Multiple sequence alignment - TraesCS1A01G008300

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G008300 chr1A 100.000 6708 0 0 1 6708 4548923 4555630 0.000000e+00 12388.0
1 TraesCS1A01G008300 chr1A 84.039 2976 432 27 991 3949 5505991 5503042 0.000000e+00 2824.0
2 TraesCS1A01G008300 chr1A 83.988 2979 434 28 991 3949 6341263 6338308 0.000000e+00 2819.0
3 TraesCS1A01G008300 chr1A 79.558 1991 316 52 3665 5571 6338799 6336816 0.000000e+00 1338.0
4 TraesCS1A01G008300 chr1A 79.346 1651 273 39 3944 5555 6009929 6008308 0.000000e+00 1098.0
5 TraesCS1A01G008300 chr1A 78.776 1715 276 46 3935 5571 4500499 4502203 0.000000e+00 1070.0
6 TraesCS1A01G008300 chr1A 78.085 1702 300 48 3913 5562 5524474 5522794 0.000000e+00 1009.0
7 TraesCS1A01G008300 chr1A 79.441 1430 225 37 3974 5341 4504746 4506168 0.000000e+00 948.0
8 TraesCS1A01G008300 chr1A 80.603 1062 178 18 4303 5341 5647164 5646108 0.000000e+00 795.0
9 TraesCS1A01G008300 chr1D 96.531 2825 95 3 1 2822 4972429 4969605 0.000000e+00 4671.0
10 TraesCS1A01G008300 chr1D 95.786 2824 100 4 1 2822 3147425 3150231 0.000000e+00 4538.0
11 TraesCS1A01G008300 chr1D 84.370 2975 418 29 988 3949 5135223 5132283 0.000000e+00 2874.0
12 TraesCS1A01G008300 chr1D 84.284 2857 417 20 909 3761 3175885 3178713 0.000000e+00 2760.0
13 TraesCS1A01G008300 chr1D 95.075 1604 78 1 2818 4421 4930143 4928541 0.000000e+00 2523.0
14 TraesCS1A01G008300 chr1D 83.260 2497 387 23 1464 3949 77305 74829 0.000000e+00 2266.0
15 TraesCS1A01G008300 chr1D 93.152 1139 43 9 5235 6373 4921474 4920371 0.000000e+00 1639.0
16 TraesCS1A01G008300 chr1D 79.169 1973 311 54 3665 5564 75311 73366 0.000000e+00 1275.0
17 TraesCS1A01G008300 chr1D 78.823 1988 322 56 3665 5571 5132765 5130796 0.000000e+00 1247.0
18 TraesCS1A01G008300 chr1D 94.830 793 34 3 4450 5242 4928544 4927759 0.000000e+00 1230.0
19 TraesCS1A01G008300 chr1D 78.416 1427 238 35 3944 5341 4877199 4875814 0.000000e+00 865.0
20 TraesCS1A01G008300 chr1D 92.857 182 13 0 6403 6584 4920374 4920193 1.430000e-66 265.0
21 TraesCS1A01G008300 chr1D 86.614 127 6 2 6582 6708 4918610 4918495 5.460000e-26 130.0
22 TraesCS1A01G008300 chr1B 84.007 2970 444 16 988 3949 7256974 7254028 0.000000e+00 2824.0
23 TraesCS1A01G008300 chr1B 83.437 3049 443 36 916 3949 7637451 7634450 0.000000e+00 2776.0
24 TraesCS1A01G008300 chr1B 82.938 3077 470 34 909 3949 5851496 5854553 0.000000e+00 2723.0
25 TraesCS1A01G008300 chr1B 82.599 2994 453 39 991 3949 5694912 5697872 0.000000e+00 2580.0
26 TraesCS1A01G008300 chr1B 82.375 2905 452 32 991 3858 6281137 6284018 0.000000e+00 2473.0
27 TraesCS1A01G008300 chr1B 90.068 1611 147 8 844 2446 29951672 29950067 0.000000e+00 2076.0
28 TraesCS1A01G008300 chr1B 81.844 2429 393 33 1535 3949 8002101 7999707 0.000000e+00 1999.0
29 TraesCS1A01G008300 chr1B 84.373 2035 282 23 916 2943 7289983 7291988 0.000000e+00 1964.0
30 TraesCS1A01G008300 chr1B 80.131 1978 310 45 3670 5571 5988461 5990431 0.000000e+00 1399.0
31 TraesCS1A01G008300 chr1B 79.540 1828 283 49 3665 5416 5697390 5699202 0.000000e+00 1219.0
32 TraesCS1A01G008300 chr1B 78.889 1909 310 50 3723 5554 6485228 6483336 0.000000e+00 1206.0
33 TraesCS1A01G008300 chr1B 79.458 1772 304 40 3667 5394 5953954 5955709 0.000000e+00 1201.0
34 TraesCS1A01G008300 chr1B 78.804 1656 277 37 3950 5561 29906386 29904761 0.000000e+00 1046.0
35 TraesCS1A01G008300 chr1B 77.230 1379 241 39 4212 5543 6835114 6833762 0.000000e+00 739.0
36 TraesCS1A01G008300 chr1B 75.976 999 186 37 4602 5564 7293406 7294386 3.660000e-127 466.0
37 TraesCS1A01G008300 chr1B 74.593 984 171 40 4642 5561 5757563 5758531 6.400000e-95 359.0
38 TraesCS1A01G008300 chr1B 73.297 925 174 42 4619 5496 6039053 6039951 8.570000e-69 272.0
39 TraesCS1A01G008300 chr1B 92.157 51 4 0 5505 5555 629812296 629812346 9.330000e-09 73.1
40 TraesCS1A01G008300 chrUn 84.633 2590 375 18 999 3575 117300558 117297979 0.000000e+00 2556.0
41 TraesCS1A01G008300 chrUn 78.639 1587 279 40 3954 5508 9718896 9717338 0.000000e+00 998.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G008300 chr1A 4548923 4555630 6707 False 12388.0 12388 100.000000 1 6708 1 chr1A.!!$F1 6707
1 TraesCS1A01G008300 chr1A 5503042 5505991 2949 True 2824.0 2824 84.039000 991 3949 1 chr1A.!!$R1 2958
2 TraesCS1A01G008300 chr1A 6336816 6341263 4447 True 2078.5 2819 81.773000 991 5571 2 chr1A.!!$R5 4580
3 TraesCS1A01G008300 chr1A 6008308 6009929 1621 True 1098.0 1098 79.346000 3944 5555 1 chr1A.!!$R4 1611
4 TraesCS1A01G008300 chr1A 4500499 4506168 5669 False 1009.0 1070 79.108500 3935 5571 2 chr1A.!!$F2 1636
5 TraesCS1A01G008300 chr1A 5522794 5524474 1680 True 1009.0 1009 78.085000 3913 5562 1 chr1A.!!$R2 1649
6 TraesCS1A01G008300 chr1A 5646108 5647164 1056 True 795.0 795 80.603000 4303 5341 1 chr1A.!!$R3 1038
7 TraesCS1A01G008300 chr1D 4969605 4972429 2824 True 4671.0 4671 96.531000 1 2822 1 chr1D.!!$R2 2821
8 TraesCS1A01G008300 chr1D 3147425 3150231 2806 False 4538.0 4538 95.786000 1 2822 1 chr1D.!!$F1 2821
9 TraesCS1A01G008300 chr1D 3175885 3178713 2828 False 2760.0 2760 84.284000 909 3761 1 chr1D.!!$F2 2852
10 TraesCS1A01G008300 chr1D 5130796 5135223 4427 True 2060.5 2874 81.596500 988 5571 2 chr1D.!!$R6 4583
11 TraesCS1A01G008300 chr1D 4927759 4930143 2384 True 1876.5 2523 94.952500 2818 5242 2 chr1D.!!$R5 2424
12 TraesCS1A01G008300 chr1D 73366 77305 3939 True 1770.5 2266 81.214500 1464 5564 2 chr1D.!!$R3 4100
13 TraesCS1A01G008300 chr1D 4875814 4877199 1385 True 865.0 865 78.416000 3944 5341 1 chr1D.!!$R1 1397
14 TraesCS1A01G008300 chr1D 4918495 4921474 2979 True 678.0 1639 90.874333 5235 6708 3 chr1D.!!$R4 1473
15 TraesCS1A01G008300 chr1B 7254028 7256974 2946 True 2824.0 2824 84.007000 988 3949 1 chr1B.!!$R3 2961
16 TraesCS1A01G008300 chr1B 7634450 7637451 3001 True 2776.0 2776 83.437000 916 3949 1 chr1B.!!$R4 3033
17 TraesCS1A01G008300 chr1B 5851496 5854553 3057 False 2723.0 2723 82.938000 909 3949 1 chr1B.!!$F2 3040
18 TraesCS1A01G008300 chr1B 6281137 6284018 2881 False 2473.0 2473 82.375000 991 3858 1 chr1B.!!$F6 2867
19 TraesCS1A01G008300 chr1B 29950067 29951672 1605 True 2076.0 2076 90.068000 844 2446 1 chr1B.!!$R7 1602
20 TraesCS1A01G008300 chr1B 7999707 8002101 2394 True 1999.0 1999 81.844000 1535 3949 1 chr1B.!!$R5 2414
21 TraesCS1A01G008300 chr1B 5694912 5699202 4290 False 1899.5 2580 81.069500 991 5416 2 chr1B.!!$F8 4425
22 TraesCS1A01G008300 chr1B 5988461 5990431 1970 False 1399.0 1399 80.131000 3670 5571 1 chr1B.!!$F4 1901
