Multiple sequence alignment - TraesCS1A01G007600

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G007600 chr1A 100.000 2325 0 0 1 2325 4049290 4046966 0.000000e+00 4294.0
1 TraesCS1A01G007600 chr1A 86.842 228 23 7 46 268 130153069 130152844 4.960000e-62 248.0
2 TraesCS1A01G007600 chr1A 85.714 245 17 5 40 268 150863599 150863357 2.310000e-60 243.0
3 TraesCS1A01G007600 chr1A 86.076 237 19 9 46 269 481274219 481273984 2.310000e-60 243.0
4 TraesCS1A01G007600 chr1B 88.707 2134 151 43 273 2325 5160568 5158444 0.000000e+00 2523.0
5 TraesCS1A01G007600 chr1D 90.325 1354 83 26 516 1860 216442 217756 0.000000e+00 1731.0
6 TraesCS1A01G007600 chr1D 89.565 345 26 7 1987 2323 217867 218209 1.650000e-116 429.0
7 TraesCS1A01G007600 chr1D 93.151 73 4 1 267 338 216147 216219 3.160000e-19 106.0
8 TraesCS1A01G007600 chr3A 87.866 239 13 5 46 269 584256189 584256426 1.370000e-67 267.0
9 TraesCS1A01G007600 chr3A 82.456 228 30 8 46 269 58888691 58888470 8.480000e-45 191.0
10 TraesCS1A01G007600 chr6D 87.448 239 13 5 46 268 255024790 255024553 2.290000e-65 259.0
11 TraesCS1A01G007600 chr6A 86.939 245 14 6 40 267 330045524 330045767 2.290000e-65 259.0
12 TraesCS1A01G007600 chr6A 86.076 237 18 7 46 268 590963848 590963613 8.300000e-60 241.0
13 TraesCS1A01G007600 chr6A 86.076 237 18 7 46 268 590989655 590989420 8.300000e-60 241.0
14 TraesCS1A01G007600 chr7A 86.134 238 15 12 46 268 730872533 730872767 8.300000e-60 241.0
15 TraesCS1A01G007600 chr7A 85.106 235 26 7 46 275 566510559 566510789 5.000000e-57 231.0
16 TraesCS1A01G007600 chr7A 93.548 155 9 1 115 269 14375278 14375431 1.800000e-56 230.0
17 TraesCS1A01G007600 chr4A 92.453 159 10 2 115 272 182121748 182121905 2.320000e-55 226.0
18 TraesCS1A01G007600 chr4A 88.889 54 5 1 3 55 617039926 617039873 5.360000e-07 65.8
19 TraesCS1A01G007600 chr2B 84.188 234 23 12 46 269 768373678 768373907 5.030000e-52 215.0
20 TraesCS1A01G007600 chr2D 82.500 240 23 7 46 269 481966502 481966738 2.360000e-45 193.0


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G007600 chr1A 4046966 4049290 2324 True 4294.000000 4294 100.000000 1 2325 1 chr1A.!!$R1 2324
1 TraesCS1A01G007600 chr1B 5158444 5160568 2124 True 2523.000000 2523 88.707000 273 2325 1 chr1B.!!$R1 2052
2 TraesCS1A01G007600 chr1D 216147 218209 2062 False 755.333333 1731 91.013667 267 2323 3 chr1D.!!$F1 2056

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
186 187 0.115152 TGGAGGTGAGGCTCTTCTCA 59.885 55.0 26.46 16.22 41.03 3.27 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1812 2014 1.004891 GGGACTGGGGGAGAAGGAT 59.995 63.158 0.0 0.0 0.0 3.24 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
26 27 7.850492 TGCAACATATTTCTATTTGATTCGTCG 59.150 33.333 0.00 0.00 0.00 5.12
27 28 7.850982 GCAACATATTTCTATTTGATTCGTCGT 59.149 33.333 0.00 0.00 0.00 4.34
28 29 9.702726 CAACATATTTCTATTTGATTCGTCGTT 57.297 29.630 0.00 0.00 0.00 3.85
30 31 9.702726 ACATATTTCTATTTGATTCGTCGTTTG 57.297 29.630 0.00 0.00 0.00 2.93
31 32 9.914923 CATATTTCTATTTGATTCGTCGTTTGA 57.085 29.630 0.00 0.00 0.00 2.69
34 35 8.483743 TTTCTATTTGATTCGTCGTTTGAAAC 57.516 30.769 0.00 0.00 0.00 2.78
35 36 7.179927 TCTATTTGATTCGTCGTTTGAAACA 57.820 32.000 8.93 0.00 0.00 2.83
36 37 7.802738 TCTATTTGATTCGTCGTTTGAAACAT 58.197 30.769 8.93 0.00 29.84 2.71
37 38 6.674005 ATTTGATTCGTCGTTTGAAACATG 57.326 33.333 8.93 0.00 29.84 3.21
38 39 5.411083 TTGATTCGTCGTTTGAAACATGA 57.589 34.783 8.93 4.01 29.84 3.07
39 40 5.411083 TGATTCGTCGTTTGAAACATGAA 57.589 34.783 8.93 11.74 0.00 2.57
40 41 5.996219 TGATTCGTCGTTTGAAACATGAAT 58.004 33.333 18.73 18.73 34.20 2.57
41 42 7.123160 TGATTCGTCGTTTGAAACATGAATA 57.877 32.000 18.71 10.63 32.97 1.75
42 43 7.747888 TGATTCGTCGTTTGAAACATGAATAT 58.252 30.769 18.71 7.51 32.97 1.28
43 44 8.233868 TGATTCGTCGTTTGAAACATGAATATT 58.766 29.630 18.71 0.00 32.97 1.28
44 45 8.964420 ATTCGTCGTTTGAAACATGAATATTT 57.036 26.923 17.91 0.00 32.02 1.40
45 46 7.774224 TCGTCGTTTGAAACATGAATATTTG 57.226 32.000 8.93 0.00 0.00 2.32
46 47 7.356540 TCGTCGTTTGAAACATGAATATTTGT 58.643 30.769 8.93 0.00 0.00 2.83
47 48 7.858382 TCGTCGTTTGAAACATGAATATTTGTT 59.142 29.630 8.93 0.54 37.66 2.83
48 49 7.938862 CGTCGTTTGAAACATGAATATTTGTTG 59.061 33.333 8.93 0.34 36.26 3.33
49 50 8.751335 GTCGTTTGAAACATGAATATTTGTTGT 58.249 29.630 8.93 0.89 36.26 3.32
50 51 9.952188 TCGTTTGAAACATGAATATTTGTTGTA 57.048 25.926 8.93 0.00 36.26 2.41
116 117 9.738832 TCTCATGTATTTTTGCATGTTATGATG 57.261 29.630 0.00 0.00 42.09 3.07
127 128 6.210396 GCATGTTATGATGCATGTTTCATG 57.790 37.500 2.46 12.91 46.77 3.07
128 129 5.980715 GCATGTTATGATGCATGTTTCATGA 59.019 36.000 21.61 9.43 46.77 3.07
129 130 6.645003 GCATGTTATGATGCATGTTTCATGAT 59.355 34.615 21.61 6.06 46.77 2.45
130 131 7.359181 GCATGTTATGATGCATGTTTCATGATG 60.359 37.037 21.61 15.65 46.77 3.07
131 132 7.336161 TGTTATGATGCATGTTTCATGATGA 57.664 32.000 2.46 0.00 34.52 2.92
132 133 7.773149 TGTTATGATGCATGTTTCATGATGAA 58.227 30.769 2.46 3.29 34.52 2.57
133 134 7.918562 TGTTATGATGCATGTTTCATGATGAAG 59.081 33.333 2.46 0.00 37.70 3.02
134 135 5.907866 TGATGCATGTTTCATGATGAAGT 57.092 34.783 2.46 0.00 37.70 3.01
135 136 5.646606 TGATGCATGTTTCATGATGAAGTG 58.353 37.500 2.46 9.71 37.70 3.16
136 137 5.416326 TGATGCATGTTTCATGATGAAGTGA 59.584 36.000 2.46 0.00 37.70 3.41
137 138 5.050644 TGCATGTTTCATGATGAAGTGAC 57.949 39.130 8.01 4.89 37.70 3.67
138 139 4.519730 TGCATGTTTCATGATGAAGTGACA 59.480 37.500 12.07 12.07 37.70 3.58
139 140 5.184287 TGCATGTTTCATGATGAAGTGACAT 59.816 36.000 14.85 14.85 36.39 3.06
