00 0.00 2.52
102 103 1.259609 TCCAGCCATGCCAAAGAAAG 58.740 50.000 0.00 0.00 0.00 2.62
103 104 1.203038 TCCAGCCATGCCAAAGAAAGA 60.203 47.619 0.00 0.00 0.00 2.52
104 105 1.203994 CCAGCCATGCCAAAGAAAGAG 59.796 52.381 0.00 0.00 0.00 2.85
105 106 1.891150 CAGCCATGCCAAAGAAAGAGT 59.109 47.619 0.00 0.00 0.00 3.24
106 107 1.891150 AGCCATGCCAAAGAAAGAGTG 59.109 47.619 0.00 0.00 0.00 3.51
107 108 1.670967 GCCATGCCAAAGAAAGAGTGC 60.671 52.381 0.00 0.00 0.00 4.40
108 109 1.067354 CCATGCCAAAGAAAGAGTGCC 60.067 52.381 0.00 0.00 0.00 5.01
109 110 1.614903 CATGCCAAAGAAAGAGTGCCA 59.385 47.619 0.00 0.00 0.00 4.92
110 111 1.321474 TGCCAAAGAAAGAGTGCCAG 58.679 50.000 0.00 0.00 0.00 4.85
111 112 1.133823 TGCCAAAGAAAGAGTGCCAGA 60.134 47.619 0.00 0.00 0.00 3.86
112 113 2.165998 GCCAAAGAAAGAGTGCCAGAT 58.834 47.619 0.00 0.00 0.00 2.90
113 114 2.163211 GCCAAAGAAAGAGTGCCAGATC 59.837 50.000 0.00 0.00 0.00 2.75
114 115 2.751806 CCAAAGAAAGAGTGCCAGATCC 59.248 50.000 0.00 0.00 0.00 3.36
115 116 3.415212 CAAAGAAAGAGTGCCAGATCCA 58.585 45.455 0.00 0.00 0.00 3.41
116 117 3.347077 AAGAAAGAGTGCCAGATCCAG 57.653 47.619 0.00 0.00 0.00 3.86
117 118 2.544721 AGAAAGAGTGCCAGATCCAGA 58.455 47.619 0.00 0.00 0.00 3.86
118 119 2.500910 AGAAAGAGTGCCAGATCCAGAG 59.499 50.000 0.00 0.00 0.00 3.35
119 120 2.244486 AAGAGTGCCAGATCCAGAGA 57.756 50.000 0.00 0.00 0.00 3.10
120 121 2.475339 AGAGTGCCAGATCCAGAGAT 57.525 50.000 0.00 0.00 34.57 2.75
130 131 3.011949 GATCCAGAGATCTTGAGACGC 57.988 52.381 0.00 0.00 44.78 5.19
131 132 1.107114 TCCAGAGATCTTGAGACGCC 58.893 55.000 0.00 0.00 0.00 5.68
132 133 0.820226 CCAGAGATCTTGAGACGCCA 59.180 55.000 0.00 0.00 0.00 5.69
133 134 1.470632 CCAGAGATCTTGAGACGCCAC 60.471 57.143 0.00 0.00 0.00 5.01
134 135 0.453793 AGAGATCTTGAGACGCCACG 59.546 55.000 0.00 0.00 0.00 4.94
135 136 0.526524 GAGATCTTGAGACGCCACGG 60.527 60.000 0.00 0.00 0.00 4.94
136 137 2.125512 ATCTTGAGACGCCACGGC 60.126 61.111 0.00 0.00 33.59 5.68
137 138 3.665675 ATCTTGAGACGCCACGGCC 62.666 63.158 1.63 0.00 34.11 6.13
138 139 4.379243 CTTGAGACGCCACGGCCT 62.379 66.667 0.00 0.00 34.11 5.19
139 140 4.373116 TTGAGACGCCACGGCCTC 62.373 66.667 0.00 4.99 34.11 4.70
141 142 3.138798 GAGACGCCACGGCCTCTA 61.139 66.667 9.22 0.00 36.81 2.43
142 143 3.127352 GAGACGCCACGGCCTCTAG 62.127 68.421 9.22 0.00 36.81 2.43
143 144 3.450115 GACGCCACGGCCTCTAGT 61.450 66.667 0.00 0.00 37.98 2.57
144 145 2.044650 ACGCCACGGCCTCTAGTA 60.045 61.111 0.00 0.00 37.98 1.82
145 146 1.453762 GACGCCACGGCCTCTAGTAT 61.454 60.000 0.00 0.00 37.98 2.12
146 147 1.041447 ACGCCACGGCCTCTAGTATT 61.041 55.000 0.00 0.00 37.98 1.89
147 148 0.104304 CGCCACGGCCTCTAGTATTT 59.896 55.000 0.00 0.00 37.98 1.40
148 149 1.472728 CGCCACGGCCTCTAGTATTTT 60.473 52.381 0.00 0.00 37.98 1.82
149 150 1.940613 GCCACGGCCTCTAGTATTTTG 59.059 52.381 0.00 0.00 34.56 2.44
150 151 2.679930 GCCACGGCCTCTAGTATTTTGT 60.680 50.000 0.00 0.00 34.56 2.83
151 152 2.936498 CCACGGCCTCTAGTATTTTGTG 59.064 50.000 0.00 0.00 0.00 3.33
152 153 3.596214 CACGGCCTCTAGTATTTTGTGT 58.404 45.455 0.00 0.00 0.00 3.72
153 154 3.370978 CACGGCCTCTAGTATTTTGTGTG 59.629 47.826 0.00 0.00 0.00 3.82
154 155 2.936498 CGGCCTCTAGTATTTTGTGTGG 59.064 50.000 0.00 0.00 0.00 4.17
155 156 3.618997 CGGCCTCTAGTATTTTGTGTGGT 60.619 47.826 0.00 0.00 0.00 4.16
156 157 4.332828 GGCCTCTAGTATTTTGTGTGGTT 58.667 43.478 0.00 0.00 0.00 3.67
157 158 4.765339 GGCCTCTAGTATTTTGTGTGGTTT 59.235 41.667 0.00 0.00 0.00 3.27
158 159 5.243060 GGCCTCTAGTATTTTGTGTGGTTTT 59.757 40.000 0.00 0.00 0.00 2.43
159 160 6.149633 GCCTCTAGTATTTTGTGTGGTTTTG 58.850 40.000 0.00 0.00 0.00 2.44
160 161 6.016610 GCCTCTAGTATTTTGTGTGGTTTTGA 60.017 38.462 0.00 0.00 0.00 2.69
161 162 7.469456 GCCTCTAGTATTTTGTGTGGTTTTGAA 60.469 37.037 0.00 0.00 0.00 2.69
164 165 9.349713 TCTAGTATTTTGTGTGGTTTTGAAGAT 57.650 29.630 0.00 0.00 0.00 2.40
171 172 3.380004 GTGTGGTTTTGAAGATGTCACCA 59.620 43.478 0.00 0.00 35.39 4.17
200 201 4.123506 GCACTAACTTCCATAAGAGCTCC 58.876 47.826 10.93 0.00 36.50 4.70
202 203 5.112686 CACTAACTTCCATAAGAGCTCCAC 58.887 45.833 10.93 0.00 36.50 4.02
213 214 0.744771 GAGCTCCACGGTTCCCATTC 60.745 60.000 0.87 0.00 0.00 2.67
215 216 2.046700 TCCACGGTTCCCATTCGC 60.047 61.111 0.00 0.00 0.00 4.70
218 219 2.746277 ACGGTTCCCATTCGCTGC 60.746 61.111 0.00 0.00 0.00 5.25
220 221 2.435938 GGTTCCCATTCGCTGCGA 60.436 61.111 22.24 22.24 0.00 5.10
228 229 1.005037 ATTCGCTGCGACAACCTCA 60.005 52.632 25.94 8.66 34.89 3.86
234 235 1.581934 CTGCGACAACCTCAACTTGA 58.418 50.000 0.00 0.00 0.00 3.02
235 236 1.528586 CTGCGACAACCTCAACTTGAG 59.471 52.381 11.37 11.37 43.91 3.02
242 243 1.818642 ACCTCAACTTGAGCTGCATC 58.181 50.000 12.69 0.00 42.98 3.91