23 TraesCS1A01G008300 chr1B 7289983 7294386 4403 False 1215.0 1964 80.174500 916 5564 2 chr1B.!!$F9 4648
24 TraesCS1A01G008300 chr1B 6483336 6485228 1892 True 1206.0 1206 78.889000 3723 5554 1 chr1B.!!$R1 1831
25 TraesCS1A01G008300 chr1B 5953954 5955709 1755 False 1201.0 1201 79.458000 3667 5394 1 chr1B.!!$F3 1727
26 TraesCS1A01G008300 chr1B 29904761 29906386 1625 True 1046.0 1046 78.804000 3950 5561 1 chr1B.!!$R6 1611
27 TraesCS1A01G008300 chr1B 6833762 6835114 1352 True 739.0 739 77.230000 4212 5543 1 chr1B.!!$R2 1331
28 TraesCS1A01G008300 chr1B 5757563 5758531 968 False 359.0 359 74.593000 4642 5561 1 chr1B.!!$F1 919
29 TraesCS1A01G008300 chr1B 6039053 6039951 898 False 272.0 272 73.297000 4619 5496 1 chr1B.!!$F5 877
30 TraesCS1A01G008300 chrUn 117297979 117300558 2579 True 2556.0 2556 84.633000 999 3575 1 chrUn.!!$R2 2576
31 TraesCS1A01G008300 chrUn 9717338 9718896 1558 True 998.0 998 78.639000 3954 5508 1 chrUn.!!$R1 1554

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
488 489 1.136891 TCTCATATGGGTGTCAGTGCG 59.863 52.381 1.67 0.0 0.00 5.34 F
774 776 1.219393 CCAGGAAGAACGGAGGAGC 59.781 63.158 0.00 0.0 0.00 4.70 F
1119 1149 1.339438 GGAATGGAGAAGCAGCACAGA 60.339 52.381 0.00 0.0 0.00 3.41 F
2169 2239 1.469308 ACCAAGACTAGCGTCGAAGAG 59.531 52.381 1.37 0.0 44.93 2.85 F
3528 3698 0.591170 ATTGTGGAAAGTTGACGGCG 59.409 50.000 4.80 4.8 0.00 6.46 F
3549 3719 0.112995 TGCCAGAACCATCCTTGCTT 59.887 50.000 0.00 0.0 0.00 3.91 F
3603 3773 0.255890 GCTCACCATTTCCTGCCCTA 59.744 55.000 0.00 0.0 0.00 3.53 F
3868 4296 0.323999 ATGGGATGCTGCTGCTGAAA 60.324 50.000 17.00 0.0 40.48 2.69 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
2310 2380 3.698040 GGATCAGCTTGTCCACATCAATT 59.302 43.478 8.88 0.0 34.57 2.32 R
2691 2770 6.548622 AGCTCCAGACAACATTATTGCATAAT 59.451 34.615 0.00 0.0 35.92 1.28 R
3231 3401 2.685388 TGGTTCAAAATTGTCGAGCACA 59.315 40.909 0.00 0.0 0.00 4.57 R
3549 3719 0.105964 CTCCACCACACGGTTCTTGA 59.894 55.000 0.00 0.0 46.31 3.02 R
4755 5823 0.529773 GATTCGCGGGTGATACAGCA 60.530 55.000 6.13 0.0 33.07 4.41 R
5289 6412 0.804989 GGGCATCCAGTTCTTTGTCG 59.195 55.000 0.00 0.0 0.00 4.35 R
5700 6880 1.003839 CGCAAAGCAGGTCACCCTA 60.004 57.895 0.00 0.0 39.89 3.53 R
5853 7033 2.493278 ACACAGAATACATGCCCTTTGC 59.507 45.455 0.00 0.0 41.77 3.68 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
80 81 6.094603 AGTGCAAATTGTCTCATATGTCCTTC 59.905 38.462 1.90 0.00 0.00 3.46
206 207 2.775890 CTCTTGTCTCACATGGCTGTT 58.224 47.619 0.00 0.00 31.62 3.16
441 442 7.639113 TTATATTTTTCCTGCCTACAAGTGG 57.361 36.000 0.00 0.00 0.00 4.00
488 489 1.136891 TCTCATATGGGTGTCAGTGCG 59.863 52.381 1.67 0.00 0.00 5.34
528 529 8.335532 TCACCATCTGACTAATTTAAAACCTG 57.664 34.615 0.00 0.00 0.00 4.00
583 584 9.566530 CTAGTATGTATGACTTGACATCTATGC 57.433 37.037 0.00 0.00 37.47 3.14
588 589 5.627182 ATGACTTGACATCTATGCTCCTT 57.373 39.130 0.00 0.00 0.00 3.36
620 621 7.981789 GTGATGGTAATTCTCTTGTCTCACATA 59.018 37.037 0.00 0.00 31.86 2.29
624 625 7.618117 TGGTAATTCTCTTGTCTCACATACCTA 59.382 37.037 0.00 0.00 29.66 3.08
646 647 1.533756 CGTTGCCTCACACTTGGTTTG 60.534 52.381 0.00 0.00 0.00 2.93
668 669 5.358090 TGTTTGTGTACCGTTTATGTCTGA 58.642 37.500 0.00 0.00 0.00 3.27
677 678 5.043903 ACCGTTTATGTCTGAATGATCTCG 58.956 41.667 0.00 0.00 0.00 4.04
694 695 4.102035 TCTCGATCATCATGGCTATTCG 57.898 45.455 0.00 0.00 0.00 3.34
774 776 1.219393 CCAGGAAGAACGGAGGAGC 59.781 63.158 0.00 0.00 0.00 4.70
980 990 3.277715 TCTTGTGTTCTGCATGTGTTGA 58.722 40.909 0.00 0.00 0.00 3.18
1017 1031 3.210012 AATGGCGGAGTTGGTGGCT 62.210 57.895 0.00 0.00 0.00 4.75
1119 1149 1.339438 GGAATGGAGAAGCAGCACAGA 60.339 52.381 0.00 0.00 0.00 3.41
1324 1354 2.669569 GCACCAAGCTCGGCTTCA 60.670 61.111 7.99 0.00 46.77 3.02
1340 1370 6.403049 TCGGCTTCAATGTAATCAAACTCTA 58.597 36.000 0.00 0.00 0.00 2.43
1774 1828 6.267471 AGTTGAAGCATCTCCCAACAAAAATA 59.733 34.615 0.00 0.00 40.77 1.40
2068 2138 3.394719 GAGAAAGAAAAGCCTGTCGAGT 58.605 45.455 0.00 0.00 0.00 4.18
2169 2239 1.469308 ACCAAGACTAGCGTCGAAGAG 59.531 52.381 1.37 0.00 44.93 2.85
2310 2380 7.014711 TGTGCTGTATTTCCAAAGGATTACAAA 59.985 33.333 9.32 1.94 33.43 2.83
2378 2448 3.181329 TCCCAGAGCACAAGGAAGATAA 58.819 45.455 0.00 0.00 0.00 1.75
2613 2692 6.979238 AGTGGCTTTTAGATAATACTCGTCAC 59.021 38.462 0.00 0.00 0.00 3.67
2674 2753 6.678568 ATCATTCTATGGAGAAACGATCCT 57.321 37.500 0.00 0.00 44.85 3.24
2691 2770 4.038042 CGATCCTCTGCTATCCAAACACTA 59.962 45.833 0.00 0.00 0.00 2.74
3055 3221 5.067153 ACACTTACATGTTTTGTAGCAGCAA 59.933 36.000 2.30 0.00 41.72 3.91
3220 3390 8.779354 ACTGACTTTAAGATGGAGTTATGTTC 57.221 34.615 0.00 0.00 0.00 3.18
3231 3401 3.270877 GAGTTATGTTCGGGACAGCAAT 58.729 45.455 0.00 0.00 42.62 3.56
3304 3474 1.492176 CCTATGGAGGCAAGTGGATGT 59.508 52.381 0.00 0.00 35.54 3.06
3355 3525 8.640651 TCCATCTTTTTCATTGTGAAAGATTGA 58.359 29.630 18.54 17.80 45.77 2.57
3369 3539 7.545265 TGTGAAAGATTGAAAGTTTTGTTCAGG 59.455 33.333 0.00 0.00 36.41 3.86
3393 3563 4.104102 TGTGGTACATCCTTCAGTTTTCCT 59.896 41.667 0.00 0.00 44.52 3.36
3470 3640 4.978099 AGAAATGAGAGGCAAGAAGAACA 58.022 39.130 0.00 0.00 0.00 3.18
3472 3642 5.829924 AGAAATGAGAGGCAAGAAGAACAAA 59.170 36.000 0.00 0.00 0.00 2.83
3473 3643 6.492772 AGAAATGAGAGGCAAGAAGAACAAAT 59.507 34.615 0.00 0.00 0.00 2.32
3474 3644 7.667219 AGAAATGAGAGGCAAGAAGAACAAATA 59.333 33.333 0.00 0.00 0.00 1.40
3475 3645 7.765695 AATGAGAGGCAAGAAGAACAAATAA 57.234 32.000 0.00 0.00 0.00 1.40
3476 3646 7.951347 ATGAGAGGCAAGAAGAACAAATAAT 57.049 32.000 0.00 0.00 0.00 1.28
3484 3654 9.305925 GGCAAGAAGAACAAATAATATTTCCTG 57.694 33.333 0.00 0.00 0.00 3.86
3492 3662 9.807649 GAACAAATAATATTTCCTGTGCTTGAT 57.192 29.630 0.00 0.00 0.00 2.57
3526 3696 6.548441 TTAAGTATTGTGGAAAGTTGACGG 57.452 37.500 0.00 0.00 0.00 4.79
3527 3697 2.812011 AGTATTGTGGAAAGTTGACGGC 59.188 45.455 0.00 0.00 0.00 5.68
3528 3698 0.591170 ATTGTGGAAAGTTGACGGCG 59.409 50.000 4.80 4.80 0.00 6.46
3529 3699 2.054140 TTGTGGAAAGTTGACGGCGC 62.054 55.000 6.90 0.00 0.00 6.53
3530 3700 2.110213 TGGAAAGTTGACGGCGCT 59.890 55.556 6.90 0.00 0.00 5.92
3531 3701 2.250939 TGGAAAGTTGACGGCGCTG 61.251 57.895 16.39 16.39 0.00 5.18
3532 3702 2.127232 GAAAGTTGACGGCGCTGC 60.127 61.111 18.15 10.02 0.00 5.25
3533 3703 3.595108 GAAAGTTGACGGCGCTGCC 62.595 63.158 18.15 5.64 46.75 4.85
3543 3713 3.512516 GCGCTGCCAGAACCATCC 61.513 66.667 0.00 0.00 0.00 3.51
3544 3714 2.270205 CGCTGCCAGAACCATCCT 59.730 61.111 0.00 0.00 0.00 3.24
3545 3715 1.377725 CGCTGCCAGAACCATCCTT 60.378 57.895 0.00 0.00 0.00 3.36
3546 3716 1.651240 CGCTGCCAGAACCATCCTTG 61.651 60.000 0.00 0.00 0.00 3.61