140 141 5.515270 GCATGTTTCATGATGAAGTGACATG 59.485 40.000 29.41 29.41 45.99 3.21
141 142 5.050644 TGTTTCATGATGAAGTGACATGC 57.949 39.130 8.01 0.00 37.70 4.06
142 143 4.763279 TGTTTCATGATGAAGTGACATGCT 59.237 37.500 8.01 0.00 37.70 3.79
143 144 5.242171 TGTTTCATGATGAAGTGACATGCTT 59.758 36.000 8.01 0.00 37.70 3.91
144 145 4.957759 TCATGATGAAGTGACATGCTTG 57.042 40.909 0.00 0.00 40.47 4.01
145 146 3.128068 TCATGATGAAGTGACATGCTTGC 59.872 43.478 0.00 0.00 40.47 4.01
146 147 2.506444 TGATGAAGTGACATGCTTGCA 58.494 42.857 0.00 0.00 0.00 4.08
147 148 3.086282 TGATGAAGTGACATGCTTGCAT 58.914 40.909 1.81 1.81 0.00 3.96
148 149 3.119637 TGATGAAGTGACATGCTTGCATG 60.120 43.478 27.64 27.64 38.46 4.06
150 151 2.624364 TGAAGTGACATGCTTGCATGTT 59.376 40.909 32.76 21.55 44.88 2.71
151 152 2.717580 AGTGACATGCTTGCATGTTG 57.282 45.000 32.76 15.73 44.88 3.33
152 153 2.232399 AGTGACATGCTTGCATGTTGA 58.768 42.857 32.76 22.83 44.88 3.18
153 154 2.228103 AGTGACATGCTTGCATGTTGAG 59.772 45.455 32.76 13.66 44.88 3.02
154 155 2.227149 GTGACATGCTTGCATGTTGAGA 59.773 45.455 32.76 18.95 44.88 3.27
155 156 2.486592 TGACATGCTTGCATGTTGAGAG 59.513 45.455 32.76 12.43 44.88 3.20
156 157 2.745821 GACATGCTTGCATGTTGAGAGA 59.254 45.455 32.76 0.00 44.88 3.10
157 158 2.486982 ACATGCTTGCATGTTGAGAGAC 59.513 45.455 28.83 0.00 42.56 3.36
158 159 2.259266 TGCTTGCATGTTGAGAGACA 57.741 45.000 1.14 0.00 0.00 3.41
159 160 2.786777 TGCTTGCATGTTGAGAGACAT 58.213 42.857 1.14 0.00 40.76 3.06
160 161 3.941573 TGCTTGCATGTTGAGAGACATA 58.058 40.909 1.14 0.00 38.15 2.29
161 162 4.520179 TGCTTGCATGTTGAGAGACATAT 58.480 39.130 1.14 0.00 38.15 1.78
162 163 4.334481 TGCTTGCATGTTGAGAGACATATG 59.666 41.667 0.00 0.00 38.15 1.78
163 164 4.573607 GCTTGCATGTTGAGAGACATATGA 59.426 41.667 10.38 0.00 38.15 2.15
164 165 5.238868 GCTTGCATGTTGAGAGACATATGAT 59.761 40.000 10.38 0.00 38.15 2.45
165 166 6.426025 GCTTGCATGTTGAGAGACATATGATA 59.574 38.462 10.38 0.00 38.15 2.15
166 167 7.360185 GCTTGCATGTTGAGAGACATATGATAG 60.360 40.741 10.38 0.00 38.15 2.08
167 168 7.059202 TGCATGTTGAGAGACATATGATAGT 57.941 36.000 10.38 0.00 38.15 2.12
168 169 6.927381 TGCATGTTGAGAGACATATGATAGTG 59.073 38.462 10.38 0.00 38.15 2.74
169 170 6.368243 GCATGTTGAGAGACATATGATAGTGG 59.632 42.308 10.38 0.00 38.15 4.00
170 171 7.664758 CATGTTGAGAGACATATGATAGTGGA 58.335 38.462 10.38 0.00 38.15 4.02
171 172 7.282332 TGTTGAGAGACATATGATAGTGGAG 57.718 40.000 10.38 0.00 0.00 3.86
172 173 6.266330 TGTTGAGAGACATATGATAGTGGAGG 59.734 42.308 10.38 0.00 0.00 4.30
173 174 5.958321 TGAGAGACATATGATAGTGGAGGT 58.042 41.667 10.38 0.00 0.00 3.85
174 175 5.772169 TGAGAGACATATGATAGTGGAGGTG 59.228 44.000 10.38 0.00 0.00 4.00
175 176 5.958321 AGAGACATATGATAGTGGAGGTGA 58.042 41.667 10.38 0.00 0.00 4.02
176 177 6.009589 AGAGACATATGATAGTGGAGGTGAG 58.990 44.000 10.38 0.00 0.00 3.51
177 178 5.083122 AGACATATGATAGTGGAGGTGAGG 58.917 45.833 10.38 0.00 0.00 3.86
178 179 3.580458 ACATATGATAGTGGAGGTGAGGC 59.420 47.826 10.38 0.00 0.00 4.70
179 180 2.485966 ATGATAGTGGAGGTGAGGCT 57.514 50.000 0.00 0.00 0.00 4.58
180 181 1.781786 TGATAGTGGAGGTGAGGCTC 58.218 55.000 7.79 7.79 0.00 4.70
181 182 1.289231 TGATAGTGGAGGTGAGGCTCT 59.711 52.381 16.72 0.00 0.00 4.09
182 183 2.292521 TGATAGTGGAGGTGAGGCTCTT 60.293 50.000 16.72 1.03 0.00 2.85
183 184 1.853963 TAGTGGAGGTGAGGCTCTTC 58.146 55.000 16.72 10.41 0.00 2.87
184 185 0.116143 AGTGGAGGTGAGGCTCTTCT 59.884 55.000 16.72 12.54 0.00 2.85
185 186 0.534873 GTGGAGGTGAGGCTCTTCTC 59.465 60.000 16.72 19.51 0.00 2.87
186 187 0.115152 TGGAGGTGAGGCTCTTCTCA 59.885 55.000 26.46 16.22 41.03 3.27
187 188 1.273495 TGGAGGTGAGGCTCTTCTCAT 60.273 52.381 26.46 11.27 44.43 2.90
188 189 1.138661 GGAGGTGAGGCTCTTCTCATG 59.861 57.143 26.46 0.00 44.43 3.07
189 190 0.540923 AGGTGAGGCTCTTCTCATGC 59.459 55.000 16.72 0.00 44.43 4.06
190 191 0.251354 GGTGAGGCTCTTCTCATGCA 59.749 55.000 16.72 0.00 44.43 3.96
191 192 1.134159 GGTGAGGCTCTTCTCATGCAT 60.134 52.381 16.72 0.00 44.43 3.96
192 193 1.941294 GTGAGGCTCTTCTCATGCATG 59.059 52.381 21.07 21.07 44.43 4.06
193 194 1.558294 TGAGGCTCTTCTCATGCATGT 59.442 47.619 25.43 3.36 38.70 3.21
194 195 2.026542 TGAGGCTCTTCTCATGCATGTT 60.027 45.455 25.43 2.53 38.70 2.71
195 196 2.355132 GAGGCTCTTCTCATGCATGTTG 59.645 50.000 25.43 18.71 34.13 3.33
196 197 2.089980 GGCTCTTCTCATGCATGTTGT 58.910 47.619 25.43 0.00 0.00 3.32
197 198 2.159421 GGCTCTTCTCATGCATGTTGTG 60.159 50.000 25.43 14.52 0.00 3.33
207 208 2.830772 GCATGTTGTGCGTATGATGT 57.169 45.000 0.00 0.00 45.23 3.06
208 209 2.443387 GCATGTTGTGCGTATGATGTG 58.557 47.619 0.00 0.00 45.23 3.21
209 210 2.792196 GCATGTTGTGCGTATGATGTGG 60.792 50.000 0.00 0.00 45.23 4.17
210 211 0.801872 TGTTGTGCGTATGATGTGGC 59.198 50.000 0.00 0.00 0.00 5.01
211 212 0.801872 GTTGTGCGTATGATGTGGCA 59.198 50.000 0.00 0.00 0.00 4.92
212 213 1.401552 GTTGTGCGTATGATGTGGCAT 59.598 47.619 0.00 0.00 37.77 4.40
213 214 1.015868 TGTGCGTATGATGTGGCATG 58.984 50.000 0.00 0.00 37.77 4.06
214 215 0.317269 GTGCGTATGATGTGGCATGC 60.317 55.000 9.90 9.90 37.77 4.06
215 216 0.464193 TGCGTATGATGTGGCATGCT 60.464 50.000 18.92 0.00 0.00 3.79
216 217 0.664761 GCGTATGATGTGGCATGCTT 59.335 50.000 18.92 0.00 0.00 3.91
217 218 1.598676 GCGTATGATGTGGCATGCTTG 60.599 52.381 18.92 0.00 0.00 4.01
230 231 3.842732 CATGCTTGCATGTTGAGAGAA 57.157 42.857 23.00 0.00 0.00 2.87
231 232 4.168922 CATGCTTGCATGTTGAGAGAAA 57.831 40.909 23.00 0.00 0.00 2.52
232 233 4.744570 CATGCTTGCATGTTGAGAGAAAT 58.255 39.130 23.00 0.00 0.00 2.17
233 234 5.886992 CATGCTTGCATGTTGAGAGAAATA 58.113 37.500 23.00 0.00 0.00 1.40
