Multiple sequence alignment - TraesCS1A01G008000

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G008000 chr1A 100.000 1787 0 0 1588 3374 4203001 4201215 0.000000e+00 3301.0
1 TraesCS1A01G008000 chr1A 94.787 1573 70 8 1702 3274 4096390 4094830 0.000000e+00 2440.0
2 TraesCS1A01G008000 chr1A 100.000 1254 0 0 1 1254 4204588 4203335 0.000000e+00 2316.0
3 TraesCS1A01G008000 chr1A 88.634 959 80 16 296 1250 4097521 4096588 0.000000e+00 1140.0
4 TraesCS1A01G008000 chr1A 88.981 726 62 11 339 1059 6516769 6517481 0.000000e+00 881.0
5 TraesCS1A01G008000 chr1A 81.245 1141 147 43 1603 2706 6517557 6518667 0.000000e+00 859.0
6 TraesCS1A01G008000 chr1A 89.910 664 55 11 401 1059 6561199 6561855 0.000000e+00 845.0
7 TraesCS1A01G008000 chr1A 100.000 51 0 0 3324 3374 4094854 4094804 9.970000e-16 95.3
8 TraesCS1A01G008000 chr1A 94.118 51 3 0 339 389 6561060 6561110 1.000000e-10 78.7
9 TraesCS1A01G008000 chr1D 88.652 1780 150 19 1604 3374 84861 86597 0.000000e+00 2121.0
10 TraesCS1A01G008000 chr1D 89.279 1679 123 27 1588 3255 99663 101295 0.000000e+00 2050.0
11 TraesCS1A01G008000 chr1D 87.552 956 90 17 305 1254 98667 99599 0.000000e+00 1079.0
12 TraesCS1A01G008000 chr1D 81.014 1401 162 55 1627 2967 4342117 4343473 0.000000e+00 1018.0
13 TraesCS1A01G008000 chr1D 80.511 1447 178 56 1588 2967 7156331 7154922 0.000000e+00 1014.0
14 TraesCS1A01G008000 chr1D 89.306 720 62 11 339 1056 5356113 5356819 0.000000e+00 889.0
15 TraesCS1A01G008000 chr1D 81.469 1144 136 49 1603 2706 5356898 5358005 0.000000e+00 869.0
16 TraesCS1A01G008000 chr1D 90.179 672 55 7 395 1059 84072 84739 0.000000e+00 865.0
17 TraesCS1A01G008000 chr1D 86.546 721 64 20 345 1062 3711149 3710459 0.000000e+00 763.0
18 TraesCS1A01G008000 chr1D 86.139 606 53 18 339 940 3841900 3841322 2.860000e-175 625.0
19 TraesCS1A01G008000 chr1D 82.390 477 60 19 1588 2061 5139394 5139849 8.770000e-106 394.0
20 TraesCS1A01G008000 chr1D 90.909 121 11 0 3254 3374 101410 101530 2.690000e-36 163.0
21 TraesCS1A01G008000 chr1D 91.667 84 5 1 3033 3116 3707346 3707265 7.650000e-22 115.0
22 TraesCS1A01G008000 chr1B 87.762 1430 117 27 1588 3006 5584920 5583538 0.000000e+00 1618.0
23 TraesCS1A01G008000 chr1B 87.144 1089 102 17 1631 2712 5520416 5519359 0.000000e+00 1201.0
24 TraesCS1A01G008000 chr1B 85.877 1140 107 28 1588 2712 5687373 5686273 0.000000e+00 1164.0
25 TraesCS1A01G008000 chr1B 80.462 1428 177 49 1604 2967 22186015 22187404 0.000000e+00 998.0
26 TraesCS1A01G008000 chr1B 80.194 1444 186 51 1588 2967 6437224 6435817 0.000000e+00 990.0
27 TraesCS1A01G008000 chr1B 90.199 755 63 8 309 1062 5688376 5687632 0.000000e+00 974.0
28 TraesCS1A01G008000 chr1B 85.947 676 70 18 586 1254 5585887 5585230 0.000000e+00 699.0
29 TraesCS1A01G008000 chr1B 84.858 667 72 21 595 1254 5521158 5520514 0.000000e+00 645.0
30 TraesCS1A01G008000 chr1B 92.188 192 14 1 3183 3374 5583536 5583346 1.540000e-68 270.0
31 TraesCS1A01G008000 chr1B 85.890 163 21 2 3213 3374 5944190 5944029 4.480000e-39 172.0
32 TraesCS1A01G008000 chr1B 90.323 93 9 0 3033 3125 6245758 6245666 4.570000e-24 122.0
33 TraesCS1A01G008000 chr1B 89.247 93 10 0 3033 3125 7491558 7491466 2.130000e-22 117.0
34 TraesCS1A01G008000 chrUn 80.620 387 43 5 2495 2853 480721451 480721833 1.540000e-68 270.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G008000 chr1A 4201215 4204588 3373 True 2808.500000 3301 100.000000 1 3374 2 chr1A.!!$R2 3373
1 TraesCS1A01G008000 chr1A 4094804 4097521 2717 True 1225.100000 2440 94.473667 296 3374 3 chr1A.!!$R1 3078
2 TraesCS1A01G008000 chr1A 6516769 6518667 1898 False 870.000000 881 85.113000 339 2706 2 chr1A.!!$F1 2367
3 TraesCS1A01G008000 chr1A 6561060 6561855 795 False 461.850000 845 92.014000 339 1059 2 chr1A.!!$F2 720
4 TraesCS1A01G008000 chr1D 84072 86597 2525 False 1493.000000 2121 89.415500 395 3374 2 chr1D.!!$F3 2979
5 TraesCS1A01G008000 chr1D 98667 101530 2863 False 1097.333333 2050 89.246667 305 3374 3 chr1D.!!$F4 3069
6 TraesCS1A01G008000 chr1D 4342117 4343473 1356 False 1018.000000 1018 81.014000 1627 2967 1 chr1D.!!$F1 1340
7 TraesCS1A01G008000 chr1D 7154922 7156331 1409 True 1014.000000 1014 80.511000 1588 2967 1 chr1D.!!$R2 1379
8 TraesCS1A01G008000 chr1D 5356113 5358005 1892 False 879.000000 889 85.387500 339 2706 2 chr1D.!!$F5 2367
9 TraesCS1A01G008000 chr1D 3841322 3841900 578 True 625.000000 625 86.139000 339 940 1 chr1D.!!$R1 601
10 TraesCS1A01G008000 chr1D 3707265 3711149 3884 True 439.000000 763 89.106500 345 3116 2 chr1D.!!$R3 2771
11 TraesCS1A01G008000 chr1B 5686273 5688376 2103 True 1069.000000 1164 88.038000 309 2712 2 chr1B.!!$R7 2403
12 TraesCS1A01G008000 chr1B 22186015 22187404 1389 False 998.000000 998 80.462000 1604 2967 1 chr1B.!!$F1 1363
13 TraesCS1A01G008000 chr1B 6435817 6437224 1407 True 990.000000 990 80.194000 1588 2967 1 chr1B.!!$R3 1379
14 TraesCS1A01G008000 chr1B 5519359 5521158 1799 True 923.000000 1201 86.001000 595 2712 2 chr1B.!!$R5 2117
15 TraesCS1A01G008000 chr1B 5583346 5585887 2541 True 862.333333 1618 88.632333 586 3374 3 chr1B.!!$R6 2788

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
243 244 0.101399 ATAACTCGCTCGAGGCTGTG 59.899 55.0 21.34 0.00 45.88 3.66 F
1124 1454 0.031857 CCACCATTTTCGCAGCAACA 59.968 50.0 0.00 0.00 0.00 3.33 F
1702 2407 0.038526 AATTTCACAGCAGCAGCAGC 60.039 50.0 3.17 0.46 45.49 5.25 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1165 1495 0.108424 GGTGGTTGTTGTTGCTGCAA 60.108 50.0 11.69 11.69 0.00 4.08 R
2065 3137 0.179132 TGTTGTTGTTGCTGCTGCTG 60.179 50.0 17.00 0.77 40.48 4.41 R
3275 6290 0.033601 TTATGAGCCGCCCAAACCAT 60.034 50.0 0.00 0.00 0.00 3.55 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
35 36 3.172575 CGCACGTACGTGGAGCAG 61.173 66.667 40.17 22.34 45.49 4.24
36 37 3.479269 GCACGTACGTGGAGCAGC 61.479 66.667 40.17 25.99 45.49 5.25
37 38 2.809601 CACGTACGTGGAGCAGCC 60.810 66.667 35.09 0.00 42.00 4.85
38 39 4.415332 ACGTACGTGGAGCAGCCG 62.415 66.667 22.14 0.00 40.66 5.52
105 106 4.862823 GAGGAGGACGGGGAGGGG 62.863 77.778 0.00 0.00 0.00 4.79
108 109 4.862823 GAGGACGGGGAGGGGGAG 62.863 77.778 0.00 0.00 0.00 4.30
110 111 4.173701 GGACGGGGAGGGGGAGAT 62.174 72.222 0.00 0.00 0.00 2.75
111 112 2.844839 GACGGGGAGGGGGAGATG 60.845 72.222 0.00 0.00 0.00 2.90
112 113 3.364964 ACGGGGAGGGGGAGATGA 61.365 66.667 0.00 0.00 0.00 2.92