3547 3717 1.941999 GCTGCCAGAACCATCCTTGC 61.942 60.000 0.00 0.00 0.00 4.01
3548 3718 0.323178 CTGCCAGAACCATCCTTGCT 60.323 55.000 0.00 0.00 0.00 3.91
3549 3719 0.112995 TGCCAGAACCATCCTTGCTT 59.887 50.000 0.00 0.00 0.00 3.91
3550 3720 0.813821 GCCAGAACCATCCTTGCTTC 59.186 55.000 0.00 0.00 0.00 3.86
3551 3721 1.887956 GCCAGAACCATCCTTGCTTCA 60.888 52.381 0.00 0.00 0.00 3.02
3552 3722 2.517959 CCAGAACCATCCTTGCTTCAA 58.482 47.619 0.00 0.00 0.00 2.69
3553 3723 2.490903 CCAGAACCATCCTTGCTTCAAG 59.509 50.000 0.00 0.00 40.75 3.02
3554 3724 3.415212 CAGAACCATCCTTGCTTCAAGA 58.585 45.455 8.04 0.00 43.42 3.02
3555 3725 3.822735 CAGAACCATCCTTGCTTCAAGAA 59.177 43.478 8.04 0.00 43.42 2.52
3556 3726 3.823304 AGAACCATCCTTGCTTCAAGAAC 59.177 43.478 8.04 0.00 43.42 3.01
3557 3727 2.519013 ACCATCCTTGCTTCAAGAACC 58.481 47.619 8.04 0.00 43.42 3.62
3558 3728 1.470098 CCATCCTTGCTTCAAGAACCG 59.530 52.381 8.04 0.00 43.42 4.44
3559 3729 2.154462 CATCCTTGCTTCAAGAACCGT 58.846 47.619 8.04 0.00 43.42 4.83
3560 3730 1.593196 TCCTTGCTTCAAGAACCGTG 58.407 50.000 8.04 0.00 43.42 4.94
3561 3731 1.134220 TCCTTGCTTCAAGAACCGTGT 60.134 47.619 8.04 0.00 43.42 4.49
3562 3732 1.002468 CCTTGCTTCAAGAACCGTGTG 60.002 52.381 8.04 0.00 43.42 3.82
3563 3733 1.002468 CTTGCTTCAAGAACCGTGTGG 60.002 52.381 0.50 0.00 43.42 4.17
3564 3734 3.578150 CTTGCTTCAAGAACCGTGTGGT 61.578 50.000 0.50 0.00 43.42 4.16
3565 3735 5.618598 CTTGCTTCAAGAACCGTGTGGTG 62.619 52.174 0.50 0.00 44.82 4.17
3575 3745 2.596904 CCGTGTGGTGGAGGTTATAG 57.403 55.000 0.00 0.00 0.00 1.31
3576 3746 1.138266 CCGTGTGGTGGAGGTTATAGG 59.862 57.143 0.00 0.00 0.00 2.57
3577 3747 1.829222 CGTGTGGTGGAGGTTATAGGT 59.171 52.381 0.00 0.00 0.00 3.08
3578 3748 2.235402 CGTGTGGTGGAGGTTATAGGTT 59.765 50.000 0.00 0.00 0.00 3.50
3579 3749 3.606687 GTGTGGTGGAGGTTATAGGTTG 58.393 50.000 0.00 0.00 0.00 3.77
3580 3750 2.574369 TGTGGTGGAGGTTATAGGTTGG 59.426 50.000 0.00 0.00 0.00 3.77
3581 3751 2.574824 GTGGTGGAGGTTATAGGTTGGT 59.425 50.000 0.00 0.00 0.00 3.67
3582 3752 3.776417 GTGGTGGAGGTTATAGGTTGGTA 59.224 47.826 0.00 0.00 0.00 3.25
3583 3753 3.776417 TGGTGGAGGTTATAGGTTGGTAC 59.224 47.826 0.00 0.00 0.00 3.34
3584 3754 3.181472 GGTGGAGGTTATAGGTTGGTACG 60.181 52.174 0.00 0.00 0.00 3.67
3585 3755 2.431782 TGGAGGTTATAGGTTGGTACGC 59.568 50.000 0.00 0.00 0.00 4.42
3586 3756 2.697229 GGAGGTTATAGGTTGGTACGCT 59.303 50.000 0.00 0.00 0.00 5.07
3587 3757 3.243670 GGAGGTTATAGGTTGGTACGCTC 60.244 52.174 0.00 0.00 0.00 5.03
3588 3758 3.368248 AGGTTATAGGTTGGTACGCTCA 58.632 45.455 0.00 0.00 0.00 4.26
3589 3759 3.131755 AGGTTATAGGTTGGTACGCTCAC 59.868 47.826 0.00 0.00 0.00 3.51
3590 3760 3.451526 GTTATAGGTTGGTACGCTCACC 58.548 50.000 0.00 0.00 39.20 4.02
3591 3761 1.563924 ATAGGTTGGTACGCTCACCA 58.436 50.000 2.34 2.34 46.97 4.17
3596 3766 3.543884 TGGTACGCTCACCATTTCC 57.456 52.632 2.34 0.00 43.76 3.13
3597 3767 0.981183 TGGTACGCTCACCATTTCCT 59.019 50.000 2.34 0.00 43.76 3.36
3598 3768 1.338674 TGGTACGCTCACCATTTCCTG 60.339 52.381 2.34 0.00 43.76 3.86
3599 3769 0.727398 GTACGCTCACCATTTCCTGC 59.273 55.000 0.00 0.00 0.00 4.85
3600 3770 0.392461 TACGCTCACCATTTCCTGCC 60.392 55.000 0.00 0.00 0.00 4.85
3601 3771 2.409870 CGCTCACCATTTCCTGCCC 61.410 63.158 0.00 0.00 0.00 5.36
3602 3772 1.000396 GCTCACCATTTCCTGCCCT 60.000 57.895 0.00 0.00 0.00 5.19
3603 3773 0.255890 GCTCACCATTTCCTGCCCTA 59.744 55.000 0.00 0.00 0.00 3.53
3604 3774 1.340991 GCTCACCATTTCCTGCCCTAA 60.341 52.381 0.00 0.00 0.00 2.69
3605 3775 2.883888 GCTCACCATTTCCTGCCCTAAA 60.884 50.000 0.00 0.00 0.00 1.85
3606 3776 3.019564 CTCACCATTTCCTGCCCTAAAG 58.980 50.000 0.00 0.00 0.00 1.85
3607 3777 2.102578 CACCATTTCCTGCCCTAAAGG 58.897 52.381 0.00 0.00 39.47 3.11
3608 3778 1.716503 ACCATTTCCTGCCCTAAAGGT 59.283 47.619 0.00 0.00 38.26 3.50
3609 3779 2.923629 ACCATTTCCTGCCCTAAAGGTA 59.076 45.455 0.00 0.00 38.26 3.08
3610 3780 3.288092 CCATTTCCTGCCCTAAAGGTAC 58.712 50.000 0.00 0.00 38.26 3.34
3628 3798 6.345096 AGGTACTTGAATTGGACAATTTGG 57.655 37.500 11.20 7.55 36.77 3.28
3629 3799 6.074648 AGGTACTTGAATTGGACAATTTGGA 58.925 36.000 11.20 0.81 36.77 3.53
3630 3800 6.209391 AGGTACTTGAATTGGACAATTTGGAG 59.791 38.462 11.20 11.20 36.77 3.86
3631 3801 6.208599 GGTACTTGAATTGGACAATTTGGAGA 59.791 38.462 11.20 0.00 40.77 3.71
3632 3802 6.336842 ACTTGAATTGGACAATTTGGAGAG 57.663 37.500 11.20 7.93 40.77 3.20
3633 3803 4.789012 TGAATTGGACAATTTGGAGAGC 57.211 40.909 11.20 0.00 40.77 4.09
3634 3804 4.410099 TGAATTGGACAATTTGGAGAGCT 58.590 39.130 11.20 0.00 40.77 4.09
3635 3805 4.834496 TGAATTGGACAATTTGGAGAGCTT 59.166 37.500 11.20 0.00 40.77 3.74
3636 3806 5.047802 TGAATTGGACAATTTGGAGAGCTTC 60.048 40.000 11.20 0.00 40.77 3.86
3637 3807 2.795329 TGGACAATTTGGAGAGCTTCC 58.205 47.619 0.78 7.71 46.98 3.46
3646 3816 1.786937 GGAGAGCTTCCAGAGATGGA 58.213 55.000 9.31 0.00 46.01 3.41
3647 3817 2.114616 GGAGAGCTTCCAGAGATGGAA 58.885 52.381 9.26 9.26 46.01 3.53
3648 3818 2.705127 GGAGAGCTTCCAGAGATGGAAT 59.295 50.000 10.00 0.00 45.80 3.01
3649 3819 3.494749 GGAGAGCTTCCAGAGATGGAATG 60.495 52.174 10.00 6.24 45.80 2.67
3650 3820 2.158784 AGAGCTTCCAGAGATGGAATGC 60.159 50.000 10.00 14.14 45.80 3.56
3651 3821 1.562942 AGCTTCCAGAGATGGAATGCA 59.437 47.619 22.08 0.00 45.80 3.96
3652 3822 1.948145 GCTTCCAGAGATGGAATGCAG 59.052 52.381 18.35 7.56 45.80 4.41
3653 3823 2.683152 GCTTCCAGAGATGGAATGCAGT 60.683 50.000 18.35 0.00 45.80 4.40
3654 3824 3.618351 CTTCCAGAGATGGAATGCAGTT 58.382 45.455 10.00 0.00 45.80 3.16
3655 3825 2.995283 TCCAGAGATGGAATGCAGTTG 58.005 47.619 0.00 0.00 34.56 3.16
3656 3826 2.573009 TCCAGAGATGGAATGCAGTTGA 59.427 45.455 0.00 0.00 34.56 3.18
3657 3827 3.009363 TCCAGAGATGGAATGCAGTTGAA 59.991 43.478 0.00 0.00 34.56 2.69
3658 3828 3.377485 CCAGAGATGGAATGCAGTTGAAG 59.623 47.826 0.00 0.00 0.00 3.02
3659 3829 4.259356 CAGAGATGGAATGCAGTTGAAGA 58.741 43.478 0.00 0.00 0.00 2.87
3660 3830 4.333095 CAGAGATGGAATGCAGTTGAAGAG 59.667 45.833 0.00 0.00 0.00 2.85
3661 3831 4.019501 AGAGATGGAATGCAGTTGAAGAGT 60.020 41.667 0.00 0.00 0.00 3.24
3662 3832 4.260170 AGATGGAATGCAGTTGAAGAGTC 58.740 43.478 0.00 0.00 0.00 3.36
3663 3833 3.777106 TGGAATGCAGTTGAAGAGTCT 57.223 42.857 0.00 0.00 0.00 3.24
3664 3834 3.668447 TGGAATGCAGTTGAAGAGTCTC 58.332 45.455 0.00 0.00 0.00 3.36
3665 3835 3.071457 TGGAATGCAGTTGAAGAGTCTCA 59.929 43.478 1.94 0.00 0.00 3.27
3668 3838 3.117491 TGCAGTTGAAGAGTCTCAAGG 57.883 47.619 1.94 0.00 36.01 3.61
3679 3849 6.894654 TGAAGAGTCTCAAGGAGAACAGATAT 59.105 38.462 1.94 0.00 40.59 1.63
3681 3851 7.111247 AGAGTCTCAAGGAGAACAGATATTG 57.889 40.000 1.94 0.00 40.59 1.90
