Multiple sequence alignment - TraesCS1A01G006500

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G006500 chr1A 100.000 5493 0 0 1 5493 3583502 3578010 0.000000e+00 10144.0
1 TraesCS1A01G006500 chr1A 89.451 3299 305 14 2216 5493 27213279 27216555 0.000000e+00 4124.0
2 TraesCS1A01G006500 chr1A 85.780 3453 473 17 1018 4459 3454767 3451322 0.000000e+00 3640.0
3 TraesCS1A01G006500 chr1A 86.761 2470 305 17 2003 4459 3680494 3678034 0.000000e+00 2730.0
4 TraesCS1A01G006500 chr1A 85.059 2550 323 30 2240 4743 3701243 3698706 0.000000e+00 2545.0
5 TraesCS1A01G006500 chr1A 87.577 1940 166 32 1 1895 27211265 27213174 0.000000e+00 2178.0
6 TraesCS1A01G006500 chr1A 87.613 1106 129 6 924 2024 3657433 3656331 0.000000e+00 1277.0
7 TraesCS1A01G006500 chr1A 80.124 322 52 11 246 564 27210010 27210322 4.280000e-56 230.0
8 TraesCS1A01G006500 chr1A 89.623 106 7 2 256 357 3762769 3762664 1.240000e-26 132.0
9 TraesCS1A01G006500 chr1A 81.982 111 20 0 2059 2169 3656512 3656402 1.630000e-15 95.3
10 TraesCS1A01G006500 chr1A 94.737 57 2 1 298 354 2926833 2926888 2.730000e-13 87.9
11 TraesCS1A01G006500 chr1A 93.023 43 2 1 309 351 27209641 27209682 1.650000e-05 62.1
12 TraesCS1A01G006500 chr1D 91.464 3620 272 15 1023 4606 447139 450757 0.000000e+00 4939.0
13 TraesCS1A01G006500 chr1D 85.755 3152 388 37 1849 4946 459956 463100 0.000000e+00 3277.0
14 TraesCS1A01G006500 chr1D 88.469 2463 272 12 2003 4459 494547826 494550282 0.000000e+00 2964.0
15 TraesCS1A01G006500 chr1D 85.476 2575 357 13 1894 4459 620313 617747 0.000000e+00 2667.0
16 TraesCS1A01G006500 chr1D 86.226 1256 164 6 917 2169 458667 459916 0.000000e+00 1352.0
17 TraesCS1A01G006500 chr1D 82.271 1444 210 31 602 2024 647030 648448 0.000000e+00 1206.0
18 TraesCS1A01G006500 chr1D 78.596 570 55 36 4762 5320 395821 396334 1.150000e-81 315.0
19 TraesCS1A01G006500 chr1D 82.927 123 19 2 2039 2160 648247 648368 5.820000e-20 110.0
20 TraesCS1A01G006500 chr3D 84.096 3169 410 57 1894 5008 560057285 560054157 0.000000e+00 2974.0
21 TraesCS1A01G006500 chr1B 87.839 2467 281 16 2003 4459 687786365 687788822 0.000000e+00 2876.0
22 TraesCS1A01G006500 chr1B 84.490 2753 361 45 1894 4606 3943209 3945935 0.000000e+00 2658.0
23 TraesCS1A01G006500 chr1B 90.457 985 94 0 1026 2010 4483639 4482655 0.000000e+00 1299.0
24 TraesCS1A01G006500 chr1B 89.521 1002 105 0 1023 2024 3951180 3952181 0.000000e+00 1269.0
25 TraesCS1A01G006500 chr1B 84.270 1246 191 5 918 2160 4909517 4908274 0.000000e+00 1210.0
26 TraesCS1A01G006500 chr1B 79.496 912 114 31 4141 5007 4153931 4154814 1.030000e-161 580.0
27 TraesCS1A01G006500 chr1B 83.613 476 50 16 4463 4914 4821174 4820703 6.580000e-114 422.0
28 TraesCS1A01G006500 chr1B 80.109 548 71 18 4552 5081 3997913 3998440 1.870000e-99 374.0
29 TraesCS1A01G006500 chr1B 80.588 340 50 8 5139 5475 3998437 3998763 1.180000e-61 248.0
30 TraesCS1A01G006500 chr1B 80.165 242 44 3 2002 2241 4823718 4823479 1.570000e-40 178.0
31 TraesCS1A01G006500 chr1B 86.232 138 15 4 954 1088 4581054 4580918 4.430000e-31 147.0
32 TraesCS1A01G006500 chr1B 93.258 89 6 0 249 337 4562410 4562322 1.240000e-26 132.0
33 TraesCS1A01G006500 chr1B 85.714 105 13 1 5229 5331 4499212 4499108 5.820000e-20 110.0
34 TraesCS1A01G006500 chr1B 89.610 77 7 1 261 337 4537936 4537861 4.530000e-16 97.1
35 TraesCS1A01G006500 chr1B 89.583 48 5 0 610 657 4583369 4583322 1.650000e-05 62.1
36 TraesCS1A01G006500 chr7D 87.805 82 8 2 4767 4847 603770155 603770075 1.630000e-15 95.3
37 TraesCS1A01G006500 chr7D 85.882 85 10 2 4764 4847 73152039 73152122 7.580000e-14 89.8
38 TraesCS1A01G006500 chr7D 84.524 84 13 0 4764 4847 73147262 73147345 3.530000e-12 84.2
39 TraesCS1A01G006500 chr2D 87.805 82 8 2 4767 4847 263502501 263502421 1.630000e-15 95.3
40 TraesCS1A01G006500 chr6D 87.013 77 8 2 4767 4842 468165623 468165548 9.800000e-13 86.1


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G006500 chr1A 3578010 3583502 5492 True 10144.000 10144 100.00000 1 5493 1 chr1A.!!$R2 5492
1 TraesCS1A01G006500 chr1A 3451322 3454767 3445 True 3640.000 3640 85.78000 1018 4459 1 chr1A.!!$R1 3441
2 TraesCS1A01G006500 chr1A 3678034 3680494 2460 True 2730.000 2730 86.76100 2003 4459 1 chr1A.!!$R3 2456
3 TraesCS1A01G006500 chr1A 3698706 3701243 2537 True 2545.000 2545 85.05900 2240 4743 1 chr1A.!!$R4 2503
4 TraesCS1A01G006500 chr1A 27209641 27216555 6914 False 1648.525 4124 87.54375 1 5493 4 chr1A.!!$F2 5492
5 TraesCS1A01G006500 chr1A 3656331 3657433 1102 True 686.150 1277 84.79750 924 2169 2 chr1A.!!$R6 1245
6 TraesCS1A01G006500 chr1D 447139 450757 3618 False 4939.000 4939 91.46400 1023 4606 1 chr1D.!!$F2 3583
7 TraesCS1A01G006500 chr1D 494547826 494550282 2456 False 2964.000 2964 88.46900 2003 4459 1 chr1D.!!$F3 2456
8 TraesCS1A01G006500 chr1D 617747 620313 2566 True 2667.000 2667 85.47600 1894 4459 1 chr1D.!!$R1 2565
9 TraesCS1A01G006500 chr1D 458667 463100 4433 False 2314.500 3277 85.99050 917 4946 2 chr1D.!!$F4 4029
10 TraesCS1A01G006500 chr1D 647030 648448 1418 False 658.000 1206 82.59900 602 2160 2 chr1D.!!$F5 1558
11 TraesCS1A01G006500 chr1D 395821 396334 513 False 315.000 315 78.59600 4762 5320 1 chr1D.!!$F1 558
12 TraesCS1A01G006500 chr3D 560054157 560057285 3128 True 2974.000 2974 84.09600 1894 5008 1 chr3D.!!$R1 3114
13 TraesCS1A01G006500 chr1B 687786365 687788822 2457 False 2876.000 2876 87.83900 2003 4459 1 chr1B.!!$F4 2456
14 TraesCS1A01G006500 chr1B 3943209 3945935 2726 False 2658.000 2658 84.49000 1894 4606 1 chr1B.!!$F1 2712
15 TraesCS1A01G006500 chr1B 4482655 4483639 984 True 1299.000 1299 90.45700 1026 2010 1 chr1B.!!$R1 984
16 TraesCS1A01G006500 chr1B 3951180 3952181 1001 False 1269.000 1269 89.52100 1023 2024 1 chr1B.!!$F2 1001
17 TraesCS1A01G006500 chr1B 4908274 4909517 1243 True 1210.000 1210 84.27000 918 2160 1 chr1B.!!$R5 1242
18 TraesCS1A01G006500 chr1B 4153931 4154814 883 False 580.000 580 79.49600 4141 5007 1 chr1B.!!$F3 866
19 TraesCS1A01G006500 chr1B 3997913 3998763 850 False 311.000 374 80.34850 4552 5475 2 chr1B.!!$F5 923
20 TraesCS1A01G006500 chr1B 4820703 4823718 3015 True 300.000 422 81.88900 2002 4914 2 chr1B.!!$R7 2912

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
873 1104 0.032813 AATAGGCAACCAGCTGGCAT 60.033 50.000 33.06 19.29 44.08 4.40 F
875 1106 0.181114 TAGGCAACCAGCTGGCATAG 59.819 55.000 33.06 19.76 44.08 2.23 F
877 1108 0.466922 GGCAACCAGCTGGCATAGAT 60.467 55.000 33.06 9.33 44.79 1.98 F
1107 2868 0.558220 ATGGAGGGATCTCACGGAGA 59.442 55.000 0.00 6.14 43.20 3.71 F
1192 2953 1.410153 CTTGGCAGGAAAACACAAGCT 59.590 47.619 0.00 0.00 33.12 3.74 F
