Multiple sequence alignment - TraesCS1A01G007900
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G007900 | chr1A | 100.000 | 2210 | 0 | 0 | 1 | 2210 | 4062197 | 4064406 | 0.000000e+00 | 4082.0 |
1 | TraesCS1A01G007900 | chr1D | 86.171 | 1750 | 110 | 48 | 1 | 1672 | 112992 | 111297 | 0.000000e+00 | 1770.0 |
2 | TraesCS1A01G007900 | chr1D | 94.819 | 193 | 6 | 1 | 2022 | 2210 | 111138 | 110946 | 4.610000e-77 | 298.0 |
3 | TraesCS1A01G007900 | chr1D | 80.451 | 133 | 22 | 4 | 56 | 187 | 189706202 | 189706073 | 5.020000e-17 | 99.0 |
4 | TraesCS1A01G007900 | chr1D | 97.500 | 40 | 0 | 1 | 1744 | 1782 | 463974377 | 463974338 | 1.420000e-07 | 67.6 |
5 | TraesCS1A01G007900 | chr1B | 85.049 | 1438 | 116 | 49 | 180 | 1558 | 5509096 | 5510493 | 0.000000e+00 | 1373.0 |
6 | TraesCS1A01G007900 | chr1B | 93.421 | 228 | 15 | 0 | 1983 | 2210 | 5511280 | 5511507 | 2.720000e-89 | 339.0 |
7 | TraesCS1A01G007900 | chr1B | 79.298 | 570 | 50 | 20 | 618 | 1150 | 5505751 | 5506289 | 9.780000e-89 | 337.0 |
8 | TraesCS1A01G007900 | chr6D | 78.947 | 342 | 56 | 13 | 14 | 347 | 139382099 | 139381766 | 3.690000e-53 | 219.0 |
9 | TraesCS1A01G007900 | chr6A | 76.812 | 345 | 68 | 10 | 14 | 354 | 182316716 | 182316380 | 1.350000e-42 | 183.0 |
10 | TraesCS1A01G007900 | chr3D | 82.993 | 147 | 22 | 3 | 43 | 188 | 481210723 | 481210579 | 1.780000e-26 | 130.0 |
11 | TraesCS1A01G007900 | chr3D | 93.478 | 46 | 2 | 1 | 1738 | 1782 | 571897474 | 571897519 | 1.420000e-07 | 67.6 |
12 | TraesCS1A01G007900 | chr7D | 74.658 | 292 | 63 | 11 | 62 | 346 | 563539026 | 563539313 | 3.850000e-23 | 119.0 |
13 | TraesCS1A01G007900 | chr7D | 76.757 | 185 | 36 | 4 | 14 | 193 | 422128144 | 422127962 | 1.810000e-16 | 97.1 |
14 | TraesCS1A01G007900 | chr5D | 72.629 | 369 | 86 | 14 | 56 | 415 | 404479636 | 404479274 | 8.340000e-20 | 108.0 |
15 | TraesCS1A01G007900 | chr5D | 97.059 | 34 | 1 | 0 | 1747 | 1780 | 398488809 | 398488842 | 8.520000e-05 | 58.4 |
16 | TraesCS1A01G007900 | chr3B | 85.075 | 67 | 6 | 2 | 83 | 147 | 143584430 | 143584494 | 5.090000e-07 | 65.8 |
17 | TraesCS1A01G007900 | chr2A | 90.196 | 51 | 3 | 2 | 1740 | 1790 | 2340206 | 2340254 | 5.090000e-07 | 65.8 |
18 | TraesCS1A01G007900 | chr2D | 92.857 | 42 | 2 | 1 | 1745 | 1786 | 629387916 | 629387876 | 2.370000e-05 | 60.2 |
19 | TraesCS1A01G007900 | chr2D | 96.875 | 32 | 1 | 0 | 1751 | 1782 | 495841223 | 495841192 | 1.000000e-03 | 54.7 |
20 | TraesCS1A01G007900 | chr7A | 90.909 | 44 | 3 | 1 | 1741 | 1784 | 267434263 | 267434305 | 8.520000e-05 | 58.4 |
21 | TraesCS1A01G007900 | chr3A | 100.000 | 29 | 0 | 0 | 1215 | 1243 | 646312065 | 646312037 | 1.000000e-03 | 54.7 |
22 | TraesCS1A01G007900 | chr5A | 100.000 | 28 | 0 | 0 | 1756 | 1783 | 384427214 | 384427241 | 4.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G007900 | chr1A | 4062197 | 4064406 | 2209 | False | 4082 | 4082 | 100.000000 | 1 | 2210 | 1 | chr1A.!!$F1 | 2209 |
1 | TraesCS1A01G007900 | chr1D | 110946 | 112992 | 2046 | True | 1034 | 1770 | 90.495000 | 1 | 2210 | 2 | chr1D.!!$R3 | 2209 |
2 | TraesCS1A01G007900 | chr1B | 5505751 | 5511507 | 5756 | False | 683 | 1373 | 85.922667 | 180 | 2210 | 3 | chr1B.!!$F1 | 2030 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
924 | 4147 | 0.178981 | TTGCCTTGCTTTCTCTGCCT | 60.179 | 50.0 | 0.0 | 0.0 | 0.0 | 4.75 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1918 | 5659 | 0.026285 | GCATGTACGGTTCATCACGC | 59.974 | 55.0 | 0.0 | 0.0 | 0.0 | 5.34 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
108 | 109 | 2.367512 | ATCCACCTCCCCTCTGCC | 60.368 | 66.667 | 0.00 | 0.00 | 0.00 | 4.85 |
150 | 151 | 2.041819 | GGAGGGGGATCTCGGTGT | 60.042 | 66.667 | 0.00 | 0.00 | 34.74 | 4.16 |
159 | 160 | 1.064357 | GGATCTCGGTGTCTCGACTTC | 59.936 | 57.143 | 0.00 | 0.00 | 35.18 | 3.01 |
162 | 163 | 2.504244 | CGGTGTCTCGACTTCGGC | 60.504 | 66.667 | 0.00 | 0.00 | 40.29 | 5.54 |
245 | 3413 | 3.762407 | TCATTTCGAGTTGGTCTTCCA | 57.238 | 42.857 | 0.00 | 0.00 | 42.66 | 3.53 |
251 | 3419 | 2.698797 | TCGAGTTGGTCTTCCAGACTTT | 59.301 | 45.455 | 3.97 | 0.00 | 44.46 | 2.66 |
262 | 3430 | 6.169094 | GTCTTCCAGACTTTGATTCTCATCA | 58.831 | 40.000 | 0.00 | 0.00 | 41.88 | 3.07 |
275 | 3443 | 7.748691 | TGATTCTCATCAAGTTTGTTCATCA | 57.251 | 32.000 | 0.00 | 0.00 | 36.41 | 3.07 |
285 | 3453 | 6.494491 | TCAAGTTTGTTCATCAGGATGGATTT | 59.506 | 34.615 | 9.25 | 0.00 | 39.24 | 2.17 |
325 | 3493 | 2.408271 | TCATGATGTCTCCTTGGTGC | 57.592 | 50.000 | 0.00 | 0.00 | 0.00 | 5.01 |
337 | 3505 | 1.656652 | CTTGGTGCGATGAGGTTAGG | 58.343 | 55.000 | 0.00 | 0.00 | 0.00 | 2.69 |
345 | 3513 | 2.093658 | GCGATGAGGTTAGGGTTTCTCA | 60.094 | 50.000 | 0.00 | 0.00 | 40.04 | 3.27 |
363 | 3531 | 1.666189 | TCATTGTTTGTGTGCGACGAA | 59.334 | 42.857 | 0.00 | 0.00 | 0.00 | 3.85 |
369 | 3549 | 4.487019 | TGTTTGTGTGCGACGAATAGATA | 58.513 | 39.130 | 0.00 | 0.00 | 30.24 | 1.98 |
405 | 3585 | 2.301346 | AGGGTTCAATGGCGATGATTC | 58.699 | 47.619 | 0.00 | 0.00 | 0.00 | 2.52 |
424 | 3604 | 0.747255 | CCAGCTCTAGTACGCCACAT | 59.253 | 55.000 | 0.00 | 0.00 | 0.00 | 3.21 |
441 | 3621 | 1.078426 | ATCTTAGGGGCACGTGCAC | 60.078 | 57.895 | 38.60 | 36.67 | 45.53 | 4.57 |
450 | 3630 | 0.457681 | GGCACGTGCACAAACACTTT | 60.458 | 50.000 | 38.60 | 0.00 | 44.36 | 2.66 |
453 | 3633 | 1.135546 | CACGTGCACAAACACTTTCCA | 60.136 | 47.619 | 18.64 | 0.00 | 38.45 | 3.53 |
463 | 3643 | 4.949856 | ACAAACACTTTCCAACTGTCATCT | 59.050 | 37.500 | 0.00 | 0.00 | 0.00 | 2.90 |
469 | 3649 | 4.989168 | ACTTTCCAACTGTCATCTACGAAC | 59.011 | 41.667 | 0.00 | 0.00 | 0.00 | 3.95 |
481 | 3661 | 1.342174 | TCTACGAACTCAAACCGGCTT | 59.658 | 47.619 | 0.00 | 0.00 | 0.00 | 4.35 |
499 | 3681 | 1.136500 | CTTAGGTAGGGGAGCGTCAAC | 59.864 | 57.143 | 0.00 | 0.00 | 0.00 | 3.18 |
543 | 3745 | 3.754323 | TCGGTGGTGCTCGATTTAATTTT | 59.246 | 39.130 | 0.00 | 0.00 | 0.00 | 1.82 |
574 | 3776 | 6.490040 | TGTATATAGGATGCTTTGCCCTTTTC | 59.510 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
665 | 3868 | 5.864418 | AATATTTTCATGCATGGAGCTGT | 57.136 | 34.783 | 25.97 | 10.42 | 45.94 | 4.40 |
667 | 3870 | 3.306917 | TTTTCATGCATGGAGCTGTTG | 57.693 | 42.857 | 25.97 | 0.00 | 45.94 | 3.33 |