3727 4155 8.641498 AATAATTCAGAAATGTCCAGAGTTGT 57.359 30.769 0.00 0.00 0.00 3.32
3738 4166 4.041075 TGTCCAGAGTTGTTAGCATTACCA 59.959 41.667 0.00 0.00 0.00 3.25
3762 4190 1.666888 GCACCATTGCTTCAAGAACCG 60.667 52.381 0.00 0.00 46.17 4.44
3765 4193 1.666888 CCATTGCTTCAAGAACCGTGC 60.667 52.381 0.00 0.00 0.00 5.34
3768 4196 0.463654 TGCTTCAAGAACCGTGCAGT 60.464 50.000 0.00 0.00 0.00 4.40
3789 4217 4.164221 AGTGGAGGTGGTTATAGATTGGTG 59.836 45.833 0.00 0.00 0.00 4.17
3817 4245 1.271163 CGTTTCCTGCCCTAAAGGTGA 60.271 52.381 0.00 0.00 38.26 4.02
3868 4296 0.323999 ATGGGATGCTGCTGCTGAAA 60.324 50.000 17.00 0.00 40.48 2.69
3869 4297 0.963856 TGGGATGCTGCTGCTGAAAG 60.964 55.000 17.00 0.00 40.48 2.62
3870 4298 0.679002 GGGATGCTGCTGCTGAAAGA 60.679 55.000 17.00 0.00 40.48 2.52
3871 4299 0.733729 GGATGCTGCTGCTGAAAGAG 59.266 55.000 17.00 0.00 40.48 2.85
3872 4300 1.678123 GGATGCTGCTGCTGAAAGAGA 60.678 52.381 17.00 0.00 40.48 3.10
3873 4301 2.082231 GATGCTGCTGCTGAAAGAGAA 58.918 47.619 17.00 0.00 40.48 2.87
3874 4302 2.195741 TGCTGCTGCTGAAAGAGAAT 57.804 45.000 17.00 0.00 40.48 2.40
3875 4303 3.339253 TGCTGCTGCTGAAAGAGAATA 57.661 42.857 17.00 0.00 40.48 1.75
3876 4304 3.882444 TGCTGCTGCTGAAAGAGAATAT 58.118 40.909 17.00 0.00 40.48 1.28
3877 4305 5.027293 TGCTGCTGCTGAAAGAGAATATA 57.973 39.130 17.00 0.00 40.48 0.86
3878 4306 5.618236 TGCTGCTGCTGAAAGAGAATATAT 58.382 37.500 17.00 0.00 40.48 0.86
3879 4307 6.762333 TGCTGCTGCTGAAAGAGAATATATA 58.238 36.000 17.00 0.00 40.48 0.86
3880 4308 6.648310 TGCTGCTGCTGAAAGAGAATATATAC 59.352 38.462 17.00 0.00 40.48 1.47
3881 4309 6.873076 GCTGCTGCTGAAAGAGAATATATACT 59.127 38.462 10.92 0.00 34.07 2.12
3882 4310 7.148606 GCTGCTGCTGAAAGAGAATATATACTG 60.149 40.741 10.92 0.00 34.07 2.74
3883 4311 7.730084 TGCTGCTGAAAGAGAATATATACTGT 58.270 34.615 0.00 0.00 34.07 3.55
3884 4312 8.206867 TGCTGCTGAAAGAGAATATATACTGTT 58.793 33.333 0.00 0.00 34.07 3.16
3885 4313 9.050601 GCTGCTGAAAGAGAATATATACTGTTT 57.949 33.333 0.00 0.00 34.07 2.83
3887 4315 9.547753 TGCTGAAAGAGAATATATACTGTTTCC 57.452 33.333 14.98 6.49 42.03 3.13
3888 4316 9.771534 GCTGAAAGAGAATATATACTGTTTCCT 57.228 33.333 14.98 2.14 42.03 3.36
3896 4324 9.905713 AGAATATATACTGTTTCCTTTGCTTGA 57.094 29.630 0.00 0.00 0.00 3.02
3898 4326 8.682936 ATATATACTGTTTCCTTTGCTTGAGG 57.317 34.615 0.00 0.00 35.53 3.86
3899 4327 3.297134 ACTGTTTCCTTTGCTTGAGGA 57.703 42.857 0.02 0.02 41.46 3.71
3906 4334 4.222124 TCCTTTGCTTGAGGAACTATCC 57.778 45.455 1.51 0.00 46.98 2.59
3924 4352 4.748277 ATCCATTCAGAAATGCCCAAAG 57.252 40.909 0.00 0.00 40.85 2.77
3925 4353 3.509442 TCCATTCAGAAATGCCCAAAGT 58.491 40.909 0.00 0.00 40.85 2.66
3926 4354 3.903090 TCCATTCAGAAATGCCCAAAGTT 59.097 39.130 0.00 0.00 40.85 2.66
3927 4355 3.998341 CCATTCAGAAATGCCCAAAGTTG 59.002 43.478 0.00 0.00 40.85 3.16
3932 4360 4.706476 TCAGAAATGCCCAAAGTTGATAGG 59.294 41.667 0.00 0.00 0.00 2.57
3939 4367 2.233676 CCCAAAGTTGATAGGTTTGCCC 59.766 50.000 0.00 0.00 34.57 5.36
3942 4370 2.403252 AGTTGATAGGTTTGCCCGAG 57.597 50.000 0.00 0.00 38.74 4.63
4102 4935 2.586425 TGTTTCCCCAGCTTGAGAAAG 58.414 47.619 0.00 0.00 0.00 2.62
4268 5302 5.300752 AGAGTACACAGAAACAACATCAGG 58.699 41.667 0.00 0.00 0.00 3.86
4375 5415 3.499338 TGCAACTCATTCTTTGGACCAT 58.501 40.909 0.00 0.00 0.00 3.55
4388 5428 0.539051 GGACCATGTGCACTAGAGCT 59.461 55.000 19.41 0.00 34.99 4.09
4544 5584 1.048724 TATGGACCGCCTCTTCCTGG 61.049 60.000 0.00 0.00 32.55 4.45
4768 5851 2.167219 CGCACTGCTGTATCACCCG 61.167 63.158 0.00 0.00 0.00 5.28
4879 5962 4.133078 GACCATCTTTATTGCTAGCTGCT 58.867 43.478 17.23 7.57 43.37 4.24
4965 6075 2.804527 CAATGTACCAGAGCCATCATCG 59.195 50.000 0.00 0.00 0.00 3.84
5092 6211 6.594159 GGAACTGTGCATTAGTAGTAACATGT 59.406 38.462 6.96 0.00 0.00 3.21
5172 6292 2.746472 GCTTCATAGATGCGGAACCCTT 60.746 50.000 0.00 0.00 0.00 3.95
5289 6412 1.080298 GCAACTGGGCAGCATTGAC 60.080 57.895 0.00 0.00 0.00 3.18
5497 6677 5.546526 TCACTTGTGATATGTGCAGTAACA 58.453 37.500 0.00 0.00 35.15 2.41
5592 6772 5.220739 CCGAAATTGGTGATCAGTCATCTTC 60.221 44.000 0.00 3.67 36.40 2.87
5625 6805 7.658982 TGCATTTACTTCAGATGTATCAGATCC 59.341 37.037 0.00 0.00 0.00 3.36
5668 6848 4.808414 TGACTATTCACTTGTGCTAGCT 57.192 40.909 17.23 0.00 0.00 3.32
5700 6880 2.647802 AGTTGTTTGGGGCCTATAGTGT 59.352 45.455 0.84 0.00 0.00 3.55
5766 6946 0.039180 TCCGAGGCTGAGACAACCTA 59.961 55.000 0.00 0.00 29.19 3.08
5841 7021 1.211212 GTTAACCGGGGTAAGCAGGAT 59.789 52.381 4.38 0.00 0.00 3.24
5853 7033 5.170748 GGTAAGCAGGATGAAAACCAAATG 58.829 41.667 0.00 0.00 39.69 2.32
5854 7034 3.323751 AGCAGGATGAAAACCAAATGC 57.676 42.857 0.00 0.00 39.69 3.56
5907 7087 9.507329 AATAATTTACTACTAGGCCATGTCATG 57.493 33.333 5.01 5.79 0.00 3.07
5966 7146 8.317679 ACATTATCTTCTTCAGACTTACAGCTT 58.682 33.333 0.00 0.00 32.83 3.74
5983 7163 8.807667 TTACAGCTTCTTGTAGTGTAAACTAC 57.192 34.615 15.31 15.31 42.05 2.73
6001 7181 9.634163 GTAAACTACACAATTTATTTCCTTGGG 57.366 33.333 0.00 0.00 0.00 4.12
6002 7182 8.485578 AAACTACACAATTTATTTCCTTGGGA 57.514 30.769 0.00 0.00 0.00 4.37
6003 7183 7.462571 ACTACACAATTTATTTCCTTGGGAC 57.537 36.000 0.00 0.00 0.00 4.46
6004 7184 7.007723 ACTACACAATTTATTTCCTTGGGACA 58.992 34.615 0.00 0.00 0.00 4.02
6022 7202 5.373812 GGACAATTCCCAGATTTAGGAGA 57.626 43.478 0.00 0.00 35.57 3.71
6023 7203 5.755849 GGACAATTCCCAGATTTAGGAGAA 58.244 41.667 0.00 0.00 35.57 2.87
6024 7204 5.825151 GGACAATTCCCAGATTTAGGAGAAG 59.175 44.000 0.00 0.00 35.57 2.85
6025 7205 5.196695 ACAATTCCCAGATTTAGGAGAAGC 58.803 41.667 0.00 0.00 32.57 3.86
6026 7206 5.044550 ACAATTCCCAGATTTAGGAGAAGCT 60.045 40.000 0.00 0.00 32.57 3.74
6027 7207 5.723860 ATTCCCAGATTTAGGAGAAGCTT 57.276 39.130 0.00 0.00 32.57 3.74
6028 7208 6.831664 ATTCCCAGATTTAGGAGAAGCTTA 57.168 37.500 0.00 0.00 32.57 3.09
6029 7209 5.878406 TCCCAGATTTAGGAGAAGCTTAG 57.122 43.478 0.00 0.00 0.00 2.18
6044 7224 2.949644 AGCTTAGTTTGTTCCAGCGTTT 59.050 40.909 0.00 0.00 35.53 3.60
6045 7225 3.042887 GCTTAGTTTGTTCCAGCGTTTG 58.957 45.455 0.00 0.00 0.00 2.93
6046 7226 3.488553 GCTTAGTTTGTTCCAGCGTTTGT 60.489 43.478 0.00 0.00 0.00 2.83
6059 7239 5.585445 TCCAGCGTTTGTTACTTAGTTTCAA 59.415 36.000 0.00 0.00 0.00 2.69
6122 7302 5.656480 TGCTTTTCCAGGTTAAGTGAAAAC 58.344 37.500 0.00 0.00 34.18 2.43
6138 7318 0.107410 AAACCTCAGGCGTGTGAACA 60.107 50.000 9.88 0.00 0.00 3.18
6160 7340 9.220767 GAACATTCTAGTCCTGTTTGACTAAAT 57.779 33.333 2.88 3.76 44.83 1.40
6234 7414 1.396185 AGGTGGGCTGGACCTCATA 59.604 57.895 0.00 0.00 39.89 2.15
6266 7446 8.786826 TTATGCCATAGTAATAGCCATGTTAC 57.213 34.615 0.00 0.00 34.24 2.50