1193 2954 1.484038 TGGCAGGAAAACACAAGCTT 58.516 45.000 0.00 0.00 0.00 3.74 F
1208 2969 1.891919 GCTTGTGCAACTGGACGGA 60.892 57.895 0.00 0.00 39.39 4.69 F
2055 3816 2.575279 AGGGAATCTCACTGTGCTCAAT 59.425 45.455 2.12 0.00 0.00 2.57 F
3032 5600 2.616842 ACAACTTTAGTGGGAGTTTGCG 59.383 45.455 0.00 0.00 34.04 4.85 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1954 3715 0.175989 GCGAGGTTCCCTAGTTCTGG 59.824 60.000 0.00 0.0 31.76 3.86 R
1955 3716 1.187087 AGCGAGGTTCCCTAGTTCTG 58.813 55.000 0.00 0.0 31.76 3.02 R
1956 3717 2.822707 TAGCGAGGTTCCCTAGTTCT 57.177 50.000 0.00 0.0 31.76 3.01 R
1963 3724 3.118519 TGGTTTAGAATAGCGAGGTTCCC 60.119 47.826 0.00 0.0 0.00 3.97 R
3171 5740 0.040204 CAAAGGAGGGTGGGATGCTT 59.960 55.000 0.00 0.0 0.00 3.91 R
3177 5746 2.278330 GCTTGCAAAGGAGGGTGGG 61.278 63.158 0.00 0.0 46.35 4.61 R
3357 5926 2.635915 TGTCTTCCGTTTATGGTGACCT 59.364 45.455 2.11 0.0 34.85 3.85 R
3419 5988 1.515081 GGCAATTGCAGCAACAATGT 58.485 45.000 30.32 0.0 44.36 2.71 R
4679 7314 0.320771 ATGTCGTGAACAGGCTCACC 60.321 55.000 0.39 0.0 42.34 4.02 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
17 18 2.781957 TTCCAATTAGTGCGCGCG 59.218 55.556 28.44 28.44 0.00 6.86
18 19 3.375500 TTCCAATTAGTGCGCGCGC 62.375 57.895 45.02 45.02 42.35 6.86
19 20 4.886925 CCAATTAGTGCGCGCGCC 62.887 66.667 46.85 36.79 41.09 6.53
21 22 4.160635 AATTAGTGCGCGCGCCAC 62.161 61.111 46.85 39.58 41.09 5.01
32 33 1.516386 CGCGCCACTGTACTGTAGG 60.516 63.158 0.00 10.21 0.00 3.18
33 34 1.810030 GCGCCACTGTACTGTAGGC 60.810 63.158 23.77 23.77 41.86 3.93
34 35 1.589630 CGCCACTGTACTGTAGGCA 59.410 57.895 28.30 0.00 45.47 4.75
35 36 0.175760 CGCCACTGTACTGTAGGCAT 59.824 55.000 28.30 1.37 45.47 4.40
36 37 1.656652 GCCACTGTACTGTAGGCATG 58.343 55.000 26.33 9.08 44.59 4.06
37 38 1.656652 CCACTGTACTGTAGGCATGC 58.343 55.000 9.90 9.90 0.00 4.06
38 39 1.066215 CCACTGTACTGTAGGCATGCA 60.066 52.381 21.36 0.00 0.00 3.96
39 40 2.274437 CACTGTACTGTAGGCATGCAG 58.726 52.381 21.36 15.10 44.07 4.41
40 41 1.293924 CTGTACTGTAGGCATGCAGC 58.706 55.000 21.36 9.17 42.41 5.25
49 50 3.301070 GCATGCAGCCCCAATTCA 58.699 55.556 14.21 0.00 37.23 2.57
50 51 1.827394 GCATGCAGCCCCAATTCAT 59.173 52.632 14.21 0.00 37.23 2.57
51 52 0.249741 GCATGCAGCCCCAATTCATC 60.250 55.000 14.21 0.00 37.23 2.92
53 54 0.263765 ATGCAGCCCCAATTCATCCT 59.736 50.000 0.00 0.00 0.00 3.24
54 55 0.396139 TGCAGCCCCAATTCATCCTC 60.396 55.000 0.00 0.00 0.00 3.71
55 56 1.111715 GCAGCCCCAATTCATCCTCC 61.112 60.000 0.00 0.00 0.00 4.30
56 57 0.554792 CAGCCCCAATTCATCCTCCT 59.445 55.000 0.00 0.00 0.00 3.69
57 58 0.554792 AGCCCCAATTCATCCTCCTG 59.445 55.000 0.00 0.00 0.00 3.86
59 60 0.259647 CCCCAATTCATCCTCCTGCA 59.740 55.000 0.00 0.00 0.00 4.41
60 61 1.396653 CCCAATTCATCCTCCTGCAC 58.603 55.000 0.00 0.00 0.00 4.57
61 62 1.341285 CCCAATTCATCCTCCTGCACA 60.341 52.381 0.00 0.00 0.00 4.57
62 63 2.449464 CCAATTCATCCTCCTGCACAA 58.551 47.619 0.00 0.00 0.00 3.33
64 65 1.760192 ATTCATCCTCCTGCACAAGC 58.240 50.000 0.00 0.00 42.57 4.01
65 66 0.674581 TTCATCCTCCTGCACAAGCG 60.675 55.000 0.00 0.00 46.23 4.68
66 67 2.437359 ATCCTCCTGCACAAGCGC 60.437 61.111 0.00 0.00 46.23 5.92
67 68 3.258228 ATCCTCCTGCACAAGCGCA 62.258 57.895 11.47 0.00 46.23 6.09
69 70 2.554636 CCTCCTGCACAAGCGCAAA 61.555 57.895 11.47 0.00 46.23 3.68
70 71 1.359833 CTCCTGCACAAGCGCAAAA 59.640 52.632 11.47 0.00 46.23 2.44
89 90 4.405116 AAAAAGCAAGCACCAAATCAGA 57.595 36.364 0.00 0.00 0.00 3.27
93 94 2.694628 AGCAAGCACCAAATCAGACAAA 59.305 40.909 0.00 0.00 0.00 2.83
95 96 3.492011 GCAAGCACCAAATCAGACAAAAG 59.508 43.478 0.00 0.00 0.00 2.27
96 97 3.375782 AGCACCAAATCAGACAAAAGC 57.624 42.857 0.00 0.00 0.00 3.51
97 98 2.694628 AGCACCAAATCAGACAAAAGCA 59.305 40.909 0.00 0.00 0.00 3.91
100 101 3.492011 CACCAAATCAGACAAAAGCAAGC 59.508 43.478 0.00 0.00 0.00 4.01
101 102 3.385755 ACCAAATCAGACAAAAGCAAGCT 59.614 39.130 0.00 0.00 0.00 3.74
102 103 3.739300 CCAAATCAGACAAAAGCAAGCTG 59.261 43.478 0.00 0.00 0.00 4.24
103 104 4.500205 CCAAATCAGACAAAAGCAAGCTGA 60.500 41.667 0.00 0.00 39.61 4.26
104 105 4.500603 AATCAGACAAAAGCAAGCTGAG 57.499 40.909 0.00 0.00 38.79 3.35
105 106 1.605710 TCAGACAAAAGCAAGCTGAGC 59.394 47.619 0.00 0.00 32.36 4.26
107 108 2.026641 AGACAAAAGCAAGCTGAGCAA 58.973 42.857 7.39 0.00 0.00 3.91
108 109 2.428171 AGACAAAAGCAAGCTGAGCAAA 59.572 40.909 7.39 0.00 0.00 3.68
110 111 3.128349 ACAAAAGCAAGCTGAGCAAATG 58.872 40.909 7.39 3.74 0.00 2.32
111 112 2.450609 AAAGCAAGCTGAGCAAATGG 57.549 45.000 7.39 0.00 0.00 3.16
112 113 1.335145 AAGCAAGCTGAGCAAATGGT 58.665 45.000 7.39 5.47 0.00 3.55
113 114 1.335145 AGCAAGCTGAGCAAATGGTT 58.665 45.000 7.39 0.00 0.00 3.67
114 115 1.000506 AGCAAGCTGAGCAAATGGTTG 59.999 47.619 7.39 2.05 40.71 3.77
116 117 2.925306 GCAAGCTGAGCAAATGGTTGAG 60.925 50.000 7.39 0.00 40.35 3.02
117 118 2.555325 CAAGCTGAGCAAATGGTTGAGA 59.445 45.455 7.39 0.00 40.35 3.27
118 119 2.434428 AGCTGAGCAAATGGTTGAGAG 58.566 47.619 7.39 0.00 36.83 3.20
120 121 2.161211 GCTGAGCAAATGGTTGAGAGAC 59.839 50.000 0.00 0.00 36.83 3.36
121 122 3.405831 CTGAGCAAATGGTTGAGAGACA 58.594 45.455 0.00 0.00 36.83 3.41
122 123 3.817084 CTGAGCAAATGGTTGAGAGACAA 59.183 43.478 0.00 0.00 36.83 3.18
123 124 3.817084 TGAGCAAATGGTTGAGAGACAAG 59.183 43.478 0.00 0.00 39.30 3.16
134 135 4.292186 TGAGAGACAAGCTTTAGGCATT 57.708 40.909 0.00 0.00 44.79 3.56
136 137 4.256920 GAGAGACAAGCTTTAGGCATTCA 58.743 43.478 0.00 0.00 44.79 2.57
137 138 4.006319 AGAGACAAGCTTTAGGCATTCAC 58.994 43.478 0.00 0.00 44.79 3.18
138 139 3.753272 GAGACAAGCTTTAGGCATTCACA 59.247 43.478 0.00 0.00 44.79 3.58
139 140 3.755378 AGACAAGCTTTAGGCATTCACAG 59.245 43.478 0.00 0.00 44.79 3.66
140 141 3.490348 ACAAGCTTTAGGCATTCACAGT 58.510 40.909 0.00 0.00 44.79 3.55
141 142 3.254166 ACAAGCTTTAGGCATTCACAGTG 59.746 43.478 0.00 0.00 44.79 3.66
142 143 3.423539 AGCTTTAGGCATTCACAGTGA 57.576 42.857 0.00 0.00 44.79 3.41
144 145 3.077359 GCTTTAGGCATTCACAGTGACT 58.923 45.455 1.52 0.00 41.35 3.41
145 146 3.120060 GCTTTAGGCATTCACAGTGACTG 60.120 47.826 11.70 11.70 41.35 3.51
148 149 1.421268 AGGCATTCACAGTGACTGGAA 59.579 47.619 17.92 16.44 32.53 3.53
149 150 2.158623 AGGCATTCACAGTGACTGGAAA 60.159 45.455 17.92 10.65 32.53 3.13
150 151 2.030805 GGCATTCACAGTGACTGGAAAC 60.031 50.000 17.92 12.56 35.51 2.78
151 152 2.618241 GCATTCACAGTGACTGGAAACA 59.382 45.455 17.92 0.00 35.51 2.83
152 153 3.066621 GCATTCACAGTGACTGGAAACAA 59.933 43.478 17.92 2.31 42.06 2.83
153 154 4.439974 GCATTCACAGTGACTGGAAACAAA 60.440 41.667 17.92 2.26 42.06 2.83
154 155 4.963276 TTCACAGTGACTGGAAACAAAG 57.037 40.909 17.92 0.00 42.06 2.77