680 | 3883 | 7.173907 | GCATGGAGCTGTTGACAGTATATAATT | 59.826 | 37.037 | 12.32 | 0.00 | 45.45 | 1.40 |
744 | 3952 | 6.307155 | CAAAAGGCGTGACTAGAAAATACAG | 58.693 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
746 | 3954 | 2.608090 | GGCGTGACTAGAAAATACAGGC | 59.392 | 50.000 | 0.00 | 0.00 | 40.17 | 4.85 |
768 | 3976 | 4.556699 | GCGCAAAAGGTGTGACTAGAAAAT | 60.557 | 41.667 | 0.30 | 0.00 | 40.42 | 1.82 |
770 | 3978 | 5.277779 | CGCAAAAGGTGTGACTAGAAAATGA | 60.278 | 40.000 | 0.00 | 0.00 | 40.42 | 2.57 |
817 | 4025 | 1.442184 | CGAGACGTCACCAACCGAG | 60.442 | 63.158 | 19.50 | 0.00 | 0.00 | 4.63 |
878 | 4086 | 2.362736 | CACAATCACACCATCCTCCTG | 58.637 | 52.381 | 0.00 | 0.00 | 0.00 | 3.86 |
880 | 4088 | 0.257039 | AATCACACCATCCTCCTGCC | 59.743 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
890 | 4113 | 4.486503 | CTCCTGCCCTGCTCCTGC | 62.487 | 72.222 | 0.00 | 0.00 | 40.20 | 4.85 |
912 | 4135 | 0.963856 | TGCTCTGCTCCATTGCCTTG | 60.964 | 55.000 | 0.00 | 0.00 | 0.00 | 3.61 |
924 | 4147 | 0.178981 | TTGCCTTGCTTTCTCTGCCT | 60.179 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
925 | 4148 | 0.892358 | TGCCTTGCTTTCTCTGCCTG | 60.892 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
926 | 4149 | 1.881602 | CCTTGCTTTCTCTGCCTGC | 59.118 | 57.895 | 0.00 | 0.00 | 0.00 | 4.85 |
927 | 4150 | 1.593296 | CCTTGCTTTCTCTGCCTGCC | 61.593 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
928 | 4151 | 0.608582 | CTTGCTTTCTCTGCCTGCCT | 60.609 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
945 | 4172 | 1.816183 | GCCTCGAGGAGCTAGCTAGAA | 60.816 | 57.143 | 35.69 | 0.87 | 37.39 | 2.10 |
948 | 4175 | 5.155332 | CCTCGAGGAGCTAGCTAGAAAGC | 62.155 | 56.522 | 28.21 | 11.74 | 43.12 | 3.51 |
960 | 4187 | 4.329296 | GCTAGAAAGCGAGAAAGAAACC | 57.671 | 45.455 | 0.00 | 0.00 | 39.39 | 3.27 |
1015 | 4242 | 2.687566 | GGATGTCGGACTGGGGGT | 60.688 | 66.667 | 9.88 | 0.00 | 0.00 | 4.95 |
1180 | 4407 | 0.867329 | CATCGCGCTCTTCGTCATCA | 60.867 | 55.000 | 5.56 | 0.00 | 41.07 | 3.07 |
1211 | 4438 | 2.029020 | TGCACATCACCACTGACTAGAC | 60.029 | 50.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1265 | 4492 | 3.883669 | CTCCAATTAAGCTGCTCTTCCT | 58.116 | 45.455 | 1.00 | 0.00 | 36.25 | 3.36 |
1318 | 4559 | 5.343249 | CCTCTCTGTTTTGTTTTGTTCTGG | 58.657 | 41.667 | 0.00 | 0.00 | 0.00 | 3.86 |
1348 | 4589 | 4.988540 | TGCTTGCAAGTACTTGTAGTAGTG | 59.011 | 41.667 | 30.90 | 17.74 | 42.31 | 2.74 |
1349 | 4590 | 4.989168 | GCTTGCAAGTACTTGTAGTAGTGT | 59.011 | 41.667 | 30.90 | 0.00 | 42.31 | 3.55 |
1363 | 4604 | 8.926715 | TTGTAGTAGTGTATGTGATCATGTTC | 57.073 | 34.615 | 0.00 | 0.00 | 35.70 | 3.18 |
1372 | 4613 | 4.891627 | TGTGATCATGTTCGTTTGTTGT | 57.108 | 36.364 | 0.00 | 0.00 | 0.00 | 3.32 |
1374 | 4615 | 4.219033 | GTGATCATGTTCGTTTGTTGTCC | 58.781 | 43.478 | 0.00 | 0.00 | 0.00 | 4.02 |
1376 | 4617 | 4.578516 | TGATCATGTTCGTTTGTTGTCCTT | 59.421 | 37.500 | 0.00 | 0.00 | 0.00 | 3.36 |
1377 | 4618 | 4.285807 | TCATGTTCGTTTGTTGTCCTTG | 57.714 | 40.909 | 0.00 | 0.00 | 0.00 | 3.61 |
1386 | 4627 | 7.330900 | TCGTTTGTTGTCCTTGGTAATTAAA | 57.669 | 32.000 | 0.00 | 0.00 | 0.00 | 1.52 |
1404 | 4645 | 0.866061 | AACTCGCGCGTATGTAGCTG | 60.866 | 55.000 | 30.98 | 11.45 | 0.00 | 4.24 |
1406 | 4647 | 3.692367 | CGCGCGTATGTAGCTGCC | 61.692 | 66.667 | 24.19 | 0.00 | 33.18 | 4.85 |
1408 | 4649 | 1.883084 | GCGCGTATGTAGCTGCCTT | 60.883 | 57.895 | 8.43 | 0.00 | 0.00 | 4.35 |
1443 | 4686 | 7.557719 | AGAGATGTGTACTTAATTTTCCATGGG | 59.442 | 37.037 | 13.02 | 0.00 | 0.00 | 4.00 |
1453 | 4696 | 0.187117 | TTTCCATGGGAGTGGCACAA | 59.813 | 50.000 | 21.41 | 2.44 | 44.16 | 3.33 |
1469 | 4713 | 6.861055 | AGTGGCACAAACAAGTTATTTAATCG | 59.139 | 34.615 | 21.41 | 0.00 | 44.16 | 3.34 |
1489 | 4733 | 6.952773 | ATCGTCTGAAGCTCTAGATTAACT | 57.047 | 37.500 | 0.00 | 0.00 | 0.00 | 2.24 |
1500 | 4744 | 6.836527 | AGCTCTAGATTAACTGGTAGATGTGT | 59.163 | 38.462 | 0.00 | 0.00 | 0.00 | 3.72 |
1501 | 4745 | 7.999545 | AGCTCTAGATTAACTGGTAGATGTGTA | 59.000 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1540 | 4790 | 3.878699 | CCCATTTTTCTTGCAAAGCAACT | 59.121 | 39.130 | 0.00 | 0.00 | 45.70 | 3.16 |
1558 | 4808 | 4.998033 | GCAACTACCTTCTTTTCAGCTACT | 59.002 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1559 | 4809 | 5.120986 | GCAACTACCTTCTTTTCAGCTACTC | 59.879 | 44.000 | 0.00 | 0.00 | 0.00 | 2.59 |
1561 | 4811 | 5.088026 | ACTACCTTCTTTTCAGCTACTCCT | 58.912 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1562 | 4812 | 6.254522 | ACTACCTTCTTTTCAGCTACTCCTA | 58.745 | 40.000 | 0.00 | 0.00 | 0.00 | 2.94 |
1563 | 4813 | 5.408880 | ACCTTCTTTTCAGCTACTCCTAC | 57.591 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
1564 | 4814 | 4.838986 | ACCTTCTTTTCAGCTACTCCTACA | 59.161 | 41.667 | 0.00 | 0.00 | 0.00 | 2.74 |
1565 | 4815 | 5.307196 | ACCTTCTTTTCAGCTACTCCTACAA | 59.693 | 40.000 | 0.00 | 0.00 | 0.00 | 2.41 |
1566 | 4816 | 5.639931 | CCTTCTTTTCAGCTACTCCTACAAC | 59.360 | 44.000 | 0.00 | 0.00 | 0.00 | 3.32 |
1567 | 4817 | 4.806330 | TCTTTTCAGCTACTCCTACAACG | 58.194 | 43.478 | 0.00 | 0.00 | 0.00 | 4.10 |
1568 | 4818 | 2.649331 | TTCAGCTACTCCTACAACGC | 57.351 | 50.000 | 0.00 | 0.00 | 0.00 | 4.84 |
1569 | 4819 | 0.450583 | TCAGCTACTCCTACAACGCG | 59.549 | 55.000 | 3.53 | 3.53 | 0.00 | 6.01 |
1570 | 4820 | 1.139095 | AGCTACTCCTACAACGCGC | 59.861 | 57.895 | 5.73 | 0.00 | 0.00 | 6.86 |
1571 | 4821 | 1.153901 | GCTACTCCTACAACGCGCA | 60.154 | 57.895 | 5.73 | 0.00 | 0.00 | 6.09 |
1572 | 4822 | 0.527817 | GCTACTCCTACAACGCGCAT | 60.528 | 55.000 | 5.73 | 0.00 | 0.00 | 4.73 |
1573 | 4823 | 1.200483 | CTACTCCTACAACGCGCATG | 58.800 | 55.000 | 5.73 | 8.75 | 0.00 | 4.06 |
1574 | 4824 | 0.812549 | TACTCCTACAACGCGCATGA | 59.187 | 50.000 | 18.09 | 0.86 | 0.00 | 3.07 |
1575 | 4825 | 0.037697 | ACTCCTACAACGCGCATGAA | 60.038 | 50.000 | 18.09 | 0.00 | 0.00 | 2.57 |
1576 | 4826 | 1.075542 | CTCCTACAACGCGCATGAAA | 58.924 | 50.000 | 18.09 | 5.97 | 0.00 | 2.69 |
1584 | 4834 | 1.696988 | ACGCGCATGAAATTTCAACC | 58.303 | 45.000 | 23.91 | 15.98 | 41.13 | 3.77 |
1591 | 4841 | 3.617288 | GCATGAAATTTCAACCACCCCTC | 60.617 | 47.826 | 23.91 | 3.37 | 41.13 | 4.30 |