6306 7486 2.498167 GAGACAACTCCAACACTGCAT 58.502 47.619 0.00 0.00 37.19 3.96
6317 7497 0.952497 ACACTGCATCACCGAAGCTG 60.952 55.000 0.00 0.00 32.94 4.24
6347 7535 3.730761 GCAGCAGGTGTGGCTTCG 61.731 66.667 0.66 0.00 40.23 3.79
6373 7561 2.300152 GTCATGTCAGTCAGTTGGAGGA 59.700 50.000 0.00 0.00 0.00 3.71
6376 7564 3.194005 TGTCAGTCAGTTGGAGGAAAC 57.806 47.619 0.00 0.00 0.00 2.78
6377 7565 2.158813 TGTCAGTCAGTTGGAGGAAACC 60.159 50.000 0.00 0.00 0.00 3.27
6379 7567 2.158813 TCAGTCAGTTGGAGGAAACCAC 60.159 50.000 0.00 0.00 39.85 4.16
6380 7568 2.127708 AGTCAGTTGGAGGAAACCACT 58.872 47.619 0.00 0.00 39.85 4.00
6381 7569 2.104963 AGTCAGTTGGAGGAAACCACTC 59.895 50.000 0.00 0.00 39.85 3.51
6382 7570 1.070134 TCAGTTGGAGGAAACCACTCG 59.930 52.381 0.00 0.00 39.85 4.18
6383 7571 0.396811 AGTTGGAGGAAACCACTCGG 59.603 55.000 0.00 0.00 39.85 4.63
6384 7572 1.072505 TTGGAGGAAACCACTCGGC 59.927 57.895 0.00 0.00 39.85 5.54
6386 7574 1.375326 GGAGGAAACCACTCGGCTT 59.625 57.895 0.00 0.00 35.82 4.35
6387 7575 0.250770 GGAGGAAACCACTCGGCTTT 60.251 55.000 0.00 0.00 35.82 3.51
6388 7576 0.875059 GAGGAAACCACTCGGCTTTG 59.125 55.000 0.00 0.00 34.57 2.77
6389 7577 0.182775 AGGAAACCACTCGGCTTTGT 59.817 50.000 0.00 0.00 34.57 2.83
6390 7578 0.591659 GGAAACCACTCGGCTTTGTC 59.408 55.000 0.00 0.00 34.57 3.18
6391 7579 0.591659 GAAACCACTCGGCTTTGTCC 59.408 55.000 0.00 0.00 34.57 4.02
6399 7587 4.475527 GGCTTTGTCCGAGTGGTT 57.524 55.556 0.00 0.00 36.30 3.67
6400 7588 2.715536 GGCTTTGTCCGAGTGGTTT 58.284 52.632 0.00 0.00 36.30 3.27
6401 7589 1.029681 GGCTTTGTCCGAGTGGTTTT 58.970 50.000 0.00 0.00 36.30 2.43
6402 7590 1.269051 GGCTTTGTCCGAGTGGTTTTG 60.269 52.381 0.00 0.00 36.30 2.44
6403 7591 1.673920 GCTTTGTCCGAGTGGTTTTGA 59.326 47.619 0.00 0.00 36.30 2.69
6404 7592 2.287009 GCTTTGTCCGAGTGGTTTTGAG 60.287 50.000 0.00 0.00 36.30 3.02
6405 7593 1.961793 TTGTCCGAGTGGTTTTGAGG 58.038 50.000 0.00 0.00 36.30 3.86
6450 8113 2.424246 TCTTTGTCCGTGTGGTTTTTCC 59.576 45.455 0.00 0.00 36.30 3.13
6453 8116 0.666374 GTCCGTGTGGTTTTTCCTGG 59.334 55.000 0.00 0.00 37.07 4.45
6455 8118 1.362355 CGTGTGGTTTTTCCTGGGC 59.638 57.895 0.00 0.00 37.07 5.36
6457 8120 0.827368 GTGTGGTTTTTCCTGGGCAA 59.173 50.000 0.00 0.00 37.07 4.52
6462 8125 5.128663 GTGTGGTTTTTCCTGGGCAATATAT 59.871 40.000 0.00 0.00 37.07 0.86
6479 8142 6.156429 GCAATATATACCCAGTAGTTAGCCCT 59.844 42.308 0.00 0.00 0.00 5.19
6510 8173 2.372172 ACCCAAGACTGAAGTGTTAGGG 59.628 50.000 18.15 18.15 41.19 3.53
6533 8423 5.575995 GGGATCGTTACTAGTTCAAACTGAC 59.424 44.000 0.00 0.00 40.07 3.51
6541 8431 9.204570 GTTACTAGTTCAAACTGACACATATGT 57.795 33.333 1.41 1.41 40.20 2.29
6553 8443 4.115516 GACACATATGTAGACTGTGCTGG 58.884 47.826 8.32 0.00 43.13 4.85
6609 11232 4.267690 TGACGTCGATGCTTGTTGATATTC 59.732 41.667 11.62 0.00 0.00 1.75
6632 11255 3.262420 GGCTCTCTTTGCGTTGAGATTA 58.738 45.455 3.43 0.00 38.46 1.75
6633 11256 3.684788 GGCTCTCTTTGCGTTGAGATTAA 59.315 43.478 3.43 0.00 38.46 1.40
6634 11257 4.333926 GGCTCTCTTTGCGTTGAGATTAAT 59.666 41.667 3.43 0.00 38.46 1.40
6635 11258 5.163713 GGCTCTCTTTGCGTTGAGATTAATT 60.164 40.000 3.43 0.00 38.46 1.40
6636 11259 6.037172 GGCTCTCTTTGCGTTGAGATTAATTA 59.963 38.462 3.43 0.00 38.46 1.40
6638 11261 8.125448 GCTCTCTTTGCGTTGAGATTAATTAAT 58.875 33.333 10.51 10.51 38.46 1.40
6639 11262 9.994432 CTCTCTTTGCGTTGAGATTAATTAATT 57.006 29.630 11.92 5.89 38.46 1.40
6677 11392 2.224378 CCATGTAGATGTTGGGAGCGAT 60.224 50.000 0.00 0.00 0.00 4.58
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
206 207 1.257750 ATGGCTACACCGAGACAGCA 61.258 55.000 0.00 0.00 38.07 4.41
427 428 0.254178 AGCATCCACTTGTAGGCAGG 59.746 55.000 0.00 0.00 0.00 4.85
434 435 3.896888 TCAATTCCAAAGCATCCACTTGT 59.103 39.130 0.00 0.00 0.00 3.16
441 442 3.916761 TGCACTTCAATTCCAAAGCATC 58.083 40.909 0.00 0.00 0.00 3.91
488 489 1.291132 GGTGAGATGGCTAAAGCGAC 58.709 55.000 0.00 0.00 43.26 5.19
570 571 4.639310 AGCAAAAGGAGCATAGATGTCAAG 59.361 41.667 0.00 0.00 0.00 3.02
581 582 1.250328 CCATCACAGCAAAAGGAGCA 58.750 50.000 0.00 0.00 0.00 4.26
583 584 5.416952 AGAATTACCATCACAGCAAAAGGAG 59.583 40.000 0.00 0.00 0.00 3.69
588 589 5.769662 ACAAGAGAATTACCATCACAGCAAA 59.230 36.000 0.00 0.00 0.00 3.68
620 621 1.267121 AGTGTGAGGCAACGATAGGT 58.733 50.000 0.00 0.00 46.39 3.08
624 625 0.108585 ACCAAGTGTGAGGCAACGAT 59.891 50.000 0.00 0.00 46.39 3.73
646 647 5.910637 TCAGACATAAACGGTACACAAAC 57.089 39.130 0.00 0.00 0.00 2.93
677 678 6.492007 ACAATTCGAATAGCCATGATGATC 57.508 37.500 11.83 0.00 0.00 2.92
685 686 7.606456 AGAAACTAGAAACAATTCGAATAGCCA 59.394 33.333 11.83 0.00 40.63 4.75
689 690 9.630098 ACGTAGAAACTAGAAACAATTCGAATA 57.370 29.630 11.83 0.00 40.63 1.75
694 695 9.712359 AACAAACGTAGAAACTAGAAACAATTC 57.288 29.630 0.00 0.00 35.70 2.17
757 759 1.153745 CGCTCCTCCGTTCTTCCTG 60.154 63.158 0.00 0.00 0.00 3.86
759 761 1.446272 CACGCTCCTCCGTTCTTCC 60.446 63.158 0.00 0.00 39.83 3.46
813 816 5.345741 ACAATGCGCACTTCAATTACAAATC 59.654 36.000 14.90 0.00 0.00 2.17
910 913 2.999355 GAGAAGAGAATGGTGTGCAGAC 59.001 50.000 5.20 5.20 0.00 3.51
980 990 2.606519 TAACGCTCACAGCCCCCT 60.607 61.111 0.00 0.00 38.18 4.79
1119 1149 2.622942 TGGAAGCTTGCGTTTGAGAATT 59.377 40.909 13.65 0.00 0.00 2.17
1324 1354 8.258708 GTGAGTAGGGTAGAGTTTGATTACATT 58.741 37.037 0.00 0.00 0.00 2.71
1774 1828 4.985538 AGTGGTGGTTTGTCTGTATCATT 58.014 39.130 0.00 0.00 0.00 2.57
2068 2138 6.660521 ACAATCTCATCAACCATCTTGCTTAA 59.339 34.615 0.00 0.00 0.00 1.85
2169 2239 6.071108 TGCTTCTAGATGATATAGCCTTCCAC 60.071 42.308 9.72 0.00 0.00 4.02
2310 2380 3.698040 GGATCAGCTTGTCCACATCAATT 59.302 43.478 8.88 0.00 34.57 2.32
2674 2753 6.591001 TGCATAATAGTGTTTGGATAGCAGA 58.409 36.000 0.00 0.00 0.00 4.26
2691 2770 6.548622 AGCTCCAGACAACATTATTGCATAAT 59.451 34.615 0.00 0.00 35.92 1.28
3231 3401 2.685388 TGGTTCAAAATTGTCGAGCACA 59.315 40.909 0.00 0.00 0.00 4.57
3324 3494 4.081531 TCACAATGAAAAAGATGGATGGCC 60.082 41.667 0.00 0.00 0.00 5.36
3355 3525 4.767928 TGTACCACACCTGAACAAAACTTT 59.232 37.500 0.00 0.00 0.00 2.66
3369 3539 4.215613 GGAAAACTGAAGGATGTACCACAC 59.784 45.833 0.00 0.00 42.04 3.82
3393 3563 4.464951 TCCAGCGTAATCTCCTTCAGTTTA 59.535 41.667 0.00 0.00 0.00 2.01
3473 3643 9.461312 ACAACTTATCAAGCACAGGAAATATTA 57.539 29.630 0.00 0.00 0.00 0.98
3474 3644 8.353423 ACAACTTATCAAGCACAGGAAATATT 57.647 30.769 0.00 0.00 0.00 1.28
3475 3645 7.944729 ACAACTTATCAAGCACAGGAAATAT 57.055 32.000 0.00 0.00 0.00 1.28
3476 3646 7.759489 AACAACTTATCAAGCACAGGAAATA 57.241 32.000 0.00 0.00 0.00 1.40