245 246 1.128136 CTCAACTTGAGCTGCATCACG 59.872 52.381 5.84 3.48 37.72 4.35
255 256 4.783621 GCATCACGCAGGGGCTCA 62.784 66.667 0.00 0.00 41.79 4.26
259 260 4.680237 CACGCAGGGGCTCACGAA 62.680 66.667 6.83 0.00 38.10 3.85
261 262 2.355986 ACGCAGGGGCTCACGAATA 61.356 57.895 6.83 0.00 38.10 1.75
270 271 2.224548 GGGCTCACGAATATTAGGGCTT 60.225 50.000 6.79 0.00 0.00 4.35
271 272 3.007614 GGGCTCACGAATATTAGGGCTTA 59.992 47.826 6.79 0.00 0.00 3.09
272 273 4.504340 GGGCTCACGAATATTAGGGCTTAA 60.504 45.833 6.79 0.00 0.00 1.85
279 280 9.349713 TCACGAATATTAGGGCTTAATTTTCAT 57.650 29.630 22.57 11.93 38.53 2.57
284 285 5.906113 TTAGGGCTTAATTTTCATTGCGA 57.094 34.783 0.00 0.00 0.00 5.10
296 297 2.229792 TCATTGCGATATTTGGGGCTC 58.770 47.619 0.00 0.00 0.00 4.70
308 309 3.775654 GGGCTCCCACTCTCCGTG 61.776 72.222 0.00 0.00 43.41 4.94
317 318 0.888619 CACTCTCCGTGTGGAAGCTA 59.111 55.000 0.00 0.00 45.87 3.32
338 339 2.119801 AGCTCATCGACCTGCAATTT 57.880 45.000 7.85 0.00 0.00 1.82
339 340 1.741706 AGCTCATCGACCTGCAATTTG 59.258 47.619 7.85 0.00 0.00 2.32
341 342 2.095059 GCTCATCGACCTGCAATTTGTT 60.095 45.455 0.00 0.00 0.00 2.83
350 351 5.138125 ACCTGCAATTTGTTGTGGATAAG 57.862 39.130 0.00 0.00 0.00 1.73
351 352 4.832266 ACCTGCAATTTGTTGTGGATAAGA 59.168 37.500 0.00 0.00 0.00 2.10
359 360 1.599542 GTTGTGGATAAGATGGCGAGC 59.400 52.381 0.00 0.00 0.00 5.03
361 362 1.209261 TGTGGATAAGATGGCGAGCAA 59.791 47.619 0.00 0.00 0.00 3.91
366 367 3.304928 GGATAAGATGGCGAGCAAATTGG 60.305 47.826 0.00 0.00 0.00 3.16
371 372 1.737735 GGCGAGCAAATTGGCAACC 60.738 57.895 7.75 1.15 37.80 3.77
399 400 2.224499 GGCCAAAACATCACCACCATTT 60.224 45.455 0.00 0.00 0.00 2.32
428 429 2.797156 CACTCTTGTCAAGTCGGTTCTG 59.203 50.000 12.30 0.00 0.00 3.02
440 441 1.070134 TCGGTTCTGACTTCCCAAGTG 59.930 52.381 0.00 0.00 43.03 3.16
443 444 3.056107 CGGTTCTGACTTCCCAAGTGATA 60.056 47.826 0.00 0.00 43.03 2.15
461 462 2.134201 TATACTTCATCACGCCGCTG 57.866 50.000 0.00 0.00 0.00 5.18
464 465 2.741985 TTCATCACGCCGCTGGTG 60.742 61.111 6.60 6.60 39.41 4.17
473 475 1.577328 CGCCGCTGGTGATTCAAACT 61.577 55.000 2.49 0.00 34.74 2.66
478 480 2.159627 CGCTGGTGATTCAAACTACCAC 59.840 50.000 0.00 0.00 38.23 4.16
482 484 3.139397 TGGTGATTCAAACTACCACCCTT 59.861 43.478 0.00 0.00 44.85 3.95
487 489 5.534654 TGATTCAAACTACCACCCTTCAAAG 59.465 40.000 0.00 0.00 0.00 2.77
491 493 3.073274 ACTACCACCCTTCAAAGCATC 57.927 47.619 0.00 0.00 0.00 3.91
497 499 3.553508 CCACCCTTCAAAGCATCAACAAG 60.554 47.826 0.00 0.00 0.00 3.16
508 510 2.787994 CATCAACAAGCTTGAGAGGGT 58.212 47.619 32.50 11.79 0.00 4.34
509 511 2.550830 TCAACAAGCTTGAGAGGGTC 57.449 50.000 32.50 0.00 0.00 4.46
539 541 4.684703 CGATTATGGTCGGATAAGACAACC 59.315 45.833 0.00 0.00 42.62 3.77
548 550 4.759516 GGATAAGACAACCGAAGCAAAA 57.240 40.909 0.00 0.00 0.00 2.44
562 564 7.952816 AACCGAAGCAAAATGCAAGGTTAATTA 60.953 33.333 19.79 0.00 46.47 1.40
568 570 6.818142 GCAAAATGCAAGGTTAATTAGGACAT 59.182 34.615 0.00 0.00 44.26 3.06
574 576 6.072175 TGCAAGGTTAATTAGGACATTGTCAC 60.072 38.462 18.09 7.94 39.12 3.67
575 577 6.625081 GCAAGGTTAATTAGGACATTGTCACC 60.625 42.308 18.09 13.96 39.12 4.02
576 578 5.183228 AGGTTAATTAGGACATTGTCACCG 58.817 41.667 18.09 0.00 33.68 4.94
596 598 4.467084 CCGCGTGCCTATGGGTGT 62.467 66.667 4.92 0.00 34.45 4.16
599 601 2.398554 GCGTGCCTATGGGTGTGTG 61.399 63.158 0.00 0.00 34.45 3.82
600 602 1.003839 CGTGCCTATGGGTGTGTGT 60.004 57.895 0.00 0.00 34.45 3.72
601 603 1.298157 CGTGCCTATGGGTGTGTGTG 61.298 60.000 0.00 0.00 34.45 3.82
602 604 0.960364 GTGCCTATGGGTGTGTGTGG 60.960 60.000 0.00 0.00 34.45 4.17
603 605 1.378514 GCCTATGGGTGTGTGTGGG 60.379 63.158 0.00 0.00 34.45 4.61
604 606 1.302949 CCTATGGGTGTGTGTGGGG 59.697 63.158 0.00 0.00 0.00 4.96
605 607 1.497309 CCTATGGGTGTGTGTGGGGT 61.497 60.000 0.00 0.00 0.00 4.95
606 608 0.322456 CTATGGGTGTGTGTGGGGTG 60.322 60.000 0.00 0.00 0.00 4.61
607 609 1.784301 TATGGGTGTGTGTGGGGTGG 61.784 60.000 0.00 0.00 0.00 4.61
608 610 4.596585 GGGTGTGTGTGGGGTGGG 62.597 72.222 0.00 0.00 0.00 4.61
632 634 4.149598 GGGTCCTCAATACCAACAAGTTT 58.850 43.478 0.00 0.00 38.87 2.66
634 636 4.583073 GGTCCTCAATACCAACAAGTTTGT 59.417 41.667 0.00 0.00 44.72 2.83
679 682 1.273838 TGGTATGAGTGGAAGGAGCCT 60.274 52.381 0.00 0.00 0.00 4.58
697 700 1.616159 CTACAAAGTTGTGGGTGGGG 58.384 55.000 6.94 0.00 42.31 4.96
698 701 1.144093 CTACAAAGTTGTGGGTGGGGA 59.856 52.381 6.94 0.00 42.31 4.81
700 703 0.184933 CAAAGTTGTGGGTGGGGAGA 59.815 55.000 0.00 0.00 0.00 3.71
702 705 0.401395 AAGTTGTGGGTGGGGAGAGA 60.401 55.000 0.00 0.00 0.00 3.10
714 718 1.596895 GGGAGAGAGACCCGTGTGAC 61.597 65.000 0.00 0.00 37.85 3.67