1594 | 4844 | 2.309136 | AATTTCAACCACCCCTCCAG | 57.691 | 50.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1596 | 4846 | 1.650242 | TTTCAACCACCCCTCCAGCA | 61.650 | 55.000 | 0.00 | 0.00 | 0.00 | 4.41 |
1597 | 4847 | 1.434513 | TTCAACCACCCCTCCAGCAT | 61.435 | 55.000 | 0.00 | 0.00 | 0.00 | 3.79 |
1604 | 4854 | 1.228510 | CCCCTCCAGCATTCCCTTC | 59.771 | 63.158 | 0.00 | 0.00 | 0.00 | 3.46 |
1614 | 4864 | 4.070716 | CAGCATTCCCTTCTGATATCCAC | 58.929 | 47.826 | 0.00 | 0.00 | 0.00 | 4.02 |
1660 | 4913 | 0.251698 | TGCCCATGTGCATTCTTGGA | 60.252 | 50.000 | 0.00 | 0.00 | 36.04 | 3.53 |
1668 | 4921 | 4.707030 | TGTGCATTCTTGGATTCATGAC | 57.293 | 40.909 | 0.00 | 0.00 | 0.00 | 3.06 |
1672 | 4925 | 5.819379 | GTGCATTCTTGGATTCATGACTCTA | 59.181 | 40.000 | 12.29 | 4.11 | 0.00 | 2.43 |
1673 | 4926 | 6.317140 | GTGCATTCTTGGATTCATGACTCTAA | 59.683 | 38.462 | 12.29 | 11.46 | 0.00 | 2.10 |
1676 | 4929 | 6.932356 | TTCTTGGATTCATGACTCTAATGC | 57.068 | 37.500 | 11.42 | 1.21 | 0.00 | 3.56 |
1677 | 4930 | 5.993055 | TCTTGGATTCATGACTCTAATGCA | 58.007 | 37.500 | 11.42 | 3.73 | 0.00 | 3.96 |
1678 | 4931 | 6.053650 | TCTTGGATTCATGACTCTAATGCAG | 58.946 | 40.000 | 11.42 | 1.93 | 33.38 | 4.41 |
1680 | 4933 | 4.141551 | TGGATTCATGACTCTAATGCAGCT | 60.142 | 41.667 | 12.29 | 0.00 | 0.00 | 4.24 |
1682 | 4935 | 5.407995 | GGATTCATGACTCTAATGCAGCTAC | 59.592 | 44.000 | 12.29 | 0.00 | 0.00 | 3.58 |
1683 | 4936 | 5.604758 | TTCATGACTCTAATGCAGCTACT | 57.395 | 39.130 | 0.00 | 0.00 | 0.00 | 2.57 |
1685 | 4938 | 6.324561 | TCATGACTCTAATGCAGCTACTAG | 57.675 | 41.667 | 0.00 | 0.00 | 0.00 | 2.57 |
1688 | 4941 | 5.895928 | TGACTCTAATGCAGCTACTAGTTG | 58.104 | 41.667 | 0.00 | 0.00 | 0.00 | 3.16 |
1691 | 5041 | 5.600484 | ACTCTAATGCAGCTACTAGTTGGAT | 59.400 | 40.000 | 0.00 | 0.00 | 38.98 | 3.41 |
1696 | 5046 | 7.559590 | AATGCAGCTACTAGTTGGATTTTAG | 57.440 | 36.000 | 12.12 | 0.00 | 42.77 | 1.85 |
1705 | 5055 | 9.444600 | CTACTAGTTGGATTTTAGCCAAGTAAA | 57.555 | 33.333 | 0.00 | 4.00 | 45.67 | 2.01 |
1716 | 5066 | 9.981114 | ATTTTAGCCAAGTAAATATGCAATACC | 57.019 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
1718 | 5068 | 5.454062 | AGCCAAGTAAATATGCAATACCCA | 58.546 | 37.500 | 0.00 | 0.00 | 0.00 | 4.51 |
1733 | 5474 | 9.816354 | ATGCAATACCCAATCAATTAAAACTAC | 57.184 | 29.630 | 0.00 | 0.00 | 0.00 | 2.73 |
1734 | 5475 | 9.030452 | TGCAATACCCAATCAATTAAAACTACT | 57.970 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
1737 | 5478 | 8.762481 | ATACCCAATCAATTAAAACTACTCCC | 57.238 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
1740 | 5481 | 6.663523 | CCCAATCAATTAAAACTACTCCCTGT | 59.336 | 38.462 | 0.00 | 0.00 | 0.00 | 4.00 |
1741 | 5482 | 7.832187 | CCCAATCAATTAAAACTACTCCCTGTA | 59.168 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
1742 | 5483 | 9.238368 | CCAATCAATTAAAACTACTCCCTGTAA | 57.762 | 33.333 | 0.00 | 0.00 | 0.00 | 2.41 |
1754 | 5495 | 8.375493 | ACTACTCCCTGTAATGATCTAAAACA | 57.625 | 34.615 | 0.00 | 0.00 | 0.00 | 2.83 |
1756 | 5497 | 9.838339 | CTACTCCCTGTAATGATCTAAAACAAT | 57.162 | 33.333 | 0.00 | 0.00 | 0.00 | 2.71 |
1759 | 5500 | 9.401058 | CTCCCTGTAATGATCTAAAACAATCTT | 57.599 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
1787 | 5528 | 6.687081 | TTCTTTACAGAGAGAGTAGCTAGC | 57.313 | 41.667 | 6.62 | 6.62 | 0.00 | 3.42 |
1788 | 5529 | 5.996644 | TCTTTACAGAGAGAGTAGCTAGCT | 58.003 | 41.667 | 23.12 | 23.12 | 0.00 | 3.32 |
1789 | 5530 | 7.127012 | TCTTTACAGAGAGAGTAGCTAGCTA | 57.873 | 40.000 | 20.67 | 20.67 | 0.00 | 3.32 |
1790 | 5531 | 7.741785 | TCTTTACAGAGAGAGTAGCTAGCTAT | 58.258 | 38.462 | 26.59 | 15.56 | 0.00 | 2.97 |
1791 | 5532 | 7.659799 | TCTTTACAGAGAGAGTAGCTAGCTATG | 59.340 | 40.741 | 26.59 | 19.89 | 0.00 | 2.23 |
1792 | 5533 | 5.304686 | ACAGAGAGAGTAGCTAGCTATGT | 57.695 | 43.478 | 26.59 | 20.50 | 0.00 | 2.29 |
1793 | 5534 | 6.428083 | ACAGAGAGAGTAGCTAGCTATGTA | 57.572 | 41.667 | 26.59 | 4.06 | 0.00 | 2.29 |
1794 | 5535 | 7.016153 | ACAGAGAGAGTAGCTAGCTATGTAT | 57.984 | 40.000 | 26.59 | 14.74 | 0.00 | 2.29 |
1795 | 5536 | 8.141298 | ACAGAGAGAGTAGCTAGCTATGTATA | 57.859 | 38.462 | 26.59 | 2.81 | 0.00 | 1.47 |
1800 | 5541 | 9.802039 | AGAGAGTAGCTAGCTATGTATACTTTT | 57.198 | 33.333 | 26.59 | 12.75 | 0.00 | 2.27 |
1803 | 5544 | 9.834628 | GAGTAGCTAGCTATGTATACTTTTCAG | 57.165 | 37.037 | 26.59 | 0.00 | 0.00 | 3.02 |
1808 | 5549 | 7.386299 | GCTAGCTATGTATACTTTTCAGCACAT | 59.614 | 37.037 | 7.70 | 0.00 | 0.00 | 3.21 |
1827 | 5568 | 9.983804 | CAGCACATATAATACATGCTTGATTAG | 57.016 | 33.333 | 6.60 | 0.00 | 44.01 | 1.73 |
1846 | 5587 | 2.951269 | TCGAACTGCCGACCTAGAA | 58.049 | 52.632 | 0.00 | 0.00 | 33.14 | 2.10 |
1847 | 5588 | 0.809385 | TCGAACTGCCGACCTAGAAG | 59.191 | 55.000 | 0.00 | 0.00 | 33.14 | 2.85 |
1848 | 5589 | 0.802607 | CGAACTGCCGACCTAGAAGC | 60.803 | 60.000 | 0.00 | 0.00 | 0.00 | 3.86 |
1849 | 5590 | 0.246635 | GAACTGCCGACCTAGAAGCA | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.91 |
1850 | 5591 | 0.037232 | AACTGCCGACCTAGAAGCAC | 60.037 | 55.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1851 | 5592 | 1.517257 | CTGCCGACCTAGAAGCACG | 60.517 | 63.158 | 0.00 | 0.00 | 0.00 | 5.34 |
1852 | 5593 | 2.886124 | GCCGACCTAGAAGCACGC | 60.886 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1853 | 5594 | 2.579787 | CCGACCTAGAAGCACGCG | 60.580 | 66.667 | 3.53 | 3.53 | 0.00 | 6.01 |
1854 | 5595 | 3.248171 | CGACCTAGAAGCACGCGC | 61.248 | 66.667 | 5.73 | 0.00 | 38.99 | 6.86 |
1855 | 5596 | 2.126071 | GACCTAGAAGCACGCGCA | 60.126 | 61.111 | 5.73 | 0.00 | 42.27 | 6.09 |
1858 | 5599 | 4.196826 | CTAGAAGCACGCGCACGC | 62.197 | 66.667 | 5.73 | 9.41 | 45.53 | 5.34 |
1865 | 5606 | 3.327754 | CACGCGCACGCCCTATAC | 61.328 | 66.667 | 5.73 | 0.00 | 45.53 | 1.47 |
1866 | 5607 | 3.829044 | ACGCGCACGCCCTATACA | 61.829 | 61.111 | 5.73 | 0.00 | 45.53 | 2.29 |
1869 | 5610 | 2.279918 | CGCACGCCCTATACACCC | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 4.61 |
1870 | 5611 | 2.279918 | GCACGCCCTATACACCCG | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 5.28 |
1872 | 5613 | 1.362717 | CACGCCCTATACACCCGAG | 59.637 | 63.158 | 0.00 | 0.00 | 0.00 | 4.63 |