155 156 2.682856 TCACAGTGACTGGAAACAAAGC 59.317 45.455 17.92 0.00 42.06 3.51
156 157 2.423185 CACAGTGACTGGAAACAAAGCA 59.577 45.455 17.92 0.00 42.06 3.91
157 158 3.088532 ACAGTGACTGGAAACAAAGCAA 58.911 40.909 17.92 0.00 42.06 3.91
158 159 3.509575 ACAGTGACTGGAAACAAAGCAAA 59.490 39.130 17.92 0.00 42.06 3.68
159 160 4.160252 ACAGTGACTGGAAACAAAGCAAAT 59.840 37.500 17.92 0.00 42.06 2.32
160 161 4.505191 CAGTGACTGGAAACAAAGCAAATG 59.495 41.667 4.28 0.00 42.06 2.32
161 162 3.803778 GTGACTGGAAACAAAGCAAATGG 59.196 43.478 0.00 0.00 42.06 3.16
162 163 3.703556 TGACTGGAAACAAAGCAAATGGA 59.296 39.130 0.00 0.00 42.06 3.41
163 164 4.161189 TGACTGGAAACAAAGCAAATGGAA 59.839 37.500 0.00 0.00 42.06 3.53
164 165 4.441792 ACTGGAAACAAAGCAAATGGAAC 58.558 39.130 0.00 0.00 42.06 3.62
165 166 4.162131 ACTGGAAACAAAGCAAATGGAACT 59.838 37.500 0.00 0.00 42.06 3.01
166 167 5.096443 TGGAAACAAAGCAAATGGAACTT 57.904 34.783 0.00 0.00 37.44 2.66
167 168 5.115480 TGGAAACAAAGCAAATGGAACTTC 58.885 37.500 0.00 0.00 37.44 3.01
168 169 4.209080 GGAAACAAAGCAAATGGAACTTCG 59.791 41.667 0.00 0.00 0.00 3.79
169 170 4.385358 AACAAAGCAAATGGAACTTCGT 57.615 36.364 0.00 0.00 0.00 3.85
170 171 4.385358 ACAAAGCAAATGGAACTTCGTT 57.615 36.364 0.00 0.00 0.00 3.85
171 172 5.508200 ACAAAGCAAATGGAACTTCGTTA 57.492 34.783 0.00 0.00 0.00 3.18
172 173 5.519722 ACAAAGCAAATGGAACTTCGTTAG 58.480 37.500 0.00 0.00 0.00 2.34
173 174 4.766404 AAGCAAATGGAACTTCGTTAGG 57.234 40.909 0.00 0.00 0.00 2.69
174 175 3.751518 AGCAAATGGAACTTCGTTAGGT 58.248 40.909 0.00 0.00 0.00 3.08
175 176 3.502211 AGCAAATGGAACTTCGTTAGGTG 59.498 43.478 0.00 0.00 0.00 4.00
176 177 3.821841 CAAATGGAACTTCGTTAGGTGC 58.178 45.455 0.00 0.00 31.46 5.01
177 178 3.418684 AATGGAACTTCGTTAGGTGCT 57.581 42.857 0.00 0.00 32.21 4.40
178 179 2.163818 TGGAACTTCGTTAGGTGCTG 57.836 50.000 0.00 0.00 32.21 4.41
179 180 1.689813 TGGAACTTCGTTAGGTGCTGA 59.310 47.619 0.00 0.00 32.21 4.26
180 181 2.288825 TGGAACTTCGTTAGGTGCTGAG 60.289 50.000 0.00 0.00 32.21 3.35
181 182 1.727335 GAACTTCGTTAGGTGCTGAGC 59.273 52.381 0.00 0.00 0.00 4.26
182 183 0.679505 ACTTCGTTAGGTGCTGAGCA 59.320 50.000 1.40 1.40 35.60 4.26
183 184 1.337260 ACTTCGTTAGGTGCTGAGCAG 60.337 52.381 7.71 0.00 40.08 4.24
184 185 0.966179 TTCGTTAGGTGCTGAGCAGA 59.034 50.000 7.71 0.00 40.08 4.26
185 186 0.966179 TCGTTAGGTGCTGAGCAGAA 59.034 50.000 7.71 0.00 40.08 3.02
186 187 1.067565 TCGTTAGGTGCTGAGCAGAAG 60.068 52.381 7.71 0.00 40.08 2.85
187 188 1.337260 CGTTAGGTGCTGAGCAGAAGT 60.337 52.381 7.71 0.00 40.08 3.01
188 189 2.772287 GTTAGGTGCTGAGCAGAAGTT 58.228 47.619 7.71 0.00 40.08 2.66
189 190 3.142174 GTTAGGTGCTGAGCAGAAGTTT 58.858 45.455 7.71 0.00 40.08 2.66
190 191 1.889545 AGGTGCTGAGCAGAAGTTTC 58.110 50.000 7.71 0.00 40.08 2.78
191 192 1.141657 AGGTGCTGAGCAGAAGTTTCA 59.858 47.619 7.71 0.00 40.08 2.69
192 193 1.949525 GGTGCTGAGCAGAAGTTTCAA 59.050 47.619 7.71 0.00 40.08 2.69
203 204 5.127682 AGCAGAAGTTTCAAACAAGTCCATT 59.872 36.000 2.41 0.00 0.00 3.16
205 206 7.014615 AGCAGAAGTTTCAAACAAGTCCATTAT 59.985 33.333 2.41 0.00 0.00 1.28
206 207 7.115378 GCAGAAGTTTCAAACAAGTCCATTATG 59.885 37.037 2.41 0.00 0.00 1.90
209 210 9.959749 GAAGTTTCAAACAAGTCCATTATGTAA 57.040 29.630 2.41 0.00 0.00 2.41
232 233 4.660789 AAAGAACATTGGCCATAGATGC 57.339 40.909 6.09 0.00 0.00 3.91
233 234 3.589951 AGAACATTGGCCATAGATGCT 57.410 42.857 6.09 0.00 0.00 3.79
234 235 3.484407 AGAACATTGGCCATAGATGCTC 58.516 45.455 6.09 8.80 0.00 4.26
235 236 3.117776 AGAACATTGGCCATAGATGCTCA 60.118 43.478 17.48 0.00 0.00 4.26
236 237 3.301794 ACATTGGCCATAGATGCTCAA 57.698 42.857 6.09 0.00 0.00 3.02
238 239 2.804986 TTGGCCATAGATGCTCAACA 57.195 45.000 6.09 0.00 0.00 3.33
242 243 0.578683 CCATAGATGCTCAACACGCG 59.421 55.000 3.53 3.53 0.00 6.01
243 244 1.280982 CATAGATGCTCAACACGCGT 58.719 50.000 5.58 5.58 0.00 6.01
244 245 2.459934 CATAGATGCTCAACACGCGTA 58.540 47.619 13.44 0.00 0.00 4.42
247 416 0.787787 GATGCTCAACACGCGTACAA 59.212 50.000 13.44 0.00 0.00 2.41
257 426 4.130857 GCGTACAAAAAGCGCCAG 57.869 55.556 2.29 0.00 44.67 4.85
272 441 0.036875 GCCAGTAACCCACTTGAGCT 59.963 55.000 0.00 0.00 34.26 4.09
275 444 2.154462 CAGTAACCCACTTGAGCTTGG 58.846 52.381 0.00 0.00 34.26 3.61
276 445 2.054799 AGTAACCCACTTGAGCTTGGA 58.945 47.619 3.60 0.00 31.59 3.53
282 452 3.070015 ACCCACTTGAGCTTGGATTTTTG 59.930 43.478 3.60 0.00 34.46 2.44
288 458 4.247267 TGAGCTTGGATTTTTGCTTCAG 57.753 40.909 0.00 0.00 35.76 3.02
292 462 3.811497 GCTTGGATTTTTGCTTCAGCTTT 59.189 39.130 0.00 0.00 42.66 3.51
299 469 2.869233 TTGCTTCAGCTTTTGTGGTC 57.131 45.000 0.00 0.00 42.66 4.02
302 472 2.099592 TGCTTCAGCTTTTGTGGTCAAG 59.900 45.455 0.00 0.00 42.66 3.02
305 475 4.543692 CTTCAGCTTTTGTGGTCAAGATG 58.456 43.478 0.00 0.00 37.69 2.90
307 477 2.295349 CAGCTTTTGTGGTCAAGATGCT 59.705 45.455 0.00 0.00 34.88 3.79
308 478 2.295349 AGCTTTTGTGGTCAAGATGCTG 59.705 45.455 0.00 0.00 34.88 4.41
314 484 0.111061 TGGTCAAGATGCTGCTTGGT 59.889 50.000 15.75 0.00 44.14 3.67
317 487 1.610522 GTCAAGATGCTGCTTGGTTGT 59.389 47.619 15.75 0.00 44.14 3.32
318 488 2.813754 GTCAAGATGCTGCTTGGTTGTA 59.186 45.455 15.75 0.00 44.14 2.41
322 492 1.470098 GATGCTGCTTGGTTGTACAGG 59.530 52.381 0.00 0.00 0.00 4.00
382 552 0.388520 TCTCACACGCATGACTTCCG 60.389 55.000 0.00 0.00 0.00 4.30
383 553 0.388520 CTCACACGCATGACTTCCGA 60.389 55.000 0.00 0.00 0.00 4.55
385 555 0.943835 CACACGCATGACTTCCGACA 60.944 55.000 0.00 0.00 0.00 4.35
391 561 2.417719 GCATGACTTCCGACAAAGACT 58.582 47.619 0.00 0.00 0.00 3.24
394 564 2.210116 TGACTTCCGACAAAGACTTGC 58.790 47.619 0.00 0.00 35.84 4.01
397 567 0.179067 TTCCGACAAAGACTTGCGGT 60.179 50.000 18.26 5.91 45.01 5.68
402 572 0.535102 ACAAAGACTTGCGGTCCAGG 60.535 55.000 6.10 0.00 45.54 4.45
407 577 1.906574 AGACTTGCGGTCCAGGATTTA 59.093 47.619 0.00 0.00 45.54 1.40
418 588 5.686387 CGGTCCAGGATTTATATTGACCACA 60.686 44.000 0.00 0.00 0.00 4.17
422 592 8.695456 GTCCAGGATTTATATTGACCACAATTT 58.305 33.333 0.00 0.00 43.17 1.82
437 608 8.865090 TGACCACAATTTAATGTTGATACCTTT 58.135 29.630 7.79 0.00 0.00 3.11
465 636 8.441311 TTCTACCATAGATAGAATTCCAGCAT 57.559 34.615 0.65 0.00 34.46 3.79
466 637 7.845037 TCTACCATAGATAGAATTCCAGCATG 58.155 38.462 0.65 0.34 0.00 4.06
489 660 6.742999 GGAGTTTTTCCAACAATTCGTTAC 57.257 37.500 0.00 0.00 46.01 2.50
490 661 5.397240 GGAGTTTTTCCAACAATTCGTTACG 59.603 40.000 0.00 0.00 46.01 3.18
492 663 6.196571 AGTTTTTCCAACAATTCGTTACGAG 58.803 36.000 7.69 0.00 37.14 4.18
493 664 5.738118 TTTTCCAACAATTCGTTACGAGT 57.262 34.783 7.69 1.49 37.14 4.18
494 665 4.977741 TTCCAACAATTCGTTACGAGTC 57.022 40.909 7.69 0.00 37.14 3.36