720 724 1.521450 GAGACCCGTGTGACGAGGAA 61.521 60.000 9.64 0.00 46.05 3.36
739 745 6.072199 AGGAAGACCTCAAATTTCTATGCT 57.928 37.500 0.00 0.00 44.13 3.79
767 773 1.442769 CATCACGGTTGGGAAGACAG 58.557 55.000 0.00 0.00 0.00 3.51
785 791 2.159254 ACAGCATTTGTTTGACGTTGCT 60.159 40.909 1.40 1.40 40.83 3.91
788 794 2.468777 GCATTTGTTTGACGTTGCTCTG 59.531 45.455 0.00 0.00 0.00 3.35
858 864 2.202236 GAAGATGGGGCTGCTGTCCA 62.202 60.000 16.72 12.55 40.42 4.02
944 950 2.024871 GAGCTCGTCGATCCCACG 59.975 66.667 0.00 5.65 38.67 4.94
1001 1007 2.126071 CGCCACCTCGTCGTCAAT 60.126 61.111 0.00 0.00 0.00 2.57
1017 1023 3.548770 GTCAATGAGATCATCAAGGCCA 58.451 45.455 5.01 0.00 42.53 5.36
1082 1088 4.499040 CCGCAATTGTTTGTTTATCGATCC 59.501 41.667 0.00 0.00 35.17 3.36
1083 1089 4.202158 CGCAATTGTTTGTTTATCGATCCG 59.798 41.667 0.00 0.00 35.17 4.18
1084 1090 4.027702 GCAATTGTTTGTTTATCGATCCGC 60.028 41.667 0.00 0.00 35.17 5.54
1121 1132 3.328382 TTTTGGACTCGGTACTCCATG 57.672 47.619 2.65 0.00 36.42 3.66
1128 1139 0.464036 TCGGTACTCCATGGATGTGC 59.536 55.000 16.63 17.42 0.00 4.57
1179 1190 4.324991 GAGGTGGTCGGGGCGTTT 62.325 66.667 0.00 0.00 0.00 3.60
1242 1253 0.183252 AGCTCCCCTACTACTCCGAC 59.817 60.000 0.00 0.00 0.00 4.79
1266 1277 2.968697 ACCAAACCGTTCCGCGTC 60.969 61.111 4.92 0.00 39.32 5.19
1300 1311 2.087095 CTACGTCCTCGACCGTAGCG 62.087 65.000 16.74 4.32 40.62 4.26
1327 1338 2.879907 GGTACTGGCGCGACTACA 59.120 61.111 15.80 3.01 0.00 2.74
1329 1340 0.179119 GGTACTGGCGCGACTACATT 60.179 55.000 15.80 0.97 0.00 2.71
1350 1361 2.743928 CTGCAGTGCTTCCCCGTC 60.744 66.667 17.60 0.00 0.00 4.79
1358 1369 3.057337 CTTCCCCGTCGACAGGTT 58.943 61.111 16.52 0.00 0.00 3.50
1734 1745 3.200825 TGGAGGTCCATCTTCAATTCCTC 59.799 47.826 0.00 0.00 42.01 3.71
1735 1746 3.200825 GGAGGTCCATCTTCAATTCCTCA 59.799 47.826 9.89 0.00 40.92 3.86
1736 1747 4.141298 GGAGGTCCATCTTCAATTCCTCAT 60.141 45.833 9.89 0.00 40.92 2.90
1737 1748 5.046288 AGGTCCATCTTCAATTCCTCATC 57.954 43.478 0.00 0.00 0.00 2.92
1743 1754 3.384668 TCTTCAATTCCTCATCGATCGC 58.615 45.455 11.09 0.00 0.00 4.58
1746 1757 4.584327 TCAATTCCTCATCGATCGCTAA 57.416 40.909 11.09 0.00 0.00 3.09
1748 1759 5.541845 TCAATTCCTCATCGATCGCTAATT 58.458 37.500 11.09 0.93 0.00 1.40
1754 1765 4.386049 CCTCATCGATCGCTAATTTGGTAC 59.614 45.833 11.09 0.00 0.00 3.34
1755 1766 5.196341 TCATCGATCGCTAATTTGGTACT 57.804 39.130 11.09 0.00 0.00 2.73
1757 1768 6.741109 TCATCGATCGCTAATTTGGTACTTA 58.259 36.000 11.09 0.00 0.00 2.24
1758 1769 7.375834 TCATCGATCGCTAATTTGGTACTTAT 58.624 34.615 11.09 0.00 0.00 1.73
1759 1770 7.328493 TCATCGATCGCTAATTTGGTACTTATG 59.672 37.037 11.09 3.19 0.00 1.90
1760 1771 6.509656 TCGATCGCTAATTTGGTACTTATGT 58.490 36.000 11.09 0.00 0.00 2.29
1761 1772 7.650890 TCGATCGCTAATTTGGTACTTATGTA 58.349 34.615 11.09 0.00 0.00 2.29
1800 1811 3.829886 TCATTCATTCCTCGTTTGTGC 57.170 42.857 0.00 0.00 0.00 4.57
1801 1812 3.411446 TCATTCATTCCTCGTTTGTGCT 58.589 40.909 0.00 0.00 0.00 4.40
1802 1813 3.189080 TCATTCATTCCTCGTTTGTGCTG 59.811 43.478 0.00 0.00 0.00 4.41
1803 1814 2.254546 TCATTCCTCGTTTGTGCTGT 57.745 45.000 0.00 0.00 0.00 4.40
1804 1815 1.872952 TCATTCCTCGTTTGTGCTGTG 59.127 47.619 0.00 0.00 0.00 3.66
1820 1831 0.939106 TGTGTGTGCAGATCGTGACG 60.939 55.000 0.00 0.00 0.00 4.35
1905 1916 1.656818 GGTGACCATCATGTTGCCGG 61.657 60.000 0.00 0.00 0.00 6.13
1970 1981 2.436109 GGGCAGGCCAAGTTCAGA 59.564 61.111 13.10 0.00 37.98 3.27
1985 1996 1.215647 CAGACCGTTCCTCTTCCGG 59.784 63.158 0.00 0.00 46.93 5.14
2052 2063 0.105778 GCTCCAGCGCTTTAGGATCT 59.894 55.000 14.72 0.00 0.00 2.75
2060 2071 1.603172 CGCTTTAGGATCTACCCTGCG 60.603 57.143 0.00 0.00 40.05 5.18
2079 2090 0.107848 GGGTACAATGGAGTGACCGG 60.108 60.000 0.00 0.00 42.61 5.28
2080 2091 0.743345 GGTACAATGGAGTGACCGGC 60.743 60.000 0.00 0.00 42.61 6.13
2081 2092 0.743345 GTACAATGGAGTGACCGGCC 60.743 60.000 0.00 0.00 42.61 6.13
2082 2093 2.233605 TACAATGGAGTGACCGGCCG 62.234 60.000 21.04 21.04 42.61 6.13
2083 2094 4.096003 AATGGAGTGACCGGCCGG 62.096 66.667 42.17 42.17 42.61 6.13
2096 2107 2.179267 GCCGGCTACTTGCTTTGC 59.821 61.111 22.15 0.00 42.39 3.68
2097 2108 2.625823 GCCGGCTACTTGCTTTGCA 61.626 57.895 22.15 0.00 42.39 4.08
2099 2110 0.179156 CCGGCTACTTGCTTTGCATG 60.179 55.000 0.00 4.28 38.76 4.06
2100 2111 0.179156 CGGCTACTTGCTTTGCATGG 60.179 55.000 9.60 2.10 38.76 3.66
2101 2112 0.890683 GGCTACTTGCTTTGCATGGT 59.109 50.000 9.60 7.01 38.76 3.55
2102 2113 1.273327 GGCTACTTGCTTTGCATGGTT 59.727 47.619 9.60 0.00 38.76 3.67
2103 2114 2.599659 GCTACTTGCTTTGCATGGTTC 58.400 47.619 9.60 0.00 38.76 3.62
2104 2115 2.672195 GCTACTTGCTTTGCATGGTTCC 60.672 50.000 9.60 0.00 38.76 3.62