1874 | 5615 | 1.105759 | ACGCCCTATACACCCGAGAC | 61.106 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1875 | 5616 | 1.803366 | CGCCCTATACACCCGAGACC | 61.803 | 65.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1876 | 5617 | 0.757935 | GCCCTATACACCCGAGACCA | 60.758 | 60.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1877 | 5618 | 1.329256 | CCCTATACACCCGAGACCAG | 58.671 | 60.000 | 0.00 | 0.00 | 0.00 | 4.00 |
1878 | 5619 | 1.133575 | CCCTATACACCCGAGACCAGA | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.86 |
1879 | 5620 | 2.231529 | CCTATACACCCGAGACCAGAG | 58.768 | 57.143 | 0.00 | 0.00 | 0.00 | 3.35 |
1880 | 5621 | 2.231529 | CTATACACCCGAGACCAGAGG | 58.768 | 57.143 | 0.00 | 0.00 | 0.00 | 3.69 |
1886 | 5627 | 2.796500 | CCGAGACCAGAGGGAGTAC | 58.204 | 63.158 | 0.00 | 0.00 | 38.05 | 2.73 |
1887 | 5628 | 1.096386 | CCGAGACCAGAGGGAGTACG | 61.096 | 65.000 | 0.00 | 0.00 | 38.05 | 3.67 |
1888 | 5629 | 0.392729 | CGAGACCAGAGGGAGTACGT | 60.393 | 60.000 | 0.00 | 0.00 | 38.05 | 3.57 |
1889 | 5630 | 1.096416 | GAGACCAGAGGGAGTACGTG | 58.904 | 60.000 | 0.00 | 0.00 | 38.05 | 4.49 |
1890 | 5631 | 0.404812 | AGACCAGAGGGAGTACGTGT | 59.595 | 55.000 | 0.00 | 0.00 | 38.05 | 4.49 |
1891 | 5632 | 1.632409 | AGACCAGAGGGAGTACGTGTA | 59.368 | 52.381 | 0.00 | 0.00 | 38.05 | 2.90 |
1892 | 5633 | 1.742268 | GACCAGAGGGAGTACGTGTAC | 59.258 | 57.143 | 0.00 | 1.90 | 38.05 | 2.90 |
1893 | 5634 | 1.074405 | ACCAGAGGGAGTACGTGTACA | 59.926 | 52.381 | 12.32 | 0.00 | 36.71 | 2.90 |
1894 | 5635 | 2.165167 | CCAGAGGGAGTACGTGTACAA | 58.835 | 52.381 | 12.32 | 0.00 | 38.48 | 2.41 |
1895 | 5636 | 2.094854 | CCAGAGGGAGTACGTGTACAAC | 60.095 | 54.545 | 12.32 | 6.02 | 38.48 | 3.32 |
1896 | 5637 | 2.555325 | CAGAGGGAGTACGTGTACAACA | 59.445 | 50.000 | 12.32 | 0.00 | 38.48 | 3.33 |
1897 | 5638 | 3.192844 | CAGAGGGAGTACGTGTACAACAT | 59.807 | 47.826 | 12.32 | 2.53 | 38.48 | 2.71 |
1898 | 5639 | 3.830755 | AGAGGGAGTACGTGTACAACATT | 59.169 | 43.478 | 12.32 | 0.00 | 38.48 | 2.71 |
1899 | 5640 | 4.282703 | AGAGGGAGTACGTGTACAACATTT | 59.717 | 41.667 | 12.32 | 0.00 | 38.48 | 2.32 |
1900 | 5641 | 4.964593 | AGGGAGTACGTGTACAACATTTT | 58.035 | 39.130 | 12.32 | 0.00 | 38.48 | 1.82 |
1901 | 5642 | 4.992951 | AGGGAGTACGTGTACAACATTTTC | 59.007 | 41.667 | 12.32 | 0.00 | 38.48 | 2.29 |
1902 | 5643 | 4.751098 | GGGAGTACGTGTACAACATTTTCA | 59.249 | 41.667 | 12.32 | 0.00 | 38.48 | 2.69 |
1903 | 5644 | 5.236911 | GGGAGTACGTGTACAACATTTTCAA | 59.763 | 40.000 | 12.32 | 0.00 | 38.48 | 2.69 |
1904 | 5645 | 6.238429 | GGGAGTACGTGTACAACATTTTCAAA | 60.238 | 38.462 | 12.32 | 0.00 | 38.48 | 2.69 |
1905 | 5646 | 6.630045 | GGAGTACGTGTACAACATTTTCAAAC | 59.370 | 38.462 | 12.32 | 0.00 | 38.48 | 2.93 |
1906 | 5647 | 6.488817 | AGTACGTGTACAACATTTTCAAACC | 58.511 | 36.000 | 12.32 | 0.00 | 38.48 | 3.27 |
1907 | 5648 | 4.344448 | ACGTGTACAACATTTTCAAACCG | 58.656 | 39.130 | 0.00 | 0.00 | 0.00 | 4.44 |
1908 | 5649 | 3.726730 | CGTGTACAACATTTTCAAACCGG | 59.273 | 43.478 | 0.00 | 0.00 | 0.00 | 5.28 |
1909 | 5650 | 3.487942 | GTGTACAACATTTTCAAACCGGC | 59.512 | 43.478 | 0.00 | 0.00 | 0.00 | 6.13 |
1910 | 5651 | 2.969628 | ACAACATTTTCAAACCGGCA | 57.030 | 40.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1911 | 5652 | 2.820330 | ACAACATTTTCAAACCGGCAG | 58.180 | 42.857 | 0.00 | 0.00 | 0.00 | 4.85 |
1912 | 5653 | 2.167487 | ACAACATTTTCAAACCGGCAGT | 59.833 | 40.909 | 0.00 | 0.00 | 0.00 | 4.40 |
1913 | 5654 | 3.381908 | ACAACATTTTCAAACCGGCAGTA | 59.618 | 39.130 | 0.00 | 0.00 | 0.00 | 2.74 |
1914 | 5655 | 3.915437 | ACATTTTCAAACCGGCAGTAG | 57.085 | 42.857 | 0.00 | 0.00 | 0.00 | 2.57 |
1915 | 5656 | 3.482436 | ACATTTTCAAACCGGCAGTAGA | 58.518 | 40.909 | 0.00 | 0.00 | 0.00 | 2.59 |
1916 | 5657 | 3.886505 | ACATTTTCAAACCGGCAGTAGAA | 59.113 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
1917 | 5658 | 4.339814 | ACATTTTCAAACCGGCAGTAGAAA | 59.660 | 37.500 | 0.00 | 2.53 | 33.35 | 2.52 |
1918 | 5659 | 4.561735 | TTTTCAAACCGGCAGTAGAAAG | 57.438 | 40.909 | 0.00 | 0.00 | 35.38 | 2.62 |
1919 | 5660 | 1.519408 | TCAAACCGGCAGTAGAAAGC | 58.481 | 50.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1920 | 5661 | 0.165944 | CAAACCGGCAGTAGAAAGCG | 59.834 | 55.000 | 0.00 | 0.00 | 0.00 | 4.68 |
1921 | 5662 | 0.250166 | AAACCGGCAGTAGAAAGCGT | 60.250 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
1922 | 5663 | 0.949105 | AACCGGCAGTAGAAAGCGTG | 60.949 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1923 | 5664 | 1.080093 | CCGGCAGTAGAAAGCGTGA | 60.080 | 57.895 | 0.00 | 0.00 | 0.00 | 4.35 |
1924 | 5665 | 0.460284 | CCGGCAGTAGAAAGCGTGAT | 60.460 | 55.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1925 | 5666 | 0.647410 | CGGCAGTAGAAAGCGTGATG | 59.353 | 55.000 | 0.00 | 0.00 | 0.00 | 3.07 |
1926 | 5667 | 1.735700 | CGGCAGTAGAAAGCGTGATGA | 60.736 | 52.381 | 0.00 | 0.00 | 0.00 | 2.92 |
1927 | 5668 | 2.346803 | GGCAGTAGAAAGCGTGATGAA | 58.653 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
1928 | 5669 | 2.094417 | GGCAGTAGAAAGCGTGATGAAC | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1929 | 5670 | 2.094417 | GCAGTAGAAAGCGTGATGAACC | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.62 |
1930 | 5671 | 2.345641 | CAGTAGAAAGCGTGATGAACCG | 59.654 | 50.000 | 0.00 | 0.00 | 0.00 | 4.44 |
1931 | 5672 | 2.029290 | AGTAGAAAGCGTGATGAACCGT | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 4.83 |
1932 | 5673 | 2.736144 | AGAAAGCGTGATGAACCGTA | 57.264 | 45.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1933 | 5674 | 2.334838 | AGAAAGCGTGATGAACCGTAC | 58.665 | 47.619 | 0.00 | 0.00 | 0.00 | 3.67 |
1934 | 5675 | 2.063266 | GAAAGCGTGATGAACCGTACA | 58.937 | 47.619 | 0.00 | 0.00 | 0.00 | 2.90 |
1935 | 5676 | 2.380084 | AAGCGTGATGAACCGTACAT | 57.620 | 45.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1936 | 5677 | 1.640428 | AGCGTGATGAACCGTACATG | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1937 | 5678 | 0.026285 | GCGTGATGAACCGTACATGC | 59.974 | 55.000 | 0.00 | 0.00 | 37.93 | 4.06 |
1938 | 5679 | 1.355005 | CGTGATGAACCGTACATGCA | 58.645 | 50.000 | 0.00 | 0.00 | 0.00 | 3.96 |
1939 | 5680 | 1.324435 | CGTGATGAACCGTACATGCAG | 59.676 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
1940 | 5681 | 2.346803 | GTGATGAACCGTACATGCAGT | 58.653 | 47.619 | 0.00 | 0.00 | 0.00 | 4.40 |