234 235 5.556355 TGCTTGCATGTTGAGAGAAATAG 57.444 39.130 1.14 0.00 0.00 1.73
235 236 5.005740 TGCTTGCATGTTGAGAGAAATAGT 58.994 37.500 1.14 0.00 0.00 2.12
236 237 5.474532 TGCTTGCATGTTGAGAGAAATAGTT 59.525 36.000 1.14 0.00 0.00 2.24
237 238 6.654582 TGCTTGCATGTTGAGAGAAATAGTTA 59.345 34.615 1.14 0.00 0.00 2.24
238 239 7.174772 TGCTTGCATGTTGAGAGAAATAGTTAA 59.825 33.333 1.14 0.00 0.00 2.01
239 240 8.186821 GCTTGCATGTTGAGAGAAATAGTTAAT 58.813 33.333 1.14 0.00 0.00 1.40
240 241 9.499585 CTTGCATGTTGAGAGAAATAGTTAATG 57.500 33.333 0.00 0.00 0.00 1.90
241 242 7.988737 TGCATGTTGAGAGAAATAGTTAATGG 58.011 34.615 0.00 0.00 0.00 3.16
242 243 7.067372 TGCATGTTGAGAGAAATAGTTAATGGG 59.933 37.037 0.00 0.00 0.00 4.00
243 244 7.469181 GCATGTTGAGAGAAATAGTTAATGGGG 60.469 40.741 0.00 0.00 0.00 4.96
244 245 6.423182 TGTTGAGAGAAATAGTTAATGGGGG 58.577 40.000 0.00 0.00 0.00 5.40
245 246 5.048846 TGAGAGAAATAGTTAATGGGGGC 57.951 43.478 0.00 0.00 0.00 5.80
246 247 4.726825 TGAGAGAAATAGTTAATGGGGGCT 59.273 41.667 0.00 0.00 0.00 5.19
247 248 5.908831 TGAGAGAAATAGTTAATGGGGGCTA 59.091 40.000 0.00 0.00 0.00 3.93
248 249 6.043243 TGAGAGAAATAGTTAATGGGGGCTAG 59.957 42.308 0.00 0.00 0.00 3.42
249 250 4.986783 AGAAATAGTTAATGGGGGCTAGC 58.013 43.478 6.04 6.04 0.00 3.42
250 251 4.665483 AGAAATAGTTAATGGGGGCTAGCT 59.335 41.667 15.72 0.00 0.00 3.32
251 252 5.850028 AGAAATAGTTAATGGGGGCTAGCTA 59.150 40.000 15.72 0.00 0.00 3.32
252 253 6.505700 AGAAATAGTTAATGGGGGCTAGCTAT 59.494 38.462 15.72 1.73 0.00 2.97
253 254 6.720217 AATAGTTAATGGGGGCTAGCTATT 57.280 37.500 15.72 12.29 30.90 1.73
254 255 6.720217 ATAGTTAATGGGGGCTAGCTATTT 57.280 37.500 15.72 4.64 0.00 1.40
255 256 7.824365 ATAGTTAATGGGGGCTAGCTATTTA 57.176 36.000 15.72 3.71 0.00 1.40
256 257 6.128138 AGTTAATGGGGGCTAGCTATTTAG 57.872 41.667 15.72 0.00 0.00 1.85
257 258 5.850028 AGTTAATGGGGGCTAGCTATTTAGA 59.150 40.000 15.72 0.00 0.00 2.10
258 259 6.505700 AGTTAATGGGGGCTAGCTATTTAGAT 59.494 38.462 15.72 0.00 0.00 1.98
259 260 7.682890 AGTTAATGGGGGCTAGCTATTTAGATA 59.317 37.037 15.72 0.00 0.00 1.98
260 261 8.495260 GTTAATGGGGGCTAGCTATTTAGATAT 58.505 37.037 15.72 0.00 0.00 1.63
261 262 9.738277 TTAATGGGGGCTAGCTATTTAGATATA 57.262 33.333 15.72 0.00 0.00 0.86
262 263 7.863901 ATGGGGGCTAGCTATTTAGATATAG 57.136 40.000 15.72 0.00 0.00 1.31
263 264 6.993408 TGGGGGCTAGCTATTTAGATATAGA 58.007 40.000 15.72 0.00 31.10 1.98
264 265 7.427501 TGGGGGCTAGCTATTTAGATATAGAA 58.572 38.462 15.72 0.00 31.10 2.10
265 266 7.565398 TGGGGGCTAGCTATTTAGATATAGAAG 59.435 40.741 15.72 0.00 31.10 2.85
327 329 4.876125 TCAATCTAGATTGCATCGGAGTC 58.124 43.478 32.11 0.00 45.77 3.36
358 461 5.636543 ACTAGTTTGTACGCATAAACCAGAC 59.363 40.000 9.69 0.00 36.66 3.51
389 492 5.858581 GCCTTGCATTGAACTAAGTTTGTAG 59.141 40.000 0.00 0.00 0.00 2.74
407 510 2.256117 AGTCTTGTGTGGCCTGTAAC 57.744 50.000 3.32 0.00 0.00 2.50
424 527 6.534079 GCCTGTAACGATACACAAGACTTTAT 59.466 38.462 0.81 0.00 37.11 1.40
431 534 9.784680 AACGATACACAAGACTTTATAGTACAG 57.215 33.333 0.00 0.00 33.84 2.74
443 546 6.868864 ACTTTATAGTACAGTGTGACTTGCAG 59.131 38.462 5.88 0.00 31.21 4.41
448 551 2.283298 ACAGTGTGACTTGCAGAAGTG 58.717 47.619 0.00 0.00 42.80 3.16
463 566 3.945921 CAGAAGTGGAGCATGACATGATT 59.054 43.478 19.76 6.11 0.00 2.57
464 567 4.035324 CAGAAGTGGAGCATGACATGATTC 59.965 45.833 19.76 12.50 0.00 2.52
465 568 3.639672 AGTGGAGCATGACATGATTCA 57.360 42.857 19.76 15.26 30.33 2.57
466 569 4.166246 AGTGGAGCATGACATGATTCAT 57.834 40.909 17.37 4.80 36.43 2.57
467 570 4.135306 AGTGGAGCATGACATGATTCATC 58.865 43.478 17.37 11.12 36.43 2.92
468 571 3.881089 GTGGAGCATGACATGATTCATCA 59.119 43.478 17.37 6.86 36.43 3.07
469 572 4.337274 GTGGAGCATGACATGATTCATCAA 59.663 41.667 17.37 0.00 36.43 2.57
470 573 4.951094 TGGAGCATGACATGATTCATCAAA 59.049 37.500 19.76 0.00 40.69 2.69
471 574 5.596772 TGGAGCATGACATGATTCATCAAAT 59.403 36.000 19.76 0.00 40.69 2.32
472 575 6.097696 TGGAGCATGACATGATTCATCAAATT 59.902 34.615 19.76 0.00 40.69 1.82
473 576 6.641314 GGAGCATGACATGATTCATCAAATTC 59.359 38.462 19.76 0.00 40.69 2.17
474 577 6.513180 AGCATGACATGATTCATCAAATTCC 58.487 36.000 19.76 0.00 40.69 3.01
475 578 5.694910 GCATGACATGATTCATCAAATTCCC 59.305 40.000 19.76 0.00 40.69 3.97
476 579 6.462487 GCATGACATGATTCATCAAATTCCCT 60.462 38.462 19.76 0.00 40.69 4.20
477 580 7.497595 CATGACATGATTCATCAAATTCCCTT 58.502 34.615 10.03 0.00 40.69 3.95
478 581 7.484993 TGACATGATTCATCAAATTCCCTTT 57.515 32.000 0.00 0.00 40.69 3.11
479 582 8.592529 TGACATGATTCATCAAATTCCCTTTA 57.407 30.769 0.00 0.00 40.69 1.85
480 583 8.469200 TGACATGATTCATCAAATTCCCTTTAC 58.531 33.333 0.00 0.00 40.69 2.01
481 584 8.365060 ACATGATTCATCAAATTCCCTTTACA 57.635 30.769 0.00 0.00 40.69 2.41
482 585 8.984855 ACATGATTCATCAAATTCCCTTTACAT 58.015 29.630 0.00 0.00 40.69 2.29
483 586 9.256477 CATGATTCATCAAATTCCCTTTACATG 57.744 33.333 0.00 0.00 40.69 3.21
484 587 8.365060 TGATTCATCAAATTCCCTTTACATGT 57.635 30.769 2.69 2.69 33.08 3.21
485 588 8.469200 TGATTCATCAAATTCCCTTTACATGTC 58.531 33.333 0.00 0.00 33.08 3.06
486 589 7.773489 TTCATCAAATTCCCTTTACATGTCA 57.227 32.000 0.00 0.00 0.00 3.58
487 590 7.773489 TCATCAAATTCCCTTTACATGTCAA 57.227 32.000 0.00 0.00 0.00 3.18
488 591 8.187913 TCATCAAATTCCCTTTACATGTCAAA 57.812 30.769 0.00 1.08 0.00 2.69
489 592 8.306038 TCATCAAATTCCCTTTACATGTCAAAG 58.694 33.333 0.00 10.66 33.62 2.77
497 600 6.325919 CCTTTACATGTCAAAGGCTTTACA 57.674 37.500 22.65 16.25 44.05 2.41
498 601 6.381801 CCTTTACATGTCAAAGGCTTTACAG 58.618 40.000 22.65 12.30 44.05 2.74