2105 2116 1.412079 ACTTGCTTTGCATGGTTCCA 58.588 45.000 9.60 0.00 38.76 3.53
2106 2117 1.761784 ACTTGCTTTGCATGGTTCCAA 59.238 42.857 9.60 0.00 38.76 3.53
2122 2133 0.808755 CCAACCATTAACGGCTCCAC 59.191 55.000 0.00 0.00 0.00 4.02
2128 2139 3.244630 ACCATTAACGGCTCCACTAAACA 60.245 43.478 0.00 0.00 0.00 2.83
2174 2185 6.149474 CAGTTTGGAGGTGTCTTATAAGTTGG 59.851 42.308 12.19 0.00 0.00 3.77
2180 2191 6.051179 AGGTGTCTTATAAGTTGGTTCTCC 57.949 41.667 12.19 7.55 0.00 3.71
2210 2221 5.746245 TCAACCTTTTGTTTTTGCATCGTAG 59.254 36.000 0.00 0.00 34.00 3.51
2211 2222 4.616953 ACCTTTTGTTTTTGCATCGTAGG 58.383 39.130 0.00 0.00 0.00 3.18
2212 2223 4.098807 ACCTTTTGTTTTTGCATCGTAGGT 59.901 37.500 0.00 0.00 0.00 3.08
2213 2224 5.299782 ACCTTTTGTTTTTGCATCGTAGGTA 59.700 36.000 0.00 0.00 30.92 3.08
2228 2239 4.468510 TCGTAGGTAATCCCACTGTTTCAT 59.531 41.667 0.00 0.00 34.66 2.57
2235 2246 8.723365 AGGTAATCCCACTGTTTCATAATATCA 58.277 33.333 0.00 0.00 34.66 2.15
2236 2247 9.520515 GGTAATCCCACTGTTTCATAATATCAT 57.479 33.333 0.00 0.00 0.00 2.45
2291 2302 9.398170 GCATTATTATGCGACATGAAATAAAGT 57.602 29.630 0.00 0.00 46.89 2.66
2293 2304 9.897744 ATTATTATGCGACATGAAATAAAGTGG 57.102 29.630 0.00 0.00 0.00 4.00
2294 2305 6.751514 TTATGCGACATGAAATAAAGTGGT 57.248 33.333 0.00 0.00 0.00 4.16
2298 2309 5.009110 TGCGACATGAAATAAAGTGGTGAAA 59.991 36.000 0.00 0.00 0.00 2.69
2301 2312 7.116233 GCGACATGAAATAAAGTGGTGAAATTT 59.884 33.333 0.00 0.00 0.00 1.82
2383 2394 8.614469 TTAATCATGACAGTACAATGAACACA 57.386 30.769 0.00 0.00 0.00 3.72
2418 2429 2.812836 TACACCCAGATCCGTAGACA 57.187 50.000 0.00 0.00 0.00 3.41
2419 2430 1.183549 ACACCCAGATCCGTAGACAC 58.816 55.000 0.00 0.00 0.00 3.67
2424 2435 2.491086 CCCAGATCCGTAGACACCCTAT 60.491 54.545 0.00 0.00 0.00 2.57
2502 2514 2.566010 GCCGGCGCTGAAAAATCA 59.434 55.556 20.25 0.00 0.00 2.57
2757 2775 3.344137 ATTCCTCATGGGCGGCGTT 62.344 57.895 9.37 0.00 34.39 4.84
2980 3008 2.835431 CTCTCCCGATGGCCGAGT 60.835 66.667 0.00 0.00 41.76 4.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 1.880027 CAGCCCACCAGTGAACTTTAC 59.120 52.381 0.00 0.00 0.00 2.01
1 2 1.493022 ACAGCCCACCAGTGAACTTTA 59.507 47.619 0.00 0.00 0.00 1.85
3 4 0.258774 AACAGCCCACCAGTGAACTT 59.741 50.000 0.00 0.00 0.00 2.66
4 5 0.466189 CAACAGCCCACCAGTGAACT 60.466 55.000 0.00 0.00 0.00 3.01
6 7 1.827789 GCAACAGCCCACCAGTGAA 60.828 57.895 0.00 0.00 0.00 3.18
7 8 2.203337 GCAACAGCCCACCAGTGA 60.203 61.111 0.00 0.00 0.00 3.41
8 9 3.297620 GGCAACAGCCCACCAGTG 61.298 66.667 0.00 0.00 42.80 3.66
25 26 0.169009 GTTTGCTAGGCTTGCCGAAG 59.831 55.000 18.00 9.01 0.00 3.79
26 27 0.536233 TGTTTGCTAGGCTTGCCGAA 60.536 50.000 18.00 10.10 0.00 4.30
27 28 1.072332 TGTTTGCTAGGCTTGCCGA 59.928 52.632 18.00 4.35 0.00 5.54
28 29 1.210155 GTGTTTGCTAGGCTTGCCG 59.790 57.895 18.00 0.00 0.00 5.69
29 30 1.586541 GGTGTTTGCTAGGCTTGCC 59.413 57.895 18.00 2.97 0.00 4.52
30 31 1.210155 CGGTGTTTGCTAGGCTTGC 59.790 57.895 14.14 14.14 0.00 4.01
31 32 0.517316 GTCGGTGTTTGCTAGGCTTG 59.483 55.000 0.00 0.00 0.00 4.01
32 33 0.949105 CGTCGGTGTTTGCTAGGCTT 60.949 55.000 0.00 0.00 0.00 4.35
33 34 1.374252 CGTCGGTGTTTGCTAGGCT 60.374 57.895 0.00 0.00 0.00 4.58
34 35 1.352156 CTCGTCGGTGTTTGCTAGGC 61.352 60.000 0.00 0.00 0.00 3.93
35 36 1.352156 GCTCGTCGGTGTTTGCTAGG 61.352 60.000 0.00 0.00 0.00 3.02
36 37 1.674611 CGCTCGTCGGTGTTTGCTAG 61.675 60.000 0.00 0.00 33.78 3.42
37 38 1.731613 CGCTCGTCGGTGTTTGCTA 60.732 57.895 0.00 0.00 33.78 3.49
38 39 3.036084 CGCTCGTCGGTGTTTGCT 61.036 61.111 0.00 0.00 33.78 3.91
39 40 4.719616 GCGCTCGTCGGTGTTTGC 62.720 66.667 0.00 0.00 38.94 3.68
54 55 1.926510 TGATATCAACGTGCTTCAGCG 59.073 47.619 1.98 0.00 45.83 5.18
55 56 4.201851 ACAATGATATCAACGTGCTTCAGC 60.202 41.667 9.99 0.00 42.50 4.26
56 57 5.475273 ACAATGATATCAACGTGCTTCAG 57.525 39.130 9.99 0.00 0.00 3.02
57 58 6.760770 TCATACAATGATATCAACGTGCTTCA 59.239 34.615 9.99 0.00 33.59 3.02
58 59 7.177498 TCATACAATGATATCAACGTGCTTC 57.823 36.000 9.99 0.00 33.59 3.86
72 73 3.151554 GCATGGCTGGATCATACAATGA 58.848 45.455 0.00 0.00 44.55 2.57
73 74 2.230508 GGCATGGCTGGATCATACAATG 59.769 50.000 12.86 0.00 0.00 2.82
74 75 2.158430 TGGCATGGCTGGATCATACAAT 60.158 45.455 21.08 0.00 0.00 2.71
75 76 1.214923 TGGCATGGCTGGATCATACAA 59.785 47.619 21.08 0.00 0.00 2.41
76 77 0.845337 TGGCATGGCTGGATCATACA 59.155 50.000 21.08 0.00 0.00 2.29
77 78 1.985473 TTGGCATGGCTGGATCATAC 58.015 50.000 21.08 0.00 0.00 2.39
78 79 2.175284 TCTTTGGCATGGCTGGATCATA 59.825 45.455 21.08 0.00 0.00 2.15
79 80 1.063492 TCTTTGGCATGGCTGGATCAT 60.063 47.619 21.08 0.00 0.00 2.45
80 81 0.332293 TCTTTGGCATGGCTGGATCA 59.668 50.000 21.08 0.00 0.00 2.92