495 666 3.319755 TCCAACAATTCGTTACGAGTCC 58.680 45.455 7.69 0.00 37.14 3.85
496 667 3.061322 CCAACAATTCGTTACGAGTCCA 58.939 45.455 7.69 0.00 37.14 4.02
497 668 3.495377 CCAACAATTCGTTACGAGTCCAA 59.505 43.478 7.69 0.00 37.14 3.53
498 669 4.153475 CCAACAATTCGTTACGAGTCCAAT 59.847 41.667 7.69 0.00 37.14 3.16
499 670 5.334569 CCAACAATTCGTTACGAGTCCAATT 60.335 40.000 7.69 1.64 37.14 2.32
502 673 4.835199 ATTCGTTACGAGTCCAATTTCG 57.165 40.909 7.69 0.00 42.26 3.46
506 677 4.084952 TCGTTACGAGTCCAATTTCGTTTG 60.085 41.667 2.33 0.59 46.87 2.93
511 682 4.025145 ACGAGTCCAATTTCGTTTGTTCTC 60.025 41.667 0.00 0.00 46.87 2.87
515 686 4.970003 GTCCAATTTCGTTTGTTCTCTGTG 59.030 41.667 0.00 0.00 0.00 3.66
518 689 2.325583 TTCGTTTGTTCTCTGTGCCT 57.674 45.000 0.00 0.00 0.00 4.75
532 703 1.413445 TGTGCCTGCTGAAAAGCAAAT 59.587 42.857 1.61 0.00 44.88 2.32
538 710 3.129988 CCTGCTGAAAAGCAAATAGGGAG 59.870 47.826 1.61 0.00 44.88 4.30
555 727 9.785982 AAATAGGGAGACATTTTAGAGAATAGC 57.214 33.333 0.00 0.00 0.00 2.97
585 788 8.896744 AGACATATCACAATTGAATACAGGTTG 58.103 33.333 13.59 6.94 34.61 3.77
599 802 8.747471 TGAATACAGGTTGCATGATCAAATAAA 58.253 29.630 0.00 0.00 0.00 1.40
639 857 8.049117 AGATGCCATCAAATGAAAACTCTACTA 58.951 33.333 7.56 0.00 0.00 1.82
640 858 8.757982 ATGCCATCAAATGAAAACTCTACTAT 57.242 30.769 0.00 0.00 0.00 2.12
641 859 7.988737 TGCCATCAAATGAAAACTCTACTATG 58.011 34.615 0.00 0.00 0.00 2.23
658 876 9.729023 CTCTACTATGATGTTAACTCAAGTCTG 57.271 37.037 7.22 9.90 0.00 3.51
662 880 9.862371 ACTATGATGTTAACTCAAGTCTGTAAG 57.138 33.333 7.22 1.92 0.00 2.34
674 897 9.080097 ACTCAAGTCTGTAAGTAAGTTGTAGAT 57.920 33.333 0.00 0.00 33.76 1.98
679 902 8.895737 AGTCTGTAAGTAAGTTGTAGATAGAGC 58.104 37.037 0.00 0.00 33.76 4.09
687 910 4.372656 AGTTGTAGATAGAGCGGAATTGC 58.627 43.478 0.00 0.00 0.00 3.56
712 938 3.549412 TACGAGTAGGCGTACACCA 57.451 52.632 18.13 0.00 43.61 4.17
714 940 2.042686 ACGAGTAGGCGTACACCATA 57.957 50.000 18.13 0.00 43.61 2.74
718 944 3.480470 GAGTAGGCGTACACCATAGGTA 58.520 50.000 18.13 0.00 32.11 3.08
719 945 3.217626 AGTAGGCGTACACCATAGGTAC 58.782 50.000 18.13 0.00 38.16 3.34
736 964 2.745281 GGTACGCCTTCAATTGCTTGTA 59.255 45.455 0.00 0.00 33.87 2.41
758 986 5.988310 ATCATTTTTCAACAGGCATGAGA 57.012 34.783 4.84 0.00 0.00 3.27
762 990 7.046652 TCATTTTTCAACAGGCATGAGAAAAA 58.953 30.769 30.54 30.54 45.77 1.94
763 991 6.907206 TTTTTCAACAGGCATGAGAAAAAG 57.093 33.333 27.78 6.26 42.20 2.27
767 995 6.219417 TCAACAGGCATGAGAAAAAGAAAA 57.781 33.333 4.84 0.00 0.00 2.29
768 996 6.638610 TCAACAGGCATGAGAAAAAGAAAAA 58.361 32.000 4.84 0.00 0.00 1.94
788 1016 4.953940 AAAGAAAAATAGGCTGCCAACA 57.046 36.364 22.65 5.73 0.00 3.33
789 1017 3.942130 AGAAAAATAGGCTGCCAACAC 57.058 42.857 22.65 5.37 0.00 3.32
790 1018 3.500343 AGAAAAATAGGCTGCCAACACT 58.500 40.909 22.65 7.58 0.00 3.55
791 1019 3.256631 AGAAAAATAGGCTGCCAACACTG 59.743 43.478 22.65 0.00 0.00 3.66
807 1035 5.105756 CCAACACTGAAGAAGAAAAACAGGT 60.106 40.000 0.00 0.00 33.57 4.00
858 1089 4.082517 TGCTAGCATCCGAAGAGCTAATAG 60.083 45.833 14.93 0.00 40.05 1.73
859 1090 3.951775 AGCATCCGAAGAGCTAATAGG 57.048 47.619 0.00 0.00 36.73 2.57
862 1093 3.803715 GCATCCGAAGAGCTAATAGGCAA 60.804 47.826 0.00 0.00 34.17 4.52
867 1098 2.629336 AGAGCTAATAGGCAACCAGC 57.371 50.000 0.00 0.00 44.65 4.85
868 1099 2.122768 AGAGCTAATAGGCAACCAGCT 58.877 47.619 3.76 3.76 44.95 4.24
873 1104 0.032813 AATAGGCAACCAGCTGGCAT 60.033 50.000 33.06 19.29 44.08 4.40
875 1106 0.181114 TAGGCAACCAGCTGGCATAG 59.819 55.000 33.06 19.76 44.08 2.23
876 1107 1.077501 GGCAACCAGCTGGCATAGA 60.078 57.895 33.06 0.00 44.79 1.98
877 1108 0.466922 GGCAACCAGCTGGCATAGAT 60.467 55.000 33.06 9.33 44.79 1.98
878 1109 1.202806 GGCAACCAGCTGGCATAGATA 60.203 52.381 33.06 0.00 44.79 1.98
879 1110 2.553904 GGCAACCAGCTGGCATAGATAT 60.554 50.000 33.06 7.63 44.79 1.63
885 1116 3.199289 CCAGCTGGCATAGATATGATGGA 59.801 47.826 22.33 0.00 35.75 3.41
888 1119 4.781621 AGCTGGCATAGATATGATGGAGAA 59.218 41.667 4.01 0.00 35.75 2.87
902 1133 5.300752 TGATGGAGAAAGACACTGAAGAAC 58.699 41.667 0.00 0.00 0.00 3.01
927 1201 6.647067 CAGAGGACCTCAAAACACTAGTTAAG 59.353 42.308 23.60 0.00 32.68 1.85
973 2731 4.504689 GCTGAATCAAATCCCCAACCAAAA 60.505 41.667 0.00 0.00 0.00 2.44
1006 2764 0.901580 ACCAGGCAGCAAAATGGGAG 60.902 55.000 9.30 0.00 37.13 4.30
1103 2864 1.070445 GCCATGGAGGGATCTCACG 59.930 63.158 18.40 0.00 41.69 4.35
1107 2868 0.558220 ATGGAGGGATCTCACGGAGA 59.442 55.000 0.00 6.14 43.20 3.71
1116 2877 2.109425 TCTCACGGAGATCTCAACGA 57.891 50.000 23.85 14.44 33.35 3.85
1192 2953 1.410153 CTTGGCAGGAAAACACAAGCT 59.590 47.619 0.00 0.00 33.12 3.74
1193 2954 1.484038 TGGCAGGAAAACACAAGCTT 58.516 45.000 0.00 0.00 0.00 3.74
1208 2969 1.891919 GCTTGTGCAACTGGACGGA 60.892 57.895 0.00 0.00 39.39 4.69
1675 3436 4.098196 GCGGCATAATACCAAAAACCCTTA 59.902 41.667 0.00 0.00 0.00 2.69
1926 3687 6.862711 AAGCTAAACCAACTTGTTCTCTAC 57.137 37.500 0.00 0.00 0.00 2.59
1927 3688 5.925509 AGCTAAACCAACTTGTTCTCTACA 58.074 37.500 0.00 0.00 34.12 2.74
1930 3691 7.338449 AGCTAAACCAACTTGTTCTCTACAAAA 59.662 33.333 0.00 0.00 45.69 2.44
1931 3692 7.971722 GCTAAACCAACTTGTTCTCTACAAAAA 59.028 33.333 0.00 0.00 45.69 1.94
1933 3694 8.926715 AAACCAACTTGTTCTCTACAAAAATC 57.073 30.769 0.00 0.00 45.69 2.17
1934 3695 7.639113 ACCAACTTGTTCTCTACAAAAATCA 57.361 32.000 0.00 0.00 45.69 2.57
1935 3696 8.062065 ACCAACTTGTTCTCTACAAAAATCAA 57.938 30.769 0.00 0.00 45.69 2.57
1936 3697 8.527810 ACCAACTTGTTCTCTACAAAAATCAAA 58.472 29.630 0.00 0.00 45.69 2.69
1937 3698 9.533253 CCAACTTGTTCTCTACAAAAATCAAAT 57.467 29.630 0.00 0.00 45.69 2.32
1963 3724 4.152284 GGTTCAATACCCCCAGAACTAG 57.848 50.000 0.00 0.00 41.43 2.57
1964 3725 3.118000 GGTTCAATACCCCCAGAACTAGG 60.118 52.174 0.00 0.00 41.43 3.02
1985 3746 4.133013 GGAACCTCGCTATTCTAAACCA 57.867 45.455 0.00 0.00 0.00 3.67
1986 3747 4.510571 GGAACCTCGCTATTCTAAACCAA 58.489 43.478 0.00 0.00 0.00 3.67
1987 3748 4.331992 GGAACCTCGCTATTCTAAACCAAC 59.668 45.833 0.00 0.00 0.00 3.77
1988 3749 4.820894 ACCTCGCTATTCTAAACCAACT 57.179 40.909 0.00 0.00 0.00 3.16
1989 3750 5.161943 ACCTCGCTATTCTAAACCAACTT 57.838 39.130 0.00 0.00 0.00 2.66
1990 3751 4.935808 ACCTCGCTATTCTAAACCAACTTG 59.064 41.667 0.00 0.00 0.00 3.16
1991 3752 5.175859 CCTCGCTATTCTAAACCAACTTGA 58.824 41.667 0.00 0.00 0.00 3.02
1992 3753 5.642063 CCTCGCTATTCTAAACCAACTTGAA 59.358 40.000 0.00 0.00 0.00 2.69
1993 3754 6.402226 CCTCGCTATTCTAAACCAACTTGAAC 60.402 42.308 0.00 0.00 0.00 3.18
1994 3755 6.228258 TCGCTATTCTAAACCAACTTGAACT 58.772 36.000 0.00 0.00 0.00 3.01