1941 | 5682 | 2.094258 | GTGATGAACCGTACATGCAGTG | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.66 |
1942 | 5683 | 2.289382 | TGATGAACCGTACATGCAGTGT | 60.289 | 45.455 | 0.00 | 0.00 | 44.95 | 3.55 |
1943 | 5684 | 3.056465 | TGATGAACCGTACATGCAGTGTA | 60.056 | 43.478 | 0.00 | 0.00 | 42.29 | 2.90 |
1952 | 5693 | 1.800586 | ACATGCAGTGTACAAGCTTCG | 59.199 | 47.619 | 18.84 | 11.34 | 39.91 | 3.79 |
1953 | 5694 | 1.800586 | CATGCAGTGTACAAGCTTCGT | 59.199 | 47.619 | 18.84 | 1.07 | 0.00 | 3.85 |
1954 | 5695 | 1.497991 | TGCAGTGTACAAGCTTCGTC | 58.502 | 50.000 | 18.84 | 0.00 | 0.00 | 4.20 |
1955 | 5696 | 1.202475 | TGCAGTGTACAAGCTTCGTCA | 60.202 | 47.619 | 18.84 | 0.00 | 0.00 | 4.35 |
1956 | 5697 | 2.069273 | GCAGTGTACAAGCTTCGTCAT | 58.931 | 47.619 | 12.85 | 0.00 | 0.00 | 3.06 |
1960 | 5701 | 5.518847 | GCAGTGTACAAGCTTCGTCATAATA | 59.481 | 40.000 | 12.85 | 0.00 | 0.00 | 0.98 |
1964 | 5705 | 9.162764 | AGTGTACAAGCTTCGTCATAATAAAAT | 57.837 | 29.630 | 0.00 | 0.00 | 0.00 | 1.82 |
1971 | 5712 | 8.620533 | AGCTTCGTCATAATAAAATTTTGAGC | 57.379 | 30.769 | 13.76 | 2.83 | 0.00 | 4.26 |
1972 | 5713 | 7.702348 | AGCTTCGTCATAATAAAATTTTGAGCC | 59.298 | 33.333 | 13.76 | 0.00 | 0.00 | 4.70 |
1977 | 5718 | 9.658475 | CGTCATAATAAAATTTTGAGCCGATAA | 57.342 | 29.630 | 13.76 | 0.00 | 0.00 | 1.75 |
1995 | 5740 | 8.618677 | AGCCGATAAAAGGTTAATTAGCTAAAC | 58.381 | 33.333 | 10.85 | 4.22 | 33.29 | 2.01 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
128 | 129 | 1.834822 | CGAGATCCCCCTCCCTCAC | 60.835 | 68.421 | 0.00 | 0.00 | 0.00 | 3.51 |
131 | 132 | 3.036959 | ACCGAGATCCCCCTCCCT | 61.037 | 66.667 | 0.00 | 0.00 | 0.00 | 4.20 |
150 | 151 | 2.687700 | ACTACTAGCCGAAGTCGAGA | 57.312 | 50.000 | 1.43 | 0.00 | 43.02 | 4.04 |
159 | 160 | 5.526506 | ACCATAACCTAAACTACTAGCCG | 57.473 | 43.478 | 0.00 | 0.00 | 0.00 | 5.52 |
200 | 3368 | 1.523938 | GCCATCTACCTGAACGCCC | 60.524 | 63.158 | 0.00 | 0.00 | 0.00 | 6.13 |
262 | 3430 | 6.494491 | TCAAATCCATCCTGATGAACAAACTT | 59.506 | 34.615 | 8.69 | 0.00 | 41.20 | 2.66 |
270 | 3438 | 4.748857 | GCTCCATCAAATCCATCCTGATGA | 60.749 | 45.833 | 8.69 | 0.00 | 46.14 | 2.92 |
275 | 3443 | 2.107901 | GGAGCTCCATCAAATCCATCCT | 59.892 | 50.000 | 28.43 | 0.00 | 35.64 | 3.24 |
285 | 3453 | 0.033503 | TCTACACCGGAGCTCCATCA | 60.034 | 55.000 | 31.67 | 10.99 | 35.14 | 3.07 |
325 | 3493 | 3.887621 | TGAGAAACCCTAACCTCATCG | 57.112 | 47.619 | 0.00 | 0.00 | 31.45 | 3.84 |
337 | 3505 | 2.788786 | CGCACACAAACAATGAGAAACC | 59.211 | 45.455 | 0.00 | 0.00 | 0.00 | 3.27 |
345 | 3513 | 3.743911 | TCTATTCGTCGCACACAAACAAT | 59.256 | 39.130 | 0.00 | 0.00 | 0.00 | 2.71 |
393 | 3573 | 0.763652 | AGAGCTGGAATCATCGCCAT | 59.236 | 50.000 | 0.00 | 0.00 | 32.89 | 4.40 |
405 | 3585 | 0.747255 | ATGTGGCGTACTAGAGCTGG | 59.253 | 55.000 | 0.00 | 0.00 | 0.00 | 4.85 |
424 | 3604 | 2.046009 | TTGTGCACGTGCCCCTAAGA | 62.046 | 55.000 | 35.72 | 14.25 | 41.18 | 2.10 |
445 | 3625 | 4.988540 | TTCGTAGATGACAGTTGGAAAGTG | 59.011 | 41.667 | 0.00 | 0.00 | 45.54 | 3.16 |
450 | 3630 | 3.824443 | TGAGTTCGTAGATGACAGTTGGA | 59.176 | 43.478 | 0.00 | 0.00 | 35.04 | 3.53 |
453 | 3633 | 4.989168 | GGTTTGAGTTCGTAGATGACAGTT | 59.011 | 41.667 | 0.00 | 0.00 | 35.04 | 3.16 |
463 | 3643 | 2.353011 | CCTAAGCCGGTTTGAGTTCGTA | 60.353 | 50.000 | 14.54 | 0.00 | 0.00 | 3.43 |
469 | 3649 | 1.134491 | CCCTACCTAAGCCGGTTTGAG | 60.134 | 57.143 | 14.54 | 7.18 | 38.49 | 3.02 |
481 | 3661 | 0.040058 | TGTTGACGCTCCCCTACCTA | 59.960 | 55.000 | 0.00 | 0.00 | 0.00 | 3.08 |
543 | 3745 | 9.627123 | GGGCAAAGCATCCTATATACATAATAA | 57.373 | 33.333 | 0.00 | 0.00 | 0.00 | 1.40 |
574 | 3776 | 6.649557 | ACCTAGATCTTTTACAAAGGTTCGTG | 59.350 | 38.462 | 0.00 | 0.00 | 31.95 | 4.35 |
694 | 3899 | 6.417635 | CACTTGCGCTTCAGAAAAGAAAATAA | 59.582 | 34.615 | 9.73 | 0.00 | 0.00 | 1.40 |
696 | 3901 | 4.741676 | CACTTGCGCTTCAGAAAAGAAAAT | 59.258 | 37.500 | 9.73 | 0.00 | 0.00 | 1.82 |
744 | 3952 | 0.517316 | CTAGTCACACCTTTTGCGCC | 59.483 | 55.000 | 4.18 | 0.00 | 0.00 | 6.53 |
746 | 3954 | 4.545823 | TTTTCTAGTCACACCTTTTGCG | 57.454 | 40.909 | 0.00 | 0.00 | 0.00 | 4.85 |
817 | 4025 | 0.740737 | CCTTTCATCGCCATTCCCAC | 59.259 | 55.000 | 0.00 | 0.00 | 0.00 | 4.61 |
880 | 4088 | 2.187424 | GAGCAGAGCAGGAGCAGG | 59.813 | 66.667 | 0.00 | 0.00 | 45.49 | 4.85 |
890 | 4113 | 1.096386 | GGCAATGGAGCAGAGCAGAG | 61.096 | 60.000 | 0.00 | 0.00 | 35.83 | 3.35 |
912 | 4135 | 2.105466 | CGAGGCAGGCAGAGAAAGC | 61.105 | 63.158 | 0.00 | 0.00 | 0.00 | 3.51 |
924 | 4147 | 0.536233 | CTAGCTAGCTCCTCGAGGCA | 60.536 | 60.000 | 27.39 | 14.38 | 34.44 | 4.75 |
925 | 4148 | 0.250553 | TCTAGCTAGCTCCTCGAGGC | 60.251 | 60.000 | 27.39 | 16.00 | 34.44 | 4.70 |
926 | 4149 | 2.264005 | TTCTAGCTAGCTCCTCGAGG | 57.736 | 55.000 | 26.32 | 26.32 | 0.00 | 4.63 |
927 | 4150 | 2.031157 | GCTTTCTAGCTAGCTCCTCGAG | 60.031 | 54.545 | 23.26 | 13.01 | 44.27 | 4.04 |
928 | 4151 | 1.950909 | GCTTTCTAGCTAGCTCCTCGA | 59.049 | 52.381 | 23.26 | 10.96 | 44.27 | 4.04 |
945 | 4172 | 1.235281 | GGCGGGTTTCTTTCTCGCTT | 61.235 | 55.000 | 9.86 | 0.00 | 44.88 | 4.68 |
948 | 4175 | 2.388232 | CCGGCGGGTTTCTTTCTCG | 61.388 | 63.158 | 20.56 | 0.00 | 0.00 | 4.04 |
949 | 4176 | 2.687805 | GCCGGCGGGTTTCTTTCTC | 61.688 | 63.158 | 29.48 | 2.10 | 34.97 | 2.87 |
969 | 4196 | 1.001760 | TCCCCTTCCTCTTCTCCGG | 59.998 | 63.158 | 0.00 | 0.00 | 0.00 | 5.14 |
974 | 4201 | 0.340208 | TCTCCCTCCCCTTCCTCTTC | 59.660 | 60.000 | 0.00 | 0.00 | 0.00 | 2.87 |
975 | 4202 | 0.341609 | CTCTCCCTCCCCTTCCTCTT | 59.658 | 60.000 | 0.00 | 0.00 | 0.00 | 2.85 |
976 | 4203 | 1.598856 | CCTCTCCCTCCCCTTCCTCT | 61.599 | 65.000 | 0.00 | 0.00 | 0.00 | 3.69 |
977 | 4204 | 1.074850 | CCTCTCCCTCCCCTTCCTC | 60.075 | 68.421 | 0.00 | 0.00 | 0.00 | 3.71 |
978 | 4205 | 2.652113 | CCCTCTCCCTCCCCTTCCT | 61.652 | 68.421 | 0.00 | 0.00 | 0.00 | 3.36 |
979 | 4206 | 2.040359 | CCCTCTCCCTCCCCTTCC | 60.040 | 72.222 | 0.00 | 0.00 | 0.00 | 3.46 |
1015 | 4242 | 4.429212 | CACCGCGATCACCACCGA | 62.429 | 66.667 | 8.23 | 0.00 | 0.00 | 4.69 |
1074 | 4301 | 4.660938 | AAGTGGTGCTTCCCGGGC | 62.661 | 66.667 | 18.49 | 4.56 | 30.06 | 6.13 |