81 82 1.477553 TTCTTTGGCATGGCTGGATC 58.522 50.000 21.08 0.00 0.00 3.36
82 83 1.829222 CTTTCTTTGGCATGGCTGGAT 59.171 47.619 21.08 0.00 0.00 3.41
83 84 1.203038 TCTTTCTTTGGCATGGCTGGA 60.203 47.619 21.08 12.27 0.00 3.86
84 85 1.203994 CTCTTTCTTTGGCATGGCTGG 59.796 52.381 21.08 10.17 0.00 4.85
85 86 1.891150 ACTCTTTCTTTGGCATGGCTG 59.109 47.619 21.08 10.56 0.00 4.85
86 87 1.891150 CACTCTTTCTTTGGCATGGCT 59.109 47.619 21.08 0.00 0.00 4.75
87 88 1.670967 GCACTCTTTCTTTGGCATGGC 60.671 52.381 13.29 13.29 0.00 4.40
88 89 1.067354 GGCACTCTTTCTTTGGCATGG 60.067 52.381 0.00 0.00 35.91 3.66
89 90 1.614903 TGGCACTCTTTCTTTGGCATG 59.385 47.619 0.00 0.00 40.56 4.06
90 91 1.891150 CTGGCACTCTTTCTTTGGCAT 59.109 47.619 0.00 0.00 43.98 4.40
91 92 1.133823 TCTGGCACTCTTTCTTTGGCA 60.134 47.619 0.00 0.00 42.95 4.92
92 93 1.609208 TCTGGCACTCTTTCTTTGGC 58.391 50.000 0.00 0.00 36.39 4.52
93 94 2.751806 GGATCTGGCACTCTTTCTTTGG 59.248 50.000 0.00 0.00 0.00 3.28
94 95 3.415212 TGGATCTGGCACTCTTTCTTTG 58.585 45.455 0.00 0.00 0.00 2.77
95 96 3.328931 TCTGGATCTGGCACTCTTTCTTT 59.671 43.478 0.00 0.00 0.00 2.52
96 97 2.909006 TCTGGATCTGGCACTCTTTCTT 59.091 45.455 0.00 0.00 0.00 2.52
97 98 2.500910 CTCTGGATCTGGCACTCTTTCT 59.499 50.000 0.00 0.00 0.00 2.52
98 99 2.499289 TCTCTGGATCTGGCACTCTTTC 59.501 50.000 0.00 0.00 0.00 2.62
99 100 2.544721 TCTCTGGATCTGGCACTCTTT 58.455 47.619 0.00 0.00 0.00 2.52
100 101 2.244486 TCTCTGGATCTGGCACTCTT 57.756 50.000 0.00 0.00 0.00 2.85
101 102 2.318908 GATCTCTGGATCTGGCACTCT 58.681 52.381 0.00 0.00 43.55 3.24
102 103 2.818130 GATCTCTGGATCTGGCACTC 57.182 55.000 0.00 0.00 43.55 3.51
110 111 2.288152 GGCGTCTCAAGATCTCTGGATC 60.288 54.545 0.00 0.00 46.33 3.36
111 112 1.686052 GGCGTCTCAAGATCTCTGGAT 59.314 52.381 0.00 0.00 34.45 3.41
112 113 1.107114 GGCGTCTCAAGATCTCTGGA 58.893 55.000 0.00 0.00 0.00 3.86
113 114 0.820226 TGGCGTCTCAAGATCTCTGG 59.180 55.000 0.00 0.00 0.00 3.86
114 115 1.796982 CGTGGCGTCTCAAGATCTCTG 60.797 57.143 0.00 0.00 0.00 3.35
115 116 0.453793 CGTGGCGTCTCAAGATCTCT 59.546 55.000 0.00 0.00 0.00 3.10
116 117 0.526524 CCGTGGCGTCTCAAGATCTC 60.527 60.000 0.00 0.00 0.00 2.75
117 118 1.513158 CCGTGGCGTCTCAAGATCT 59.487 57.895 0.00 0.00 0.00 2.75
118 119 2.167861 GCCGTGGCGTCTCAAGATC 61.168 63.158 0.00 0.00 0.00 2.75
119 120 2.125512 GCCGTGGCGTCTCAAGAT 60.126 61.111 0.00 0.00 0.00 2.40
120 121 4.373116 GGCCGTGGCGTCTCAAGA 62.373 66.667 4.53 0.00 43.06 3.02
121 122 4.379243 AGGCCGTGGCGTCTCAAG 62.379 66.667 4.53 0.00 43.06 3.02
127 128 1.041447 AATACTAGAGGCCGTGGCGT 61.041 55.000 5.66 5.66 43.06 5.68
128 129 0.104304 AAATACTAGAGGCCGTGGCG 59.896 55.000 4.53 0.00 43.06 5.69
129 130 1.940613 CAAAATACTAGAGGCCGTGGC 59.059 52.381 1.16 1.16 41.06 5.01
130 131 2.936498 CACAAAATACTAGAGGCCGTGG 59.064 50.000 0.00 0.00 0.00 4.94
131 132 3.370978 CACACAAAATACTAGAGGCCGTG 59.629 47.826 0.00 0.00 0.00 4.94
132 133 3.596214 CACACAAAATACTAGAGGCCGT 58.404 45.455 0.00 0.00 0.00 5.68
133 134 2.936498 CCACACAAAATACTAGAGGCCG 59.064 50.000 0.00 0.00 0.00 6.13
134 135 3.951663 ACCACACAAAATACTAGAGGCC 58.048 45.455 0.00 0.00 0.00 5.19
135 136 5.959618 AAACCACACAAAATACTAGAGGC 57.040 39.130 0.00 0.00 0.00 4.70
136 137 7.504924 TCAAAACCACACAAAATACTAGAGG 57.495 36.000 0.00 0.00 0.00 3.69
137 138 8.836413 TCTTCAAAACCACACAAAATACTAGAG 58.164 33.333 0.00 0.00 0.00 2.43
138 139 8.740123 TCTTCAAAACCACACAAAATACTAGA 57.260 30.769 0.00 0.00 0.00 2.43
139 140 9.398170 CATCTTCAAAACCACACAAAATACTAG 57.602 33.333 0.00 0.00 0.00 2.57
140 141 8.908903 ACATCTTCAAAACCACACAAAATACTA 58.091 29.630 0.00 0.00 0.00 1.82
141 142 7.781056 ACATCTTCAAAACCACACAAAATACT 58.219 30.769 0.00 0.00 0.00 2.12
142 143 7.704472 TGACATCTTCAAAACCACACAAAATAC 59.296 33.333 0.00 0.00 0.00 1.89
143 144 7.704472 GTGACATCTTCAAAACCACACAAAATA 59.296 33.333 0.00 0.00 35.39 1.40
144 145 6.534793 GTGACATCTTCAAAACCACACAAAAT 59.465 34.615 0.00 0.00 35.39 1.82
145 146 5.866633 GTGACATCTTCAAAACCACACAAAA 59.133 36.000 0.00 0.00 35.39 2.44
146 147 5.406649 GTGACATCTTCAAAACCACACAAA 58.593 37.500 0.00 0.00 35.39 2.83
147 148 4.142271 GGTGACATCTTCAAAACCACACAA 60.142 41.667 0.00 0.00 35.39 3.33
148 149 3.380004 GGTGACATCTTCAAAACCACACA 59.620 43.478 0.00 0.00 35.39 3.72
149 150 3.380004 TGGTGACATCTTCAAAACCACAC 59.620 43.478 0.00 0.00 35.39 3.82
150 151 3.625853 TGGTGACATCTTCAAAACCACA 58.374 40.909 0.00 0.00 35.39 4.17
151 152 3.632145 ACTGGTGACATCTTCAAAACCAC 59.368 43.478 0.00 0.00 41.51 4.16
152 153 3.882888 GACTGGTGACATCTTCAAAACCA 59.117 43.478 0.00 0.00 41.51 3.67
153 154 4.023707 CAGACTGGTGACATCTTCAAAACC 60.024 45.833 0.00 0.00 41.51 3.27