1995 3756 6.367969 TCGCTATTCTAAACCAACTTGAACTC 59.632 38.462 0.00 0.00 0.00 3.01
1996 3757 6.369065 CGCTATTCTAAACCAACTTGAACTCT 59.631 38.462 0.00 0.00 0.00 3.24
1997 3758 7.544566 CGCTATTCTAAACCAACTTGAACTCTA 59.455 37.037 0.00 0.00 0.00 2.43
1998 3759 9.384764 GCTATTCTAAACCAACTTGAACTCTAT 57.615 33.333 0.00 0.00 0.00 1.98
2037 3798 8.314361 CTGGTTCAATACTCCCAGAACTAGGG 62.314 50.000 8.93 0.00 45.97 3.53
2047 3808 4.399004 CCAGAACTAGGGAATCTCACTG 57.601 50.000 0.00 0.00 29.55 3.66
2052 3813 2.763448 ACTAGGGAATCTCACTGTGCTC 59.237 50.000 2.12 0.00 29.55 4.26
2055 3816 2.575279 AGGGAATCTCACTGTGCTCAAT 59.425 45.455 2.12 0.00 0.00 2.57
2161 4498 6.479990 TCTCTATACAAATGAAATCACAGGCG 59.520 38.462 0.00 0.00 0.00 5.52
2196 4605 9.639563 TTAGAATTGGGCATGTTATTGAATCTA 57.360 29.630 0.00 0.00 0.00 1.98
2458 5011 4.354087 ACTCATTTTCAGGACCTTTACCCT 59.646 41.667 0.00 0.00 0.00 4.34
2802 5367 7.033530 ACTAAGACTCGATTCTAACCATCTG 57.966 40.000 5.64 0.00 0.00 2.90
2841 5406 5.068987 ACCAGAAATCTGCACTTTAGCAAAA 59.931 36.000 4.87 0.00 45.13 2.44
3032 5600 2.616842 ACAACTTTAGTGGGAGTTTGCG 59.383 45.455 0.00 0.00 34.04 4.85
3060 5629 3.882888 CGATTGGAAATTTAGCAGGCCTA 59.117 43.478 3.98 0.00 0.00 3.93
3063 5632 4.040936 TGGAAATTTAGCAGGCCTACAA 57.959 40.909 3.98 0.00 0.00 2.41
3098 5667 3.815401 GTGAGCAACAATAACCTCAGTGT 59.185 43.478 0.00 0.00 35.23 3.55
3100 5669 4.515191 TGAGCAACAATAACCTCAGTGTTC 59.485 41.667 0.00 0.00 34.72 3.18
3171 5740 3.885724 TCACATAATCAGTTCAGCGGA 57.114 42.857 0.00 0.00 0.00 5.54
3357 5926 5.221843 ACCTTGTTATTCAACTCCAGTAGCA 60.222 40.000 0.00 0.00 35.56 3.49
3383 5952 2.812011 ACCATAAACGGAAGACACTTGC 59.188 45.455 0.00 0.00 0.00 4.01
3419 5988 4.873746 TTGTTCTTGTTGTGGGTTTCAA 57.126 36.364 0.00 0.00 0.00 2.69
3438 6007 1.515081 ACATTGTTGCTGCAATTGCC 58.485 45.000 26.94 13.43 41.18 4.52
3462 6031 7.063074 GCCGTCATAATAATGCTTAGTCGTAAT 59.937 37.037 0.00 0.00 32.76 1.89
3639 6208 1.070786 GGCACAACTCCAAGACGGA 59.929 57.895 0.00 0.00 43.61 4.69
3705 6280 6.486657 AGTTGGATGACGAAAGAAGATTTCAA 59.513 34.615 0.00 0.00 0.00 2.69
3859 6434 2.770164 TGAGGAGCTAGCAAAGGAAC 57.230 50.000 18.83 2.17 0.00 3.62
3879 6454 6.613271 AGGAACTAGATTGGCAGAAGAGAATA 59.387 38.462 0.00 0.00 36.02 1.75
3975 6550 7.096844 CGAGATATCACGAGTAACAACATCTTG 60.097 40.741 16.36 0.00 31.68 3.02
3992 6567 7.798596 ACATCTTGCTTGATATAACCTTCAG 57.201 36.000 0.00 0.00 0.00 3.02
4150 6731 6.808008 TTCATCTCAGTTCATTTGTTCCTC 57.192 37.500 0.00 0.00 0.00 3.71
4243 6832 3.206150 CTTTGGCGTGGTTATGCTAGAT 58.794 45.455 0.00 0.00 38.87 1.98
4255 6844 5.717178 GGTTATGCTAGATCTAGTGATGGGA 59.283 44.000 26.73 6.38 35.65 4.37
4281 6870 6.856757 AGCATCCAAGGGATAAATTAGACAT 58.143 36.000 0.00 0.00 40.98 3.06
4296 6885 2.778299 AGACATTAGTTTGCCAAGCGA 58.222 42.857 0.00 0.00 0.00 4.93
4310 6899 2.744202 CCAAGCGAGAAACAAGCTATGT 59.256 45.455 0.00 0.00 46.82 2.29
4345 6934 1.895231 GGACCAACGACCAACCACC 60.895 63.158 0.00 0.00 0.00 4.61
4353 6942 0.825840 CGACCAACCACCCCAACAAT 60.826 55.000 0.00 0.00 0.00 2.71
4429 7018 1.580845 CTTCTCCACAAGCAAGGCCG 61.581 60.000 0.00 0.00 0.00 6.13
4471 7088 2.648059 ACACTCATATGCCTTTCAGCC 58.352 47.619 0.00 0.00 0.00 4.85
4497 7114 7.336931 CCACTTACATTACAGCAAGTAAAGGAT 59.663 37.037 5.96 0.00 45.25 3.24
4498 7115 8.177663 CACTTACATTACAGCAAGTAAAGGATG 58.822 37.037 5.96 4.18 45.25 3.51
4499 7116 5.567138 ACATTACAGCAAGTAAAGGATGC 57.433 39.130 5.96 0.00 45.25 3.91
4500 7117 5.009631 ACATTACAGCAAGTAAAGGATGCA 58.990 37.500 5.96 0.00 45.25 3.96
4501 7118 5.653769 ACATTACAGCAAGTAAAGGATGCAT 59.346 36.000 0.00 0.00 45.25 3.96
4502 7119 5.565592 TTACAGCAAGTAAAGGATGCATG 57.434 39.130 2.46 0.00 42.45 4.06
4503 7120 3.424703 ACAGCAAGTAAAGGATGCATGT 58.575 40.909 2.46 0.00 42.45 3.21
4504 7121 3.828451 ACAGCAAGTAAAGGATGCATGTT 59.172 39.130 2.46 0.00 42.45 2.71
4505 7122 4.171005 CAGCAAGTAAAGGATGCATGTTG 58.829 43.478 2.46 0.00 42.45 3.33
4506 7123 3.194116 AGCAAGTAAAGGATGCATGTTGG 59.806 43.478 2.46 0.00 42.45 3.77
4579 7211 5.571357 CCGATTTATGTTTCCGTTTTTCCTG 59.429 40.000 0.00 0.00 0.00 3.86
4643 7277 6.018589 TCCATTCATGTCATCTCGTAGATC 57.981 41.667 0.00 0.00 31.32 2.75
4652 7286 9.689976 CATGTCATCTCGTAGATCTTATTTCTT 57.310 33.333 0.00 0.00 31.32 2.52
4679 7314 1.540267 TAAAAACCGGTCCATGCAGG 58.460 50.000 8.04 0.00 39.47 4.85
4812 7464 1.236616 CGTGAAGCTTGGTCATGGCA 61.237 55.000 2.10 0.00 0.00 4.92
4914 7570 1.983160 GCTTTACGCAGCGCAAATG 59.017 52.632 16.61 12.66 38.92 2.32
4918 7574 1.917782 TTACGCAGCGCAAATGTCCC 61.918 55.000 16.61 0.00 0.00 4.46
4919 7575 2.796483 TACGCAGCGCAAATGTCCCT 62.796 55.000 16.61 0.00 0.00 4.20
4952 7608 6.894103 ACTAATTCTTCTACCTCCCGTTTCTA 59.106 38.462 0.00 0.00 0.00 2.10
4954 7610 3.359950 TCTTCTACCTCCCGTTTCTACC 58.640 50.000 0.00 0.00 0.00 3.18
4961 7617 1.072648 CTCCCGTTTCTACCCCAACAA 59.927 52.381 0.00 0.00 0.00 2.83
4962 7618 1.706305 TCCCGTTTCTACCCCAACAAT 59.294 47.619 0.00 0.00 0.00 2.71
4963 7619 2.911636 TCCCGTTTCTACCCCAACAATA 59.088 45.455 0.00 0.00 0.00 1.90
4964 7620 3.524380 TCCCGTTTCTACCCCAACAATAT 59.476 43.478 0.00 0.00 0.00 1.28
4990 7646 2.814805 ACCTTGGGATGAGTTGATGG 57.185 50.000 0.00 0.00 0.00 3.51
5008 7664 5.614308 TGATGGCTCATTGTAAGTCTATGG 58.386 41.667 0.00 0.00 31.92 2.74
5035 7691 9.562408 CTTTGTAGATACTCTCCTGATACAGTA 57.438 37.037 0.00 0.00 0.00 2.74
5046 7702 5.902681 TCCTGATACAGTAAAAGATCACCG 58.097 41.667 0.00 0.00 0.00 4.94
5048 7704 5.749109 CCTGATACAGTAAAAGATCACCGTC 59.251 44.000 0.00 0.00 0.00 4.79
5068 7724 2.151202 CGTGTGCCTGTGTTATTTCCT 58.849 47.619 0.00 0.00 0.00 3.36
5095 7751 5.775686 AGGGTTTTCCACGTAAAAATTAGC 58.224 37.500 10.21 1.09 42.91 3.09
5100 7756 6.783892 TTTCCACGTAAAAATTAGCGTACT 57.216 33.333 0.00 0.00 35.71 2.73
5115 7771 7.987268 TTAGCGTACTGTCTTCTTGATATTG 57.013 36.000 0.00 0.00 0.00 1.90
5136 7792 9.693739 ATATTGTTCATATGTGTTTACTTCCCA 57.306 29.630 1.90 0.00 0.00 4.37
5183 7842 2.159170 TGTTTGGCTGGTTGCTTGTAAC 60.159 45.455 0.00 0.00 42.39 2.50
5195 7854 5.413213 GGTTGCTTGTAACATGTATGTGGTA 59.587 40.000 0.00 0.00 41.61 3.25
5280 7939 2.879103 AGGGTACTTGGAATGGTGTG 57.121 50.000 0.00 0.00 0.00 3.82
5286 7947 4.461081 GGTACTTGGAATGGTGTGCAAATA 59.539 41.667 0.00 0.00 0.00 1.40
5321 7982 1.021968 ACTTTTGCTCCCACGAACAC 58.978 50.000 0.00 0.00 0.00 3.32
5324 7985 0.462225 TTTGCTCCCACGAACACGAA 60.462 50.000 0.00 0.00 0.00 3.85
5325 7986 1.155424 TTGCTCCCACGAACACGAAC 61.155 55.000 0.00 0.00 0.00 3.95
5326 7987 1.593209 GCTCCCACGAACACGAACA 60.593 57.895 0.00 0.00 0.00 3.18
5357 8020 8.606040 AAAAATGTAATCCAAAACTGTCATGG 57.394 30.769 5.67 5.67 35.49 3.66