113 114 2.040884 CGGGGAGGGGGAGATGAA 60.041 66.667 0.00 0.00 0.00 2.57
114 115 2.143419 CGGGGAGGGGGAGATGAAG 61.143 68.421 0.00 0.00 0.00 3.02
115 116 1.318380 GGGGAGGGGGAGATGAAGA 59.682 63.158 0.00 0.00 0.00 2.87
116 117 1.057275 GGGGAGGGGGAGATGAAGAC 61.057 65.000 0.00 0.00 0.00 3.01
117 118 1.403687 GGGAGGGGGAGATGAAGACG 61.404 65.000 0.00 0.00 0.00 4.18
118 119 0.397254 GGAGGGGGAGATGAAGACGA 60.397 60.000 0.00 0.00 0.00 4.20
119 120 1.710816 GAGGGGGAGATGAAGACGAT 58.289 55.000 0.00 0.00 0.00 3.73
120 121 1.342819 GAGGGGGAGATGAAGACGATG 59.657 57.143 0.00 0.00 0.00 3.84
121 122 0.250081 GGGGGAGATGAAGACGATGC 60.250 60.000 0.00 0.00 0.00 3.91
122 123 0.465705 GGGGAGATGAAGACGATGCA 59.534 55.000 0.00 0.00 0.00 3.96
123 124 1.539929 GGGGAGATGAAGACGATGCAG 60.540 57.143 0.00 0.00 0.00 4.41
124 125 1.410517 GGGAGATGAAGACGATGCAGA 59.589 52.381 0.00 0.00 0.00 4.26
125 126 2.036992 GGGAGATGAAGACGATGCAGAT 59.963 50.000 0.00 0.00 0.00 2.90
126 127 3.316283 GGAGATGAAGACGATGCAGATC 58.684 50.000 0.00 0.00 0.00 2.75
133 134 2.732468 CGATGCAGATCGGCCGAG 60.732 66.667 33.87 20.95 46.51 4.63
134 135 2.419198 GATGCAGATCGGCCGAGT 59.581 61.111 33.87 20.46 0.00 4.18
135 136 1.953138 GATGCAGATCGGCCGAGTG 60.953 63.158 33.87 30.45 0.00 3.51
136 137 2.635229 GATGCAGATCGGCCGAGTGT 62.635 60.000 33.87 17.71 0.00 3.55
137 138 2.887568 GCAGATCGGCCGAGTGTG 60.888 66.667 33.87 27.69 0.00 3.82
138 139 2.202797 CAGATCGGCCGAGTGTGG 60.203 66.667 33.87 16.47 0.00 4.17
139 140 3.461773 AGATCGGCCGAGTGTGGG 61.462 66.667 33.87 0.00 0.00 4.61
145 146 4.840005 GCCGAGTGTGGGCTAGGC 62.840 72.222 8.00 8.00 46.74 3.93
146 147 3.077556 CCGAGTGTGGGCTAGGCT 61.078 66.667 16.80 0.00 0.00 4.58
147 148 2.660064 CCGAGTGTGGGCTAGGCTT 61.660 63.158 16.80 0.00 0.00 4.35
148 149 1.448540 CGAGTGTGGGCTAGGCTTG 60.449 63.158 16.80 0.00 0.00 4.01
149 150 1.679898 GAGTGTGGGCTAGGCTTGT 59.320 57.895 16.80 0.00 0.00 3.16
150 151 0.674895 GAGTGTGGGCTAGGCTTGTG 60.675 60.000 16.80 0.00 0.00 3.33
151 152 1.127567 AGTGTGGGCTAGGCTTGTGA 61.128 55.000 16.80 0.00 0.00 3.58
152 153 0.955919 GTGTGGGCTAGGCTTGTGAC 60.956 60.000 16.80 6.20 0.00 3.67
153 154 1.741770 GTGGGCTAGGCTTGTGACG 60.742 63.158 16.80 0.00 0.00 4.35
154 155 2.214216 TGGGCTAGGCTTGTGACGT 61.214 57.895 16.80 0.00 0.00 4.34
155 156 1.003718 GGGCTAGGCTTGTGACGTT 60.004 57.895 16.80 0.00 0.00 3.99
156 157 1.298859 GGGCTAGGCTTGTGACGTTG 61.299 60.000 16.80 0.00 0.00 4.10
157 158 0.320421 GGCTAGGCTTGTGACGTTGA 60.320 55.000 9.46 0.00 0.00 3.18
158 159 1.071605 GCTAGGCTTGTGACGTTGAG 58.928 55.000 0.00 0.00 0.00 3.02
159 160 1.714794 CTAGGCTTGTGACGTTGAGG 58.285 55.000 0.00 0.00 0.00 3.86
160 161 0.320421 TAGGCTTGTGACGTTGAGGC 60.320 55.000 0.00 0.00 35.17 4.70
161 162 2.617274 GGCTTGTGACGTTGAGGCC 61.617 63.158 0.00 0.00 0.00 5.19
162 163 1.598130 GCTTGTGACGTTGAGGCCT 60.598 57.895 3.86 3.86 0.00 5.19
163 164 1.569479 GCTTGTGACGTTGAGGCCTC 61.569 60.000 26.78 26.78 0.00 4.70
164 165 0.951040 CTTGTGACGTTGAGGCCTCC 60.951 60.000 29.95 14.48 0.00 4.30
165 166 2.432628 GTGACGTTGAGGCCTCCG 60.433 66.667 29.95 26.88 0.00 4.63
166 167 2.599281 TGACGTTGAGGCCTCCGA 60.599 61.111 30.45 18.05 0.00 4.55
167 168 2.204461 TGACGTTGAGGCCTCCGAA 61.204 57.895 30.45 18.03 0.00 4.30
168 169 1.005394 GACGTTGAGGCCTCCGAAA 60.005 57.895 30.45 17.36 0.00 3.46
169 170 0.601841 GACGTTGAGGCCTCCGAAAA 60.602 55.000 30.45 17.02 0.00 2.29
170 171 0.883370 ACGTTGAGGCCTCCGAAAAC 60.883 55.000 30.45 24.73 0.00 2.43
171 172 0.602905 CGTTGAGGCCTCCGAAAACT 60.603 55.000 29.95 0.00 0.00 2.66
172 173 1.337447 CGTTGAGGCCTCCGAAAACTA 60.337 52.381 29.95 5.60 0.00 2.24
173 174 2.677037 CGTTGAGGCCTCCGAAAACTAT 60.677 50.000 29.95 0.00 0.00 2.12
174 175 3.429822 CGTTGAGGCCTCCGAAAACTATA 60.430 47.826 29.95 3.96 0.00 1.31
175 176 4.120589 GTTGAGGCCTCCGAAAACTATAG 58.879 47.826 29.95 0.00 0.00 1.31
176 177 2.102588 TGAGGCCTCCGAAAACTATAGC 59.897 50.000 29.95 0.36 0.00 2.97
177 178 1.416772 AGGCCTCCGAAAACTATAGCC 59.583 52.381 0.00 0.00 39.49 3.93
178 179 1.542767 GGCCTCCGAAAACTATAGCCC 60.543 57.143 0.00 0.00 32.93 5.19
179 180 1.140252 GCCTCCGAAAACTATAGCCCA 59.860 52.381 0.00 0.00 0.00 5.36
180 181 2.420967 GCCTCCGAAAACTATAGCCCAA 60.421 50.000 0.00 0.00 0.00 4.12
181 182 3.747708 GCCTCCGAAAACTATAGCCCAAT 60.748 47.826 0.00 0.00 0.00 3.16
182 183 4.461198 CCTCCGAAAACTATAGCCCAATT 58.539 43.478 0.00 0.00 0.00 2.32
183 184 4.515567 CCTCCGAAAACTATAGCCCAATTC 59.484 45.833 0.00 0.00 0.00 2.17
184 185 5.367945 TCCGAAAACTATAGCCCAATTCT 57.632 39.130 0.00 0.00 0.00 2.40
185 186 6.463897 CCTCCGAAAACTATAGCCCAATTCTA 60.464 42.308 0.00 0.00 0.00 2.10
186 187 6.891388 TCCGAAAACTATAGCCCAATTCTAA 58.109 36.000 0.00 0.00 0.00 2.10
187 188 7.514721 TCCGAAAACTATAGCCCAATTCTAAT 58.485 34.615 0.00 0.00 0.00 1.73
188 189 7.996644 TCCGAAAACTATAGCCCAATTCTAATT 59.003 33.333 0.00 0.00 0.00 1.40
189 190 8.630037 CCGAAAACTATAGCCCAATTCTAATTT 58.370 33.333 0.00 0.00 0.00 1.82
190 191 9.450807 CGAAAACTATAGCCCAATTCTAATTTG 57.549 33.333 0.00 0.00 0.00 2.32
191 192 9.750125 GAAAACTATAGCCCAATTCTAATTTGG 57.250 33.333 0.00 2.01 35.04 3.28
192 193 8.838649 AAACTATAGCCCAATTCTAATTTGGT 57.161 30.769 0.00 1.27 34.56 3.67
193 194 7.823745 ACTATAGCCCAATTCTAATTTGGTG 57.176 36.000 0.00 0.00 34.56 4.17
194 195 6.777580 ACTATAGCCCAATTCTAATTTGGTGG 59.222 38.462 0.00 0.00 34.56 4.61
195 196 2.501316 AGCCCAATTCTAATTTGGTGGC 59.499 45.455 7.23 7.01 34.56 5.01
196 197 2.419990 GCCCAATTCTAATTTGGTGGCC 60.420 50.000 0.00 0.00 34.56 5.36
197 198 3.106827 CCCAATTCTAATTTGGTGGCCT 58.893 45.455 3.32 0.00 0.00 5.19
198 199 4.285863 CCCAATTCTAATTTGGTGGCCTA 58.714 43.478 3.32 0.00 0.00 3.93
199 200 4.714308 CCCAATTCTAATTTGGTGGCCTAA 59.286 41.667 3.32 0.00 0.00 2.69
200 201 5.395214 CCCAATTCTAATTTGGTGGCCTAAC 60.395 44.000 3.32 0.00 0.00 2.34
201 202 5.186797 CCAATTCTAATTTGGTGGCCTAACA 59.813 40.000 3.32 0.00 0.00 2.41
202 203 5.914898 ATTCTAATTTGGTGGCCTAACAC 57.085 39.130 3.32 0.00 40.60 3.32
203 204 4.374689 TCTAATTTGGTGGCCTAACACA 57.625 40.909 3.32 0.00 43.08 3.72
204 205 4.076394 TCTAATTTGGTGGCCTAACACAC 58.924 43.478 3.32 0.00 43.08 3.82
205 206 2.373335 ATTTGGTGGCCTAACACACA 57.627 45.000 3.32 0.00 43.08 3.72
206 207 2.145397 TTTGGTGGCCTAACACACAA 57.855 45.000 3.32 0.00 43.08 3.33
207 208 1.394618 TTGGTGGCCTAACACACAAC 58.605 50.000 3.32 0.00 43.08 3.32
208 209 0.548989 TGGTGGCCTAACACACAACT 59.451 50.000 3.32 0.00 43.08 3.16