499 602 6.016276 CCTTTACATGTCAAAGGCTTTACAGT 60.016 38.462 22.65 16.07 44.05 3.55
500 603 7.174253 CCTTTACATGTCAAAGGCTTTACAGTA 59.826 37.037 22.65 15.33 44.05 2.74
501 604 5.941948 ACATGTCAAAGGCTTTACAGTAC 57.058 39.130 12.95 6.86 0.00 2.73
502 605 5.373222 ACATGTCAAAGGCTTTACAGTACA 58.627 37.500 12.95 11.85 0.00 2.90
503 606 5.238650 ACATGTCAAAGGCTTTACAGTACAC 59.761 40.000 12.95 2.11 0.00 2.90
504 607 4.771903 TGTCAAAGGCTTTACAGTACACA 58.228 39.130 12.95 4.51 0.00 3.72
505 608 5.373222 TGTCAAAGGCTTTACAGTACACAT 58.627 37.500 12.95 0.00 0.00 3.21
506 609 5.238432 TGTCAAAGGCTTTACAGTACACATG 59.762 40.000 12.95 0.00 0.00 3.21
507 610 5.238650 GTCAAAGGCTTTACAGTACACATGT 59.761 40.000 12.95 0.00 34.62 3.21
508 611 5.238432 TCAAAGGCTTTACAGTACACATGTG 59.762 40.000 24.25 24.25 32.02 3.21
509 612 4.617253 AGGCTTTACAGTACACATGTGA 57.383 40.909 31.94 12.93 32.02 3.58
510 613 4.968259 AGGCTTTACAGTACACATGTGAA 58.032 39.130 31.94 11.88 32.02 3.18
511 614 4.997395 AGGCTTTACAGTACACATGTGAAG 59.003 41.667 31.94 21.56 43.43 3.02
514 617 6.545504 CTTTACAGTACACATGTGAAGCTT 57.454 37.500 31.94 11.88 37.42 3.74
515 618 6.935741 TTTACAGTACACATGTGAAGCTTT 57.064 33.333 31.94 18.97 32.02 3.51
516 619 4.818534 ACAGTACACATGTGAAGCTTTG 57.181 40.909 31.94 19.97 0.00 2.77
517 620 4.450976 ACAGTACACATGTGAAGCTTTGA 58.549 39.130 31.94 3.95 0.00 2.69
563 721 3.495377 ACTAAGTTTGTATTGTTGCGCGA 59.505 39.130 12.10 0.00 0.00 5.87
587 745 6.879276 ATCATTCAGATAATCAGCAGGTTG 57.121 37.500 0.00 0.00 34.43 3.77
590 748 4.558226 TCAGATAATCAGCAGGTTGTGT 57.442 40.909 0.00 0.00 0.00 3.72
600 758 4.099266 TCAGCAGGTTGTGTTTGCTAAATT 59.901 37.500 0.00 0.00 45.75 1.82
601 759 4.810491 CAGCAGGTTGTGTTTGCTAAATTT 59.190 37.500 0.00 0.00 45.75 1.82
618 776 6.088616 GCTAAATTTTGCTCATGACAAGTGTC 59.911 38.462 15.99 4.43 44.97 3.67
627 785 3.980583 GACAAGTGTCGGAACTGGA 57.019 52.632 0.00 0.00 35.12 3.86
633 791 0.521735 GTGTCGGAACTGGAATTGCC 59.478 55.000 0.00 0.00 37.10 4.52
679 837 3.258872 TGGCATAATTTGTTTGCAGCTCT 59.741 39.130 0.00 0.00 38.12 4.09
681 839 4.328169 GGCATAATTTGTTTGCAGCTCTTC 59.672 41.667 0.00 0.00 38.12 2.87
697 859 4.018960 AGCTCTTCAGGGAAATTTAGCAGA 60.019 41.667 7.77 0.00 0.00 4.26
705 867 7.535139 TCAGGGAAATTTAGCAGATAAAAACG 58.465 34.615 0.00 0.00 36.94 3.60
773 936 5.614308 TCACAAGGCATTATCTACCATGAG 58.386 41.667 0.00 0.00 0.00 2.90
793 957 4.229876 GAGCAATGCTACAAAACAGGTTC 58.770 43.478 8.12 0.00 39.88 3.62
830 994 6.147821 CACATTCTTATTCCAGTCGAACAGTT 59.852 38.462 0.00 0.00 31.79 3.16
861 1026 4.551388 CCGTATGCCTCAGAGTAGAAATC 58.449 47.826 0.00 0.00 0.00 2.17
863 1028 5.457140 CGTATGCCTCAGAGTAGAAATCTC 58.543 45.833 0.00 0.00 0.00 2.75
865 1030 3.621558 TGCCTCAGAGTAGAAATCTCGA 58.378 45.455 0.00 0.00 37.07 4.04
877 1042 5.461032 AGAAATCTCGAGTTCAACTCAGT 57.539 39.130 17.81 0.00 45.30 3.41
894 1059 3.418995 TCAGTGCGGTCTCTAACTACTT 58.581 45.455 0.00 0.00 0.00 2.24
905 1070 6.208994 GGTCTCTAACTACTTGGAGAAAGACA 59.791 42.308 0.00 0.00 43.48 3.41
906 1071 7.255871 GGTCTCTAACTACTTGGAGAAAGACAA 60.256 40.741 0.00 0.00 43.48 3.18
929 1094 4.887071 AGTAACAAGTCCACAGCAAAATCA 59.113 37.500 0.00 0.00 0.00 2.57
953 1118 1.202568 TGCGCAGATGGAAGGTGATAG 60.203 52.381 5.66 0.00 0.00 2.08
1035 1200 2.567049 GGACGGTCACCTCTGTCG 59.433 66.667 10.76 0.00 42.63 4.35
1041 1206 0.609681 GGTCACCTCTGTCGGTCTCT 60.610 60.000 0.00 0.00 34.29 3.10
1044 1209 1.004862 TCACCTCTGTCGGTCTCTGAT 59.995 52.381 0.00 0.00 34.29 2.90
1137 1302 1.160137 GTGTCTGCAAGCAAGGTAGG 58.840 55.000 0.00 0.00 0.00 3.18
1175 1344 7.832187 TCGGGGATTTATATGAACTTCAAACTT 59.168 33.333 0.00 0.00 0.00 2.66
1230 1417 4.402793 GGACTGACTGATAGCAGGAAGTAA 59.597 45.833 13.45 0.00 46.60 2.24
1294 1481 0.605319 TGGTGTTCGGTCCAGCATTC 60.605 55.000 0.00 0.00 35.56 2.67
1384 1571 8.687292 AGCATATAATCTGAAGCAAAGATTGA 57.313 30.769 15.09 6.78 42.82 2.57
1385 1572 8.784994 AGCATATAATCTGAAGCAAAGATTGAG 58.215 33.333 15.09 6.63 42.82 3.02
1389 1576 5.876612 ATCTGAAGCAAAGATTGAGTGAC 57.123 39.130 0.00 0.00 29.94 3.67
1391 1578 5.125356 TCTGAAGCAAAGATTGAGTGACAA 58.875 37.500 0.00 0.00 42.95 3.18
1473 1664 2.426431 TCCCTCCAGTACCCTGAAAA 57.574 50.000 0.00 0.00 41.50 2.29
1474 1665 2.708759 TCCCTCCAGTACCCTGAAAAA 58.291 47.619 0.00 0.00 41.50 1.94
1514 1708 0.248289 ATGCCATTGTTGGAAGCTGC 59.752 50.000 0.00 0.00 46.92 5.25
1538 1732 6.759827 GCATGTTTCATTTTAGGCAATCTGAT 59.240 34.615 0.00 0.00 0.00 2.90
1596 1791 6.931838 AGATCAAAATGCAGATGAAACACAT 58.068 32.000 0.00 0.00 42.47 3.21
1617 1813 8.953313 ACACATAATCATGTATGCCTCAATATG 58.047 33.333 3.80 0.00 43.73 1.78
1660 1856 5.048083 GCAATCACCTTGAATTCTTACCACA 60.048 40.000 7.05 0.00 36.97 4.17
1672 1868 0.840617 TTACCACAAGGCCACTGACA 59.159 50.000 5.01 0.00 39.06 3.58
1770 1967 4.266029 CAGCACGATAACAAATTGAATGCC 59.734 41.667 0.00 0.00 0.00 4.40
1799 1996 4.461781 ACGAGCAAAGCTAGTAGTAAAGGA 59.538 41.667 2.91 0.00 42.25 3.36
1801 1998 6.043411 CGAGCAAAGCTAGTAGTAAAGGATT 58.957 40.000 0.00 0.00 39.88 3.01
1881 2083 6.813649 CAGCACAGAGTACTCAAATAGCTAAA 59.186 38.462 24.44 0.00 0.00 1.85
1883 2085 6.814146 GCACAGAGTACTCAAATAGCTAAACT 59.186 38.462 24.44 0.00 0.00 2.66
1908 2110 9.323985 CTATACAATTCAGAAGAAAAGGAGAGG 57.676 37.037 0.00 0.00 37.29 3.69
1910 2112 6.605119 ACAATTCAGAAGAAAAGGAGAGGAA 58.395 36.000 0.00 0.00 37.29 3.36
1911 2113 6.714356 ACAATTCAGAAGAAAAGGAGAGGAAG 59.286 38.462 0.00 0.00 37.29 3.46
1913 2115 6.500589 TTCAGAAGAAAAGGAGAGGAAGAA 57.499 37.500 0.00 0.00 0.00 2.52