5359 8022 5.703978 TGTAATCCAAAACTGTCATGGTG 57.296 39.130 10.49 0.00 35.66 4.17
5367 8030 6.322456 TCCAAAACTGTCATGGTGTCATTTAA 59.678 34.615 10.49 0.00 35.66 1.52
5391 8054 4.685924 TCCGATTTATTGTTCTACGGGAC 58.314 43.478 0.00 0.00 39.44 4.46
5411 8074 6.424032 GGGACTCAAAGTAAAATACCCTGAT 58.576 40.000 0.00 0.00 32.93 2.90
5414 8077 7.065923 GGACTCAAAGTAAAATACCCTGATCAC 59.934 40.741 0.00 0.00 0.00 3.06
5456 8119 1.948834 CAAGTGGTCAATGTGCAGACA 59.051 47.619 6.21 0.00 36.50 3.41
5479 8142 3.911964 AGAACAAATGAATGTAAACGCGC 59.088 39.130 5.73 0.00 32.02 6.86
5483 8146 0.372334 ATGAATGTAAACGCGCGGAC 59.628 50.000 35.22 26.79 0.00 4.79
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
0 1 2.781957 CGCGCGCACTAATTGGAA 59.218 55.556 32.61 0.00 0.00 3.53
1 2 3.860125 GCGCGCGCACTAATTGGA 61.860 61.111 46.11 0.00 41.49 3.53
12 13 3.957027 TACAGTACAGTGGCGCGCG 62.957 63.158 28.44 28.44 0.00 6.86
15 16 1.810030 GCCTACAGTACAGTGGCGC 60.810 63.158 13.24 0.00 33.96 6.53
16 17 0.175760 ATGCCTACAGTACAGTGGCG 59.824 55.000 19.30 6.62 45.90 5.69
17 18 1.656652 CATGCCTACAGTACAGTGGC 58.343 55.000 18.43 18.43 43.49 5.01
18 19 1.066215 TGCATGCCTACAGTACAGTGG 60.066 52.381 16.68 0.00 0.00 4.00
19 20 2.274437 CTGCATGCCTACAGTACAGTG 58.726 52.381 16.68 0.00 0.00 3.66
21 22 1.293924 GCTGCATGCCTACAGTACAG 58.706 55.000 16.68 3.20 36.26 2.74
32 33 0.249741 GATGAATTGGGGCTGCATGC 60.250 55.000 11.82 11.82 41.94 4.06
33 34 0.391597 GGATGAATTGGGGCTGCATG 59.608 55.000 0.50 0.00 0.00 4.06
34 35 0.263765 AGGATGAATTGGGGCTGCAT 59.736 50.000 0.50 0.00 0.00 3.96
35 36 0.396139 GAGGATGAATTGGGGCTGCA 60.396 55.000 0.50 0.00 0.00 4.41
36 37 1.111715 GGAGGATGAATTGGGGCTGC 61.112 60.000 0.00 0.00 0.00 5.25
37 38 0.554792 AGGAGGATGAATTGGGGCTG 59.445 55.000 0.00 0.00 0.00 4.85
38 39 0.554792 CAGGAGGATGAATTGGGGCT 59.445 55.000 0.00 0.00 0.00 5.19
39 40 1.111715 GCAGGAGGATGAATTGGGGC 61.112 60.000 0.00 0.00 0.00 5.80
40 41 0.259647 TGCAGGAGGATGAATTGGGG 59.740 55.000 0.00 0.00 0.00 4.96
42 43 2.133281 TGTGCAGGAGGATGAATTGG 57.867 50.000 0.00 0.00 0.00 3.16
43 44 2.159282 GCTTGTGCAGGAGGATGAATTG 60.159 50.000 0.00 0.00 39.41 2.32
44 45 2.097825 GCTTGTGCAGGAGGATGAATT 58.902 47.619 0.00 0.00 39.41 2.17
45 46 1.760192 GCTTGTGCAGGAGGATGAAT 58.240 50.000 0.00 0.00 39.41 2.57
49 50 2.437359 GCGCTTGTGCAGGAGGAT 60.437 61.111 0.00 0.00 39.64 3.24
50 51 3.939939 TGCGCTTGTGCAGGAGGA 61.940 61.111 9.73 0.00 40.62 3.71
69 70 3.132646 TGTCTGATTTGGTGCTTGCTTTT 59.867 39.130 0.00 0.00 0.00 2.27
70 71 2.694628 TGTCTGATTTGGTGCTTGCTTT 59.305 40.909 0.00 0.00 0.00 3.51
72 73 1.985473 TGTCTGATTTGGTGCTTGCT 58.015 45.000 0.00 0.00 0.00 3.91
73 74 2.798976 TTGTCTGATTTGGTGCTTGC 57.201 45.000 0.00 0.00 0.00 4.01
74 75 3.492011 GCTTTTGTCTGATTTGGTGCTTG 59.508 43.478 0.00 0.00 0.00 4.01
75 76 3.132646 TGCTTTTGTCTGATTTGGTGCTT 59.867 39.130 0.00 0.00 0.00 3.91
76 77 2.694628 TGCTTTTGTCTGATTTGGTGCT 59.305 40.909 0.00 0.00 0.00 4.40
77 78 3.096489 TGCTTTTGTCTGATTTGGTGC 57.904 42.857 0.00 0.00 0.00 5.01
78 79 3.492011 GCTTGCTTTTGTCTGATTTGGTG 59.508 43.478 0.00 0.00 0.00 4.17
79 80 3.385755 AGCTTGCTTTTGTCTGATTTGGT 59.614 39.130 0.00 0.00 0.00 3.67
80 81 3.739300 CAGCTTGCTTTTGTCTGATTTGG 59.261 43.478 0.00 0.00 0.00 3.28
81 82 4.613944 TCAGCTTGCTTTTGTCTGATTTG 58.386 39.130 0.00 0.00 0.00 2.32
82 83 4.795308 GCTCAGCTTGCTTTTGTCTGATTT 60.795 41.667 0.00 0.00 33.86 2.17
83 84 3.305199 GCTCAGCTTGCTTTTGTCTGATT 60.305 43.478 0.00 0.00 33.86 2.57
85 86 1.605710 GCTCAGCTTGCTTTTGTCTGA 59.394 47.619 0.00 0.00 33.35 3.27
86 87 1.335810 TGCTCAGCTTGCTTTTGTCTG 59.664 47.619 0.00 0.00 0.00 3.51
88 89 2.497107 TTGCTCAGCTTGCTTTTGTC 57.503 45.000 0.00 0.00 0.00 3.18
89 90 2.965572 TTTGCTCAGCTTGCTTTTGT 57.034 40.000 0.00 0.00 0.00 2.83
93 94 1.335145 ACCATTTGCTCAGCTTGCTT 58.665 45.000 0.00 0.00 0.00 3.91
95 96 1.000060 TCAACCATTTGCTCAGCTTGC 60.000 47.619 0.00 1.77 32.17 4.01
96 97 2.555325 TCTCAACCATTTGCTCAGCTTG 59.445 45.455 0.00 0.00 32.17 4.01
97 98 2.818432 CTCTCAACCATTTGCTCAGCTT 59.182 45.455 0.00 0.00 32.17 3.74
100 101 3.405831 TGTCTCTCAACCATTTGCTCAG 58.594 45.455 0.00 0.00 32.17 3.35
101 102 3.490439 TGTCTCTCAACCATTTGCTCA 57.510 42.857 0.00 0.00 32.17 4.26
102 103 3.365767 GCTTGTCTCTCAACCATTTGCTC 60.366 47.826 0.00 0.00 32.17 4.26
103 104 2.555757 GCTTGTCTCTCAACCATTTGCT 59.444 45.455 0.00 0.00 32.17 3.91
104 105 2.555757 AGCTTGTCTCTCAACCATTTGC 59.444 45.455 0.00 0.00 32.17 3.68
105 106 4.843220 AAGCTTGTCTCTCAACCATTTG 57.157 40.909 0.00 0.00 32.18 2.32
107 108 5.006386 CCTAAAGCTTGTCTCTCAACCATT 58.994 41.667 0.00 0.00 32.18 3.16
108 109 4.583871 CCTAAAGCTTGTCTCTCAACCAT 58.416 43.478 0.00 0.00 32.18 3.55
110 111 2.744741 GCCTAAAGCTTGTCTCTCAACC 59.255 50.000 0.00 0.00 38.99 3.77
111 112 3.403038 TGCCTAAAGCTTGTCTCTCAAC 58.597 45.455 0.00 0.00 44.23 3.18
112 113 3.769739 TGCCTAAAGCTTGTCTCTCAA 57.230 42.857 0.00 0.00 44.23 3.02
113 114 3.988976 ATGCCTAAAGCTTGTCTCTCA 57.011 42.857 0.00 0.00 44.23 3.27
114 115 4.094146 GTGAATGCCTAAAGCTTGTCTCTC 59.906 45.833 0.00 0.00 44.23 3.20
116 117 3.753272 TGTGAATGCCTAAAGCTTGTCTC 59.247 43.478 0.00 0.00 44.23 3.36
117 118 3.754965 TGTGAATGCCTAAAGCTTGTCT 58.245 40.909 0.00 0.00 44.23 3.41
118 119 3.503748 ACTGTGAATGCCTAAAGCTTGTC 59.496 43.478 0.00 0.00 44.23 3.18
120 121 3.503363 TCACTGTGAATGCCTAAAGCTTG 59.497 43.478 8.27 0.00 44.23 4.01
121 122 3.503748 GTCACTGTGAATGCCTAAAGCTT 59.496 43.478 12.81 0.00 44.23 3.74
122 123 3.077359 GTCACTGTGAATGCCTAAAGCT 58.923 45.455 12.81 0.00 44.23 3.74
123 124 3.077359 AGTCACTGTGAATGCCTAAAGC 58.923 45.455 12.81 0.00 44.14 3.51
124 125 3.438087 CCAGTCACTGTGAATGCCTAAAG 59.562 47.826 27.48 12.63 40.73 1.85
127 128 2.256306 TCCAGTCACTGTGAATGCCTA 58.744 47.619 27.48 14.91 40.73 3.93
128 129 1.059098 TCCAGTCACTGTGAATGCCT 58.941 50.000 27.48 11.94 40.73 4.75
129 130 1.896220 TTCCAGTCACTGTGAATGCC 58.104 50.000 27.48 9.92 40.73 4.40
134 135 2.682856 GCTTTGTTTCCAGTCACTGTGA 59.317 45.455 6.36 6.36 0.00 3.58
136 137 2.722094 TGCTTTGTTTCCAGTCACTGT 58.278 42.857 3.56 0.00 0.00 3.55
137 138 3.781079 TTGCTTTGTTTCCAGTCACTG 57.219 42.857 0.00 0.00 0.00 3.66
138 139 4.441913 CCATTTGCTTTGTTTCCAGTCACT 60.442 41.667 0.00 0.00 0.00 3.41
139 140 3.803778 CCATTTGCTTTGTTTCCAGTCAC 59.196 43.478 0.00 0.00 0.00 3.67
140 141 3.703556 TCCATTTGCTTTGTTTCCAGTCA 59.296 39.130 0.00 0.00 0.00 3.41
141 142 4.320608 TCCATTTGCTTTGTTTCCAGTC 57.679 40.909 0.00 0.00 0.00 3.51
142 143 4.162131 AGTTCCATTTGCTTTGTTTCCAGT 59.838 37.500 0.00 0.00 0.00 4.00
144 145 4.751767 AGTTCCATTTGCTTTGTTTCCA 57.248 36.364 0.00 0.00 0.00 3.53