3526 3696 3.512516 GGATGGTTCTGGCAGCGC 61.513 66.667 10.34 0.00 0.00 5.92
3527 3697 1.377725 AAGGATGGTTCTGGCAGCG 60.378 57.895 10.34 0.00 0.00 5.18
3528 3698 1.941999 GCAAGGATGGTTCTGGCAGC 61.942 60.000 10.34 0.00 0.00 5.25
3529 3699 0.323178 AGCAAGGATGGTTCTGGCAG 60.323 55.000 8.58 8.58 32.07 4.85
3530 3700 0.112995 AAGCAAGGATGGTTCTGGCA 59.887 50.000 0.00 0.00 43.50 4.92
3531 3701 2.967270 AAGCAAGGATGGTTCTGGC 58.033 52.632 0.00 0.00 43.50 4.85
3537 3707 2.519013 GGTTCTTGAAGCAAGGATGGT 58.481 47.619 7.27 0.00 41.33 3.55
3538 3708 1.470098 CGGTTCTTGAAGCAAGGATGG 59.530 52.381 12.15 0.00 41.33 3.51
3539 3709 2.095567 CACGGTTCTTGAAGCAAGGATG 60.096 50.000 12.15 0.00 41.33 3.51
3540 3710 2.154462 CACGGTTCTTGAAGCAAGGAT 58.846 47.619 12.15 0.00 41.33 3.24
3541 3711 1.134220 ACACGGTTCTTGAAGCAAGGA 60.134 47.619 12.15 0.00 41.33 3.36
3542 3712 1.002468 CACACGGTTCTTGAAGCAAGG 60.002 52.381 12.15 4.19 41.33 3.61
3543 3713 1.002468 CCACACGGTTCTTGAAGCAAG 60.002 52.381 12.15 0.84 42.25 4.01
3544 3714 1.021202 CCACACGGTTCTTGAAGCAA 58.979 50.000 12.15 0.00 0.00 3.91
3545 3715 0.107410 ACCACACGGTTCTTGAAGCA 60.107 50.000 12.15 0.00 46.31 3.91
3546 3716 0.307760 CACCACACGGTTCTTGAAGC 59.692 55.000 2.80 2.80 46.31 3.86
3547 3717 0.944386 CCACCACACGGTTCTTGAAG 59.056 55.000 0.00 0.00 46.31 3.02
3548 3718 0.542333 TCCACCACACGGTTCTTGAA 59.458 50.000 0.00 0.00 46.31 2.69
3549 3719 0.105964 CTCCACCACACGGTTCTTGA 59.894 55.000 0.00 0.00 46.31 3.02
3550 3720 0.884704 CCTCCACCACACGGTTCTTG 60.885 60.000 0.00 0.00 46.31 3.02
3551 3721 1.342672 ACCTCCACCACACGGTTCTT 61.343 55.000 0.00 0.00 46.31 2.52
3552 3722 1.342672 AACCTCCACCACACGGTTCT 61.343 55.000 0.00 0.00 46.31 3.01
3553 3723 0.393820 TAACCTCCACCACACGGTTC 59.606 55.000 0.00 0.00 46.31 3.62
3554 3724 1.061546 ATAACCTCCACCACACGGTT 58.938 50.000 0.00 0.00 46.31 4.44
3556 3726 1.138266 CCTATAACCTCCACCACACGG 59.862 57.143 0.00 0.00 38.77 4.94
3557 3727 1.829222 ACCTATAACCTCCACCACACG 59.171 52.381 0.00 0.00 0.00 4.49
3558 3728 3.606687 CAACCTATAACCTCCACCACAC 58.393 50.000 0.00 0.00 0.00 3.82
3559 3729 2.574369 CCAACCTATAACCTCCACCACA 59.426 50.000 0.00 0.00 0.00 4.17
3560 3730 2.574824 ACCAACCTATAACCTCCACCAC 59.425 50.000 0.00 0.00 0.00 4.16
3561 3731 2.923908 ACCAACCTATAACCTCCACCA 58.076 47.619 0.00 0.00 0.00 4.17
3562 3732 3.181472 CGTACCAACCTATAACCTCCACC 60.181 52.174 0.00 0.00 0.00 4.61
3563 3733 3.739209 GCGTACCAACCTATAACCTCCAC 60.739 52.174 0.00 0.00 0.00 4.02
3564 3734 2.431782 GCGTACCAACCTATAACCTCCA 59.568 50.000 0.00 0.00 0.00 3.86
3565 3735 2.697229 AGCGTACCAACCTATAACCTCC 59.303 50.000 0.00 0.00 0.00 4.30
3566 3736 3.382546 TGAGCGTACCAACCTATAACCTC 59.617 47.826 0.00 0.00 0.00 3.85
3567 3737 3.131755 GTGAGCGTACCAACCTATAACCT 59.868 47.826 0.00 0.00 0.00 3.50
3568 3738 3.451526 GTGAGCGTACCAACCTATAACC 58.548 50.000 0.00 0.00 0.00 2.85
3569 3739 3.451526 GGTGAGCGTACCAACCTATAAC 58.548 50.000 7.45 0.00 40.54 1.89
3570 3740 3.806625 GGTGAGCGTACCAACCTATAA 57.193 47.619 7.45 0.00 40.54 0.98
3579 3749 1.369625 CAGGAAATGGTGAGCGTACC 58.630 55.000 5.57 5.57 41.24 3.34
3580 3750 0.727398 GCAGGAAATGGTGAGCGTAC 59.273 55.000 0.00 0.00 0.00 3.67
3581 3751 0.392461 GGCAGGAAATGGTGAGCGTA 60.392 55.000 0.00 0.00 0.00 4.42
3582 3752 1.675641 GGCAGGAAATGGTGAGCGT 60.676 57.895 0.00 0.00 0.00 5.07
3583 3753 2.409870 GGGCAGGAAATGGTGAGCG 61.410 63.158 0.00 0.00 0.00 5.03
3584 3754 0.255890 TAGGGCAGGAAATGGTGAGC 59.744 55.000 0.00 0.00 0.00 4.26
3585 3755 2.806945 TTAGGGCAGGAAATGGTGAG 57.193 50.000 0.00 0.00 0.00 3.51
3586 3756 2.291540 CCTTTAGGGCAGGAAATGGTGA 60.292 50.000 0.00 0.00 32.41 4.02
3587 3757 2.102578 CCTTTAGGGCAGGAAATGGTG 58.897 52.381 0.00 0.00 32.41 4.17
3588 3758 1.716503 ACCTTTAGGGCAGGAAATGGT 59.283 47.619 0.10 0.00 40.27 3.55
3589 3759 2.532250 ACCTTTAGGGCAGGAAATGG 57.468 50.000 0.10 0.00 40.27 3.16
3590 3760 4.236527 AGTACCTTTAGGGCAGGAAATG 57.763 45.455 0.10 0.00 40.27 2.32
3591 3761 4.291249 TCAAGTACCTTTAGGGCAGGAAAT 59.709 41.667 0.10 0.00 40.27 2.17
3592 3762 3.653836 TCAAGTACCTTTAGGGCAGGAAA 59.346 43.478 0.10 0.00 40.27 3.13
3593 3763 3.253220 TCAAGTACCTTTAGGGCAGGAA 58.747 45.455 0.10 0.00 40.27 3.36
3594 3764 2.910544 TCAAGTACCTTTAGGGCAGGA 58.089 47.619 0.10 0.00 40.27 3.86
3595 3765 3.713826 TTCAAGTACCTTTAGGGCAGG 57.286 47.619 0.10 0.00 40.27 4.85
3596 3766 4.399303 CCAATTCAAGTACCTTTAGGGCAG 59.601 45.833 0.10 0.00 40.27 4.85
3597 3767 4.043561 TCCAATTCAAGTACCTTTAGGGCA 59.956 41.667 0.10 0.00 40.27 5.36
3598 3768 4.398358 GTCCAATTCAAGTACCTTTAGGGC 59.602 45.833 0.10 0.00 40.27 5.19
3599 3769 5.566469 TGTCCAATTCAAGTACCTTTAGGG 58.434 41.667 0.10 0.00 40.27 3.53
3600 3770 7.703058 ATTGTCCAATTCAAGTACCTTTAGG 57.297 36.000 0.00 0.00 42.17 2.69
3601 3771 9.410556 CAAATTGTCCAATTCAAGTACCTTTAG 57.589 33.333 5.77 0.00 39.88 1.85
3602 3772 8.364142 CCAAATTGTCCAATTCAAGTACCTTTA 58.636 33.333 5.77 0.00 39.88 1.85
3603 3773 7.070571 TCCAAATTGTCCAATTCAAGTACCTTT 59.929 33.333 5.77 0.00 39.88 3.11
3604 3774 6.553100 TCCAAATTGTCCAATTCAAGTACCTT 59.447 34.615 5.77 0.00 39.88 3.50
3605 3775 6.074648 TCCAAATTGTCCAATTCAAGTACCT 58.925 36.000 5.77 0.00 39.88 3.08
3606 3776 6.208599 TCTCCAAATTGTCCAATTCAAGTACC 59.791 38.462 5.77 0.00 39.88 3.34
3607 3777 7.214467 TCTCCAAATTGTCCAATTCAAGTAC 57.786 36.000 5.77 0.00 39.88 2.73
3608 3778 6.071952 GCTCTCCAAATTGTCCAATTCAAGTA 60.072 38.462 5.77 0.00 39.88 2.24
3609 3779 5.279156 GCTCTCCAAATTGTCCAATTCAAGT 60.279 40.000 5.77 0.00 39.88 3.16
3610 3780 5.047519 AGCTCTCCAAATTGTCCAATTCAAG 60.048 40.000 5.77 4.77 39.88 3.02
3611 3781 4.834496 AGCTCTCCAAATTGTCCAATTCAA 59.166 37.500 5.77 0.00 39.88 2.69
3612 3782 4.410099 AGCTCTCCAAATTGTCCAATTCA 58.590 39.130 5.77 0.00 39.88 2.57
3613 3783 5.397142 AAGCTCTCCAAATTGTCCAATTC 57.603 39.130 5.77 0.00 39.88 2.17
3614 3784 4.221482 GGAAGCTCTCCAAATTGTCCAATT 59.779 41.667 9.31 0.00 44.67 2.32
3615 3785 3.766051 GGAAGCTCTCCAAATTGTCCAAT 59.234 43.478 9.31 0.00 44.67 3.16
3616 3786 3.157087 GGAAGCTCTCCAAATTGTCCAA 58.843 45.455 9.31 0.00 44.67 3.53
3617 3787 2.795329 GGAAGCTCTCCAAATTGTCCA 58.205 47.619 9.31 0.00 44.67 4.02
3636 3806 2.995283 TCAACTGCATTCCATCTCTGG 58.005 47.619 0.00 0.00 44.64 3.86
3637 3807 4.259356 TCTTCAACTGCATTCCATCTCTG 58.741 43.478 0.00 0.00 0.00 3.35
3638 3808 4.019501 ACTCTTCAACTGCATTCCATCTCT 60.020 41.667 0.00 0.00 0.00 3.10
3639 3809 4.260170 ACTCTTCAACTGCATTCCATCTC 58.740 43.478 0.00 0.00 0.00 2.75
3640 3810 4.019501 AGACTCTTCAACTGCATTCCATCT 60.020 41.667 0.00 0.00 0.00 2.90
3641 3811 4.260170 AGACTCTTCAACTGCATTCCATC 58.740 43.478 0.00 0.00 0.00 3.51