154 155 4.576463 ACAGACTGGTGACATCTTCAAAAC 59.424 41.667 7.51 0.00 41.51 2.43
155 156 4.576053 CACAGACTGGTGACATCTTCAAAA 59.424 41.667 7.51 0.00 41.32 2.44
156 157 4.129380 CACAGACTGGTGACATCTTCAAA 58.871 43.478 7.51 0.00 41.32 2.69
157 158 3.732212 CACAGACTGGTGACATCTTCAA 58.268 45.455 7.51 0.00 41.32 2.69
158 159 2.548707 GCACAGACTGGTGACATCTTCA 60.549 50.000 7.51 0.00 41.32 3.02
159 160 2.072298 GCACAGACTGGTGACATCTTC 58.928 52.381 7.51 0.00 41.32 2.87
160 161 1.417517 TGCACAGACTGGTGACATCTT 59.582 47.619 7.51 0.00 41.32 2.40
161 162 1.051008 TGCACAGACTGGTGACATCT 58.949 50.000 7.51 0.00 41.32 2.90
164 165 1.408969 TAGTGCACAGACTGGTGACA 58.591 50.000 21.04 3.50 41.32 3.58
171 172 5.246203 TCTTATGGAAGTTAGTGCACAGACT 59.754 40.000 21.04 18.42 34.03 3.24
213 214 1.498865 AAGTTGAGGTTGTCGCAGCG 61.499 55.000 9.06 9.06 32.25 5.18
215 216 1.528586 CTCAAGTTGAGGTTGTCGCAG 59.471 52.381 22.95 0.00 40.71 5.18
228 229 1.871772 GCGTGATGCAGCTCAAGTT 59.128 52.632 2.53 0.00 45.45 2.66
242 243 2.572095 TATTCGTGAGCCCCTGCGTG 62.572 60.000 0.00 0.00 44.33 5.34
245 246 2.417719 CTAATATTCGTGAGCCCCTGC 58.582 52.381 0.00 0.00 37.95 4.85
248 249 1.610886 GCCCTAATATTCGTGAGCCCC 60.611 57.143 0.00 0.00 0.00 5.80
254 255 9.965824 AATGAAAATTAAGCCCTAATATTCGTG 57.034 29.630 0.00 0.00 29.59 4.35
255 256 9.965824 CAATGAAAATTAAGCCCTAATATTCGT 57.034 29.630 0.00 0.00 29.59 3.85
258 259 8.637986 TCGCAATGAAAATTAAGCCCTAATATT 58.362 29.630 0.00 0.00 29.59 1.28
259 260 8.177119 TCGCAATGAAAATTAAGCCCTAATAT 57.823 30.769 0.00 0.00 29.59 1.28
261 262 6.463995 TCGCAATGAAAATTAAGCCCTAAT 57.536 33.333 0.00 0.00 0.00 1.73
270 271 5.988561 GCCCCAAATATCGCAATGAAAATTA 59.011 36.000 0.00 0.00 0.00 1.40
271 272 4.815846 GCCCCAAATATCGCAATGAAAATT 59.184 37.500 0.00 0.00 0.00 1.82
272 273 4.101430 AGCCCCAAATATCGCAATGAAAAT 59.899 37.500 0.00 0.00 0.00 1.82
279 280 0.467290 GGGAGCCCCAAATATCGCAA 60.467 55.000 5.45 0.00 44.65 4.85
299 300 1.629043 TTAGCTTCCACACGGAGAGT 58.371 50.000 0.00 0.00 44.10 3.24
302 303 1.079503 GCTTTAGCTTCCACACGGAG 58.920 55.000 0.00 0.00 44.10 4.63
317 318 2.119801 ATTGCAGGTCGATGAGCTTT 57.880 45.000 7.32 0.00 38.40 3.51
323 324 2.981805 CACAACAAATTGCAGGTCGATG 59.018 45.455 0.00 0.00 39.66 3.84
324 325 2.030007 CCACAACAAATTGCAGGTCGAT 60.030 45.455 0.00 0.00 39.66 3.59
325 326 1.336440 CCACAACAAATTGCAGGTCGA 59.664 47.619 0.00 0.00 39.66 4.20
326 327 1.336440 TCCACAACAAATTGCAGGTCG 59.664 47.619 0.00 0.00 39.66 4.79
332 333 4.567959 GCCATCTTATCCACAACAAATTGC 59.432 41.667 0.00 0.00 39.66 3.56
338 339 2.905075 CTCGCCATCTTATCCACAACA 58.095 47.619 0.00 0.00 0.00 3.33
339 340 1.599542 GCTCGCCATCTTATCCACAAC 59.400 52.381 0.00 0.00 0.00 3.32
341 342 0.829990 TGCTCGCCATCTTATCCACA 59.170 50.000 0.00 0.00 0.00 4.17
350 351 0.108709 TTGCCAATTTGCTCGCCATC 60.109 50.000 2.90 0.00 0.00 3.51
351 352 0.390209 GTTGCCAATTTGCTCGCCAT 60.390 50.000 2.90 0.00 0.00 4.40
359 360 2.159057 GCCCTCATAGGTTGCCAATTTG 60.159 50.000 0.00 0.00 31.93 2.32
361 362 1.689258 GGCCCTCATAGGTTGCCAATT 60.689 52.381 8.00 0.00 40.93 2.32
366 367 1.204704 GTTTTGGCCCTCATAGGTTGC 59.795 52.381 0.00 0.00 31.93 4.17
371 372 2.689983 GGTGATGTTTTGGCCCTCATAG 59.310 50.000 0.00 0.00 0.00 2.23
399 400 2.280797 GACAAGAGTGGCACGCCA 60.281 61.111 17.97 6.67 45.02 5.69
401 402 1.160329 ACTTGACAAGAGTGGCACGC 61.160 55.000 21.95 13.85 44.76 5.34
407 408 2.797156 CAGAACCGACTTGACAAGAGTG 59.203 50.000 21.95 10.82 0.00 3.51
410 411 2.693591 AGTCAGAACCGACTTGACAAGA 59.306 45.455 21.95 0.00 43.84 3.02
440 441 2.663602 CAGCGGCGTGATGAAGTATATC 59.336 50.000 9.37 0.00 35.47 1.63
443 444 0.530650 CCAGCGGCGTGATGAAGTAT 60.531 55.000 9.37 0.00 35.47 2.12
461 462 3.434940 AGGGTGGTAGTTTGAATCACC 57.565 47.619 0.00 0.00 45.05 4.02
464 465 5.564848 GCTTTGAAGGGTGGTAGTTTGAATC 60.565 44.000 0.00 0.00 0.00 2.52
467 468 3.219281 GCTTTGAAGGGTGGTAGTTTGA 58.781 45.455 0.00 0.00 0.00 2.69
473 475 3.153919 GTTGATGCTTTGAAGGGTGGTA 58.846 45.455 0.00 0.00 0.00 3.25
478 480 2.298163 AGCTTGTTGATGCTTTGAAGGG 59.702 45.455 0.00 0.00 35.86 3.95
482 484 3.884693 TCTCAAGCTTGTTGATGCTTTGA 59.115 39.130 25.19 1.20 45.91 2.69
487 489 1.471684 CCCTCTCAAGCTTGTTGATGC 59.528 52.381 25.19 0.00 0.00 3.91
491 493 2.557920 AGACCCTCTCAAGCTTGTTG 57.442 50.000 25.19 18.51 0.00 3.33
497 499 1.135333 CGTAGGAAGACCCTCTCAAGC 59.865 57.143 0.00 0.00 43.31 4.01
500 502 3.383698 AATCGTAGGAAGACCCTCTCA 57.616 47.619 0.00 0.00 43.31 3.27
504 506 5.526714 CGACCATAATCGTAGGAAGACCCT 61.527 50.000 0.00 0.00 40.05 4.34
508 510 3.824133 TCCGACCATAATCGTAGGAAGA 58.176 45.455 0.00 0.00 40.59 2.87
509 511 4.785511 ATCCGACCATAATCGTAGGAAG 57.214 45.455 0.00 0.00 38.33 3.46