145 146 4.209080 CGAAGTTCCATTTGCTTTGTTTCC 59.791 41.667 0.00 0.00 0.00 3.13
148 149 4.385358 ACGAAGTTCCATTTGCTTTGTT 57.615 36.364 0.00 0.00 37.78 2.83
160 161 5.963892 TGCTCAGCACCTAACGAAGTTCC 62.964 52.174 0.00 0.00 42.05 3.62
161 162 2.866460 TGCTCAGCACCTAACGAAGTTC 60.866 50.000 0.00 0.00 42.05 3.01
162 163 1.070134 TGCTCAGCACCTAACGAAGTT 59.930 47.619 0.00 0.00 44.42 2.66
163 164 0.679505 TGCTCAGCACCTAACGAAGT 59.320 50.000 0.00 0.00 35.99 3.01
164 165 1.067565 TCTGCTCAGCACCTAACGAAG 60.068 52.381 0.00 0.00 33.79 3.79
165 166 0.966179 TCTGCTCAGCACCTAACGAA 59.034 50.000 0.00 0.00 33.79 3.85
166 167 0.966179 TTCTGCTCAGCACCTAACGA 59.034 50.000 0.00 0.00 33.79 3.85
167 168 1.337260 ACTTCTGCTCAGCACCTAACG 60.337 52.381 0.00 0.00 33.79 3.18
168 169 2.464157 ACTTCTGCTCAGCACCTAAC 57.536 50.000 0.00 0.00 33.79 2.34
169 170 3.181455 TGAAACTTCTGCTCAGCACCTAA 60.181 43.478 0.00 0.00 33.79 2.69
170 171 2.368548 TGAAACTTCTGCTCAGCACCTA 59.631 45.455 0.00 0.00 33.79 3.08
171 172 1.141657 TGAAACTTCTGCTCAGCACCT 59.858 47.619 0.00 0.00 33.79 4.00
172 173 1.597742 TGAAACTTCTGCTCAGCACC 58.402 50.000 0.00 0.00 33.79 5.01
173 174 3.181497 TGTTTGAAACTTCTGCTCAGCAC 60.181 43.478 9.69 0.00 33.79 4.40
174 175 3.016031 TGTTTGAAACTTCTGCTCAGCA 58.984 40.909 9.69 0.00 36.92 4.41
175 176 3.698029 TGTTTGAAACTTCTGCTCAGC 57.302 42.857 9.69 0.00 0.00 4.26
176 177 5.240713 ACTTGTTTGAAACTTCTGCTCAG 57.759 39.130 9.69 0.00 0.00 3.35
177 178 4.096382 GGACTTGTTTGAAACTTCTGCTCA 59.904 41.667 9.69 0.00 0.00 4.26
178 179 4.096382 TGGACTTGTTTGAAACTTCTGCTC 59.904 41.667 9.69 0.00 0.00 4.26
179 180 4.016444 TGGACTTGTTTGAAACTTCTGCT 58.984 39.130 9.69 0.00 0.00 4.24
180 181 4.370364 TGGACTTGTTTGAAACTTCTGC 57.630 40.909 9.69 0.00 0.00 4.26
181 182 8.137437 ACATAATGGACTTGTTTGAAACTTCTG 58.863 33.333 9.69 0.00 0.00 3.02
182 183 8.237811 ACATAATGGACTTGTTTGAAACTTCT 57.762 30.769 9.69 0.00 0.00 2.85
183 184 9.959749 TTACATAATGGACTTGTTTGAAACTTC 57.040 29.630 9.69 3.42 0.00 3.01
209 210 5.188359 AGCATCTATGGCCAATGTTCTTTTT 59.812 36.000 10.96 0.00 0.00 1.94
210 211 4.713321 AGCATCTATGGCCAATGTTCTTTT 59.287 37.500 10.96 0.00 0.00 2.27
212 213 3.887716 GAGCATCTATGGCCAATGTTCTT 59.112 43.478 19.83 2.16 30.66 2.52
213 214 3.117776 TGAGCATCTATGGCCAATGTTCT 60.118 43.478 24.53 12.67 33.40 3.01
214 215 3.216800 TGAGCATCTATGGCCAATGTTC 58.783 45.455 20.14 20.14 34.92 3.18
217 218 2.953648 TGTTGAGCATCTATGGCCAATG 59.046 45.455 10.96 10.98 34.92 2.82
218 219 2.954318 GTGTTGAGCATCTATGGCCAAT 59.046 45.455 10.96 0.00 34.92 3.16
219 220 2.368439 GTGTTGAGCATCTATGGCCAA 58.632 47.619 10.96 0.00 34.92 4.52
220 221 1.743431 CGTGTTGAGCATCTATGGCCA 60.743 52.381 8.56 8.56 34.92 5.36
222 223 0.305922 GCGTGTTGAGCATCTATGGC 59.694 55.000 0.00 0.00 34.92 4.40
223 224 0.578683 CGCGTGTTGAGCATCTATGG 59.421 55.000 0.00 0.00 34.92 2.74
224 225 1.280982 ACGCGTGTTGAGCATCTATG 58.719 50.000 12.93 0.00 34.92 2.23
225 226 2.159296 TGTACGCGTGTTGAGCATCTAT 60.159 45.455 24.59 0.00 34.92 1.98
228 229 0.787787 TTGTACGCGTGTTGAGCATC 59.212 50.000 24.59 1.55 34.19 3.91
229 230 1.222300 TTTGTACGCGTGTTGAGCAT 58.778 45.000 24.59 0.00 34.19 3.79
230 231 1.007580 TTTTGTACGCGTGTTGAGCA 58.992 45.000 24.59 8.10 34.19 4.26
231 232 2.034076 CTTTTTGTACGCGTGTTGAGC 58.966 47.619 24.59 5.46 0.00 4.26
232 233 2.034076 GCTTTTTGTACGCGTGTTGAG 58.966 47.619 24.59 12.79 0.00 3.02
233 234 1.592590 CGCTTTTTGTACGCGTGTTGA 60.593 47.619 24.59 0.00 41.78 3.18
234 235 0.761932 CGCTTTTTGTACGCGTGTTG 59.238 50.000 24.59 5.96 41.78 3.33
235 236 3.136800 CGCTTTTTGTACGCGTGTT 57.863 47.368 24.59 0.00 41.78 3.32
236 237 4.884901 CGCTTTTTGTACGCGTGT 57.115 50.000 24.59 6.91 41.78 4.49
242 243 2.351060 GGGTTACTGGCGCTTTTTGTAC 60.351 50.000 7.64 0.00 0.00 2.90
243 244 1.881324 GGGTTACTGGCGCTTTTTGTA 59.119 47.619 7.64 0.93 0.00 2.41
244 245 0.671796 GGGTTACTGGCGCTTTTTGT 59.328 50.000 7.64 1.94 0.00 2.83
247 416 0.179001 AGTGGGTTACTGGCGCTTTT 60.179 50.000 7.64 0.00 38.49 2.27
257 426 2.561478 TCCAAGCTCAAGTGGGTTAC 57.439 50.000 2.34 0.00 35.46 2.50
272 441 5.064962 CACAAAAGCTGAAGCAAAAATCCAA 59.935 36.000 4.90 0.00 45.16 3.53
275 444 4.571984 ACCACAAAAGCTGAAGCAAAAATC 59.428 37.500 4.90 0.00 45.16 2.17
276 445 4.516323 ACCACAAAAGCTGAAGCAAAAAT 58.484 34.783 4.90 0.00 45.16 1.82
282 452 2.358898 TCTTGACCACAAAAGCTGAAGC 59.641 45.455 0.00 0.00 37.12 3.86
288 458 2.669364 CAGCATCTTGACCACAAAAGC 58.331 47.619 0.00 0.00 35.49 3.51
292 462 1.610038 CAAGCAGCATCTTGACCACAA 59.390 47.619 11.20 0.00 44.61 3.33
299 469 2.553602 TGTACAACCAAGCAGCATCTTG 59.446 45.455 10.04 10.04 42.23 3.02
302 472 1.470098 CCTGTACAACCAAGCAGCATC 59.530 52.381 0.00 0.00 0.00 3.91
305 475 0.890996 AGCCTGTACAACCAAGCAGC 60.891 55.000 0.00 0.00 0.00 5.25
307 477 1.680735 CAAAGCCTGTACAACCAAGCA 59.319 47.619 0.00 0.00 0.00 3.91
308 478 1.953686 TCAAAGCCTGTACAACCAAGC 59.046 47.619 0.00 0.00 0.00 4.01
314 484 4.211125 TGTGGAATTCAAAGCCTGTACAA 58.789 39.130 7.93 0.00 0.00 2.41
317 487 5.738783 GCTTTTGTGGAATTCAAAGCCTGTA 60.739 40.000 21.66 0.00 36.40 2.74
318 488 4.696455 CTTTTGTGGAATTCAAAGCCTGT 58.304 39.130 7.93 0.00 36.40 4.00
322 492 3.059393 GCAGCTTTTGTGGAATTCAAAGC 60.059 43.478 23.48 23.48 36.40 3.51
368 538 0.865111 TTTGTCGGAAGTCATGCGTG 59.135 50.000 0.00 0.00 44.13 5.34
371 541 2.417719 AGTCTTTGTCGGAAGTCATGC 58.582 47.619 0.00 0.00 0.00 4.06
382 552 0.868406 CTGGACCGCAAGTCTTTGTC 59.132 55.000 4.07 0.00 45.54 3.18
383 553 0.535102 CCTGGACCGCAAGTCTTTGT 60.535 55.000 4.07 0.00 45.54 2.83
385 555 0.693049 ATCCTGGACCGCAAGTCTTT 59.307 50.000 0.00 0.00 45.54 2.52
391 561 4.819630 GTCAATATAAATCCTGGACCGCAA 59.180 41.667 0.00 0.00 0.00 4.85
394 564 4.755123 GTGGTCAATATAAATCCTGGACCG 59.245 45.833 0.00 0.00 44.77 4.79
397 567 8.837099 AAATTGTGGTCAATATAAATCCTGGA 57.163 30.769 0.00 0.00 42.60 3.86
465 636 9.011307 TCGTAACGAATTGTTGGAAAAACTCCA 62.011 37.037 0.00 0.00 42.28 3.86
466 637 5.397240 CGTAACGAATTGTTGGAAAAACTCC 59.603 40.000 0.00 0.00 45.64 3.85
469 640 5.967088 ACTCGTAACGAATTGTTGGAAAAAC 59.033 36.000 0.00 0.00 42.01 2.43
472 643 4.211794 GGACTCGTAACGAATTGTTGGAAA 59.788 41.667 0.00 0.00 42.01 3.13
473 644 3.742369 GGACTCGTAACGAATTGTTGGAA 59.258 43.478 0.00 0.00 42.01 3.53
474 645 3.243805 TGGACTCGTAACGAATTGTTGGA 60.244 43.478 0.00 0.00 42.01 3.53
475 646 3.061322 TGGACTCGTAACGAATTGTTGG 58.939 45.455 0.00 0.00 42.01 3.77
479 650 5.013236 CGAAATTGGACTCGTAACGAATTG 58.987 41.667 0.00 0.00 34.74 2.32
480 651 4.687483 ACGAAATTGGACTCGTAACGAATT 59.313 37.500 1.17 0.00 45.94 2.17
481 652 4.240096 ACGAAATTGGACTCGTAACGAAT 58.760 39.130 1.17 0.00 45.94 3.34