3642 3812 4.260170 GAGACTCTTCAACTGCATTCCAT 58.740 43.478 0.00 0.00 0.00 3.41
3643 3813 3.071457 TGAGACTCTTCAACTGCATTCCA 59.929 43.478 3.68 0.00 0.00 3.53
3644 3814 3.668447 TGAGACTCTTCAACTGCATTCC 58.332 45.455 3.68 0.00 0.00 3.01
3645 3815 4.153835 CCTTGAGACTCTTCAACTGCATTC 59.846 45.833 3.68 0.00 33.71 2.67
3646 3816 4.070716 CCTTGAGACTCTTCAACTGCATT 58.929 43.478 3.68 0.00 33.71 3.56
3647 3817 3.326006 TCCTTGAGACTCTTCAACTGCAT 59.674 43.478 3.68 0.00 33.71 3.96
3648 3818 2.700371 TCCTTGAGACTCTTCAACTGCA 59.300 45.455 3.68 0.00 33.71 4.41
3649 3819 3.006323 TCTCCTTGAGACTCTTCAACTGC 59.994 47.826 3.68 0.00 33.35 4.40
3650 3820 4.862902 TCTCCTTGAGACTCTTCAACTG 57.137 45.455 3.68 0.00 33.35 3.16
3651 3821 4.651503 TGTTCTCCTTGAGACTCTTCAACT 59.348 41.667 3.68 0.00 38.51 3.16
3652 3822 4.950050 TGTTCTCCTTGAGACTCTTCAAC 58.050 43.478 3.68 0.00 38.51 3.18
3653 3823 4.895889 TCTGTTCTCCTTGAGACTCTTCAA 59.104 41.667 3.68 0.00 38.51 2.69
3654 3824 4.474394 TCTGTTCTCCTTGAGACTCTTCA 58.526 43.478 3.68 0.00 38.51 3.02
3655 3825 5.659440 ATCTGTTCTCCTTGAGACTCTTC 57.341 43.478 3.68 0.00 38.51 2.87
3656 3826 7.180051 ACAATATCTGTTCTCCTTGAGACTCTT 59.820 37.037 3.68 0.00 38.51 2.85
3657 3827 6.667414 ACAATATCTGTTCTCCTTGAGACTCT 59.333 38.462 3.68 0.00 38.51 3.24
3658 3828 6.872920 ACAATATCTGTTCTCCTTGAGACTC 58.127 40.000 0.00 0.00 38.51 3.36
3659 3829 6.865834 ACAATATCTGTTCTCCTTGAGACT 57.134 37.500 0.00 0.00 38.51 3.24
3679 3849 4.526970 AGTTTCTCAAGCTGAGGAAACAA 58.473 39.130 25.95 9.29 43.15 2.83
3681 3851 6.809630 ATTAGTTTCTCAAGCTGAGGAAAC 57.190 37.500 21.03 21.03 43.15 2.78
3699 3869 9.965902 AACTCTGGACATTTCTGAATTATTAGT 57.034 29.630 0.00 0.00 0.00 2.24
3703 3873 8.641498 AACAACTCTGGACATTTCTGAATTAT 57.359 30.769 0.00 0.00 0.00 1.28
3705 3875 6.966534 AACAACTCTGGACATTTCTGAATT 57.033 33.333 0.00 0.00 0.00 2.17
3718 3939 4.832248 TCTGGTAATGCTAACAACTCTGG 58.168 43.478 0.00 0.00 0.00 3.86
3719 3940 5.163814 GCTTCTGGTAATGCTAACAACTCTG 60.164 44.000 0.00 0.00 0.00 3.35
3721 3942 4.695455 TGCTTCTGGTAATGCTAACAACTC 59.305 41.667 0.00 0.00 0.00 3.01
3727 4155 3.712016 TGGTGCTTCTGGTAATGCTAA 57.288 42.857 0.00 0.00 0.00 3.09
3762 4190 2.500098 TCTATAACCACCTCCACTGCAC 59.500 50.000 0.00 0.00 0.00 4.57
3765 4193 4.164221 ACCAATCTATAACCACCTCCACTG 59.836 45.833 0.00 0.00 0.00 3.66
3768 4196 3.118038 GCACCAATCTATAACCACCTCCA 60.118 47.826 0.00 0.00 0.00 3.86
3817 4245 5.950549 AGCTCTCCAAGTCATTCATTTTGAT 59.049 36.000 0.00 0.00 0.00 2.57
3870 4298 9.905713 TCAAGCAAAGGAAACAGTATATATTCT 57.094 29.630 0.00 0.00 0.00 2.40
3872 4300 9.125026 CCTCAAGCAAAGGAAACAGTATATATT 57.875 33.333 0.00 0.00 35.83 1.28
3873 4301 8.494433 TCCTCAAGCAAAGGAAACAGTATATAT 58.506 33.333 0.00 0.00 39.99 0.86
3874 4302 7.857456 TCCTCAAGCAAAGGAAACAGTATATA 58.143 34.615 0.00 0.00 39.99 0.86
3875 4303 6.721318 TCCTCAAGCAAAGGAAACAGTATAT 58.279 36.000 0.00 0.00 39.99 0.86
3876 4304 6.121776 TCCTCAAGCAAAGGAAACAGTATA 57.878 37.500 0.00 0.00 39.99 1.47
3877 4305 4.985538 TCCTCAAGCAAAGGAAACAGTAT 58.014 39.130 0.00 0.00 39.99 2.12
3878 4306 4.431416 TCCTCAAGCAAAGGAAACAGTA 57.569 40.909 0.00 0.00 39.99 2.74
3879 4307 3.297134 TCCTCAAGCAAAGGAAACAGT 57.703 42.857 0.00 0.00 39.99 3.55
3885 4313 3.587061 TGGATAGTTCCTCAAGCAAAGGA 59.413 43.478 0.00 0.00 43.07 3.36
3886 4314 3.955471 TGGATAGTTCCTCAAGCAAAGG 58.045 45.455 0.00 0.00 43.07 3.11
3887 4315 5.649395 TGAATGGATAGTTCCTCAAGCAAAG 59.351 40.000 0.00 0.00 43.07 2.77
3888 4316 5.569355 TGAATGGATAGTTCCTCAAGCAAA 58.431 37.500 0.00 0.00 43.07 3.68
3889 4317 5.045651 TCTGAATGGATAGTTCCTCAAGCAA 60.046 40.000 0.00 0.00 43.07 3.91
3890 4318 4.471025 TCTGAATGGATAGTTCCTCAAGCA 59.529 41.667 0.00 0.00 43.07 3.91
3891 4319 5.028549 TCTGAATGGATAGTTCCTCAAGC 57.971 43.478 0.00 0.00 43.07 4.01
3892 4320 7.468357 GCATTTCTGAATGGATAGTTCCTCAAG 60.468 40.741 0.00 0.00 42.35 3.02
3893 4321 6.319658 GCATTTCTGAATGGATAGTTCCTCAA 59.680 38.462 0.00 0.00 42.35 3.02
3894 4322 5.824624 GCATTTCTGAATGGATAGTTCCTCA 59.175 40.000 0.00 0.00 42.35 3.86
3895 4323 5.240403 GGCATTTCTGAATGGATAGTTCCTC 59.760 44.000 0.00 0.00 42.35 3.71
3896 4324 5.136105 GGCATTTCTGAATGGATAGTTCCT 58.864 41.667 0.00 0.00 42.35 3.36
3897 4325 4.279420 GGGCATTTCTGAATGGATAGTTCC 59.721 45.833 0.00 0.00 42.35 3.62
3898 4326 4.889409 TGGGCATTTCTGAATGGATAGTTC 59.111 41.667 0.00 0.00 42.35 3.01
3899 4327 4.870636 TGGGCATTTCTGAATGGATAGTT 58.129 39.130 0.00 0.00 42.35 2.24
3900 4328 4.524802 TGGGCATTTCTGAATGGATAGT 57.475 40.909 0.00 0.00 42.35 2.12
3901 4329 5.361857 ACTTTGGGCATTTCTGAATGGATAG 59.638 40.000 0.00 0.00 42.35 2.08
3902 4330 5.271598 ACTTTGGGCATTTCTGAATGGATA 58.728 37.500 0.00 0.00 42.35 2.59
3903 4331 4.098894 ACTTTGGGCATTTCTGAATGGAT 58.901 39.130 0.00 0.00 42.35 3.41
3904 4332 3.509442 ACTTTGGGCATTTCTGAATGGA 58.491 40.909 0.00 0.00 42.35 3.41
3905 4333 3.967332 ACTTTGGGCATTTCTGAATGG 57.033 42.857 0.00 0.00 42.35 3.16
3906 4334 4.885413 TCAACTTTGGGCATTTCTGAATG 58.115 39.130 0.00 0.00 44.42 2.67
3907 4335 5.750352 ATCAACTTTGGGCATTTCTGAAT 57.250 34.783 0.00 0.00 0.00 2.57
3908 4336 5.185635 CCTATCAACTTTGGGCATTTCTGAA 59.814 40.000 0.00 0.00 0.00 3.02
3909 4337 4.706476 CCTATCAACTTTGGGCATTTCTGA 59.294 41.667 0.00 0.00 0.00 3.27
3910 4338 4.463891 ACCTATCAACTTTGGGCATTTCTG 59.536 41.667 0.00 0.00 0.00 3.02
3911 4339 4.677182 ACCTATCAACTTTGGGCATTTCT 58.323 39.130 0.00 0.00 0.00 2.52
3924 4352 1.379527 CCTCGGGCAAACCTATCAAC 58.620 55.000 0.00 0.00 36.97 3.18
3925 4353 3.873781 CCTCGGGCAAACCTATCAA 57.126 52.632 0.00 0.00 36.97 2.57
3939 4367 2.426522 TCTTGAAGAAATGGTGCCTCG 58.573 47.619 0.00 0.00 0.00 4.63
3942 4370 2.627699 TGGTTCTTGAAGAAATGGTGCC 59.372 45.455 9.51 6.16 35.75 5.01
4268 5302 1.815003 CAATTGAAGTCCACTGAGCCC 59.185 52.381 0.00 0.00 0.00 5.19
4375 5415 0.831711 TCCCACAGCTCTAGTGCACA 60.832 55.000 21.04 4.13 35.69 4.57
4388 5428 4.986054 AGGTGTACAAAATAGTCCCACA 57.014 40.909 0.00 0.00 0.00 4.17
4544 5584 2.225467 GACTCCTTATTGCTGATGGCC 58.775 52.381 0.00 0.00 40.92 5.36
4755 5823 0.529773 GATTCGCGGGTGATACAGCA 60.530 55.000 6.13 0.00 33.07 4.41
4768 5851 2.253603 GCATGGACAAAAGTGATTCGC 58.746 47.619 0.00 0.00 0.00 4.70
4879 5962 7.676004 TGACATGTCAGGACTTGAATACTAAA 58.324 34.615 24.56 0.00 39.09 1.85
4965 6075 2.781595 AATGCTTGCTTGCTGCTGCC 62.782 55.000 13.47 0.00 43.37 4.85
5092 6211 3.648067 AGAGACTCCAAAGATGTCAACCA 59.352 43.478 0.00 0.00 33.56 3.67
5172 6292 1.371337 GCTCATTCGGCAGTGATGCA 61.371 55.000 2.29 0.00 36.33 3.96
5289 6412 0.804989 GGGCATCCAGTTCTTTGTCG 59.195 55.000 0.00 0.00 0.00 4.35