515 517 5.287226 GTTGTCTTATCCGACCATAATCGT 58.713 41.667 0.00 0.00 40.59 3.73
516 518 4.684703 GGTTGTCTTATCCGACCATAATCG 59.315 45.833 0.00 0.00 41.89 3.34
518 520 4.342951 TCGGTTGTCTTATCCGACCATAAT 59.657 41.667 1.35 0.00 46.54 1.28
520 522 3.289836 TCGGTTGTCTTATCCGACCATA 58.710 45.455 1.35 0.00 46.54 2.74
521 523 2.104967 TCGGTTGTCTTATCCGACCAT 58.895 47.619 1.35 0.00 46.54 3.55
522 524 1.548081 TCGGTTGTCTTATCCGACCA 58.452 50.000 1.35 0.00 46.54 4.02
539 541 5.844301 AATTAACCTTGCATTTTGCTTCG 57.156 34.783 0.75 0.00 45.31 3.79
541 543 6.873605 GTCCTAATTAACCTTGCATTTTGCTT 59.126 34.615 0.75 0.00 45.31 3.91
542 544 6.014669 TGTCCTAATTAACCTTGCATTTTGCT 60.015 34.615 0.75 0.00 45.31 3.91
548 550 6.663093 TGACAATGTCCTAATTAACCTTGCAT 59.337 34.615 11.24 0.00 0.00 3.96
557 559 3.683281 GCCCGGTGACAATGTCCTAATTA 60.683 47.826 11.24 0.00 0.00 1.40
562 564 2.351276 GCCCGGTGACAATGTCCT 59.649 61.111 11.24 0.00 0.00 3.85
583 585 0.960364 CCACACACACCCATAGGCAC 60.960 60.000 0.00 0.00 36.11 5.01
586 588 1.302949 CCCCACACACACCCATAGG 59.697 63.158 0.00 0.00 40.04 2.57
593 595 4.596585 CCCCCACCCCACACACAC 62.597 72.222 0.00 0.00 0.00 3.82
608 610 0.996583 TGTTGGTATTGAGGACCCCC 59.003 55.000 0.00 0.00 35.99 5.40
617 619 3.049206 CCGCACAAACTTGTTGGTATTG 58.951 45.455 0.00 0.00 39.91 1.90
620 622 1.025812 CCCGCACAAACTTGTTGGTA 58.974 50.000 8.89 0.00 39.91 3.25
624 626 1.326951 AAGGCCCGCACAAACTTGTT 61.327 50.000 0.00 0.00 39.91 2.83
625 627 1.756561 AAGGCCCGCACAAACTTGT 60.757 52.632 0.00 0.00 43.36 3.16
647 649 1.417890 CTCATACCAAGGCCACCTAGG 59.582 57.143 7.41 7.41 41.84 3.02
650 652 0.620556 CACTCATACCAAGGCCACCT 59.379 55.000 5.01 0.00 33.87 4.00
679 682 1.144093 CTCCCCACCCACAACTTTGTA 59.856 52.381 0.00 0.00 39.91 2.41
694 697 2.037527 ACACGGGTCTCTCTCCCC 59.962 66.667 0.00 0.00 41.78 4.81
697 700 0.954449 TCGTCACACGGGTCTCTCTC 60.954 60.000 0.00 0.00 42.81 3.20
698 701 0.956410 CTCGTCACACGGGTCTCTCT 60.956 60.000 0.00 0.00 42.81 3.10
700 703 1.972223 CCTCGTCACACGGGTCTCT 60.972 63.158 0.00 0.00 41.30 3.10
702 705 1.524863 CTTCCTCGTCACACGGGTCT 61.525 60.000 0.00 0.00 41.30 3.85
720 724 6.599638 GGTACAAGCATAGAAATTTGAGGTCT 59.400 38.462 0.00 0.00 0.00 3.85
726 730 6.266168 TGGTGGTACAAGCATAGAAATTTG 57.734 37.500 0.00 0.00 44.16 2.32
729 733 5.590259 GTGATGGTGGTACAAGCATAGAAAT 59.410 40.000 14.87 0.00 44.16 2.17
736 742 0.321210 CCGTGATGGTGGTACAAGCA 60.321 55.000 4.25 4.25 44.16 3.91
760 766 3.952535 ACGTCAAACAAATGCTGTCTTC 58.047 40.909 0.00 0.00 37.23 2.87
767 773 2.468777 CAGAGCAACGTCAAACAAATGC 59.531 45.455 0.00 0.00 0.00 3.56
805 811 7.484975 TCAGATTTTTCAGACTAGCTAGTAGC 58.515 38.462 26.11 14.62 42.84 3.58
858 864 4.887190 GTGGTGCACCGGGGTGTT 62.887 66.667 30.07 0.00 46.90 3.32
930 936 2.404186 TGACCGTGGGATCGACGAG 61.404 63.158 15.40 9.18 39.21 4.18
983 989 2.632544 ATTGACGACGAGGTGGCGA 61.633 57.895 0.00 0.00 34.83 5.54
1001 1007 0.913924 TGCTGGCCTTGATGATCTCA 59.086 50.000 3.32 0.00 0.00 3.27
1017 1023 2.147150 GAAGAAGCCGAACTCTTTGCT 58.853 47.619 0.00 0.00 35.08 3.91
1060 1066 4.202158 CGGATCGATAAACAAACAATTGCG 59.798 41.667 5.05 0.00 40.34 4.85
1061 1067 4.027702 GCGGATCGATAAACAAACAATTGC 60.028 41.667 5.05 0.00 40.34 3.56
1082 1088 0.877649 ATCAATAGCTGAGTGGCGCG 60.878 55.000 0.00 0.00 37.52 6.86
1083 1089 1.303309 AATCAATAGCTGAGTGGCGC 58.697 50.000 0.00 0.00 37.52 6.53
1084 1090 3.488047 CCAAAATCAATAGCTGAGTGGCG 60.488 47.826 0.00 0.00 37.52 5.69
1121 1132 0.675633 AACCTGTTTGCAGCACATCC 59.324 50.000 0.00 0.00 41.26 3.51
1206 1217 4.161295 TTCTCCTCCGCCGGCATG 62.161 66.667 28.98 17.39 0.00 4.06
1242 1253 1.226030 GGAACGGTTTGGTGAGGTCG 61.226 60.000 0.00 0.00 0.00 4.79
1266 1277 1.374252 GTAGGTGGTGCTGGTGTCG 60.374 63.158 0.00 0.00 0.00 4.35
1272 1283 1.215647 GAGGACGTAGGTGGTGCTG 59.784 63.158 0.00 0.00 36.13 4.41
1327 1338 0.964358 GGGAAGCACTGCAGCTGAAT 60.964 55.000 20.43 0.00 45.89 2.57
1329 1340 2.033141 GGGAAGCACTGCAGCTGA 59.967 61.111 20.43 1.36 45.89 4.26
1350 1361 1.444553 GTCCTGCGAGAACCTGTCG 60.445 63.158 0.00 0.00 40.50 4.35
1440 1451 2.434884 ATGAGCCCGAGCAACGTG 60.435 61.111 0.00 0.00 43.56 4.49
1513 1524 0.032815 TTCACGTTCATCAGCGTCCA 59.967 50.000 0.00 0.00 39.48 4.02
1515 1526 1.125021 CAGTTCACGTTCATCAGCGTC 59.875 52.381 0.00 0.00 39.48 5.19
1684 1695 2.475685 GGCCGAAGTTTATGACGAAAGC 60.476 50.000 0.00 0.00 0.00 3.51
1695 1706 0.609131 CCATCAGGTGGCCGAAGTTT 60.609 55.000 0.00 0.00 42.12 2.66
1734 1745 5.907197 AAGTACCAAATTAGCGATCGATG 57.093 39.130 21.57 1.32 0.00 3.84
1735 1746 7.152645 ACATAAGTACCAAATTAGCGATCGAT 58.847 34.615 21.57 16.78 0.00 3.59