209 210 1.235724 GGTGGCCTAACACACAACTC 58.764 55.000 3.32 0.00 43.08 3.01
210 211 1.202770 GGTGGCCTAACACACAACTCT 60.203 52.381 3.32 0.00 43.08 3.24
211 212 2.572290 GTGGCCTAACACACAACTCTT 58.428 47.619 3.32 0.00 40.99 2.85
212 213 3.495453 GGTGGCCTAACACACAACTCTTA 60.495 47.826 3.32 0.00 43.08 2.10
213 214 4.324267 GTGGCCTAACACACAACTCTTAT 58.676 43.478 3.32 0.00 40.99 1.73
214 215 5.484715 GTGGCCTAACACACAACTCTTATA 58.515 41.667 3.32 0.00 40.99 0.98
215 216 6.113411 GTGGCCTAACACACAACTCTTATAT 58.887 40.000 3.32 0.00 40.99 0.86
216 217 6.598064 GTGGCCTAACACACAACTCTTATATT 59.402 38.462 3.32 0.00 40.99 1.28
217 218 6.597672 TGGCCTAACACACAACTCTTATATTG 59.402 38.462 3.32 0.00 0.00 1.90
218 219 6.038271 GGCCTAACACACAACTCTTATATTGG 59.962 42.308 0.00 0.00 0.00 3.16
219 220 6.038271 GCCTAACACACAACTCTTATATTGGG 59.962 42.308 0.00 0.00 35.25 4.12
220 221 5.897377 AACACACAACTCTTATATTGGGC 57.103 39.130 0.00 0.00 32.12 5.36
221 222 4.270008 ACACACAACTCTTATATTGGGCC 58.730 43.478 0.00 0.00 32.12 5.80
222 223 4.018415 ACACACAACTCTTATATTGGGCCT 60.018 41.667 4.53 0.00 32.12 5.19
223 224 5.190925 ACACACAACTCTTATATTGGGCCTA 59.809 40.000 4.53 0.00 32.12 3.93
224 225 6.119536 CACACAACTCTTATATTGGGCCTAA 58.880 40.000 3.11 3.11 32.12 2.69
225 226 6.772716 CACACAACTCTTATATTGGGCCTAAT 59.227 38.462 19.21 19.21 32.12 1.73
226 227 7.936847 CACACAACTCTTATATTGGGCCTAATA 59.063 37.037 22.29 22.29 32.12 0.98
227 228 8.499406 ACACAACTCTTATATTGGGCCTAATAA 58.501 33.333 23.61 10.74 32.12 1.40
228 229 8.784043 CACAACTCTTATATTGGGCCTAATAAC 58.216 37.037 23.61 0.00 0.00 1.89
229 230 8.724310 ACAACTCTTATATTGGGCCTAATAACT 58.276 33.333 23.61 12.09 0.00 2.24
230 231 9.220767 CAACTCTTATATTGGGCCTAATAACTC 57.779 37.037 23.61 0.00 0.00 3.01
231 232 7.612677 ACTCTTATATTGGGCCTAATAACTCG 58.387 38.462 23.61 13.87 0.00 4.18
232 233 6.403878 TCTTATATTGGGCCTAATAACTCGC 58.596 40.000 23.61 0.00 0.00 5.03
233 234 4.910458 ATATTGGGCCTAATAACTCGCT 57.090 40.909 23.61 5.21 0.00 4.93
234 235 2.614829 TTGGGCCTAATAACTCGCTC 57.385 50.000 4.53 0.00 0.00 5.03
235 236 0.387929 TGGGCCTAATAACTCGCTCG 59.612 55.000 4.53 0.00 0.00 5.03
236 237 0.672342 GGGCCTAATAACTCGCTCGA 59.328 55.000 0.84 0.00 0.00 4.04
237 238 1.336056 GGGCCTAATAACTCGCTCGAG 60.336 57.143 16.71 16.71 46.91 4.04
238 239 1.336056 GGCCTAATAACTCGCTCGAGG 60.336 57.143 21.34 4.50 45.88 4.63
239 240 1.931263 GCCTAATAACTCGCTCGAGGC 60.931 57.143 21.34 11.48 45.88 4.70
240 241 1.609555 CCTAATAACTCGCTCGAGGCT 59.390 52.381 21.34 11.58 45.88 4.58
241 242 2.605823 CCTAATAACTCGCTCGAGGCTG 60.606 54.545 21.34 5.14 45.88 4.85
242 243 0.818296 AATAACTCGCTCGAGGCTGT 59.182 50.000 21.34 5.71 45.88 4.40
243 244 0.101399 ATAACTCGCTCGAGGCTGTG 59.899 55.000 21.34 0.00 45.88 3.66
244 245 1.934220 TAACTCGCTCGAGGCTGTGG 61.934 60.000 21.34 0.00 45.88 4.17
245 246 4.504916 CTCGCTCGAGGCTGTGGG 62.505 72.222 15.58 0.00 38.51 4.61
255 256 2.360475 GCTGTGGGCCTCTGTTCC 60.360 66.667 4.53 0.00 34.27 3.62
256 257 3.160585 CTGTGGGCCTCTGTTCCA 58.839 61.111 4.53 0.00 0.00 3.53
257 258 1.002868 CTGTGGGCCTCTGTTCCAG 60.003 63.158 4.53 0.00 0.00 3.86
258 259 2.360475 GTGGGCCTCTGTTCCAGC 60.360 66.667 4.53 0.00 0.00 4.85
259 260 3.650950 TGGGCCTCTGTTCCAGCC 61.651 66.667 4.53 0.00 44.99 4.85
261 262 4.432741 GGCCTCTGTTCCAGCCCC 62.433 72.222 0.00 0.00 39.60 5.80
262 263 3.650950 GCCTCTGTTCCAGCCCCA 61.651 66.667 0.00 0.00 0.00 4.96
263 264 2.352805 CCTCTGTTCCAGCCCCAC 59.647 66.667 0.00 0.00 0.00 4.61
264 265 2.352805 CTCTGTTCCAGCCCCACC 59.647 66.667 0.00 0.00 0.00 4.61
265 266 2.121963 TCTGTTCCAGCCCCACCT 60.122 61.111 0.00 0.00 0.00 4.00
266 267 0.909610 CTCTGTTCCAGCCCCACCTA 60.910 60.000 0.00 0.00 0.00 3.08
267 268 0.253160 TCTGTTCCAGCCCCACCTAT 60.253 55.000 0.00 0.00 0.00 2.57
268 269 0.181350 CTGTTCCAGCCCCACCTATC 59.819 60.000 0.00 0.00 0.00 2.08
269 270 0.548926 TGTTCCAGCCCCACCTATCA 60.549 55.000 0.00 0.00 0.00 2.15
270 271 0.846693 GTTCCAGCCCCACCTATCAT 59.153 55.000 0.00 0.00 0.00 2.45
271 272 1.215423 GTTCCAGCCCCACCTATCATT 59.785 52.381 0.00 0.00 0.00 2.57
272 273 1.607225 TCCAGCCCCACCTATCATTT 58.393 50.000 0.00 0.00 0.00 2.32
273 274 1.494721 TCCAGCCCCACCTATCATTTC 59.505 52.381 0.00 0.00 0.00 2.17
274 275 1.479389 CCAGCCCCACCTATCATTTCC 60.479 57.143 0.00 0.00 0.00 3.13
275 276 0.853530 AGCCCCACCTATCATTTCCC 59.146 55.000 0.00 0.00 0.00 3.97
276 277 0.853530 GCCCCACCTATCATTTCCCT 59.146 55.000 0.00 0.00 0.00 4.20
277 278 1.217942 GCCCCACCTATCATTTCCCTT 59.782 52.381 0.00 0.00 0.00 3.95
278 279 2.753168 GCCCCACCTATCATTTCCCTTC 60.753 54.545 0.00 0.00 0.00 3.46
279 280 2.513738 CCCCACCTATCATTTCCCTTCA 59.486 50.000 0.00 0.00 0.00 3.02
280 281 3.555966 CCCACCTATCATTTCCCTTCAC 58.444 50.000 0.00 0.00 0.00 3.18
281 282 3.555966 CCACCTATCATTTCCCTTCACC 58.444 50.000 0.00 0.00 0.00 4.02
282 283 3.555966 CACCTATCATTTCCCTTCACCC 58.444 50.000 0.00 0.00 0.00 4.61
283 284 3.053693 CACCTATCATTTCCCTTCACCCA 60.054 47.826 0.00 0.00 0.00 4.51
284 285 3.596046 ACCTATCATTTCCCTTCACCCAA 59.404 43.478 0.00 0.00 0.00 4.12
285 286 4.045334 ACCTATCATTTCCCTTCACCCAAA 59.955 41.667 0.00 0.00 0.00 3.28
286 287 5.022787 CCTATCATTTCCCTTCACCCAAAA 58.977 41.667 0.00 0.00 0.00 2.44
287 288 5.483583 CCTATCATTTCCCTTCACCCAAAAA 59.516 40.000 0.00 0.00 0.00 1.94
389 390 5.652891 AGTTAGGACCGGATATATGCTAGTG 59.347 44.000 9.46 0.00 0.00 2.74
432 518 5.852282 ACCATCATTTACATGTAAAGGGC 57.148 39.130 31.55 0.00 38.30 5.19
436 522 7.092935 ACCATCATTTACATGTAAAGGGCATTT 60.093 33.333 31.55 15.15 38.30 2.32
457 543 3.793559 TGATGAGTCATGTCATGCTCTG 58.206 45.455 24.82 2.44 37.29 3.35
549 640 1.070786 GAACCCTCCACACGCAAGA 59.929 57.895 0.00 0.00 43.62 3.02
553 644 0.951040 CCCTCCACACGCAAGACTTC 60.951 60.000 0.00 0.00 43.62 3.01
610 701 6.293190 CGATTGCAAACTTAGTCCTACACAAA 60.293 38.462 1.71 0.00 0.00 2.83
691 782 8.768955 CAAAAGTGATACTATCCTGATAAGTGC 58.231 37.037 0.00 0.00 0.00 4.40
778 869 9.655769 GTGTATGATCATATGCACAACTAAAAG 57.344 33.333 22.40 0.00 41.47 2.27
809 904 5.185454 TGATGATGAATCCAAAAGTACGCT 58.815 37.500 0.00 0.00 34.00 5.07
810 905 5.647658 TGATGATGAATCCAAAAGTACGCTT 59.352 36.000 0.00 0.00 34.00 4.68
828 924 2.095212 GCTTTTGTAGCTAGTGCAACCC 60.095 50.000 0.00 0.00 46.77 4.11
884 982 7.041107 TGCATCCAAACAGAATTATTAAAGCC 58.959 34.615 0.00 0.00 0.00 4.35
886 984 6.202516 TCCAAACAGAATTATTAAAGCCGG 57.797 37.500 0.00 0.00 0.00 6.13