1935 2137 9.502091 AAGAACTAGCATAACTATCAACAAACA 57.498 29.630 0.00 0.00 0.00 2.83
1955 2157 2.066262 AGAAACAGGTACATTCGTGCG 58.934 47.619 0.00 0.00 0.00 5.34
1959 2161 1.796459 ACAGGTACATTCGTGCGAAAC 59.204 47.619 11.09 5.27 37.69 2.78
1982 2184 4.622313 CGATTACGTGCAAAACAGGTAGTA 59.378 41.667 0.00 0.00 46.95 1.82
1985 2187 2.867975 ACGTGCAAAACAGGTAGTACAC 59.132 45.455 2.06 0.00 45.27 2.90
1993 2234 6.704937 GCAAAACAGGTAGTACACTCTTTAGT 59.295 38.462 2.06 0.00 35.91 2.24
2025 2267 2.975851 GCAATCGCAATACAGCATAAGC 59.024 45.455 0.00 0.00 38.62 3.09
2052 2294 5.451908 CACGTGCAACAAACAAGAATAGAT 58.548 37.500 0.82 0.00 35.74 1.98
2066 2308 7.042335 ACAAGAATAGATGAAGGTAGGAAACG 58.958 38.462 0.00 0.00 0.00 3.60
2093 2335 0.110486 TGCCCTTGTCAAAGTCTCCC 59.890 55.000 0.00 0.00 0.00 4.30
2207 2454 6.105333 GTCATATACCTCATCAGAGCAATCC 58.895 44.000 0.00 0.00 40.68 3.01
2229 2476 6.889198 TCCTTTACAGATGGGATAACAGAAG 58.111 40.000 0.00 0.00 0.00 2.85
2239 2486 2.505819 GGATAACAGAAGAGGGCTCCAA 59.494 50.000 0.00 0.00 0.00 3.53
2245 2492 0.980423 GAAGAGGGCTCCAACAGTCT 59.020 55.000 0.00 0.00 0.00 3.24
2293 2540 0.547075 TCTCAACGGTTTGGGGAACA 59.453 50.000 0.00 0.00 40.13 3.18
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 7.850492 CGACGAATCAAATAGAAATATGTTGCA 59.150 33.333 0.00 0.00 0.00 4.08
1 2 7.850982 ACGACGAATCAAATAGAAATATGTTGC 59.149 33.333 0.00 0.00 0.00 4.17
2 3 9.702726 AACGACGAATCAAATAGAAATATGTTG 57.297 29.630 0.00 0.00 0.00 3.33
4 5 9.702726 CAAACGACGAATCAAATAGAAATATGT 57.297 29.630 0.00 0.00 0.00 2.29
5 6 9.914923 TCAAACGACGAATCAAATAGAAATATG 57.085 29.630 0.00 0.00 0.00 1.78
8 9 9.113876 GTTTCAAACGACGAATCAAATAGAAAT 57.886 29.630 0.00 0.00 0.00 2.17
9 10 8.123575 TGTTTCAAACGACGAATCAAATAGAAA 58.876 29.630 0.00 0.00 0.00 2.52
10 11 7.631822 TGTTTCAAACGACGAATCAAATAGAA 58.368 30.769 0.00 0.00 0.00 2.10
11 12 7.179927 TGTTTCAAACGACGAATCAAATAGA 57.820 32.000 0.00 0.00 0.00 1.98
12 13 7.744276 TCATGTTTCAAACGACGAATCAAATAG 59.256 33.333 0.00 0.00 0.00 1.73
13 14 7.577107 TCATGTTTCAAACGACGAATCAAATA 58.423 30.769 0.00 0.00 0.00 1.40
14 15 6.434596 TCATGTTTCAAACGACGAATCAAAT 58.565 32.000 0.00 0.00 0.00 2.32
15 16 5.811588 TCATGTTTCAAACGACGAATCAAA 58.188 33.333 0.00 0.00 0.00 2.69
16 17 5.411083 TCATGTTTCAAACGACGAATCAA 57.589 34.783 0.00 0.00 0.00 2.57
17 18 5.411083 TTCATGTTTCAAACGACGAATCA 57.589 34.783 0.00 0.00 0.00 2.57
18 19 8.601243 AATATTCATGTTTCAAACGACGAATC 57.399 30.769 12.43 0.00 32.23 2.52
19 20 8.849490 CAAATATTCATGTTTCAAACGACGAAT 58.151 29.630 0.00 13.22 33.54 3.34
20 21 7.858382 ACAAATATTCATGTTTCAAACGACGAA 59.142 29.630 0.00 0.00 0.00 3.85
21 22 7.356540 ACAAATATTCATGTTTCAAACGACGA 58.643 30.769 0.00 0.00 0.00 4.20
22 23 7.547285 ACAAATATTCATGTTTCAAACGACG 57.453 32.000 0.00 0.00 0.00 5.12
23 24 8.751335 ACAACAAATATTCATGTTTCAAACGAC 58.249 29.630 3.28 0.00 37.66 4.34
24 25 8.864069 ACAACAAATATTCATGTTTCAAACGA 57.136 26.923 3.28 0.00 37.66 3.85
90 91 9.738832 CATCATAACATGCAAAAATACATGAGA 57.261 29.630 9.77 3.28 45.23 3.27
104 105 5.980715 TCATGAAACATGCATCATAACATGC 59.019 36.000 17.75 0.00 46.08 4.06
106 107 7.947282 TCATCATGAAACATGCATCATAACAT 58.053 30.769 12.10 0.00 34.61 2.71
107 108 7.336161 TCATCATGAAACATGCATCATAACA 57.664 32.000 12.10 0.00 34.61 2.41
108 109 7.919091 ACTTCATCATGAAACATGCATCATAAC 59.081 33.333 12.10 0.00 35.73 1.89
109 110 7.918562 CACTTCATCATGAAACATGCATCATAA 59.081 33.333 12.10 0.90 35.73 1.90
110 111 7.283580 TCACTTCATCATGAAACATGCATCATA 59.716 33.333 12.10 4.21 35.73 2.15
111 112 6.096282 TCACTTCATCATGAAACATGCATCAT 59.904 34.615 0.00 7.76 35.73 2.45
112 113 5.416326 TCACTTCATCATGAAACATGCATCA 59.584 36.000 0.00 3.75 35.73 3.07
113 114 5.742453 GTCACTTCATCATGAAACATGCATC 59.258 40.000 0.00 0.00 35.73 3.91
114 115 5.184287 TGTCACTTCATCATGAAACATGCAT 59.816 36.000 0.00 0.00 35.73 3.96
115 116 4.519730 TGTCACTTCATCATGAAACATGCA 59.480 37.500 0.00 0.00 35.73 3.96
116 117 5.050644 TGTCACTTCATCATGAAACATGC 57.949 39.130 0.00 0.00 35.73 4.06
117 118 5.515270 GCATGTCACTTCATCATGAAACATG 59.485 40.000 26.22 26.22 45.99 3.21
118 119 5.417894 AGCATGTCACTTCATCATGAAACAT 59.582 36.000 9.51 9.51 40.64 2.71
119 120 4.763279 AGCATGTCACTTCATCATGAAACA 59.237 37.500 0.00 5.96 40.64 2.83
120 121 5.306532 AGCATGTCACTTCATCATGAAAC 57.693 39.130 0.00 0.00 40.64 2.78
121 122 5.705902 CAAGCATGTCACTTCATCATGAAA 58.294 37.500 0.00 0.00 40.64 2.69
122 123 4.380128 GCAAGCATGTCACTTCATCATGAA 60.380 41.667 0.00 0.00 40.64 2.57
123 124 3.128068 GCAAGCATGTCACTTCATCATGA 59.872 43.478 0.00 0.00 40.64 3.07
124 125 3.119637 TGCAAGCATGTCACTTCATCATG 60.120 43.478 0.00 0.00 40.98 3.07
125 126 3.086282 TGCAAGCATGTCACTTCATCAT 58.914 40.909 0.00 0.00 0.00 2.45
126 127 2.506444 TGCAAGCATGTCACTTCATCA 58.494 42.857 0.00 0.00 0.00 3.07
127 128 3.435566 CATGCAAGCATGTCACTTCATC 58.564 45.455 23.25 0.00 46.20 2.92
128 129 3.503827 CATGCAAGCATGTCACTTCAT 57.496 42.857 23.25 0.00 46.20 2.57
138 139 2.786777 TGTCTCTCAACATGCAAGCAT 58.213 42.857 0.86 0.86 37.08 3.79
139 140 2.259266 TGTCTCTCAACATGCAAGCA 57.741 45.000 0.00 0.00 0.00 3.91
140 141 4.573607 TCATATGTCTCTCAACATGCAAGC 59.426 41.667 1.90 0.00 40.08 4.01
141 142 6.862711 ATCATATGTCTCTCAACATGCAAG 57.137 37.500 1.90 0.00 40.08 4.01
142 143 7.440255 CACTATCATATGTCTCTCAACATGCAA 59.560 37.037 1.90 0.00 40.08 4.08
143 144 6.927381 CACTATCATATGTCTCTCAACATGCA 59.073 38.462 1.90 0.00 40.08 3.96
144 145 6.368243 CCACTATCATATGTCTCTCAACATGC 59.632 42.308 1.90 0.00 40.08 4.06
145 146 7.664758 TCCACTATCATATGTCTCTCAACATG 58.335 38.462 1.90 0.00 40.08 3.21