1736 1747 6.509656 ACATAAGTACCAAATTAGCGATCGA 58.490 36.000 21.57 0.00 0.00 3.59
1737 1748 6.764877 ACATAAGTACCAAATTAGCGATCG 57.235 37.500 11.69 11.69 0.00 3.69
1743 1754 9.793252 ACGTACACTACATAAGTACCAAATTAG 57.207 33.333 0.00 0.00 35.76 1.73
1746 1757 7.605449 ACACGTACACTACATAAGTACCAAAT 58.395 34.615 0.00 0.00 35.76 2.32
1748 1759 6.573664 ACACGTACACTACATAAGTACCAA 57.426 37.500 0.00 0.00 35.76 3.67
1754 1765 5.463286 TCACCAACACGTACACTACATAAG 58.537 41.667 0.00 0.00 0.00 1.73
1755 1766 5.241285 TCTCACCAACACGTACACTACATAA 59.759 40.000 0.00 0.00 0.00 1.90
1757 1768 3.570975 TCTCACCAACACGTACACTACAT 59.429 43.478 0.00 0.00 0.00 2.29
1758 1769 2.950975 TCTCACCAACACGTACACTACA 59.049 45.455 0.00 0.00 0.00 2.74
1759 1770 3.631145 TCTCACCAACACGTACACTAC 57.369 47.619 0.00 0.00 0.00 2.73
1760 1771 3.822167 TGATCTCACCAACACGTACACTA 59.178 43.478 0.00 0.00 0.00 2.74
1761 1772 2.626266 TGATCTCACCAACACGTACACT 59.374 45.455 0.00 0.00 0.00 3.55
1800 1811 0.786581 GTCACGATCTGCACACACAG 59.213 55.000 0.00 0.00 39.12 3.66
1801 1812 0.939106 CGTCACGATCTGCACACACA 60.939 55.000 0.00 0.00 0.00 3.72
1802 1813 0.663269 TCGTCACGATCTGCACACAC 60.663 55.000 0.00 0.00 0.00 3.82
1803 1814 0.031449 TTCGTCACGATCTGCACACA 59.969 50.000 0.00 0.00 35.23 3.72
1804 1815 0.435008 GTTCGTCACGATCTGCACAC 59.565 55.000 0.00 0.00 35.23 3.82
1850 1861 1.069765 ACTGGAGTTGGTCACTGCG 59.930 57.895 0.00 0.00 46.85 5.18
1905 1916 2.528743 CGATGCGGCAGTCCATGTC 61.529 63.158 9.25 0.00 0.00 3.06
1954 1965 1.973812 GGTCTGAACTTGGCCTGCC 60.974 63.158 3.32 0.00 0.00 4.85
1970 1981 1.982938 CTCCCGGAAGAGGAACGGT 60.983 63.158 0.73 0.00 45.85 4.83
1985 1996 1.069378 CGTACGCCTCGTTGAACTCC 61.069 60.000 0.52 0.00 41.54 3.85
2060 2071 0.107848 CCGGTCACTCCATTGTACCC 60.108 60.000 0.00 0.00 35.57 3.69
2083 2094 2.599659 GAACCATGCAAAGCAAGTAGC 58.400 47.619 0.00 0.00 43.62 3.58
2084 2095 2.557924 TGGAACCATGCAAAGCAAGTAG 59.442 45.455 0.00 0.00 43.62 2.57
2100 2111 1.471287 GGAGCCGTTAATGGTTGGAAC 59.529 52.381 15.21 0.00 0.00 3.62
2101 2112 1.074084 TGGAGCCGTTAATGGTTGGAA 59.926 47.619 15.21 0.00 0.00 3.53
2102 2113 0.693622 TGGAGCCGTTAATGGTTGGA 59.306 50.000 15.21 0.00 0.00 3.53
2103 2114 0.808755 GTGGAGCCGTTAATGGTTGG 59.191 55.000 15.21 0.00 0.00 3.77
2104 2115 1.821216 AGTGGAGCCGTTAATGGTTG 58.179 50.000 15.21 0.00 0.00 3.77
2105 2116 3.706600 TTAGTGGAGCCGTTAATGGTT 57.293 42.857 15.21 9.29 0.00 3.67
2106 2117 3.244630 TGTTTAGTGGAGCCGTTAATGGT 60.245 43.478 15.21 2.30 0.00 3.55
2147 2158 7.259088 ACTTATAAGACACCTCCAAACTGAT 57.741 36.000 19.38 0.00 0.00 2.90
2149 2160 6.149474 CCAACTTATAAGACACCTCCAAACTG 59.851 42.308 19.38 0.00 0.00 3.16
2163 2174 5.959583 AGGGAGGAGAACCAACTTATAAG 57.040 43.478 11.05 11.05 38.94 1.73
2174 2185 3.510531 AAAGGTTGAAGGGAGGAGAAC 57.489 47.619 0.00 0.00 0.00 3.01
2180 2191 4.332543 GCAAAAACAAAAGGTTGAAGGGAG 59.667 41.667 0.00 0.00 40.35 4.30
2210 2221 8.918202 TGATATTATGAAACAGTGGGATTACC 57.082 34.615 0.00 0.00 40.81 2.85
2272 2283 5.877564 TCACCACTTTATTTCATGTCGCATA 59.122 36.000 0.00 0.00 0.00 3.14
2273 2284 4.699735 TCACCACTTTATTTCATGTCGCAT 59.300 37.500 0.00 0.00 0.00 4.73
2274 2285 4.068599 TCACCACTTTATTTCATGTCGCA 58.931 39.130 0.00 0.00 0.00 5.10
2275 2286 4.678509 TCACCACTTTATTTCATGTCGC 57.321 40.909 0.00 0.00 0.00 5.19
2277 2288 9.260002 ACAAATTTCACCACTTTATTTCATGTC 57.740 29.630 0.00 0.00 0.00 3.06
2278 2289 9.612066 AACAAATTTCACCACTTTATTTCATGT 57.388 25.926 0.00 0.00 0.00 3.21
2359 2370 8.614469 TTGTGTTCATTGTACTGTCATGATTA 57.386 30.769 0.00 0.00 0.00 1.75
2404 2415 2.359981 TAGGGTGTCTACGGATCTGG 57.640 55.000 6.47 0.00 0.00 3.86
2418 2429 2.860009 TGCTCTAATCGTCGATAGGGT 58.140 47.619 8.43 0.00 0.00 4.34
2419 2430 3.692101 AGATGCTCTAATCGTCGATAGGG 59.308 47.826 8.43 7.55 0.00 3.53
2424 2435 2.550180 CTGGAGATGCTCTAATCGTCGA 59.450 50.000 0.00 0.00 0.00 4.20
2521 2533 2.748647 CCGGCGAAAATCGGGGTT 60.749 61.111 9.30 0.00 42.32 4.11
2540 2552 4.770874 GCGCTACCTTCGGCCCAA 62.771 66.667 0.00 0.00 0.00 4.12
2551 2563 4.735132 TGTGTCCGCTGGCGCTAC 62.735 66.667 7.64 10.03 38.24 3.58
2559 2571 4.681978 GTTCGGCCTGTGTCCGCT 62.682 66.667 0.00 0.00 46.05 5.52
2605 2621 2.339556 CCAAAATCGCTTGCCCCGA 61.340 57.895 0.00 0.00 39.24 5.14
2617 2633 1.212751 GGCTCTTTCGCGCCAAAAT 59.787 52.632 0.00 0.00 45.59 1.82
2665 2681 1.146263 GGCGTTCGGGGAAGATGAT 59.854 57.895 0.00 0.00 0.00 2.45
2691 2707 2.191908 CCATTGATTCCCCGCGGA 59.808 61.111 30.73 7.23 35.88 5.54
2794 2813 3.381136 GCCCCGTGTGTACCCGTA 61.381 66.667 0.00 0.00 0.00 4.02
2944 2964 2.123033 GAGGGAGGGAGGGAGAGC 60.123 72.222 0.00 0.00 0.00 4.09


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.