901 1000 0.387565 GCCGGTGCAAAGAAGGAAAA 59.612 50.000 1.90 0.00 37.47 2.29
911 1010 3.953542 AAGAAGGAAAAGAGGTGGTGT 57.046 42.857 0.00 0.00 0.00 4.16
914 1013 0.771755 AGGAAAAGAGGTGGTGTCCC 59.228 55.000 0.00 0.00 0.00 4.46
918 1017 4.954118 AGAGGTGGTGTCCCGGCA 62.954 66.667 0.00 0.00 0.00 5.69
969 1068 3.358707 TCACAAGCACAAGCATCAAAG 57.641 42.857 0.00 0.00 45.49 2.77
974 1073 1.413445 AGCACAAGCATCAAAGCCAAA 59.587 42.857 0.00 0.00 45.49 3.28
1123 1453 0.031994 ACCACCATTTTCGCAGCAAC 59.968 50.000 0.00 0.00 0.00 4.17
1124 1454 0.031857 CCACCATTTTCGCAGCAACA 59.968 50.000 0.00 0.00 0.00 3.33
1125 1455 1.411394 CACCATTTTCGCAGCAACAG 58.589 50.000 0.00 0.00 0.00 3.16
1126 1456 0.318955 ACCATTTTCGCAGCAACAGC 60.319 50.000 0.00 0.00 0.00 4.40
1127 1457 0.318869 CCATTTTCGCAGCAACAGCA 60.319 50.000 0.00 0.00 0.00 4.41
1128 1458 1.489574 CATTTTCGCAGCAACAGCAA 58.510 45.000 0.00 0.00 0.00 3.91
1129 1459 2.063266 CATTTTCGCAGCAACAGCAAT 58.937 42.857 0.00 0.00 0.00 3.56
1130 1460 1.769733 TTTTCGCAGCAACAGCAATC 58.230 45.000 0.00 0.00 0.00 2.67
1131 1461 0.667453 TTTCGCAGCAACAGCAATCA 59.333 45.000 0.00 0.00 0.00 2.57
1132 1462 0.040157 TTCGCAGCAACAGCAATCAC 60.040 50.000 0.00 0.00 0.00 3.06
1133 1463 1.443194 CGCAGCAACAGCAATCACC 60.443 57.895 0.00 0.00 0.00 4.02
1134 1464 1.661480 GCAGCAACAGCAATCACCA 59.339 52.632 0.00 0.00 0.00 4.17
1135 1465 0.245539 GCAGCAACAGCAATCACCAT 59.754 50.000 0.00 0.00 0.00 3.55
1136 1466 1.337447 GCAGCAACAGCAATCACCATT 60.337 47.619 0.00 0.00 0.00 3.16
1137 1467 2.868839 GCAGCAACAGCAATCACCATTT 60.869 45.455 0.00 0.00 0.00 2.32
1138 1468 3.395639 CAGCAACAGCAATCACCATTTT 58.604 40.909 0.00 0.00 0.00 1.82
1139 1469 3.430895 CAGCAACAGCAATCACCATTTTC 59.569 43.478 0.00 0.00 0.00 2.29
1140 1470 2.409378 GCAACAGCAATCACCATTTTCG 59.591 45.455 0.00 0.00 0.00 3.46
1157 1487 1.983972 TCGCAACAACAACAACAACC 58.016 45.000 0.00 0.00 0.00 3.77
1160 1490 1.729517 GCAACAACAACAACAACCACC 59.270 47.619 0.00 0.00 0.00 4.61
1161 1491 2.868044 GCAACAACAACAACAACCACCA 60.868 45.455 0.00 0.00 0.00 4.17
1162 1492 3.594134 CAACAACAACAACAACCACCAT 58.406 40.909 0.00 0.00 0.00 3.55
1163 1493 3.971245 ACAACAACAACAACCACCATT 57.029 38.095 0.00 0.00 0.00 3.16
1164 1494 4.278975 ACAACAACAACAACCACCATTT 57.721 36.364 0.00 0.00 0.00 2.32
1165 1495 4.646572 ACAACAACAACAACCACCATTTT 58.353 34.783 0.00 0.00 0.00 1.82
1166 1496 5.066593 ACAACAACAACAACCACCATTTTT 58.933 33.333 0.00 0.00 0.00 1.94
1183 1513 1.719600 TTTGCAGCAACAACAACCAC 58.280 45.000 7.54 0.00 0.00 4.16
1184 1514 0.108424 TTGCAGCAACAACAACCACC 60.108 50.000 2.83 0.00 0.00 4.61
1185 1515 1.588667 GCAGCAACAACAACCACCG 60.589 57.895 0.00 0.00 0.00 4.94
1195 1726 2.640346 ACAACCACCGTTTTCACAAC 57.360 45.000 0.00 0.00 0.00 3.32
1196 1727 1.887198 ACAACCACCGTTTTCACAACA 59.113 42.857 0.00 0.00 0.00 3.33
1197 1728 2.094957 ACAACCACCGTTTTCACAACAG 60.095 45.455 0.00 0.00 0.00 3.16
1198 1729 0.454196 ACCACCGTTTTCACAACAGC 59.546 50.000 0.00 0.00 0.00 4.40
1199 1730 0.248866 CCACCGTTTTCACAACAGCC 60.249 55.000 0.00 0.00 0.00 4.85
1200 1731 0.453793 CACCGTTTTCACAACAGCCA 59.546 50.000 0.00 0.00 0.00 4.75
1201 1732 0.454196 ACCGTTTTCACAACAGCCAC 59.546 50.000 0.00 0.00 0.00 5.01
1202 1733 0.248866 CCGTTTTCACAACAGCCACC 60.249 55.000 0.00 0.00 0.00 4.61
1203 1734 0.453793 CGTTTTCACAACAGCCACCA 59.546 50.000 0.00 0.00 0.00 4.17
1204 1735 1.135257 CGTTTTCACAACAGCCACCAA 60.135 47.619 0.00 0.00 0.00 3.67
1205 1736 2.481104 CGTTTTCACAACAGCCACCAAT 60.481 45.455 0.00 0.00 0.00 3.16
1206 1737 3.530535 GTTTTCACAACAGCCACCAATT 58.469 40.909 0.00 0.00 0.00 2.32
1207 1738 3.902881 TTTCACAACAGCCACCAATTT 57.097 38.095 0.00 0.00 0.00 1.82
1208 1739 3.451141 TTCACAACAGCCACCAATTTC 57.549 42.857 0.00 0.00 0.00 2.17
1209 1740 2.382882 TCACAACAGCCACCAATTTCA 58.617 42.857 0.00 0.00 0.00 2.69
1210 1741 2.100584 TCACAACAGCCACCAATTTCAC 59.899 45.455 0.00 0.00 0.00 3.18
1211 1742 2.106566 ACAACAGCCACCAATTTCACA 58.893 42.857 0.00 0.00 0.00 3.58
1212 1743 2.101249 ACAACAGCCACCAATTTCACAG 59.899 45.455 0.00 0.00 0.00 3.66
1213 1744 0.675633 ACAGCCACCAATTTCACAGC 59.324 50.000 0.00 0.00 0.00 4.40
1214 1745 0.675083 CAGCCACCAATTTCACAGCA 59.325 50.000 0.00 0.00 0.00 4.41
1215 1746 0.963962 AGCCACCAATTTCACAGCAG 59.036 50.000 0.00 0.00 0.00 4.24
1219 1750 2.129607 CACCAATTTCACAGCAGCAAC 58.870 47.619 0.00 0.00 0.00 4.17
1221 1752 2.168106 ACCAATTTCACAGCAGCAACAA 59.832 40.909 0.00 0.00 0.00 2.83
1229 1760 0.390124 CAGCAGCAACAACCACCATT 59.610 50.000 0.00 0.00 0.00 3.16
1252 1783 2.495270 TCACAGCAACAACAACCACAAT 59.505 40.909 0.00 0.00 0.00 2.71
1253 1784 3.056250 TCACAGCAACAACAACCACAATT 60.056 39.130 0.00 0.00 0.00 2.32
1619 2192 3.688673 CAGCAACAACAACCACCATTTTT 59.311 39.130 0.00 0.00 0.00 1.94
1645 2350 4.081420 AGCAACAACAACAACCACCATTTA 60.081 37.500 0.00 0.00 0.00 1.40
1663 2368 4.727507 TTTACACAGCAACAACAACCAT 57.272 36.364 0.00 0.00 0.00 3.55
1687 2392 3.902881 TTTCACAACAGCCACCAATTT 57.097 38.095 0.00 0.00 0.00 1.82
1688 2393 3.451141 TTCACAACAGCCACCAATTTC 57.549 42.857 0.00 0.00 0.00 2.17
1689 2394 2.382882 TCACAACAGCCACCAATTTCA 58.617 42.857 0.00 0.00 0.00 2.69
1690 2395 2.100584 TCACAACAGCCACCAATTTCAC 59.899 45.455 0.00 0.00 0.00 3.18
1691 2396 2.106566 ACAACAGCCACCAATTTCACA 58.893 42.857 0.00 0.00 0.00 3.58
1692 2397 2.101249 ACAACAGCCACCAATTTCACAG 59.899 45.455 0.00 0.00 0.00 3.66
1693 2398 0.675633 ACAGCCACCAATTTCACAGC 59.324 50.000 0.00 0.00 0.00 4.40
1694 2399 0.675083 CAGCCACCAATTTCACAGCA 59.325 50.000 0.00 0.00 0.00 4.41
1695 2400 0.963962 AGCCACCAATTTCACAGCAG 59.036 50.000 0.00 0.00 0.00 4.24
1696 2401 0.668401 GCCACCAATTTCACAGCAGC 60.668 55.000 0.00 0.00 0.00 5.25
1697 2402 0.675083 CCACCAATTTCACAGCAGCA 59.325 50.000 0.00 0.00 0.00 4.41
1698 2403 1.336517 CCACCAATTTCACAGCAGCAG 60.337 52.381 0.00 0.00 0.00 4.24
1699 2404 0.316204 ACCAATTTCACAGCAGCAGC 59.684 50.000 0.00 0.00 42.56 5.25
1700 2405 0.315886 CCAATTTCACAGCAGCAGCA 59.684 50.000 3.17 0.00 45.49 4.41
1701 2406 1.668919 CCAATTTCACAGCAGCAGCAG 60.669 52.381 3.17 0.00 45.49 4.24
1702 2407 0.038526 AATTTCACAGCAGCAGCAGC 60.039 50.000 3.17 0.46 45.49 5.25
1703 2408 1.176619 ATTTCACAGCAGCAGCAGCA 61.177 50.000 12.92 0.00 45.49 4.41
1704 2409 1.792118 TTTCACAGCAGCAGCAGCAG 61.792 55.000 12.92 6.60 45.49 4.24
1721 2607 2.064762 GCAGCAACAACAACAACAACA 58.935 42.857 0.00 0.00 0.00 3.33