5361 6517 2.167693 GACGTGGTAGATGTGATGGGAA 59.832 50.000 0.00 0.00 0.00 3.97
5497 6677 9.687210 GTCTTCGGTTTAAATGGTTTAAATTCT 57.313 29.630 9.90 0.00 44.25 2.40
5592 6772 7.317842 ACATCTGAAGTAAATGCATCTGAAG 57.682 36.000 0.00 0.00 0.00 3.02
5625 6805 4.870363 ACCAATTTCGGTGTTCATTGAAG 58.130 39.130 0.00 0.00 38.07 3.02
5700 6880 1.003839 CGCAAAGCAGGTCACCCTA 60.004 57.895 0.00 0.00 39.89 3.53
5766 6946 4.563374 GCTGGAACAAACCAAAGCCATATT 60.563 41.667 0.00 0.00 38.70 1.28
5841 7021 2.570135 GCCCTTTGCATTTGGTTTTCA 58.430 42.857 0.00 0.00 40.77 2.69
5853 7033 2.493278 ACACAGAATACATGCCCTTTGC 59.507 45.455 0.00 0.00 41.77 3.68
5854 7034 3.674138 GCACACAGAATACATGCCCTTTG 60.674 47.826 0.00 0.00 0.00 2.77
5983 7163 7.334171 GGAATTGTCCCAAGGAAATAAATTGTG 59.666 37.037 0.00 0.00 38.08 3.33
5985 7165 7.848223 GGAATTGTCCCAAGGAAATAAATTG 57.152 36.000 0.00 0.00 38.08 2.32
6001 7181 5.298026 GCTTCTCCTAAATCTGGGAATTGTC 59.702 44.000 0.00 0.00 30.58 3.18
6002 7182 5.044550 AGCTTCTCCTAAATCTGGGAATTGT 60.045 40.000 0.00 0.00 30.58 2.71
6003 7183 5.444176 AGCTTCTCCTAAATCTGGGAATTG 58.556 41.667 0.00 0.00 30.58 2.32
6004 7184 5.723860 AGCTTCTCCTAAATCTGGGAATT 57.276 39.130 0.00 0.00 30.58 2.17
6005 7185 5.723860 AAGCTTCTCCTAAATCTGGGAAT 57.276 39.130 0.00 0.00 30.58 3.01
6006 7186 5.726793 ACTAAGCTTCTCCTAAATCTGGGAA 59.273 40.000 0.00 0.00 30.58 3.97
6007 7187 5.281314 ACTAAGCTTCTCCTAAATCTGGGA 58.719 41.667 0.00 0.00 0.00 4.37
6009 7189 6.881602 ACAAACTAAGCTTCTCCTAAATCTGG 59.118 38.462 0.00 0.00 0.00 3.86
6010 7190 7.913674 ACAAACTAAGCTTCTCCTAAATCTG 57.086 36.000 0.00 0.00 0.00 2.90
6011 7191 7.608376 GGAACAAACTAAGCTTCTCCTAAATCT 59.392 37.037 0.00 0.00 0.00 2.40
6012 7192 7.390718 TGGAACAAACTAAGCTTCTCCTAAATC 59.609 37.037 0.00 0.00 31.92 2.17
6013 7193 7.231467 TGGAACAAACTAAGCTTCTCCTAAAT 58.769 34.615 0.00 0.00 31.92 1.40
6014 7194 6.597562 TGGAACAAACTAAGCTTCTCCTAAA 58.402 36.000 0.00 0.00 31.92 1.85
6015 7195 6.182507 TGGAACAAACTAAGCTTCTCCTAA 57.817 37.500 0.00 0.00 31.92 2.69
6016 7196 5.794894 CTGGAACAAACTAAGCTTCTCCTA 58.205 41.667 0.00 0.00 38.70 2.94
6017 7197 4.646572 CTGGAACAAACTAAGCTTCTCCT 58.353 43.478 0.00 0.00 38.70 3.69
6018 7198 3.189495 GCTGGAACAAACTAAGCTTCTCC 59.811 47.826 0.00 0.00 38.70 3.71
6019 7199 3.120511 CGCTGGAACAAACTAAGCTTCTC 60.121 47.826 0.00 0.00 38.70 2.87
6020 7200 2.808543 CGCTGGAACAAACTAAGCTTCT 59.191 45.455 0.00 0.00 38.70 2.85
6021 7201 2.548480 ACGCTGGAACAAACTAAGCTTC 59.452 45.455 0.00 0.00 38.70 3.86
6022 7202 2.572290 ACGCTGGAACAAACTAAGCTT 58.428 42.857 3.48 3.48 38.70 3.74
6023 7203 2.256117 ACGCTGGAACAAACTAAGCT 57.744 45.000 0.00 0.00 38.70 3.74
6024 7204 3.042887 CAAACGCTGGAACAAACTAAGC 58.957 45.455 0.00 0.00 38.70 3.09
6025 7205 4.287238 ACAAACGCTGGAACAAACTAAG 57.713 40.909 0.00 0.00 38.70 2.18
6026 7206 4.705337 AACAAACGCTGGAACAAACTAA 57.295 36.364 0.00 0.00 38.70 2.24
6027 7207 4.877251 AGTAACAAACGCTGGAACAAACTA 59.123 37.500 0.00 0.00 38.70 2.24
6028 7208 3.692593 AGTAACAAACGCTGGAACAAACT 59.307 39.130 0.00 0.00 38.70 2.66
6029 7209 4.023739 AGTAACAAACGCTGGAACAAAC 57.976 40.909 0.00 0.00 38.70 2.93
6122 7302 0.798776 GAATGTTCACACGCCTGAGG 59.201 55.000 0.00 0.00 0.00 3.86
6164 7344 2.023673 CCTTTCTGTCACCAACTGCAA 58.976 47.619 0.00 0.00 0.00 4.08
6234 7414 9.439461 TGGCTATTACTATGGCATAATCTAGAT 57.561 33.333 8.79 0.00 39.80 1.98
6306 7486 3.849911 CTCAGTTAATCAGCTTCGGTGA 58.150 45.455 0.00 0.00 44.17 4.02
6317 7497 1.669779 CCTGCTGCTGCTCAGTTAATC 59.330 52.381 17.00 0.00 44.66 1.75
6347 7535 3.062763 CAACTGACTGACATGACACCTC 58.937 50.000 0.00 0.00 0.00 3.85
6373 7561 2.715536 GGACAAAGCCGAGTGGTTT 58.284 52.632 0.00 0.00 45.20 3.27
6382 7570 1.029681 AAAACCACTCGGACAAAGCC 58.970 50.000 0.00 0.00 35.59 4.35
6383 7571 1.673920 TCAAAACCACTCGGACAAAGC 59.326 47.619 0.00 0.00 35.59 3.51
6384 7572 2.290641 CCTCAAAACCACTCGGACAAAG 59.709 50.000 0.00 0.00 35.59 2.77
6386 7574 1.210967 ACCTCAAAACCACTCGGACAA 59.789 47.619 0.00 0.00 35.59 3.18
6387 7575 0.834612 ACCTCAAAACCACTCGGACA 59.165 50.000 0.00 0.00 35.59 4.02
6388 7576 1.226746 CACCTCAAAACCACTCGGAC 58.773 55.000 0.00 0.00 35.59 4.79
6389 7577 0.834612 ACACCTCAAAACCACTCGGA 59.165 50.000 0.00 0.00 35.59 4.55
6390 7578 1.202651 AGACACCTCAAAACCACTCGG 60.203 52.381 0.00 0.00 38.77 4.63
6391 7579 2.240493 AGACACCTCAAAACCACTCG 57.760 50.000 0.00 0.00 0.00 4.18
6393 7581 3.119137 GCAAAAGACACCTCAAAACCACT 60.119 43.478 0.00 0.00 0.00 4.00
6394 7582 3.186909 GCAAAAGACACCTCAAAACCAC 58.813 45.455 0.00 0.00 0.00 4.16
6395 7583 2.167487 GGCAAAAGACACCTCAAAACCA 59.833 45.455 0.00 0.00 0.00 3.67
6396 7584 2.430694 AGGCAAAAGACACCTCAAAACC 59.569 45.455 0.00 0.00 0.00 3.27
6397 7585 3.447742 CAGGCAAAAGACACCTCAAAAC 58.552 45.455 0.00 0.00 0.00 2.43
6398 7586 2.430332 CCAGGCAAAAGACACCTCAAAA 59.570 45.455 0.00 0.00 0.00 2.44
6399 7587 2.031120 CCAGGCAAAAGACACCTCAAA 58.969 47.619 0.00 0.00 0.00 2.69
6400 7588 1.064017 ACCAGGCAAAAGACACCTCAA 60.064 47.619 0.00 0.00 0.00 3.02
6401 7589 0.550914 ACCAGGCAAAAGACACCTCA 59.449 50.000 0.00 0.00 0.00 3.86
6402 7590 1.239347 GACCAGGCAAAAGACACCTC 58.761 55.000 0.00 0.00 0.00 3.85
6403 7591 0.550914 TGACCAGGCAAAAGACACCT 59.449 50.000 0.00 0.00 0.00 4.00
6404 7592 0.954452 CTGACCAGGCAAAAGACACC 59.046 55.000 0.00 0.00 0.00 4.16
6405 7593 0.954452 CCTGACCAGGCAAAAGACAC 59.046 55.000 2.75 0.00 42.44 3.67
6453 8116 6.346896 GGCTAACTACTGGGTATATATTGCC 58.653 44.000 0.00 0.00 0.00 4.52
6455 8118 7.364762 CCAGGGCTAACTACTGGGTATATATTG 60.365 44.444 0.00 0.00 46.24 1.90
6457 8120 6.203072 CCAGGGCTAACTACTGGGTATATAT 58.797 44.000 0.00 0.00 46.24 0.86
6462 8125 2.170012 CCAGGGCTAACTACTGGGTA 57.830 55.000 0.00 0.00 46.24 3.69
6471 8134 1.134371 GGTGTCATCTCCAGGGCTAAC 60.134 57.143 0.00 0.00 0.00 2.34
6479 8142 1.625315 CAGTCTTGGGTGTCATCTCCA 59.375 52.381 0.00 0.00 0.00 3.86
6510 8173 6.089150 GTGTCAGTTTGAACTAGTAACGATCC 59.911 42.308 0.00 0.00 37.08 3.36
6533 8423 4.391405 TCCAGCACAGTCTACATATGTG 57.609 45.455 18.81 8.56 45.59 3.21
6541 8431 1.623811 GAACCCTTCCAGCACAGTCTA 59.376 52.381 0.00 0.00 0.00 2.59
6553 8443 3.565902 CACAAACAAGGAGAGAACCCTTC 59.434 47.826 0.00 0.00 41.79 3.46
6609 11232 1.630244 CTCAACGCAAAGAGAGCCCG 61.630 60.000 0.00 0.00 33.74 6.13
6664 11379 1.452651 CAGGCATCGCTCCCAACAT 60.453 57.895 0.00 0.00 0.00 2.71
6667 11382 1.074775 AAACAGGCATCGCTCCCAA 59.925 52.632 0.00 0.00 0.00 4.12
6677 11392 1.679139 CCTCAACACTCAAACAGGCA 58.321 50.000 0.00 0.00 0.00 4.75


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.