146 147 7.039152 CCTCCACTATCATATGTCTCTCAACAT 60.039 40.741 1.90 0.00 42.41 2.71
147 148 6.266330 CCTCCACTATCATATGTCTCTCAACA 59.734 42.308 1.90 0.00 0.00 3.33
148 149 6.266558 ACCTCCACTATCATATGTCTCTCAAC 59.733 42.308 1.90 0.00 0.00 3.18
149 150 6.266330 CACCTCCACTATCATATGTCTCTCAA 59.734 42.308 1.90 0.00 0.00 3.02
150 151 5.772169 CACCTCCACTATCATATGTCTCTCA 59.228 44.000 1.90 0.00 0.00 3.27
151 152 6.007076 TCACCTCCACTATCATATGTCTCTC 58.993 44.000 1.90 0.00 0.00 3.20
152 153 5.958321 TCACCTCCACTATCATATGTCTCT 58.042 41.667 1.90 0.00 0.00 3.10
153 154 5.184864 CCTCACCTCCACTATCATATGTCTC 59.815 48.000 1.90 0.00 0.00 3.36
154 155 5.083122 CCTCACCTCCACTATCATATGTCT 58.917 45.833 1.90 0.00 0.00 3.41
155 156 4.322349 GCCTCACCTCCACTATCATATGTC 60.322 50.000 1.90 0.00 0.00 3.06
156 157 3.580458 GCCTCACCTCCACTATCATATGT 59.420 47.826 1.90 0.00 0.00 2.29
157 158 3.837146 AGCCTCACCTCCACTATCATATG 59.163 47.826 0.00 0.00 0.00 1.78
158 159 4.093011 GAGCCTCACCTCCACTATCATAT 58.907 47.826 0.00 0.00 0.00 1.78
159 160 3.141083 AGAGCCTCACCTCCACTATCATA 59.859 47.826 0.00 0.00 32.17 2.15
160 161 2.090831 AGAGCCTCACCTCCACTATCAT 60.091 50.000 0.00 0.00 32.17 2.45
161 162 1.289231 AGAGCCTCACCTCCACTATCA 59.711 52.381 0.00 0.00 32.17 2.15
162 163 2.080654 AGAGCCTCACCTCCACTATC 57.919 55.000 0.00 0.00 32.17 2.08
163 164 2.023501 AGAAGAGCCTCACCTCCACTAT 60.024 50.000 0.00 0.00 32.17 2.12
164 165 1.359474 AGAAGAGCCTCACCTCCACTA 59.641 52.381 0.00 0.00 32.17 2.74
165 166 0.116143 AGAAGAGCCTCACCTCCACT 59.884 55.000 0.00 0.00 32.17 4.00
166 167 0.534873 GAGAAGAGCCTCACCTCCAC 59.465 60.000 0.00 0.00 33.50 4.02
167 168 0.115152 TGAGAAGAGCCTCACCTCCA 59.885 55.000 9.80 0.00 38.18 3.86
168 169 1.138661 CATGAGAAGAGCCTCACCTCC 59.861 57.143 9.80 0.00 44.93 4.30
169 170 1.473080 GCATGAGAAGAGCCTCACCTC 60.473 57.143 0.00 0.44 44.93 3.85
170 171 0.540923 GCATGAGAAGAGCCTCACCT 59.459 55.000 0.00 0.00 44.93 4.00
171 172 0.251354 TGCATGAGAAGAGCCTCACC 59.749 55.000 0.00 0.00 44.93 4.02
172 173 1.941294 CATGCATGAGAAGAGCCTCAC 59.059 52.381 22.59 0.00 44.93 3.51
173 174 1.558294 ACATGCATGAGAAGAGCCTCA 59.442 47.619 32.75 0.00 46.02 3.86
174 175 2.328819 ACATGCATGAGAAGAGCCTC 57.671 50.000 32.75 0.00 0.00 4.70
175 176 2.290768 ACAACATGCATGAGAAGAGCCT 60.291 45.455 32.75 4.13 0.00 4.58
176 177 2.089980 ACAACATGCATGAGAAGAGCC 58.910 47.619 32.75 0.00 0.00 4.70
177 178 3.132629 CACAACATGCATGAGAAGAGC 57.867 47.619 32.75 0.00 0.00 4.09
189 190 2.792196 GCCACATCATACGCACAACATG 60.792 50.000 0.00 0.00 0.00 3.21
190 191 1.401552 GCCACATCATACGCACAACAT 59.598 47.619 0.00 0.00 0.00 2.71
191 192 0.801872 GCCACATCATACGCACAACA 59.198 50.000 0.00 0.00 0.00 3.33
192 193 0.801872 TGCCACATCATACGCACAAC 59.198 50.000 0.00 0.00 0.00 3.32
193 194 1.401199 CATGCCACATCATACGCACAA 59.599 47.619 0.00 0.00 33.31 3.33
194 195 1.015868 CATGCCACATCATACGCACA 58.984 50.000 0.00 0.00 33.31 4.57
195 196 0.317269 GCATGCCACATCATACGCAC 60.317 55.000 6.36 0.00 33.31 5.34
196 197 0.464193 AGCATGCCACATCATACGCA 60.464 50.000 15.66 0.00 35.35 5.24
197 198 0.664761 AAGCATGCCACATCATACGC 59.335 50.000 15.66 0.00 0.00 4.42
198 199 2.394545 CAAGCATGCCACATCATACG 57.605 50.000 15.66 0.00 0.00 3.06
211 212 5.651139 ACTATTTCTCTCAACATGCAAGCAT 59.349 36.000 0.86 0.86 37.08 3.79
212 213 5.005740 ACTATTTCTCTCAACATGCAAGCA 58.994 37.500 0.00 0.00 0.00 3.91
213 214 5.557891 ACTATTTCTCTCAACATGCAAGC 57.442 39.130 0.00 0.00 0.00 4.01
214 215 9.499585 CATTAACTATTTCTCTCAACATGCAAG 57.500 33.333 0.00 0.00 0.00 4.01
215 216 8.461222 CCATTAACTATTTCTCTCAACATGCAA 58.539 33.333 0.00 0.00 0.00 4.08
216 217 7.067372 CCCATTAACTATTTCTCTCAACATGCA 59.933 37.037 0.00 0.00 0.00 3.96
217 218 7.420800 CCCATTAACTATTTCTCTCAACATGC 58.579 38.462 0.00 0.00 0.00 4.06
218 219 7.013655 CCCCCATTAACTATTTCTCTCAACATG 59.986 40.741 0.00 0.00 0.00 3.21
219 220 7.062957 CCCCCATTAACTATTTCTCTCAACAT 58.937 38.462 0.00 0.00 0.00 2.71
220 221 6.423182 CCCCCATTAACTATTTCTCTCAACA 58.577 40.000 0.00 0.00 0.00 3.33
221 222 5.299531 GCCCCCATTAACTATTTCTCTCAAC 59.700 44.000 0.00 0.00 0.00 3.18
222 223 5.193728 AGCCCCCATTAACTATTTCTCTCAA 59.806 40.000 0.00 0.00 0.00 3.02
223 224 4.726825 AGCCCCCATTAACTATTTCTCTCA 59.273 41.667 0.00 0.00 0.00 3.27
224 225 5.311844 AGCCCCCATTAACTATTTCTCTC 57.688 43.478 0.00 0.00 0.00 3.20
225 226 5.221945 GCTAGCCCCCATTAACTATTTCTCT 60.222 44.000 2.29 0.00 0.00 3.10
226 227 5.004448 GCTAGCCCCCATTAACTATTTCTC 58.996 45.833 2.29 0.00 0.00 2.87
227 228 4.665483 AGCTAGCCCCCATTAACTATTTCT 59.335 41.667 12.13 0.00 0.00 2.52
228 229 4.986783 AGCTAGCCCCCATTAACTATTTC 58.013 43.478 12.13 0.00 0.00 2.17
229 230 6.720217 ATAGCTAGCCCCCATTAACTATTT 57.280 37.500 12.13 0.00 0.00 1.40
230 231 6.720217 AATAGCTAGCCCCCATTAACTATT 57.280 37.500 12.13 2.01 0.00 1.73
231 232 6.720217 AAATAGCTAGCCCCCATTAACTAT 57.280 37.500 12.13 0.00 0.00 2.12
232 233 7.020629 TCTAAATAGCTAGCCCCCATTAACTA 58.979 38.462 12.13 0.00 0.00 2.24
233 234 5.850028 TCTAAATAGCTAGCCCCCATTAACT 59.150 40.000 12.13 0.00 0.00 2.24
234 235 6.123045 TCTAAATAGCTAGCCCCCATTAAC 57.877 41.667 12.13 0.00 0.00 2.01
235 236 6.970165 ATCTAAATAGCTAGCCCCCATTAA 57.030 37.500 12.13 0.00 0.00 1.40
236 237 9.381038 CTATATCTAAATAGCTAGCCCCCATTA 57.619 37.037 12.13 3.75 0.00 1.90
237 238 8.074363 TCTATATCTAAATAGCTAGCCCCCATT 58.926 37.037 12.13 3.43 30.79 3.16
238 239 7.605651 TCTATATCTAAATAGCTAGCCCCCAT 58.394 38.462 12.13 0.00 30.79 4.00
239 240 6.993408 TCTATATCTAAATAGCTAGCCCCCA 58.007 40.000 12.13 0.00 30.79 4.96
240 241 7.785506 TCTTCTATATCTAAATAGCTAGCCCCC 59.214 40.741 12.13 0.00 30.79 5.40