1729 2615 6.347725 GCAACAACAACAACAACAACCATTTA 60.348 34.615 0.00 0.00 0.00 1.40
1749 2641 0.529833 CACAGCAACAACAACCACCA 59.470 50.000 0.00 0.00 0.00 4.17
1779 2671 0.963962 AGCCACCAATTTCACAGCAG 59.036 50.000 0.00 0.00 0.00 4.24
2064 3136 3.825585 TCTACTCTATCATCCTGCAGCAG 59.174 47.826 16.23 16.23 0.00 4.24
2065 3137 1.070445 ACTCTATCATCCTGCAGCAGC 59.930 52.381 17.81 0.00 42.57 5.25
2114 3186 5.467738 ACAGGGTCAGAGTATCATCCAATA 58.532 41.667 0.00 0.00 37.82 1.90
2171 3243 1.457455 CCCAACCCCAACAGCAGTT 60.457 57.895 0.00 0.00 38.88 3.16
2217 3367 4.121317 CTCAACAACAACAATTGGCACAT 58.879 39.130 10.83 0.00 39.30 3.21
2292 3442 1.839747 ACTCCGTACCCTGCCAACA 60.840 57.895 0.00 0.00 0.00 3.33
2321 3471 1.141645 GTCAATGTGCCGTTGTACGA 58.858 50.000 0.05 0.00 46.05 3.43
2366 3516 0.889186 GTTGGCATCGGAGTTGGTGT 60.889 55.000 0.00 0.00 0.00 4.16
2434 3584 5.746721 CGTTGTTTAGTCGATGGATATGTCA 59.253 40.000 0.00 0.00 0.00 3.58
2582 3732 1.302366 GTCGATCTGATTGCCATGCA 58.698 50.000 0.00 0.00 36.47 3.96
2643 3793 7.323656 GCGCAACCTAGTGCATTAATTAATTAG 59.676 37.037 8.01 7.60 45.19 1.73
2849 4030 8.706492 TTCTTGCAAATACATTCATTGATTCC 57.294 30.769 0.00 0.00 0.00 3.01
2885 4072 9.760077 AACTTATTTGTCGAGAAAAAGACTAGA 57.240 29.630 23.57 0.20 38.16 2.43
3099 5922 4.636249 AGGAGCAGAAAACTTACTGTGAG 58.364 43.478 0.00 0.00 36.62 3.51
3195 6019 3.028850 TCGTAAGATAGGTTCACCAGGG 58.971 50.000 0.00 0.00 45.01 4.45
3206 6030 0.686441 TCACCAGGGGATACAGTCGG 60.686 60.000 0.00 0.00 39.74 4.79
3278 6293 7.693969 AGAAATTAGACCAAGAGAAACATGG 57.306 36.000 0.00 0.00 42.35 3.66
3284 6299 2.965147 ACCAAGAGAAACATGGTTTGGG 59.035 45.455 14.86 1.60 46.61 4.12
3285 6300 2.289010 CCAAGAGAAACATGGTTTGGGC 60.289 50.000 0.00 0.00 33.27 5.36
3286 6301 1.247567 AGAGAAACATGGTTTGGGCG 58.752 50.000 0.00 0.00 0.00 6.13
3287 6302 0.243636 GAGAAACATGGTTTGGGCGG 59.756 55.000 0.00 0.00 0.00 6.13
3288 6303 1.374125 GAAACATGGTTTGGGCGGC 60.374 57.895 0.00 0.00 0.00 6.53
3289 6304 1.815817 GAAACATGGTTTGGGCGGCT 61.816 55.000 9.56 0.00 0.00 5.52
3290 6305 1.815817 AAACATGGTTTGGGCGGCTC 61.816 55.000 9.56 0.00 0.00 4.70
3291 6306 2.676121 CATGGTTTGGGCGGCTCA 60.676 61.111 9.56 0.00 0.00 4.26
3292 6307 2.053865 CATGGTTTGGGCGGCTCAT 61.054 57.895 2.01 2.94 0.00 2.90
3293 6308 0.751277 CATGGTTTGGGCGGCTCATA 60.751 55.000 2.01 0.00 0.00 2.15
3294 6309 0.033601 ATGGTTTGGGCGGCTCATAA 60.034 50.000 2.01 0.00 0.00 1.90
3295 6310 0.033601 TGGTTTGGGCGGCTCATAAT 60.034 50.000 2.01 0.00 0.00 1.28
3296 6311 1.111277 GGTTTGGGCGGCTCATAATT 58.889 50.000 2.01 0.00 0.00 1.40
3297 6312 1.067060 GGTTTGGGCGGCTCATAATTC 59.933 52.381 2.01 0.00 0.00 2.17
3298 6313 2.024414 GTTTGGGCGGCTCATAATTCT 58.976 47.619 2.01 0.00 0.00 2.40
3299 6314 3.211045 GTTTGGGCGGCTCATAATTCTA 58.789 45.455 2.01 0.00 0.00 2.10
3300 6315 3.788227 TTGGGCGGCTCATAATTCTAT 57.212 42.857 2.01 0.00 0.00 1.98
3301 6316 4.901197 TTGGGCGGCTCATAATTCTATA 57.099 40.909 2.01 0.00 0.00 1.31
3302 6317 4.901197 TGGGCGGCTCATAATTCTATAA 57.099 40.909 9.56 0.00 0.00 0.98
3303 6318 4.832248 TGGGCGGCTCATAATTCTATAAG 58.168 43.478 9.56 0.00 0.00 1.73
3304 6319 4.530553 TGGGCGGCTCATAATTCTATAAGA 59.469 41.667 9.56 0.00 0.00 2.10
3305 6320 5.112686 GGGCGGCTCATAATTCTATAAGAG 58.887 45.833 9.56 0.00 0.00 2.85
3306 6321 5.337652 GGGCGGCTCATAATTCTATAAGAGT 60.338 44.000 9.56 0.00 0.00 3.24
3307 6322 6.127423 GGGCGGCTCATAATTCTATAAGAGTA 60.127 42.308 9.56 0.00 0.00 2.59
3308 6323 7.418025 GGGCGGCTCATAATTCTATAAGAGTAT 60.418 40.741 9.56 0.00 0.00 2.12
3309 6324 8.630917 GGCGGCTCATAATTCTATAAGAGTATA 58.369 37.037 0.00 0.00 0.00 1.47
3325 6340 9.696572 ATAAGAGTATAACAGGTTGTCTAGTCA 57.303 33.333 0.00 0.00 0.00 3.41
3326 6341 8.596781 AAGAGTATAACAGGTTGTCTAGTCAT 57.403 34.615 0.00 0.00 0.00 3.06
3327 6342 8.596781 AGAGTATAACAGGTTGTCTAGTCATT 57.403 34.615 0.00 0.00 0.00 2.57
3328 6343 9.036980 AGAGTATAACAGGTTGTCTAGTCATTT 57.963 33.333 0.00 0.00 0.00 2.32
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
18 19 3.172575 CTGCTCCACGTACGTGCG 61.173 66.667 36.76 29.30 44.16 5.34
19 20 3.479269 GCTGCTCCACGTACGTGC 61.479 66.667 36.76 27.70 44.16 5.34
20 21 2.809601 GGCTGCTCCACGTACGTG 60.810 66.667 35.57 35.57 45.02 4.49
21 22 4.415332 CGGCTGCTCCACGTACGT 62.415 66.667 16.72 16.72 34.01 3.57
88 89 4.862823 CCCCTCCCCGTCCTCCTC 62.863 77.778 0.00 0.00 0.00 3.71
91 92 4.862823 CTCCCCCTCCCCGTCCTC 62.863 77.778 0.00 0.00 0.00 3.71
93 94 4.173701 ATCTCCCCCTCCCCGTCC 62.174 72.222 0.00 0.00 0.00 4.79
94 95 2.844839 CATCTCCCCCTCCCCGTC 60.845 72.222 0.00 0.00 0.00 4.79
95 96 2.898472 CTTCATCTCCCCCTCCCCGT 62.898 65.000 0.00 0.00 0.00 5.28
96 97 2.040884 TTCATCTCCCCCTCCCCG 60.041 66.667 0.00 0.00 0.00 5.73
97 98 1.057275 GTCTTCATCTCCCCCTCCCC 61.057 65.000 0.00 0.00 0.00 4.81
98 99 1.403687 CGTCTTCATCTCCCCCTCCC 61.404 65.000 0.00 0.00 0.00 4.30
99 100 0.397254 TCGTCTTCATCTCCCCCTCC 60.397 60.000 0.00 0.00 0.00 4.30
100 101 1.342819 CATCGTCTTCATCTCCCCCTC 59.657 57.143 0.00 0.00 0.00 4.30
101 102 1.418334 CATCGTCTTCATCTCCCCCT 58.582 55.000 0.00 0.00 0.00 4.79
102 103 0.250081 GCATCGTCTTCATCTCCCCC 60.250 60.000 0.00 0.00 0.00 5.40
103 104 0.465705 TGCATCGTCTTCATCTCCCC 59.534 55.000 0.00 0.00 0.00 4.81
104 105 1.410517 TCTGCATCGTCTTCATCTCCC 59.589 52.381 0.00 0.00 0.00 4.30
105 106 2.879002 TCTGCATCGTCTTCATCTCC 57.121 50.000 0.00 0.00 0.00 3.71
106 107 2.979151 CGATCTGCATCGTCTTCATCTC 59.021 50.000 1.50 0.00 45.90 2.75
107 108 3.010624 CGATCTGCATCGTCTTCATCT 57.989 47.619 1.50 0.00 45.90 2.90
117 118 1.953138 CACTCGGCCGATCTGCATC 60.953 63.158 31.19 0.00 0.00 3.91
118 119 2.107750 CACTCGGCCGATCTGCAT 59.892 61.111 31.19 7.34 0.00 3.96
119 120 3.381983 ACACTCGGCCGATCTGCA 61.382 61.111 31.19 4.74 0.00 4.41
120 121 2.887568 CACACTCGGCCGATCTGC 60.888 66.667 31.19 0.00 0.00 4.26
121 122 2.202797 CCACACTCGGCCGATCTG 60.203 66.667 31.19 27.08 0.00 2.90
122 123 3.461773 CCCACACTCGGCCGATCT 61.462 66.667 31.19 14.49 0.00 2.75
129 130 2.660064 AAGCCTAGCCCACACTCGG 61.660 63.158 0.00 0.00 0.00 4.63
130 131 1.448540 CAAGCCTAGCCCACACTCG 60.449 63.158 0.00 0.00 0.00 4.18
131 132 0.674895 CACAAGCCTAGCCCACACTC 60.675 60.000 0.00 0.00 0.00 3.51
132 133 1.127567 TCACAAGCCTAGCCCACACT 61.128 55.000 0.00 0.00 0.00 3.55
133 134 0.955919 GTCACAAGCCTAGCCCACAC 60.956 60.000 0.00 0.00 0.00 3.82
134 135 1.374947 GTCACAAGCCTAGCCCACA 59.625 57.895 0.00 0.00 0.00 4.17