1180 | 4407 | 1.153389 | TGATGTGCACGCCGATGAT | 60.153 | 52.632 | 13.13 | 0.00 | 0.00 | 2.45 |
1211 | 4438 | 2.202987 | GATGGAGCTCAGCCGGTG | 60.203 | 66.667 | 17.19 | 0.00 | 0.00 | 4.94 |
1293 | 4534 | 3.420839 | ACAAAACAAAACAGAGAGGCG | 57.579 | 42.857 | 0.00 | 0.00 | 0.00 | 5.52 |
1334 | 4575 | 9.452065 | CATGATCACATACACTACTACAAGTAC | 57.548 | 37.037 | 0.00 | 0.00 | 35.09 | 2.73 |
1348 | 4589 | 6.370593 | ACAACAAACGAACATGATCACATAC | 58.629 | 36.000 | 0.00 | 0.00 | 35.09 | 2.39 |
1349 | 4590 | 6.348132 | GGACAACAAACGAACATGATCACATA | 60.348 | 38.462 | 0.00 | 0.00 | 35.09 | 2.29 |
1363 | 4604 | 7.197703 | AGTTTAATTACCAAGGACAACAAACG | 58.802 | 34.615 | 0.00 | 0.00 | 0.00 | 3.60 |
1372 | 4613 | 2.674357 | GCGCGAGTTTAATTACCAAGGA | 59.326 | 45.455 | 12.10 | 0.00 | 0.00 | 3.36 |
1374 | 4615 | 2.093152 | ACGCGCGAGTTTAATTACCAAG | 59.907 | 45.455 | 39.36 | 0.21 | 0.00 | 3.61 |
1376 | 4617 | 1.712401 | ACGCGCGAGTTTAATTACCA | 58.288 | 45.000 | 39.36 | 0.00 | 0.00 | 3.25 |
1377 | 4618 | 3.243643 | ACATACGCGCGAGTTTAATTACC | 59.756 | 43.478 | 39.36 | 0.00 | 0.00 | 2.85 |
1386 | 4627 | 1.298413 | CAGCTACATACGCGCGAGT | 60.298 | 57.895 | 39.36 | 30.25 | 0.00 | 4.18 |
1430 | 4673 | 3.096092 | GTGCCACTCCCATGGAAAATTA | 58.904 | 45.455 | 15.22 | 0.00 | 43.02 | 1.40 |
1443 | 4686 | 7.060633 | CGATTAAATAACTTGTTTGTGCCACTC | 59.939 | 37.037 | 0.00 | 0.00 | 0.00 | 3.51 |
1453 | 4696 | 8.324163 | AGCTTCAGACGATTAAATAACTTGTT | 57.676 | 30.769 | 0.00 | 0.00 | 0.00 | 2.83 |
1469 | 4713 | 6.215495 | ACCAGTTAATCTAGAGCTTCAGAC | 57.785 | 41.667 | 0.00 | 0.00 | 0.00 | 3.51 |
1540 | 4790 | 6.014647 | TGTAGGAGTAGCTGAAAAGAAGGTA | 58.985 | 40.000 | 0.00 | 0.00 | 0.00 | 3.08 |
1558 | 4808 | 1.732941 | ATTTCATGCGCGTTGTAGGA | 58.267 | 45.000 | 8.43 | 0.00 | 0.00 | 2.94 |
1559 | 4809 | 2.542766 | AATTTCATGCGCGTTGTAGG | 57.457 | 45.000 | 8.43 | 0.00 | 0.00 | 3.18 |
1561 | 4811 | 3.544356 | TGAAATTTCATGCGCGTTGTA | 57.456 | 38.095 | 16.91 | 0.00 | 31.01 | 2.41 |
1562 | 4812 | 2.414058 | TGAAATTTCATGCGCGTTGT | 57.586 | 40.000 | 16.91 | 0.00 | 31.01 | 3.32 |
1563 | 4813 | 2.159986 | GGTTGAAATTTCATGCGCGTTG | 60.160 | 45.455 | 21.10 | 6.40 | 37.00 | 4.10 |
1564 | 4814 | 2.058057 | GGTTGAAATTTCATGCGCGTT | 58.942 | 42.857 | 21.10 | 0.00 | 37.00 | 4.84 |
1565 | 4815 | 1.000827 | TGGTTGAAATTTCATGCGCGT | 60.001 | 42.857 | 21.10 | 0.00 | 37.00 | 6.01 |
1566 | 4816 | 1.386412 | GTGGTTGAAATTTCATGCGCG | 59.614 | 47.619 | 21.10 | 0.00 | 37.00 | 6.86 |
1567 | 4817 | 1.726248 | GGTGGTTGAAATTTCATGCGC | 59.274 | 47.619 | 21.10 | 0.00 | 37.00 | 6.09 |
1568 | 4818 | 2.336667 | GGGTGGTTGAAATTTCATGCG | 58.663 | 47.619 | 21.10 | 0.00 | 37.00 | 4.73 |
1569 | 4819 | 2.302733 | AGGGGTGGTTGAAATTTCATGC | 59.697 | 45.455 | 21.10 | 15.99 | 37.00 | 4.06 |
1570 | 4820 | 3.055891 | GGAGGGGTGGTTGAAATTTCATG | 60.056 | 47.826 | 21.10 | 0.00 | 37.00 | 3.07 |
1571 | 4821 | 3.173151 | GGAGGGGTGGTTGAAATTTCAT | 58.827 | 45.455 | 21.10 | 4.09 | 37.00 | 2.57 |
1572 | 4822 | 2.091055 | TGGAGGGGTGGTTGAAATTTCA | 60.091 | 45.455 | 16.91 | 16.91 | 34.92 | 2.69 |
1573 | 4823 | 2.562738 | CTGGAGGGGTGGTTGAAATTTC | 59.437 | 50.000 | 11.41 | 11.41 | 0.00 | 2.17 |
1574 | 4824 | 2.608623 | CTGGAGGGGTGGTTGAAATTT | 58.391 | 47.619 | 0.00 | 0.00 | 0.00 | 1.82 |
1575 | 4825 | 1.827245 | GCTGGAGGGGTGGTTGAAATT | 60.827 | 52.381 | 0.00 | 0.00 | 0.00 | 1.82 |
1576 | 4826 | 0.251787 | GCTGGAGGGGTGGTTGAAAT | 60.252 | 55.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1584 | 4834 | 1.867595 | AAGGGAATGCTGGAGGGGTG | 61.868 | 60.000 | 0.00 | 0.00 | 0.00 | 4.61 |
1591 | 4841 | 3.073503 | TGGATATCAGAAGGGAATGCTGG | 59.926 | 47.826 | 4.83 | 0.00 | 0.00 | 4.85 |
1594 | 4844 | 4.070716 | CTGTGGATATCAGAAGGGAATGC | 58.929 | 47.826 | 4.83 | 0.00 | 35.20 | 3.56 |
1596 | 4846 | 7.013823 | CATACTGTGGATATCAGAAGGGAAT | 57.986 | 40.000 | 4.83 | 0.00 | 36.81 | 3.01 |
1597 | 4847 | 6.425210 | CATACTGTGGATATCAGAAGGGAA | 57.575 | 41.667 | 4.83 | 0.00 | 36.81 | 3.97 |
1630 | 4880 | 1.674441 | CACATGGGCAGCTACTGATTG | 59.326 | 52.381 | 0.00 | 0.00 | 32.44 | 2.67 |
1660 | 4913 | 6.172136 | AGTAGCTGCATTAGAGTCATGAAT | 57.828 | 37.500 | 4.12 | 0.00 | 0.00 | 2.57 |
1668 | 4921 | 5.521906 | TCCAACTAGTAGCTGCATTAGAG | 57.478 | 43.478 | 4.12 | 0.00 | 0.00 | 2.43 |
1672 | 4925 | 6.038714 | GCTAAAATCCAACTAGTAGCTGCATT | 59.961 | 38.462 | 4.12 | 0.00 | 32.94 | 3.56 |
1673 | 4926 | 5.529060 | GCTAAAATCCAACTAGTAGCTGCAT | 59.471 | 40.000 | 4.12 | 0.00 | 32.94 | 3.96 |
1676 | 4929 | 5.428253 | TGGCTAAAATCCAACTAGTAGCTG | 58.572 | 41.667 | 9.27 | 0.00 | 35.42 | 4.24 |
1677 | 4930 | 5.693769 | TGGCTAAAATCCAACTAGTAGCT | 57.306 | 39.130 | 9.27 | 0.00 | 35.42 | 3.32 |
1678 | 4931 | 5.880887 | ACTTGGCTAAAATCCAACTAGTAGC | 59.119 | 40.000 | 0.00 | 0.00 | 38.57 | 3.58 |
1680 | 4933 | 9.969001 | ATTTACTTGGCTAAAATCCAACTAGTA | 57.031 | 29.630 | 0.00 | 0.00 | 38.57 | 1.82 |
1685 | 4938 | 7.978975 | TGCATATTTACTTGGCTAAAATCCAAC | 59.021 | 33.333 | 0.00 | 0.00 | 38.57 | 3.77 |
1691 | 5041 | 8.417884 | GGGTATTGCATATTTACTTGGCTAAAA | 58.582 | 33.333 | 0.00 | 0.00 | 0.00 | 1.52 |
1696 | 5046 | 5.782893 | TGGGTATTGCATATTTACTTGGC | 57.217 | 39.130 | 0.00 | 0.00 | 0.00 | 4.52 |
1716 | 5066 | 7.703058 | ACAGGGAGTAGTTTTAATTGATTGG | 57.297 | 36.000 | 0.00 | 0.00 | 0.00 | 3.16 |
1728 | 5469 | 8.822805 | TGTTTTAGATCATTACAGGGAGTAGTT | 58.177 | 33.333 | 0.00 | 0.00 | 33.43 | 2.24 |
1729 | 5470 | 8.375493 | TGTTTTAGATCATTACAGGGAGTAGT | 57.625 | 34.615 | 0.00 | 0.00 | 33.43 | 2.73 |
1730 | 5471 | 9.838339 | ATTGTTTTAGATCATTACAGGGAGTAG | 57.162 | 33.333 | 0.00 | 0.00 | 33.43 | 2.57 |
1731 | 5472 | 9.832445 | GATTGTTTTAGATCATTACAGGGAGTA | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 2.59 |
1732 | 5473 | 8.552296 | AGATTGTTTTAGATCATTACAGGGAGT | 58.448 | 33.333 | 0.00 | 0.00 | 0.00 | 3.85 |
1733 | 5474 | 8.970859 | AGATTGTTTTAGATCATTACAGGGAG | 57.029 | 34.615 | 0.00 | 0.00 | 0.00 | 4.30 |
1761 | 5502 | 8.842280 | GCTAGCTACTCTCTCTGTAAAGAAATA | 58.158 | 37.037 | 7.70 | 0.00 | 0.00 | 1.40 |
1762 | 5503 | 7.559897 | AGCTAGCTACTCTCTCTGTAAAGAAAT | 59.440 | 37.037 | 17.69 | 0.00 | 0.00 | 2.17 |
1763 | 5504 | 6.887545 | AGCTAGCTACTCTCTCTGTAAAGAAA | 59.112 | 38.462 | 17.69 | 0.00 | 0.00 | 2.52 |