241 242 8.770010 TCTTCTATATCTAAATAGCTAGCCCC 57.230 38.462 12.13 0.00 30.79 5.80
255 256 9.887629 CATGAGTTATGCCAATCTTCTATATCT 57.112 33.333 0.00 0.00 0.00 1.98
256 257 9.664332 ACATGAGTTATGCCAATCTTCTATATC 57.336 33.333 0.00 0.00 40.59 1.63
327 329 7.576750 TTATGCGTACAAACTAGTTTCAGAG 57.423 36.000 18.00 9.57 0.00 3.35
373 476 7.065324 CCACACAAGACTACAAACTTAGTTCAA 59.935 37.037 0.00 0.00 32.17 2.69
389 492 0.865769 CGTTACAGGCCACACAAGAC 59.134 55.000 5.01 0.00 0.00 3.01
407 510 9.222916 CACTGTACTATAAAGTCTTGTGTATCG 57.777 37.037 0.00 0.00 37.15 2.92
424 527 4.341235 ACTTCTGCAAGTCACACTGTACTA 59.659 41.667 0.00 0.00 38.62 1.82
431 534 1.869767 CTCCACTTCTGCAAGTCACAC 59.130 52.381 0.00 0.00 41.24 3.82
443 546 3.943381 TGAATCATGTCATGCTCCACTTC 59.057 43.478 8.03 5.02 0.00 3.01
448 551 5.509716 TTTGATGAATCATGTCATGCTCC 57.490 39.130 8.03 0.33 38.38 4.70
463 566 7.773489 TTGACATGTAAAGGGAATTTGATGA 57.227 32.000 0.00 0.00 31.36 2.92
464 567 7.546667 CCTTTGACATGTAAAGGGAATTTGATG 59.453 37.037 24.61 7.97 46.65 3.07
465 568 7.614494 CCTTTGACATGTAAAGGGAATTTGAT 58.386 34.615 24.61 0.00 46.65 2.57
466 569 6.991938 CCTTTGACATGTAAAGGGAATTTGA 58.008 36.000 24.61 0.44 46.65 2.69
475 578 6.970484 ACTGTAAAGCCTTTGACATGTAAAG 58.030 36.000 0.00 9.22 35.45 1.85
476 579 6.952773 ACTGTAAAGCCTTTGACATGTAAA 57.047 33.333 0.00 0.00 0.00 2.01
477 580 6.993308 TGTACTGTAAAGCCTTTGACATGTAA 59.007 34.615 0.00 0.00 0.00 2.41
478 581 6.425721 GTGTACTGTAAAGCCTTTGACATGTA 59.574 38.462 0.00 3.66 0.00 2.29
479 582 5.238650 GTGTACTGTAAAGCCTTTGACATGT 59.761 40.000 0.00 0.00 0.00 3.21
480 583 5.238432 TGTGTACTGTAAAGCCTTTGACATG 59.762 40.000 0.00 0.00 0.00 3.21
481 584 5.373222 TGTGTACTGTAAAGCCTTTGACAT 58.627 37.500 0.00 0.00 0.00 3.06
482 585 4.771903 TGTGTACTGTAAAGCCTTTGACA 58.228 39.130 0.00 0.36 0.00 3.58
483 586 5.238650 ACATGTGTACTGTAAAGCCTTTGAC 59.761 40.000 0.00 0.00 0.00 3.18
484 587 5.238432 CACATGTGTACTGTAAAGCCTTTGA 59.762 40.000 18.03 0.00 0.00 2.69
485 588 5.238432 TCACATGTGTACTGTAAAGCCTTTG 59.762 40.000 24.63 0.00 0.00 2.77
486 589 5.373222 TCACATGTGTACTGTAAAGCCTTT 58.627 37.500 24.63 0.00 0.00 3.11
487 590 4.968259 TCACATGTGTACTGTAAAGCCTT 58.032 39.130 24.63 0.00 0.00 4.35
488 591 4.617253 TCACATGTGTACTGTAAAGCCT 57.383 40.909 24.63 0.00 0.00 4.58
489 592 4.378459 GCTTCACATGTGTACTGTAAAGCC 60.378 45.833 24.77 13.42 0.00 4.35
490 593 4.452455 AGCTTCACATGTGTACTGTAAAGC 59.548 41.667 26.51 26.51 0.00 3.51
491 594 6.545504 AAGCTTCACATGTGTACTGTAAAG 57.454 37.500 24.63 18.52 0.00 1.85
492 595 6.540551 TCAAAGCTTCACATGTGTACTGTAAA 59.459 34.615 24.63 9.42 0.00 2.01
493 596 6.052360 TCAAAGCTTCACATGTGTACTGTAA 58.948 36.000 24.63 10.12 0.00 2.41
494 597 5.606505 TCAAAGCTTCACATGTGTACTGTA 58.393 37.500 24.63 1.92 0.00 2.74
495 598 4.450976 TCAAAGCTTCACATGTGTACTGT 58.549 39.130 24.63 12.90 0.00 3.55
496 599 5.179929 TGATCAAAGCTTCACATGTGTACTG 59.820 40.000 24.63 14.07 0.00 2.74
497 600 5.308014 TGATCAAAGCTTCACATGTGTACT 58.692 37.500 24.63 16.88 0.00 2.73
498 601 5.611796 TGATCAAAGCTTCACATGTGTAC 57.388 39.130 24.63 15.02 0.00 2.90
499 602 6.822667 ATTGATCAAAGCTTCACATGTGTA 57.177 33.333 24.63 15.11 0.00 2.90
500 603 5.717078 ATTGATCAAAGCTTCACATGTGT 57.283 34.783 24.63 3.12 0.00 3.72
501 604 8.188799 AGAATATTGATCAAAGCTTCACATGTG 58.811 33.333 20.18 20.18 0.00 3.21
502 605 8.188799 CAGAATATTGATCAAAGCTTCACATGT 58.811 33.333 13.09 0.00 0.00 3.21
503 606 8.188799 ACAGAATATTGATCAAAGCTTCACATG 58.811 33.333 13.09 11.46 0.00 3.21
504 607 8.289939 ACAGAATATTGATCAAAGCTTCACAT 57.710 30.769 13.09 0.00 0.00 3.21
505 608 7.692460 ACAGAATATTGATCAAAGCTTCACA 57.308 32.000 13.09 0.00 0.00 3.58
506 609 7.487189 CCAACAGAATATTGATCAAAGCTTCAC 59.513 37.037 13.09 1.32 0.00 3.18
507 610 7.177216 ACCAACAGAATATTGATCAAAGCTTCA 59.823 33.333 13.09 0.00 0.00 3.02
508 611 7.542025 ACCAACAGAATATTGATCAAAGCTTC 58.458 34.615 13.09 14.38 0.00 3.86
509 612 7.395489 AGACCAACAGAATATTGATCAAAGCTT 59.605 33.333 13.09 6.24 0.00 3.74
510 613 6.888632 AGACCAACAGAATATTGATCAAAGCT 59.111 34.615 13.09 4.71 0.00 3.74
511 614 6.971184 CAGACCAACAGAATATTGATCAAAGC 59.029 38.462 13.09 2.39 0.00 3.51
512 615 6.971184 GCAGACCAACAGAATATTGATCAAAG 59.029 38.462 13.09 1.52 0.00 2.77
513 616 6.127647 GGCAGACCAACAGAATATTGATCAAA 60.128 38.462 13.09 2.57 35.26 2.69
514 617 5.357878 GGCAGACCAACAGAATATTGATCAA 59.642 40.000 11.26 11.26 35.26 2.57
515 618 4.883585 GGCAGACCAACAGAATATTGATCA 59.116 41.667 0.00 0.00 35.26 2.92
516 619 4.883585 TGGCAGACCAACAGAATATTGATC 59.116 41.667 0.00 0.00 45.37 2.92
517 620 4.858850 TGGCAGACCAACAGAATATTGAT 58.141 39.130 0.00 0.00 45.37 2.57
559 717 4.151157 TGCTGATTATCTGAATGATTCGCG 59.849 41.667 0.00 0.00 36.65 5.87
563 721 6.832384 ACAACCTGCTGATTATCTGAATGATT 59.168 34.615 3.25 0.00 36.65 2.57
587 745 6.200665 TGTCATGAGCAAAATTTAGCAAACAC 59.799 34.615 0.00 0.00 0.00 3.32
590 748 6.985645 ACTTGTCATGAGCAAAATTTAGCAAA 59.014 30.769 0.00 0.00 0.00 3.68
600 758 1.872952 CCGACACTTGTCATGAGCAAA 59.127 47.619 9.94 0.00 44.99 3.68
601 759 1.069978 TCCGACACTTGTCATGAGCAA 59.930 47.619 9.94 3.14 44.99 3.91
627 785 3.480470 CTCGGTATCATTCCTGGCAATT 58.520 45.455 0.00 0.00 0.00 2.32
633 791 2.918712 AAGGCTCGGTATCATTCCTG 57.081 50.000 0.00 0.00 0.00 3.86
670 828 2.592102 ATTTCCCTGAAGAGCTGCAA 57.408 45.000 1.02 0.00 0.00 4.08
679 837 8.026607 CGTTTTTATCTGCTAAATTTCCCTGAA 58.973 33.333 0.00 0.00 0.00 3.02
681 839 7.535139 TCGTTTTTATCTGCTAAATTTCCCTG 58.465 34.615 0.00 0.00 0.00 4.45