135 136 1.741770 CGTCACAAGCCTAGCCCAC 60.742 63.158 0.00 0.00 0.00 4.61
136 137 1.764571 AACGTCACAAGCCTAGCCCA 61.765 55.000 0.00 0.00 0.00 5.36
137 138 1.003718 AACGTCACAAGCCTAGCCC 60.004 57.895 0.00 0.00 0.00 5.19
138 139 0.320421 TCAACGTCACAAGCCTAGCC 60.320 55.000 0.00 0.00 0.00 3.93
139 140 1.071605 CTCAACGTCACAAGCCTAGC 58.928 55.000 0.00 0.00 0.00 3.42
140 141 1.714794 CCTCAACGTCACAAGCCTAG 58.285 55.000 0.00 0.00 0.00 3.02
141 142 0.320421 GCCTCAACGTCACAAGCCTA 60.320 55.000 0.00 0.00 0.00 3.93
142 143 1.598130 GCCTCAACGTCACAAGCCT 60.598 57.895 0.00 0.00 0.00 4.58
143 144 2.617274 GGCCTCAACGTCACAAGCC 61.617 63.158 0.00 0.00 0.00 4.35
144 145 1.569479 GAGGCCTCAACGTCACAAGC 61.569 60.000 28.43 0.00 0.00 4.01
145 146 0.951040 GGAGGCCTCAACGTCACAAG 60.951 60.000 33.29 0.00 0.00 3.16
146 147 1.070786 GGAGGCCTCAACGTCACAA 59.929 57.895 33.29 0.00 0.00 3.33
147 148 2.741092 GGAGGCCTCAACGTCACA 59.259 61.111 33.29 0.00 0.00 3.58
148 149 2.430382 TTCGGAGGCCTCAACGTCAC 62.430 60.000 33.29 13.59 0.00 3.67
149 150 1.750341 TTTCGGAGGCCTCAACGTCA 61.750 55.000 33.29 16.31 0.00 4.35
150 151 0.601841 TTTTCGGAGGCCTCAACGTC 60.602 55.000 33.29 15.07 0.00 4.34
151 152 0.883370 GTTTTCGGAGGCCTCAACGT 60.883 55.000 33.29 0.00 0.00 3.99
152 153 0.602905 AGTTTTCGGAGGCCTCAACG 60.603 55.000 33.29 26.88 0.00 4.10
153 154 2.467566 TAGTTTTCGGAGGCCTCAAC 57.532 50.000 33.29 26.29 0.00 3.18
154 155 3.431766 GCTATAGTTTTCGGAGGCCTCAA 60.432 47.826 33.29 17.90 0.00 3.02
155 156 2.102588 GCTATAGTTTTCGGAGGCCTCA 59.897 50.000 33.29 12.26 0.00 3.86
156 157 2.548280 GGCTATAGTTTTCGGAGGCCTC 60.548 54.545 25.59 25.59 35.92 4.70
157 158 1.416772 GGCTATAGTTTTCGGAGGCCT 59.583 52.381 3.86 3.86 35.92 5.19
158 159 1.542767 GGGCTATAGTTTTCGGAGGCC 60.543 57.143 0.00 0.00 44.48 5.19
159 160 1.140252 TGGGCTATAGTTTTCGGAGGC 59.860 52.381 0.84 0.00 0.00 4.70
160 161 3.553828 TTGGGCTATAGTTTTCGGAGG 57.446 47.619 0.84 0.00 0.00 4.30
161 162 5.368989 AGAATTGGGCTATAGTTTTCGGAG 58.631 41.667 0.84 0.00 0.00 4.63
162 163 5.367945 AGAATTGGGCTATAGTTTTCGGA 57.632 39.130 0.84 0.00 0.00 4.55
163 164 7.745620 ATTAGAATTGGGCTATAGTTTTCGG 57.254 36.000 0.84 0.00 0.00 4.30
164 165 9.450807 CAAATTAGAATTGGGCTATAGTTTTCG 57.549 33.333 0.84 0.00 0.00 3.46
165 166 9.750125 CCAAATTAGAATTGGGCTATAGTTTTC 57.250 33.333 0.84 0.00 42.95 2.29
178 179 6.099341 GTGTTAGGCCACCAAATTAGAATTG 58.901 40.000 5.01 0.00 0.00 2.32
179 180 5.777732 TGTGTTAGGCCACCAAATTAGAATT 59.222 36.000 5.01 0.00 34.35 2.17
180 181 5.185056 GTGTGTTAGGCCACCAAATTAGAAT 59.815 40.000 5.01 0.00 34.35 2.40
181 182 4.521256 GTGTGTTAGGCCACCAAATTAGAA 59.479 41.667 5.01 0.00 34.35 2.10
182 183 4.076394 GTGTGTTAGGCCACCAAATTAGA 58.924 43.478 5.01 0.00 34.35 2.10
183 184 3.823873 TGTGTGTTAGGCCACCAAATTAG 59.176 43.478 5.01 0.00 34.35 1.73
184 185 3.833732 TGTGTGTTAGGCCACCAAATTA 58.166 40.909 5.01 0.00 34.35 1.40
185 186 2.672098 TGTGTGTTAGGCCACCAAATT 58.328 42.857 5.01 0.00 34.35 1.82
186 187 2.364002 GTTGTGTGTTAGGCCACCAAAT 59.636 45.455 5.01 0.00 34.35 2.32
187 188 1.751924 GTTGTGTGTTAGGCCACCAAA 59.248 47.619 5.01 0.00 34.35 3.28
188 189 1.064314 AGTTGTGTGTTAGGCCACCAA 60.064 47.619 5.01 0.00 34.35 3.67
189 190 0.548989 AGTTGTGTGTTAGGCCACCA 59.451 50.000 5.01 0.00 34.35 4.17
190 191 1.202770 AGAGTTGTGTGTTAGGCCACC 60.203 52.381 5.01 0.00 34.35 4.61
191 192 2.256117 AGAGTTGTGTGTTAGGCCAC 57.744 50.000 5.01 0.00 35.86 5.01
192 193 4.634012 ATAAGAGTTGTGTGTTAGGCCA 57.366 40.909 5.01 0.00 0.00 5.36
193 194 6.038271 CCAATATAAGAGTTGTGTGTTAGGCC 59.962 42.308 0.00 0.00 0.00 5.19
194 195 6.038271 CCCAATATAAGAGTTGTGTGTTAGGC 59.962 42.308 0.00 0.00 0.00 3.93
195 196 6.038271 GCCCAATATAAGAGTTGTGTGTTAGG 59.962 42.308 0.00 0.00 0.00 2.69
196 197 6.038271 GGCCCAATATAAGAGTTGTGTGTTAG 59.962 42.308 0.00 0.00 0.00 2.34
197 198 5.883673 GGCCCAATATAAGAGTTGTGTGTTA 59.116 40.000 0.00 0.00 0.00 2.41
198 199 4.705023 GGCCCAATATAAGAGTTGTGTGTT 59.295 41.667 0.00 0.00 0.00 3.32
199 200 4.018415 AGGCCCAATATAAGAGTTGTGTGT 60.018 41.667 0.00 0.00 0.00 3.72
200 201 4.526970 AGGCCCAATATAAGAGTTGTGTG 58.473 43.478 0.00 0.00 0.00 3.82
201 202 4.862641 AGGCCCAATATAAGAGTTGTGT 57.137 40.909 0.00 0.00 0.00 3.72
202 203 8.784043 GTTATTAGGCCCAATATAAGAGTTGTG 58.216 37.037 4.35 0.00 0.00 3.33
203 204 8.724310 AGTTATTAGGCCCAATATAAGAGTTGT 58.276 33.333 4.35 0.00 0.00 3.32
204 205 9.220767 GAGTTATTAGGCCCAATATAAGAGTTG 57.779 37.037 4.35 0.00 0.00 3.16
205 206 8.095169 CGAGTTATTAGGCCCAATATAAGAGTT 58.905 37.037 4.35 0.00 0.00 3.01
206 207 7.612677 CGAGTTATTAGGCCCAATATAAGAGT 58.387 38.462 4.35 0.00 0.00 3.24
207 208 6.535508 GCGAGTTATTAGGCCCAATATAAGAG 59.464 42.308 4.35 0.00 0.00 2.85
208 209 6.212791 AGCGAGTTATTAGGCCCAATATAAGA 59.787 38.462 4.35 0.00 0.00 2.10
209 210 6.407202 AGCGAGTTATTAGGCCCAATATAAG 58.593 40.000 4.35 0.00 0.00 1.73
210 211 6.368779 AGCGAGTTATTAGGCCCAATATAA 57.631 37.500 4.35 0.00 0.00 0.98
211 212 5.393787 CGAGCGAGTTATTAGGCCCAATATA 60.394 44.000 4.35 0.00 0.00 0.86
212 213 4.620803 CGAGCGAGTTATTAGGCCCAATAT 60.621 45.833 4.35 0.00 0.00 1.28
213 214 3.305813 CGAGCGAGTTATTAGGCCCAATA 60.306 47.826 0.00 0.00 0.00 1.90
214 215 2.548067 CGAGCGAGTTATTAGGCCCAAT 60.548 50.000 0.00 0.00 0.00 3.16
215 216 1.202486 CGAGCGAGTTATTAGGCCCAA 60.202 52.381 0.00 0.00 0.00 4.12
216 217 0.387929 CGAGCGAGTTATTAGGCCCA 59.612 55.000 0.00 0.00 0.00 5.36
217 218 0.672342 TCGAGCGAGTTATTAGGCCC 59.328 55.000 0.00 0.00 0.00 5.80
218 219 1.336056 CCTCGAGCGAGTTATTAGGCC 60.336 57.143 17.47 0.00 40.44 5.19
219 220 1.931263 GCCTCGAGCGAGTTATTAGGC 60.931 57.143 17.47 9.70 41.06 3.93
220 221 2.053282 GCCTCGAGCGAGTTATTAGG 57.947 55.000 17.47 3.78 40.44 2.69
238 239 2.360475 GGAACAGAGGCCCACAGC 60.360 66.667 0.00 0.00 42.60 4.40
239 240 3.160585 TGGAACAGAGGCCCACAG 58.839 61.111 0.00 0.00 0.00 3.66
250 251 0.548926 TGATAGGTGGGGCTGGAACA 60.549 55.000 0.00 0.00 0.00 3.18
251 252 0.846693 ATGATAGGTGGGGCTGGAAC 59.153 55.000 0.00 0.00 0.00 3.62
252 253 1.607225 AATGATAGGTGGGGCTGGAA 58.393 50.000 0.00 0.00 0.00 3.53
253 254 1.494721 GAAATGATAGGTGGGGCTGGA 59.505 52.381 0.00 0.00 0.00 3.86
254 255 1.479389 GGAAATGATAGGTGGGGCTGG 60.479 57.143 0.00 0.00 0.00 4.85
255 256 1.479389 GGGAAATGATAGGTGGGGCTG 60.479 57.143 0.00 0.00 0.00 4.85
256 257 0.853530 GGGAAATGATAGGTGGGGCT 59.146 55.000 0.00 0.00 0.00 5.19
257 258 0.853530 AGGGAAATGATAGGTGGGGC 59.146 55.000 0.00 0.00 0.00 5.80