1764 | 5505 | 6.419791 | AGCTAGCTACTCTCTCTGTAAAGAA | 58.580 | 40.000 | 17.69 | 0.00 | 0.00 | 2.52 |
1765 | 5506 | 5.996644 | AGCTAGCTACTCTCTCTGTAAAGA | 58.003 | 41.667 | 17.69 | 0.00 | 0.00 | 2.52 |
1767 | 5508 | 7.284074 | ACATAGCTAGCTACTCTCTCTGTAAA | 58.716 | 38.462 | 26.41 | 1.24 | 0.00 | 2.01 |
1769 | 5510 | 6.428083 | ACATAGCTAGCTACTCTCTCTGTA | 57.572 | 41.667 | 26.41 | 1.95 | 0.00 | 2.74 |
1770 | 5511 | 5.304686 | ACATAGCTAGCTACTCTCTCTGT | 57.695 | 43.478 | 26.41 | 20.31 | 0.00 | 3.41 |
1771 | 5512 | 8.258007 | AGTATACATAGCTAGCTACTCTCTCTG | 58.742 | 40.741 | 26.41 | 19.68 | 0.00 | 3.35 |
1772 | 5513 | 8.375493 | AGTATACATAGCTAGCTACTCTCTCT | 57.625 | 38.462 | 26.41 | 16.83 | 0.00 | 3.10 |
1773 | 5514 | 9.444600 | AAAGTATACATAGCTAGCTACTCTCTC | 57.555 | 37.037 | 26.41 | 15.06 | 0.00 | 3.20 |
1774 | 5515 | 9.802039 | AAAAGTATACATAGCTAGCTACTCTCT | 57.198 | 33.333 | 26.41 | 15.89 | 0.00 | 3.10 |
1776 | 5517 | 9.575868 | TGAAAAGTATACATAGCTAGCTACTCT | 57.424 | 33.333 | 26.41 | 13.63 | 0.00 | 3.24 |
1777 | 5518 | 9.834628 | CTGAAAAGTATACATAGCTAGCTACTC | 57.165 | 37.037 | 26.41 | 12.56 | 0.00 | 2.59 |
1778 | 5519 | 8.301002 | GCTGAAAAGTATACATAGCTAGCTACT | 58.699 | 37.037 | 26.41 | 17.30 | 0.00 | 2.57 |
1779 | 5520 | 8.082852 | TGCTGAAAAGTATACATAGCTAGCTAC | 58.917 | 37.037 | 26.41 | 15.24 | 0.00 | 3.58 |
1780 | 5521 | 8.082852 | GTGCTGAAAAGTATACATAGCTAGCTA | 58.917 | 37.037 | 26.09 | 26.09 | 0.00 | 3.32 |
1781 | 5522 | 6.926272 | GTGCTGAAAAGTATACATAGCTAGCT | 59.074 | 38.462 | 23.12 | 23.12 | 0.00 | 3.32 |
1782 | 5523 | 6.701841 | TGTGCTGAAAAGTATACATAGCTAGC | 59.298 | 38.462 | 6.62 | 6.62 | 0.00 | 3.42 |
1783 | 5524 | 8.824159 | ATGTGCTGAAAAGTATACATAGCTAG | 57.176 | 34.615 | 5.50 | 0.00 | 0.00 | 3.42 |
1794 | 5535 | 9.559732 | AGCATGTATTATATGTGCTGAAAAGTA | 57.440 | 29.630 | 11.59 | 0.00 | 43.84 | 2.24 |
1795 | 5536 | 8.455903 | AGCATGTATTATATGTGCTGAAAAGT | 57.544 | 30.769 | 11.59 | 0.00 | 43.84 | 2.66 |
1800 | 5541 | 8.625786 | AATCAAGCATGTATTATATGTGCTGA | 57.374 | 30.769 | 12.64 | 12.10 | 44.66 | 4.26 |
1803 | 5544 | 9.979270 | GACTAATCAAGCATGTATTATATGTGC | 57.021 | 33.333 | 0.00 | 4.39 | 36.11 | 4.57 |
1830 | 5571 | 0.246635 | TGCTTCTAGGTCGGCAGTTC | 59.753 | 55.000 | 0.00 | 0.00 | 0.00 | 3.01 |
1833 | 5574 | 1.517257 | CGTGCTTCTAGGTCGGCAG | 60.517 | 63.158 | 0.00 | 0.00 | 35.29 | 4.85 |
1848 | 5589 | 3.327754 | GTATAGGGCGTGCGCGTG | 61.328 | 66.667 | 22.18 | 0.00 | 43.06 | 5.34 |
1849 | 5590 | 3.829044 | TGTATAGGGCGTGCGCGT | 61.829 | 61.111 | 22.18 | 3.77 | 43.06 | 6.01 |
1850 | 5591 | 3.327754 | GTGTATAGGGCGTGCGCG | 61.328 | 66.667 | 16.86 | 16.86 | 43.06 | 6.86 |
1851 | 5592 | 2.965462 | GGTGTATAGGGCGTGCGC | 60.965 | 66.667 | 8.17 | 8.17 | 41.06 | 6.09 |
1852 | 5593 | 2.279918 | GGGTGTATAGGGCGTGCG | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1853 | 5594 | 2.279918 | CGGGTGTATAGGGCGTGC | 60.280 | 66.667 | 0.00 | 0.00 | 0.00 | 5.34 |
1854 | 5595 | 1.105167 | TCTCGGGTGTATAGGGCGTG | 61.105 | 60.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1855 | 5596 | 1.105759 | GTCTCGGGTGTATAGGGCGT | 61.106 | 60.000 | 0.00 | 0.00 | 0.00 | 5.68 |
1857 | 5598 | 0.757935 | TGGTCTCGGGTGTATAGGGC | 60.758 | 60.000 | 0.00 | 0.00 | 0.00 | 5.19 |
1858 | 5599 | 1.133575 | TCTGGTCTCGGGTGTATAGGG | 60.134 | 57.143 | 0.00 | 0.00 | 0.00 | 3.53 |
1859 | 5600 | 2.231529 | CTCTGGTCTCGGGTGTATAGG | 58.768 | 57.143 | 0.00 | 0.00 | 0.00 | 2.57 |
1860 | 5601 | 2.231529 | CCTCTGGTCTCGGGTGTATAG | 58.768 | 57.143 | 0.00 | 0.00 | 0.00 | 1.31 |
1862 | 5603 | 0.397254 | CCCTCTGGTCTCGGGTGTAT | 60.397 | 60.000 | 0.00 | 0.00 | 33.16 | 2.29 |
1863 | 5604 | 1.000019 | CCCTCTGGTCTCGGGTGTA | 60.000 | 63.158 | 0.00 | 0.00 | 33.16 | 2.90 |
1864 | 5605 | 2.283966 | CCCTCTGGTCTCGGGTGT | 60.284 | 66.667 | 0.00 | 0.00 | 33.16 | 4.16 |
1865 | 5606 | 2.037367 | TCCCTCTGGTCTCGGGTG | 59.963 | 66.667 | 0.00 | 0.00 | 39.10 | 4.61 |
1866 | 5607 | 1.212934 | TACTCCCTCTGGTCTCGGGT | 61.213 | 60.000 | 0.00 | 0.00 | 39.10 | 5.28 |
1869 | 5610 | 0.392729 | ACGTACTCCCTCTGGTCTCG | 60.393 | 60.000 | 0.00 | 0.00 | 0.00 | 4.04 |
1870 | 5611 | 1.096416 | CACGTACTCCCTCTGGTCTC | 58.904 | 60.000 | 0.00 | 0.00 | 0.00 | 3.36 |
1872 | 5613 | 1.742268 | GTACACGTACTCCCTCTGGTC | 59.258 | 57.143 | 0.00 | 0.00 | 33.45 | 4.02 |
1874 | 5615 | 1.830279 | TGTACACGTACTCCCTCTGG | 58.170 | 55.000 | 8.69 | 0.00 | 37.00 | 3.86 |
1875 | 5616 | 2.555325 | TGTTGTACACGTACTCCCTCTG | 59.445 | 50.000 | 8.69 | 0.00 | 37.00 | 3.35 |
1876 | 5617 | 2.867624 | TGTTGTACACGTACTCCCTCT | 58.132 | 47.619 | 8.69 | 0.00 | 37.00 | 3.69 |
1877 | 5618 | 3.863142 | ATGTTGTACACGTACTCCCTC | 57.137 | 47.619 | 8.69 | 0.00 | 37.00 | 4.30 |
1878 | 5619 | 4.612264 | AAATGTTGTACACGTACTCCCT | 57.388 | 40.909 | 8.69 | 0.00 | 37.00 | 4.20 |
1879 | 5620 | 4.751098 | TGAAAATGTTGTACACGTACTCCC | 59.249 | 41.667 | 8.69 | 0.00 | 37.00 | 4.30 |
1880 | 5621 | 5.910637 | TGAAAATGTTGTACACGTACTCC | 57.089 | 39.130 | 8.69 | 0.56 | 37.00 | 3.85 |
1881 | 5622 | 6.630045 | GGTTTGAAAATGTTGTACACGTACTC | 59.370 | 38.462 | 8.69 | 3.34 | 37.00 | 2.59 |
1882 | 5623 | 6.488817 | GGTTTGAAAATGTTGTACACGTACT | 58.511 | 36.000 | 8.69 | 0.00 | 37.00 | 2.73 |
1883 | 5624 | 5.393163 | CGGTTTGAAAATGTTGTACACGTAC | 59.607 | 40.000 | 0.00 | 0.22 | 36.63 | 3.67 |
1884 | 5625 | 5.499935 | CGGTTTGAAAATGTTGTACACGTA | 58.500 | 37.500 | 0.00 | 0.00 | 0.00 | 3.57 |
1885 | 5626 | 4.344448 | CGGTTTGAAAATGTTGTACACGT | 58.656 | 39.130 | 0.00 | 0.00 | 0.00 | 4.49 |
1886 | 5627 | 3.726730 | CCGGTTTGAAAATGTTGTACACG | 59.273 | 43.478 | 0.00 | 0.00 | 0.00 | 4.49 |
1887 | 5628 | 3.487942 | GCCGGTTTGAAAATGTTGTACAC | 59.512 | 43.478 | 1.90 | 0.00 | 0.00 | 2.90 |
1888 | 5629 | 3.130516 | TGCCGGTTTGAAAATGTTGTACA | 59.869 | 39.130 | 1.90 | 0.00 | 0.00 | 2.90 |
1889 | 5630 | 3.707793 | TGCCGGTTTGAAAATGTTGTAC | 58.292 | 40.909 | 1.90 | 0.00 | 0.00 | 2.90 |
1890 | 5631 | 3.381908 | ACTGCCGGTTTGAAAATGTTGTA | 59.618 | 39.130 | 1.90 | 0.00 | 0.00 | 2.41 |
1891 | 5632 | 2.167487 | ACTGCCGGTTTGAAAATGTTGT | 59.833 | 40.909 | 1.90 | 0.00 | 0.00 | 3.32 |
1892 | 5633 | 2.820330 | ACTGCCGGTTTGAAAATGTTG | 58.180 | 42.857 | 1.90 | 0.00 | 0.00 | 3.33 |