722 885 1.545428 GGCGGATCCATGAAATGCCTA 60.545 52.381 13.41 0.00 44.97 3.93
744 907 8.133024 TGGTAGATAATGCCTTGTGAATTTTT 57.867 30.769 0.00 0.00 34.11 1.94
767 930 4.171005 CTGTTTTGTAGCATTGCTCATGG 58.829 43.478 15.81 0.00 40.44 3.66
773 936 3.976169 TGAACCTGTTTTGTAGCATTGC 58.024 40.909 0.00 0.00 0.00 3.56
793 957 6.976925 GGAATAAGAATGTGATTGCTTTCCTG 59.023 38.462 0.00 0.00 0.00 3.86
865 1030 0.753262 AGACCGCACTGAGTTGAACT 59.247 50.000 0.00 0.00 0.00 3.01
877 1042 2.753452 CTCCAAGTAGTTAGAGACCGCA 59.247 50.000 0.00 0.00 0.00 5.69
894 1059 5.104693 TGGACTTGTTACTTGTCTTTCTCCA 60.105 40.000 7.81 0.00 0.00 3.86
905 1070 5.359576 TGATTTTGCTGTGGACTTGTTACTT 59.640 36.000 0.00 0.00 0.00 2.24
906 1071 4.887071 TGATTTTGCTGTGGACTTGTTACT 59.113 37.500 0.00 0.00 0.00 2.24
929 1094 0.254178 ACCTTCCATCTGCGCATCTT 59.746 50.000 12.24 0.00 0.00 2.40
953 1118 6.599638 AGTGGTCTGAGTTTTATTTAGATGGC 59.400 38.462 0.00 0.00 0.00 4.40
1035 1200 3.500680 GGACGATAGAGTCATCAGAGACC 59.499 52.174 0.00 0.00 42.62 3.85
1137 1302 3.283259 AATCCCCGATTGAGGTTTCTC 57.717 47.619 0.00 0.00 40.36 2.87
1175 1344 9.930158 AATAATAGTACCCTTTTTCCATTGCTA 57.070 29.630 0.00 0.00 0.00 3.49
1230 1417 7.230510 TCTGCACAGTCAAGGTAATTAATTGTT 59.769 33.333 11.05 0.00 0.00 2.83
1294 1481 3.200593 GGAGTGCTCAGCATGGCG 61.201 66.667 0.54 0.00 41.91 5.69
1384 1571 3.446873 TGTTGCAATGAACCTTTGTCACT 59.553 39.130 0.59 0.00 0.00 3.41
1385 1572 3.551485 GTGTTGCAATGAACCTTTGTCAC 59.449 43.478 0.59 0.00 0.00 3.67
1389 1576 5.288015 TGTATGTGTTGCAATGAACCTTTG 58.712 37.500 0.59 0.00 0.00 2.77
1391 1578 5.726980 ATGTATGTGTTGCAATGAACCTT 57.273 34.783 0.59 0.00 0.00 3.50
1474 1665 9.851686 TGGCATTGAATAACTAGAAACTGATAT 57.148 29.630 0.00 0.00 0.00 1.63
1514 1708 7.762615 ACATCAGATTGCCTAAAATGAAACATG 59.237 33.333 0.00 0.00 0.00 3.21
1538 1732 3.803715 GCTGGCTGAAGTACTTTGAGACA 60.804 47.826 18.41 18.41 0.00 3.41
1596 1791 7.269522 TCCCATATTGAGGCATACATGATTA 57.730 36.000 0.00 0.00 0.00 1.75
1617 1813 2.203209 ATCGCGCCATCCTTTCCC 60.203 61.111 0.00 0.00 0.00 3.97
1660 1856 2.166254 CTGTTTTGTTGTCAGTGGCCTT 59.834 45.455 3.32 0.00 0.00 4.35
1672 1868 4.718961 AGTGCATCCTACTCTGTTTTGTT 58.281 39.130 0.00 0.00 0.00 2.83
1738 1935 4.700268 TGTTATCGTGCTGCATTTTGAT 57.300 36.364 5.27 9.84 0.00 2.57
1770 1967 1.269166 CTAGCTTTGCTCGTGTACCG 58.731 55.000 0.00 0.00 40.44 4.02
1799 1996 5.372959 GGGGAGAAGGATAGGGAGTTTAAAT 59.627 44.000 0.00 0.00 0.00 1.40
1801 1998 4.304659 GGGGAGAAGGATAGGGAGTTTAA 58.695 47.826 0.00 0.00 0.00 1.52
1812 2014 1.004891 GGGACTGGGGGAGAAGGAT 59.995 63.158 0.00 0.00 0.00 3.24
1881 2083 9.883142 CTCTCCTTTTCTTCTGAATTGTATAGT 57.117 33.333 0.00 0.00 31.56 2.12
1883 2085 9.046846 TCCTCTCCTTTTCTTCTGAATTGTATA 57.953 33.333 0.00 0.00 31.56 1.47
1885 2087 7.316393 TCCTCTCCTTTTCTTCTGAATTGTA 57.684 36.000 0.00 0.00 31.56 2.41
1887 2089 6.939163 TCTTCCTCTCCTTTTCTTCTGAATTG 59.061 38.462 0.00 0.00 31.56 2.32
1888 2090 7.084268 TCTTCCTCTCCTTTTCTTCTGAATT 57.916 36.000 0.00 0.00 31.56 2.17
1889 2091 6.694445 TCTTCCTCTCCTTTTCTTCTGAAT 57.306 37.500 0.00 0.00 31.56 2.57
1898 2100 5.770685 ATGCTAGTTCTTCCTCTCCTTTT 57.229 39.130 0.00 0.00 0.00 2.27
1902 2104 5.862678 AGTTATGCTAGTTCTTCCTCTCC 57.137 43.478 0.00 0.00 0.00 3.71
1903 2105 8.172352 TGATAGTTATGCTAGTTCTTCCTCTC 57.828 38.462 0.00 0.00 32.45 3.20
1904 2106 8.417884 GTTGATAGTTATGCTAGTTCTTCCTCT 58.582 37.037 0.00 0.00 32.45 3.69
1908 2110 9.974750 GTTTGTTGATAGTTATGCTAGTTCTTC 57.025 33.333 0.00 0.00 32.45 2.87
1910 2112 9.155975 CTGTTTGTTGATAGTTATGCTAGTTCT 57.844 33.333 0.00 0.00 32.45 3.01
1911 2113 9.151471 TCTGTTTGTTGATAGTTATGCTAGTTC 57.849 33.333 0.00 0.00 32.45 3.01
1913 2115 9.502091 TTTCTGTTTGTTGATAGTTATGCTAGT 57.498 29.630 0.00 0.00 32.45 2.57
1935 2137 2.066262 CGCACGAATGTACCTGTTTCT 58.934 47.619 0.00 0.00 0.00 2.52
1959 2161 2.961522 ACCTGTTTTGCACGTAATCG 57.038 45.000 0.00 0.00 43.34 3.34
1960 2162 5.406175 TGTACTACCTGTTTTGCACGTAATC 59.594 40.000 0.00 0.00 0.00 1.75
1961 2163 5.178067 GTGTACTACCTGTTTTGCACGTAAT 59.822 40.000 0.00 0.00 0.00 1.89
1962 2164 4.507388 GTGTACTACCTGTTTTGCACGTAA 59.493 41.667 0.00 0.00 0.00 3.18
1963 2165 4.050553 GTGTACTACCTGTTTTGCACGTA 58.949 43.478 0.00 0.00 0.00 3.57
1965 2167 3.128349 AGTGTACTACCTGTTTTGCACG 58.872 45.455 0.00 0.00 0.00 5.34
1966 2168 4.377897 AGAGTGTACTACCTGTTTTGCAC 58.622 43.478 0.00 0.00 0.00 4.57
1967 2169 4.682778 AGAGTGTACTACCTGTTTTGCA 57.317 40.909 0.00 0.00 0.00 4.08
1971 2173 9.676861 AAAAACTAAAGAGTGTACTACCTGTTT 57.323 29.630 0.00 1.86 35.52 2.83
1973 2175 8.702819 AGAAAAACTAAAGAGTGTACTACCTGT 58.297 33.333 0.00 0.00 35.52 4.00
1974 2176 9.543783 AAGAAAAACTAAAGAGTGTACTACCTG 57.456 33.333 0.00 0.00 35.52 4.00
1985 2187 8.578769 GCGATTGCATTAAGAAAAACTAAAGAG 58.421 33.333 0.00 0.00 42.15 2.85
2032 2274 6.583806 CCTTCATCTATTCTTGTTTGTTGCAC 59.416 38.462 0.00 0.00 0.00 4.57
2052 2294 2.883574 CGTATGCGTTTCCTACCTTCA 58.116 47.619 0.00 0.00 0.00 3.02
2066 2308 5.155332 ACTTTGACAAGGGCAACGTATGC 62.155 47.826 12.44 12.44 42.88 3.14
2093 2335 3.659183 AAGGACTTCATGATTCAGGGG 57.341 47.619 0.00 0.00 0.00 4.79
2207 2454 6.989169 CCTCTTCTGTTATCCCATCTGTAAAG 59.011 42.308 0.00 0.00 0.00 1.85
2229 2476 0.534873 GAGAGACTGTTGGAGCCCTC 59.465 60.000 0.00 0.00 0.00 4.30
2239 2486 0.882474 GCACTGGTACGAGAGACTGT 59.118 55.000 12.28 0.00 0.00 3.55
2245 2492 1.454201 CTCTCTGCACTGGTACGAGA 58.546 55.000 12.28 3.26 0.00 4.04
2293 2540 0.473694 TCGGGCTGTATGGGGATGAT 60.474 55.000 0.00 0.00 0.00 2.45


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.