258 259 2.513738 TGAAGGGAAATGATAGGTGGGG 59.486 50.000 0.00 0.00 0.00 4.96
259 260 3.555966 GTGAAGGGAAATGATAGGTGGG 58.444 50.000 0.00 0.00 0.00 4.61
260 261 3.555966 GGTGAAGGGAAATGATAGGTGG 58.444 50.000 0.00 0.00 0.00 4.61
261 262 3.053693 TGGGTGAAGGGAAATGATAGGTG 60.054 47.826 0.00 0.00 0.00 4.00
262 263 3.197983 TGGGTGAAGGGAAATGATAGGT 58.802 45.455 0.00 0.00 0.00 3.08
263 264 3.951563 TGGGTGAAGGGAAATGATAGG 57.048 47.619 0.00 0.00 0.00 2.57
264 265 6.603940 TTTTTGGGTGAAGGGAAATGATAG 57.396 37.500 0.00 0.00 0.00 2.08
286 287 8.306761 GTTCCATCTGTATGTGAAGGAATTTTT 58.693 33.333 4.20 0.00 41.37 1.94
287 288 7.671398 AGTTCCATCTGTATGTGAAGGAATTTT 59.329 33.333 4.20 0.00 41.37 1.82
288 289 7.121759 CAGTTCCATCTGTATGTGAAGGAATTT 59.878 37.037 4.20 0.00 41.37 1.82
289 290 6.600822 CAGTTCCATCTGTATGTGAAGGAATT 59.399 38.462 4.20 0.00 41.37 2.17
290 291 6.070021 TCAGTTCCATCTGTATGTGAAGGAAT 60.070 38.462 4.20 0.00 41.37 3.01
291 292 5.248248 TCAGTTCCATCTGTATGTGAAGGAA 59.752 40.000 0.00 0.00 38.47 3.36
292 293 4.777366 TCAGTTCCATCTGTATGTGAAGGA 59.223 41.667 0.00 0.00 36.85 3.36
293 294 5.089970 TCAGTTCCATCTGTATGTGAAGG 57.910 43.478 0.00 0.00 36.85 3.46
294 295 6.343703 TCATCAGTTCCATCTGTATGTGAAG 58.656 40.000 0.00 0.00 36.85 3.02
301 302 8.927411 TGAGATAAATCATCAGTTCCATCTGTA 58.073 33.333 0.00 0.00 35.96 2.74
303 304 8.672823 TTGAGATAAATCATCAGTTCCATCTG 57.327 34.615 0.00 0.00 35.96 2.90
333 334 6.127338 ACGTCATCATTAGTTCCATCTTCTGA 60.127 38.462 0.00 0.00 0.00 3.27
334 335 6.019237 CACGTCATCATTAGTTCCATCTTCTG 60.019 42.308 0.00 0.00 0.00 3.02
335 336 6.045318 CACGTCATCATTAGTTCCATCTTCT 58.955 40.000 0.00 0.00 0.00 2.85
336 337 5.812642 ACACGTCATCATTAGTTCCATCTTC 59.187 40.000 0.00 0.00 0.00 2.87
416 500 8.076910 TCATCAAATGCCCTTTACATGTAAAT 57.923 30.769 26.87 12.42 34.86 1.40
432 518 5.297029 AGAGCATGACATGACTCATCAAATG 59.703 40.000 27.07 2.26 38.69 2.32
436 522 3.197116 ACAGAGCATGACATGACTCATCA 59.803 43.478 27.07 0.00 39.83 3.07
457 543 4.933330 TGATAAGATGAACTGACGCCTAC 58.067 43.478 0.00 0.00 0.00 3.18
549 640 9.764363 TGTTAAGATATGCTCGATTATTGAAGT 57.236 29.630 0.00 0.00 0.00 3.01
553 644 7.413438 GGGCTGTTAAGATATGCTCGATTATTG 60.413 40.741 0.00 0.00 0.00 1.90
610 701 3.490249 GCCGTAAACAAGAAAGGCAAAGT 60.490 43.478 0.00 0.00 43.65 2.66
691 782 8.246908 TCACCTTATTAACTTTACATGTCACG 57.753 34.615 0.00 0.00 0.00 4.35
778 869 4.724074 TGGATTCATCATCAAAGTTGCC 57.276 40.909 0.00 0.00 32.79 4.52
809 904 3.216187 TGGGTTGCACTAGCTACAAAA 57.784 42.857 4.64 0.00 46.27 2.44
810 905 2.882137 GTTGGGTTGCACTAGCTACAAA 59.118 45.455 4.64 0.00 46.27 2.83
884 982 2.030805 CCTCTTTTCCTTCTTTGCACCG 60.031 50.000 0.00 0.00 0.00 4.94
886 984 3.243535 CCACCTCTTTTCCTTCTTTGCAC 60.244 47.826 0.00 0.00 0.00 4.57
901 1000 4.954118 TGCCGGGACACCACCTCT 62.954 66.667 2.18 0.00 36.13 3.69
911 1010 2.706723 TGCCTATTTATAGTTGCCGGGA 59.293 45.455 2.18 0.00 0.00 5.14
914 1013 5.470098 ACTTCATGCCTATTTATAGTTGCCG 59.530 40.000 0.00 0.00 0.00 5.69
969 1068 4.096682 TGGTGTTAACTAGTGTTGTTTGGC 59.903 41.667 7.22 0.00 37.59 4.52
974 1073 5.529800 GTGGATTGGTGTTAACTAGTGTTGT 59.470 40.000 7.22 0.00 37.59 3.32
1123 1453 2.350899 TGCGAAAATGGTGATTGCTG 57.649 45.000 0.00 0.00 0.00 4.41
1124 1454 2.035704 TGTTGCGAAAATGGTGATTGCT 59.964 40.909 0.00 0.00 0.00 3.91
1125 1455 2.402305 TGTTGCGAAAATGGTGATTGC 58.598 42.857 0.00 0.00 0.00 3.56
1126 1456 3.801050 TGTTGTTGCGAAAATGGTGATTG 59.199 39.130 0.00 0.00 0.00 2.67
1127 1457 4.052159 TGTTGTTGCGAAAATGGTGATT 57.948 36.364 0.00 0.00 0.00 2.57
1128 1458 3.724508 TGTTGTTGCGAAAATGGTGAT 57.275 38.095 0.00 0.00 0.00 3.06
1129 1459 3.182967 GTTGTTGTTGCGAAAATGGTGA 58.817 40.909 0.00 0.00 0.00 4.02
1130 1460 2.926200 TGTTGTTGTTGCGAAAATGGTG 59.074 40.909 0.00 0.00 0.00 4.17
1131 1461 3.238108 TGTTGTTGTTGCGAAAATGGT 57.762 38.095 0.00 0.00 0.00 3.55
1132 1462 3.369147 TGTTGTTGTTGTTGCGAAAATGG 59.631 39.130 0.00 0.00 0.00 3.16
1133 1463 4.574527 TGTTGTTGTTGTTGCGAAAATG 57.425 36.364 0.00 0.00 0.00 2.32
1134 1464 4.143009 GGTTGTTGTTGTTGTTGCGAAAAT 60.143 37.500 0.00 0.00 0.00 1.82
1135 1465 3.184581 GGTTGTTGTTGTTGTTGCGAAAA 59.815 39.130 0.00 0.00 0.00 2.29
1136 1466 2.731976 GGTTGTTGTTGTTGTTGCGAAA 59.268 40.909 0.00 0.00 0.00 3.46
1137 1467 2.288213 TGGTTGTTGTTGTTGTTGCGAA 60.288 40.909 0.00 0.00 0.00 4.70
1138 1468 1.269723 TGGTTGTTGTTGTTGTTGCGA 59.730 42.857 0.00 0.00 0.00 5.10
1139 1469 1.388431 GTGGTTGTTGTTGTTGTTGCG 59.612 47.619 0.00 0.00 0.00 4.85
1140 1470 1.729517 GGTGGTTGTTGTTGTTGTTGC 59.270 47.619 0.00 0.00 0.00 4.17
1157 1487 2.676839 TGTTGTTGCTGCAAAAATGGTG 59.323 40.909 19.98 0.00 0.00 4.17
1160 1490 3.126514 TGGTTGTTGTTGCTGCAAAAATG 59.873 39.130 19.98 0.00 29.49 2.32
1161 1491 3.126686 GTGGTTGTTGTTGCTGCAAAAAT 59.873 39.130 19.98 0.00 29.49 1.82
1162 1492 2.481952 GTGGTTGTTGTTGCTGCAAAAA 59.518 40.909 17.80 15.66 0.00 1.94
1163 1493 2.072298 GTGGTTGTTGTTGCTGCAAAA 58.928 42.857 17.80 9.27 0.00 2.44
1164 1494 1.674221 GGTGGTTGTTGTTGCTGCAAA 60.674 47.619 17.80 4.95 0.00 3.68
1165 1495 0.108424 GGTGGTTGTTGTTGCTGCAA 60.108 50.000 11.69 11.69 0.00 4.08
1166 1496 1.515020 GGTGGTTGTTGTTGCTGCA 59.485 52.632 0.00 0.00 0.00 4.41
1183 1513 0.248866 GGTGGCTGTTGTGAAAACGG 60.249 55.000 0.00 0.00 0.00 4.44
1184 1514 0.453793 TGGTGGCTGTTGTGAAAACG 59.546 50.000 0.00 0.00 0.00 3.60
1185 1515 2.663826 TTGGTGGCTGTTGTGAAAAC 57.336 45.000 0.00 0.00 0.00 2.43
1195 1726 0.675083 TGCTGTGAAATTGGTGGCTG 59.325 50.000 0.00 0.00 0.00 4.85
1196 1727 0.963962 CTGCTGTGAAATTGGTGGCT 59.036 50.000 0.00 0.00 0.00 4.75
1197 1728 0.668401 GCTGCTGTGAAATTGGTGGC 60.668 55.000 0.00 0.00 0.00 5.01
1198 1729 0.675083 TGCTGCTGTGAAATTGGTGG 59.325 50.000 0.00 0.00 0.00 4.61
1199 1730 2.129607 GTTGCTGCTGTGAAATTGGTG 58.870 47.619 0.00 0.00 0.00 4.17
1200 1731 1.755959 TGTTGCTGCTGTGAAATTGGT 59.244 42.857 0.00 0.00 0.00 3.67
1201 1732 2.512485 TGTTGCTGCTGTGAAATTGG 57.488 45.000 0.00 0.00 0.00 3.16
1202 1733 2.540931 GGTTGTTGCTGCTGTGAAATTG 59.459 45.455 0.00 0.00 0.00 2.32
1203 1734 2.168106 TGGTTGTTGCTGCTGTGAAATT 59.832 40.909 0.00 0.00 0.00 1.82
1204 1735 1.755959 TGGTTGTTGCTGCTGTGAAAT 59.244 42.857 0.00 0.00 0.00 2.17
1205 1736 1.135141 GTGGTTGTTGCTGCTGTGAAA 60.135 47.619 0.00 0.00 0.00 2.69
1206 1737 0.455410 GTGGTTGTTGCTGCTGTGAA 59.545 50.000 0.00 0.00 0.00 3.18
1207 1738 1.383456 GGTGGTTGTTGCTGCTGTGA 61.383 55.000 0.00 0.00 0.00 3.58