1893 | 5634 | 3.886505 | TCTACTGCCGGTTTGAAAATGTT | 59.113 | 39.130 | 1.90 | 0.00 | 0.00 | 2.71 |
1894 | 5635 | 3.482436 | TCTACTGCCGGTTTGAAAATGT | 58.518 | 40.909 | 1.90 | 0.00 | 0.00 | 2.71 |
1895 | 5636 | 4.497473 | TTCTACTGCCGGTTTGAAAATG | 57.503 | 40.909 | 1.90 | 0.00 | 0.00 | 2.32 |
1896 | 5637 | 4.558697 | GCTTTCTACTGCCGGTTTGAAAAT | 60.559 | 41.667 | 1.90 | 0.00 | 32.92 | 1.82 |
1897 | 5638 | 3.243267 | GCTTTCTACTGCCGGTTTGAAAA | 60.243 | 43.478 | 1.90 | 0.00 | 32.92 | 2.29 |
1898 | 5639 | 2.292292 | GCTTTCTACTGCCGGTTTGAAA | 59.708 | 45.455 | 1.90 | 6.34 | 32.61 | 2.69 |
1899 | 5640 | 1.877443 | GCTTTCTACTGCCGGTTTGAA | 59.123 | 47.619 | 1.90 | 0.00 | 0.00 | 2.69 |
1900 | 5641 | 1.519408 | GCTTTCTACTGCCGGTTTGA | 58.481 | 50.000 | 1.90 | 0.00 | 0.00 | 2.69 |
1901 | 5642 | 0.165944 | CGCTTTCTACTGCCGGTTTG | 59.834 | 55.000 | 1.90 | 0.00 | 0.00 | 2.93 |
1902 | 5643 | 0.250166 | ACGCTTTCTACTGCCGGTTT | 60.250 | 50.000 | 1.90 | 0.00 | 0.00 | 3.27 |
1903 | 5644 | 0.949105 | CACGCTTTCTACTGCCGGTT | 60.949 | 55.000 | 1.90 | 0.00 | 0.00 | 4.44 |
1904 | 5645 | 1.374252 | CACGCTTTCTACTGCCGGT | 60.374 | 57.895 | 1.90 | 0.00 | 0.00 | 5.28 |
1905 | 5646 | 0.460284 | ATCACGCTTTCTACTGCCGG | 60.460 | 55.000 | 0.00 | 0.00 | 0.00 | 6.13 |
1906 | 5647 | 0.647410 | CATCACGCTTTCTACTGCCG | 59.353 | 55.000 | 0.00 | 0.00 | 0.00 | 5.69 |
1907 | 5648 | 2.010145 | TCATCACGCTTTCTACTGCC | 57.990 | 50.000 | 0.00 | 0.00 | 0.00 | 4.85 |
1908 | 5649 | 2.094417 | GGTTCATCACGCTTTCTACTGC | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 4.40 |
1909 | 5650 | 2.345641 | CGGTTCATCACGCTTTCTACTG | 59.654 | 50.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1910 | 5651 | 2.029290 | ACGGTTCATCACGCTTTCTACT | 60.029 | 45.455 | 0.00 | 0.00 | 0.00 | 2.57 |
1911 | 5652 | 2.334838 | ACGGTTCATCACGCTTTCTAC | 58.665 | 47.619 | 0.00 | 0.00 | 0.00 | 2.59 |
1912 | 5653 | 2.736144 | ACGGTTCATCACGCTTTCTA | 57.264 | 45.000 | 0.00 | 0.00 | 0.00 | 2.10 |
1913 | 5654 | 2.288579 | TGTACGGTTCATCACGCTTTCT | 60.289 | 45.455 | 0.00 | 0.00 | 0.00 | 2.52 |
1914 | 5655 | 2.063266 | TGTACGGTTCATCACGCTTTC | 58.937 | 47.619 | 0.00 | 0.00 | 0.00 | 2.62 |
1915 | 5656 | 2.157834 | TGTACGGTTCATCACGCTTT | 57.842 | 45.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1916 | 5657 | 1.999735 | CATGTACGGTTCATCACGCTT | 59.000 | 47.619 | 0.00 | 0.00 | 0.00 | 4.68 |
1917 | 5658 | 1.640428 | CATGTACGGTTCATCACGCT | 58.360 | 50.000 | 0.00 | 0.00 | 0.00 | 5.07 |
1918 | 5659 | 0.026285 | GCATGTACGGTTCATCACGC | 59.974 | 55.000 | 0.00 | 0.00 | 0.00 | 5.34 |
1919 | 5660 | 1.324435 | CTGCATGTACGGTTCATCACG | 59.676 | 52.381 | 0.00 | 0.00 | 0.00 | 4.35 |
1920 | 5661 | 2.094258 | CACTGCATGTACGGTTCATCAC | 59.906 | 50.000 | 0.00 | 0.00 | 0.00 | 3.06 |
1921 | 5662 | 2.289382 | ACACTGCATGTACGGTTCATCA | 60.289 | 45.455 | 0.00 | 0.00 | 40.88 | 3.07 |
1922 | 5663 | 2.346803 | ACACTGCATGTACGGTTCATC | 58.653 | 47.619 | 0.00 | 0.00 | 40.88 | 2.92 |
1923 | 5664 | 2.472695 | ACACTGCATGTACGGTTCAT | 57.527 | 45.000 | 0.00 | 0.00 | 40.88 | 2.57 |
1924 | 5665 | 3.999821 | ACACTGCATGTACGGTTCA | 57.000 | 47.368 | 0.00 | 0.00 | 40.88 | 3.18 |
1931 | 5672 | 2.993220 | CGAAGCTTGTACACTGCATGTA | 59.007 | 45.455 | 18.52 | 5.28 | 43.19 | 2.29 |
1932 | 5673 | 1.800586 | CGAAGCTTGTACACTGCATGT | 59.199 | 47.619 | 18.52 | 6.93 | 46.06 | 3.21 |
1933 | 5674 | 1.800586 | ACGAAGCTTGTACACTGCATG | 59.199 | 47.619 | 18.52 | 11.46 | 0.00 | 4.06 |
1934 | 5675 | 2.069273 | GACGAAGCTTGTACACTGCAT | 58.931 | 47.619 | 18.52 | 9.46 | 0.00 | 3.96 |
1935 | 5676 | 1.202475 | TGACGAAGCTTGTACACTGCA | 60.202 | 47.619 | 18.52 | 0.00 | 0.00 | 4.41 |
1936 | 5677 | 1.497991 | TGACGAAGCTTGTACACTGC | 58.502 | 50.000 | 2.10 | 10.97 | 0.00 | 4.40 |
1937 | 5678 | 7.520119 | TTATTATGACGAAGCTTGTACACTG | 57.480 | 36.000 | 2.10 | 0.00 | 0.00 | 3.66 |
1938 | 5679 | 8.542497 | TTTTATTATGACGAAGCTTGTACACT | 57.458 | 30.769 | 2.10 | 0.00 | 0.00 | 3.55 |
1939 | 5680 | 9.769093 | AATTTTATTATGACGAAGCTTGTACAC | 57.231 | 29.630 | 2.10 | 0.00 | 0.00 | 2.90 |
1943 | 5684 | 9.906660 | TCAAAATTTTATTATGACGAAGCTTGT | 57.093 | 25.926 | 2.10 | 1.92 | 0.00 | 3.16 |
1945 | 5686 | 9.076596 | GCTCAAAATTTTATTATGACGAAGCTT | 57.923 | 29.630 | 0.00 | 0.00 | 0.00 | 3.74 |
1946 | 5687 | 7.702348 | GGCTCAAAATTTTATTATGACGAAGCT | 59.298 | 33.333 | 2.44 | 0.00 | 0.00 | 3.74 |
1947 | 5688 | 7.305418 | CGGCTCAAAATTTTATTATGACGAAGC | 60.305 | 37.037 | 2.44 | 0.00 | 0.00 | 3.86 |
1948 | 5689 | 7.908082 | TCGGCTCAAAATTTTATTATGACGAAG | 59.092 | 33.333 | 2.44 | 0.00 | 0.00 | 3.79 |
1949 | 5690 | 7.753659 | TCGGCTCAAAATTTTATTATGACGAA | 58.246 | 30.769 | 2.44 | 0.00 | 0.00 | 3.85 |
1950 | 5691 | 7.310072 | TCGGCTCAAAATTTTATTATGACGA | 57.690 | 32.000 | 2.44 | 8.50 | 0.00 | 4.20 |
1951 | 5692 | 9.658475 | TTATCGGCTCAAAATTTTATTATGACG | 57.342 | 29.630 | 2.44 | 6.44 | 0.00 | 4.35 |
1960 | 5701 | 9.719355 | ATTAACCTTTTATCGGCTCAAAATTTT | 57.281 | 25.926 | 0.00 | 0.00 | 0.00 | 1.82 |
1964 | 5705 | 7.971722 | GCTAATTAACCTTTTATCGGCTCAAAA | 59.028 | 33.333 | 0.00 | 0.00 | 0.00 | 2.44 |
1970 | 5711 | 8.618677 | AGTTTAGCTAATTAACCTTTTATCGGC | 58.381 | 33.333 | 7.08 | 0.00 | 0.00 | 5.54 |
1971 | 5712 | 9.931210 | CAGTTTAGCTAATTAACCTTTTATCGG | 57.069 | 33.333 | 7.08 | 0.00 | 0.00 | 4.18 |
1995 | 5740 | 7.172190 | AGTCGCCATAATGAATCTTGTTATCAG | 59.828 | 37.037 | 0.00 | 0.00 | 0.00 | 2.90 |
1998 | 5743 | 7.807977 | AAGTCGCCATAATGAATCTTGTTAT | 57.192 | 32.000 | 0.00 | 0.00 | 0.00 | 1.89 |
2002 | 5747 | 6.324819 | ACAAAAGTCGCCATAATGAATCTTG | 58.675 | 36.000 | 0.00 | 0.00 | 0.00 | 3.02 |
2003 | 5748 | 6.515272 | ACAAAAGTCGCCATAATGAATCTT | 57.485 | 33.333 | 0.00 | 0.00 | 0.00 | 2.40 |
2009 | 5754 | 5.354234 | AGGACTAACAAAAGTCGCCATAATG | 59.646 | 40.000 | 0.00 | 0.00 | 45.69 | 1.90 |
2010 | 5755 | 5.354234 | CAGGACTAACAAAAGTCGCCATAAT | 59.646 | 40.000 | 0.00 | 0.00 | 45.69 | 1.28 |
2016 | 5761 | 2.349532 | GCACAGGACTAACAAAAGTCGC | 60.350 | 50.000 | 0.00 | 0.00 | 45.69 | 5.19 |
2153 | 5902 | 0.539438 | TGATTGGTGTGGGACTTGGC | 60.539 | 55.000 | 0.00 | 0.00 | 0.00 | 4.52 |
2156 | 5905 | 2.039746 | TCGATTGATTGGTGTGGGACTT | 59.960 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.