1208 1739 1.066257 GGTGGTTGTTGCTGCTGTG 59.934 57.895 0.00 0.00 0.00 3.66
1209 1740 0.756442 ATGGTGGTTGTTGCTGCTGT 60.756 50.000 0.00 0.00 0.00 4.40
1210 1741 0.390124 AATGGTGGTTGTTGCTGCTG 59.610 50.000 0.00 0.00 0.00 4.41
1211 1742 1.122227 AAATGGTGGTTGTTGCTGCT 58.878 45.000 0.00 0.00 0.00 4.24
1212 1743 1.866601 GAAAATGGTGGTTGTTGCTGC 59.133 47.619 0.00 0.00 0.00 5.25
1213 1744 2.865551 GTGAAAATGGTGGTTGTTGCTG 59.134 45.455 0.00 0.00 0.00 4.41
1214 1745 2.499289 TGTGAAAATGGTGGTTGTTGCT 59.501 40.909 0.00 0.00 0.00 3.91
1215 1746 2.865551 CTGTGAAAATGGTGGTTGTTGC 59.134 45.455 0.00 0.00 0.00 4.17
1219 1750 2.865551 GTTGCTGTGAAAATGGTGGTTG 59.134 45.455 0.00 0.00 0.00 3.77
1221 1752 2.106566 TGTTGCTGTGAAAATGGTGGT 58.893 42.857 0.00 0.00 0.00 4.16
1229 1760 2.297315 TGTGGTTGTTGTTGCTGTGAAA 59.703 40.909 0.00 0.00 0.00 2.69
1619 2192 0.605083 TGGTTGTTGTTGTTGCTGCA 59.395 45.000 0.00 0.00 0.00 4.41
1645 2350 1.065401 CGATGGTTGTTGTTGCTGTGT 59.935 47.619 0.00 0.00 0.00 3.72
1663 2368 0.736053 GGTGGCTGTTGTGAAAACGA 59.264 50.000 0.00 0.00 0.00 3.85
1687 2392 2.668550 CTGCTGCTGCTGCTGTGA 60.669 61.111 27.67 10.41 39.81 3.58
1693 2398 1.660575 GTTGTTGCTGCTGCTGCTG 60.661 57.895 27.67 16.73 40.48 4.41
1694 2399 1.669049 TTGTTGTTGCTGCTGCTGCT 61.669 50.000 27.67 0.00 40.48 4.24
1695 2400 1.227031 TTGTTGTTGCTGCTGCTGC 60.227 52.632 22.51 22.51 40.48 5.25
1696 2401 0.179132 TGTTGTTGTTGCTGCTGCTG 60.179 50.000 17.00 0.77 40.48 4.41
1697 2402 0.531657 TTGTTGTTGTTGCTGCTGCT 59.468 45.000 17.00 0.00 40.48 4.24
1698 2403 0.646895 GTTGTTGTTGTTGCTGCTGC 59.353 50.000 8.89 8.89 40.20 5.25
1699 2404 1.993542 TGTTGTTGTTGTTGCTGCTG 58.006 45.000 0.00 0.00 0.00 4.41
1700 2405 2.288702 TGTTGTTGTTGTTGTTGCTGCT 60.289 40.909 0.00 0.00 0.00 4.24
1701 2406 2.064762 TGTTGTTGTTGTTGTTGCTGC 58.935 42.857 0.00 0.00 0.00 5.25
1702 2407 3.120718 GGTTGTTGTTGTTGTTGTTGCTG 60.121 43.478 0.00 0.00 0.00 4.41
1703 2408 3.063485 GGTTGTTGTTGTTGTTGTTGCT 58.937 40.909 0.00 0.00 0.00 3.91
1704 2409 2.802816 TGGTTGTTGTTGTTGTTGTTGC 59.197 40.909 0.00 0.00 0.00 4.17
1705 2410 5.604010 AATGGTTGTTGTTGTTGTTGTTG 57.396 34.783 0.00 0.00 0.00 3.33
1706 2411 6.706270 TGTAAATGGTTGTTGTTGTTGTTGTT 59.294 30.769 0.00 0.00 0.00 2.83
1721 2607 4.727507 TGTTGTTGCTGTGTAAATGGTT 57.272 36.364 0.00 0.00 0.00 3.67
1729 2615 0.530288 GGTGGTTGTTGTTGCTGTGT 59.470 50.000 0.00 0.00 0.00 3.72
1749 2641 4.420522 AATTGGTGGCTGTTGTGAAAAT 57.579 36.364 0.00 0.00 0.00 1.82
1779 2671 0.858583 GCGAAAATGGTGGTTGTTGC 59.141 50.000 0.00 0.00 0.00 4.17
2064 3136 1.227031 TTGTTGTTGCTGCTGCTGC 60.227 52.632 22.51 22.51 40.48 5.25
2065 3137 0.179132 TGTTGTTGTTGCTGCTGCTG 60.179 50.000 17.00 0.77 40.48 4.41
2066 3138 0.531657 TTGTTGTTGTTGCTGCTGCT 59.468 45.000 17.00 0.00 40.48 4.24
2067 3139 0.646895 GTTGTTGTTGTTGCTGCTGC 59.353 50.000 8.89 8.89 40.20 5.25
2068 3140 1.993542 TGTTGTTGTTGTTGCTGCTG 58.006 45.000 0.00 0.00 0.00 4.41
2069 3141 2.288702 TGTTGTTGTTGTTGTTGCTGCT 60.289 40.909 0.00 0.00 0.00 4.24
2070 3142 2.064762 TGTTGTTGTTGTTGTTGCTGC 58.935 42.857 0.00 0.00 0.00 5.25
2071 3143 3.492383 TGTTGTTGTTGTTGTTGTTGCTG 59.508 39.130 0.00 0.00 0.00 4.41
2072 3144 3.722147 TGTTGTTGTTGTTGTTGTTGCT 58.278 36.364 0.00 0.00 0.00 3.91
2073 3145 3.120718 CCTGTTGTTGTTGTTGTTGTTGC 60.121 43.478 0.00 0.00 0.00 4.17
2114 3186 1.412343 GTTGGGGTTGTTGTTGCTGAT 59.588 47.619 0.00 0.00 0.00 2.90
2217 3367 1.036707 GTGGCTGCAAAAAGGTACCA 58.963 50.000 15.94 0.00 0.00 3.25
2292 3442 1.000060 GGCACATTGACACTGCACATT 60.000 47.619 0.00 0.00 32.20 2.71
2354 3504 2.281539 TCAGTAGACACCAACTCCGA 57.718 50.000 0.00 0.00 0.00 4.55
2434 3584 5.472137 ACACTTTATTTGTCACCGCTACATT 59.528 36.000 0.00 0.00 0.00 2.71
2525 3675 9.382244 GCCGATATGAACATTTTCTTAATACAC 57.618 33.333 0.00 0.00 32.36 2.90
2531 3681 7.914871 CACAATGCCGATATGAACATTTTCTTA 59.085 33.333 0.00 0.00 30.54 2.10
2536 3686 5.342433 CACACAATGCCGATATGAACATTT 58.658 37.500 0.00 0.00 30.54 2.32
2683 3833 9.679661 AAAGAGTTCAACCCAAATTTTACAATT 57.320 25.926 0.00 0.00 33.72 2.32
2762 3935 9.064706 GTCACTATAGACAATGGTAGTAGCTAA 57.935 37.037 6.78 0.00 38.40 3.09
2849 4030 5.688823 TCGACAAATAAGTTGACATGCAAG 58.311 37.500 0.00 0.00 39.87 4.01
2885 4072 7.117667 GTGGTGTTTGTGAAGTTCAAGAAAAAT 59.882 33.333 7.25 0.00 0.00 1.82
3180 6004 3.314693 TGTATCCCCTGGTGAACCTATC 58.685 50.000 0.37 0.00 36.82 2.08
3264 6279 2.289010 GCCCAAACCATGTTTCTCTTGG 60.289 50.000 0.00 0.00 44.08 3.61
3265 6280 2.607771 CGCCCAAACCATGTTTCTCTTG 60.608 50.000 0.00 0.00 0.00 3.02
3266 6281 1.613437 CGCCCAAACCATGTTTCTCTT 59.387 47.619 0.00 0.00 0.00 2.85
3267 6282 1.247567 CGCCCAAACCATGTTTCTCT 58.752 50.000 0.00 0.00 0.00 3.10
3268 6283 0.243636 CCGCCCAAACCATGTTTCTC 59.756 55.000 0.00 0.00 0.00 2.87
3269 6284 1.815817 GCCGCCCAAACCATGTTTCT 61.816 55.000 0.00 0.00 0.00 2.52
3270 6285 1.374125 GCCGCCCAAACCATGTTTC 60.374 57.895 0.00 0.00 0.00 2.78
3271 6286 1.815817 GAGCCGCCCAAACCATGTTT 61.816 55.000 0.00 0.00 0.00 2.83
3272 6287 2.203625 AGCCGCCCAAACCATGTT 60.204 55.556 0.00 0.00 0.00 2.71
3273 6288 2.676471 GAGCCGCCCAAACCATGT 60.676 61.111 0.00 0.00 0.00 3.21
3274 6289 0.751277 TATGAGCCGCCCAAACCATG 60.751 55.000 0.00 0.00 0.00 3.66
3275 6290 0.033601 TTATGAGCCGCCCAAACCAT 60.034 50.000 0.00 0.00 0.00 3.55
3276 6291 0.033601 ATTATGAGCCGCCCAAACCA 60.034 50.000 0.00 0.00 0.00 3.67
3277 6292 1.067060 GAATTATGAGCCGCCCAAACC 59.933 52.381 0.00 0.00 0.00 3.27
3278 6293 2.024414 AGAATTATGAGCCGCCCAAAC 58.976 47.619 0.00 0.00 0.00 2.93
3279 6294 2.435372 AGAATTATGAGCCGCCCAAA 57.565 45.000 0.00 0.00 0.00 3.28
3280 6295 3.788227 ATAGAATTATGAGCCGCCCAA 57.212 42.857 0.00 0.00 0.00 4.12
3281 6296 4.530553 TCTTATAGAATTATGAGCCGCCCA 59.469 41.667 0.00 0.00 0.00 5.36
3282 6297 5.086104 TCTTATAGAATTATGAGCCGCCC 57.914 43.478 0.00 0.00 0.00 6.13
3283 6298 5.725362 ACTCTTATAGAATTATGAGCCGCC 58.275 41.667 0.00 0.00 30.38 6.13
3299 6314 9.696572 TGACTAGACAACCTGTTATACTCTTAT 57.303 33.333 0.00 0.00 0.00 1.73
3300 6315 9.696572 ATGACTAGACAACCTGTTATACTCTTA 57.303 33.333 0.00 0.00 0.00 2.10
3301 6316 8.596781 ATGACTAGACAACCTGTTATACTCTT 57.403 34.615 0.00 0.00 0.00 2.85
3302 6317 8.596781 AATGACTAGACAACCTGTTATACTCT 57.403 34.615 0.00 0.00 0.00 3.24
3309 6324 9.574516 AATTTCTAAATGACTAGACAACCTGTT 57.425 29.630 0.00 0.00 0.00 3.16


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.