482 653 3.641648 ACGAAATTGGACTCGTAACGAA 58.358 40.909 1.17 0.00 45.94 3.85
489 660 4.211374 AGAGAACAAACGAAATTGGACTCG 59.789 41.667 0.00 0.00 39.35 4.18
490 661 5.007724 ACAGAGAACAAACGAAATTGGACTC 59.992 40.000 0.00 5.42 37.12 3.36
492 663 4.970003 CACAGAGAACAAACGAAATTGGAC 59.030 41.667 0.00 0.00 34.56 4.02
493 664 4.497340 GCACAGAGAACAAACGAAATTGGA 60.497 41.667 0.00 0.00 34.56 3.53
494 665 3.730715 GCACAGAGAACAAACGAAATTGG 59.269 43.478 0.00 0.00 34.56 3.16
495 666 3.730715 GGCACAGAGAACAAACGAAATTG 59.269 43.478 0.00 0.00 36.37 2.32
496 667 3.632145 AGGCACAGAGAACAAACGAAATT 59.368 39.130 0.00 0.00 0.00 1.82
497 668 3.003689 CAGGCACAGAGAACAAACGAAAT 59.996 43.478 0.00 0.00 0.00 2.17
498 669 2.354510 CAGGCACAGAGAACAAACGAAA 59.645 45.455 0.00 0.00 0.00 3.46
499 670 1.939934 CAGGCACAGAGAACAAACGAA 59.060 47.619 0.00 0.00 0.00 3.85
502 673 1.002033 CAGCAGGCACAGAGAACAAAC 60.002 52.381 0.00 0.00 0.00 2.93
506 677 1.597742 TTTCAGCAGGCACAGAGAAC 58.402 50.000 0.00 0.00 0.00 3.01
511 682 4.959446 GCTTTTCAGCAGGCACAG 57.041 55.556 0.00 0.00 46.49 3.66
532 703 8.554490 AAGCTATTCTCTAAAATGTCTCCCTA 57.446 34.615 0.00 0.00 0.00 3.53
564 736 7.338957 TCATGCAACCTGTATTCAATTGTGATA 59.661 33.333 5.13 3.10 32.48 2.15
565 737 5.981088 TGCAACCTGTATTCAATTGTGAT 57.019 34.783 5.13 4.04 32.48 3.06
566 738 5.476254 TCATGCAACCTGTATTCAATTGTGA 59.524 36.000 5.13 0.00 0.00 3.58
567 739 5.712004 TCATGCAACCTGTATTCAATTGTG 58.288 37.500 5.13 0.00 0.00 3.33
568 740 5.981088 TCATGCAACCTGTATTCAATTGT 57.019 34.783 5.13 0.00 0.00 2.71
569 741 6.566141 TGATCATGCAACCTGTATTCAATTG 58.434 36.000 0.00 0.00 0.00 2.32
570 742 6.778834 TGATCATGCAACCTGTATTCAATT 57.221 33.333 0.00 0.00 0.00 2.32
571 743 6.778834 TTGATCATGCAACCTGTATTCAAT 57.221 33.333 0.00 0.00 0.00 2.57
572 744 6.587206 TTTGATCATGCAACCTGTATTCAA 57.413 33.333 0.00 0.00 0.00 2.69
573 745 6.778834 ATTTGATCATGCAACCTGTATTCA 57.221 33.333 0.00 0.00 0.00 2.57
574 746 9.023967 GTTTATTTGATCATGCAACCTGTATTC 57.976 33.333 0.00 0.00 0.00 1.75
575 747 8.530311 TGTTTATTTGATCATGCAACCTGTATT 58.470 29.630 0.00 0.00 0.00 1.89
576 748 8.065473 TGTTTATTTGATCATGCAACCTGTAT 57.935 30.769 0.00 0.00 0.00 2.29
581 784 7.887996 TTCTTGTTTATTTGATCATGCAACC 57.112 32.000 0.00 0.00 0.00 3.77
599 802 4.574674 TGGCATCTCCTGTATTTCTTGT 57.425 40.909 0.00 0.00 35.26 3.16
617 835 8.213518 TCATAGTAGAGTTTTCATTTGATGGC 57.786 34.615 0.00 0.00 0.00 4.40
640 858 9.692749 CTTACTTACAGACTTGAGTTAACATCA 57.307 33.333 8.61 6.06 0.00 3.07
641 859 9.694137 ACTTACTTACAGACTTGAGTTAACATC 57.306 33.333 8.61 3.47 0.00 3.06
658 876 7.256756 TCCGCTCTATCTACAACTTACTTAC 57.743 40.000 0.00 0.00 0.00 2.34
660 878 6.770746 TTCCGCTCTATCTACAACTTACTT 57.229 37.500 0.00 0.00 0.00 2.24
661 879 6.963083 ATTCCGCTCTATCTACAACTTACT 57.037 37.500 0.00 0.00 0.00 2.24
662 880 6.074249 GCAATTCCGCTCTATCTACAACTTAC 60.074 42.308 0.00 0.00 0.00 2.34
671 894 2.890808 TTCGCAATTCCGCTCTATCT 57.109 45.000 0.00 0.00 0.00 1.98
674 897 2.665649 TCTTTCGCAATTCCGCTCTA 57.334 45.000 0.00 0.00 0.00 2.43
679 902 2.858344 ACTCGTATCTTTCGCAATTCCG 59.142 45.455 0.00 0.00 0.00 4.30
687 910 2.752144 ACGCCTACTCGTATCTTTCG 57.248 50.000 0.00 0.00 41.36 3.46
718 944 3.081061 TGATACAAGCAATTGAAGGCGT 58.919 40.909 10.34 0.85 34.54 5.68
719 945 3.763097 TGATACAAGCAATTGAAGGCG 57.237 42.857 10.34 0.00 34.54 5.52
736 964 5.988310 TCTCATGCCTGTTGAAAAATGAT 57.012 34.783 0.00 0.00 0.00 2.45
767 995 4.344968 AGTGTTGGCAGCCTATTTTTCTTT 59.655 37.500 14.15 0.00 0.00 2.52
768 996 3.897505 AGTGTTGGCAGCCTATTTTTCTT 59.102 39.130 14.15 0.00 0.00 2.52
772 1000 2.875296 TCAGTGTTGGCAGCCTATTTT 58.125 42.857 14.15 0.00 0.00 1.82
773 1001 2.584835 TCAGTGTTGGCAGCCTATTT 57.415 45.000 14.15 0.00 0.00 1.40
776 1004 1.055849 TCTTCAGTGTTGGCAGCCTA 58.944 50.000 14.15 0.94 0.00 3.93
779 1007 1.597742 TCTTCTTCAGTGTTGGCAGC 58.402 50.000 0.00 0.00 0.00 5.25
780 1008 4.637483 TTTTCTTCTTCAGTGTTGGCAG 57.363 40.909 0.00 0.00 0.00 4.85
781 1009 4.219507 TGTTTTTCTTCTTCAGTGTTGGCA 59.780 37.500 0.00 0.00 0.00 4.92
784 1012 5.954335 ACCTGTTTTTCTTCTTCAGTGTTG 58.046 37.500 0.00 0.00 0.00 3.33
786 1014 5.622233 GCAACCTGTTTTTCTTCTTCAGTGT 60.622 40.000 0.00 0.00 0.00 3.55
787 1015 4.800471 GCAACCTGTTTTTCTTCTTCAGTG 59.200 41.667 0.00 0.00 0.00 3.66
788 1016 4.142160 GGCAACCTGTTTTTCTTCTTCAGT 60.142 41.667 0.00 0.00 0.00 3.41
789 1017 4.363138 GGCAACCTGTTTTTCTTCTTCAG 58.637 43.478 0.00 0.00 0.00 3.02
790 1018 4.385358 GGCAACCTGTTTTTCTTCTTCA 57.615 40.909 0.00 0.00 0.00 3.02
833 1061 1.211818 GCTCTTCGGATGCTAGCACG 61.212 60.000 22.07 20.09 33.38 5.34
846 1074 2.875317 GCTGGTTGCCTATTAGCTCTTC 59.125 50.000 0.00 0.00 35.15 2.87
858 1089 0.466922 ATCTATGCCAGCTGGTTGCC 60.467 55.000 32.81 17.25 44.23 4.52
859 1090 2.260844 TATCTATGCCAGCTGGTTGC 57.739 50.000 32.81 19.56 43.29 4.17
862 1093 3.054582 CCATCATATCTATGCCAGCTGGT 60.055 47.826 32.81 17.61 37.57 4.00
867 1098 6.817641 GTCTTTCTCCATCATATCTATGCCAG 59.182 42.308 0.00 0.00 33.76 4.85
868 1099 6.270695 TGTCTTTCTCCATCATATCTATGCCA 59.729 38.462 0.00 0.00 33.76 4.92
873 1104 8.539117 TTCAGTGTCTTTCTCCATCATATCTA 57.461 34.615 0.00 0.00 0.00 1.98
875 1106 7.495901 TCTTCAGTGTCTTTCTCCATCATATC 58.504 38.462 0.00 0.00 0.00 1.63
876 1107 7.429374 TCTTCAGTGTCTTTCTCCATCATAT 57.571 36.000 0.00 0.00 0.00 1.78
877 1108 6.857437 TCTTCAGTGTCTTTCTCCATCATA 57.143 37.500 0.00 0.00 0.00 2.15
878 1109 5.752036 TCTTCAGTGTCTTTCTCCATCAT 57.248 39.130 0.00 0.00 0.00 2.45
879 1110 5.163311 TGTTCTTCAGTGTCTTTCTCCATCA 60.163 40.000 0.00 0.00 0.00 3.07
885 1116 4.651503 TCCTCTGTTCTTCAGTGTCTTTCT 59.348 41.667 0.00 0.00 43.97 2.52
888 1119 3.070302 GGTCCTCTGTTCTTCAGTGTCTT 59.930 47.826 0.00 0.00 43.97 3.01
902 1133 4.608948 ACTAGTGTTTTGAGGTCCTCTG 57.391 45.455 19.82 2.23 0.00 3.35
927 1201 5.957796 GCGCACACTTCAACTGTATTTATAC 59.042 40.000 0.30 0.00 0.00 1.47
936 1210 0.657312 TTCAGCGCACACTTCAACTG 59.343 50.000 11.47 0.00 0.00 3.16
942 1216 2.095059 GGATTTGATTCAGCGCACACTT 60.095 45.455 11.47 0.00 0.00 3.16
973 2731 1.473080 GCCTGGTGTTTGCATGTTGTT 60.473 47.619 0.00 0.00 0.00 2.83
1006 2764 0.610232 AGCAATGGTGTCAAGGGAGC 60.610 55.000 0.00 0.00 0.00 4.70
1103 2864 2.630580 AGGGCTATTCGTTGAGATCTCC 59.369 50.000 20.03 4.63 0.00 3.71
1107 2868 2.630580 GAGGAGGGCTATTCGTTGAGAT 59.369 50.000 0.00 0.00 0.00 2.75
1116 2877 2.143419 CCAGCGGAGGAGGGCTATT 61.143 63.158 0.00 0.00 37.41 1.73
1192 2953 0.179032 ATGTCCGTCCAGTTGCACAA 60.179 50.000 0.00 0.00 0.00 3.33
1193 2954 0.602638 GATGTCCGTCCAGTTGCACA 60.603 55.000 0.00 0.00 0.00 4.57
1208 2969 1.239296 AACAGCTGCGCACATGATGT 61.239 50.000 20.71 16.87 0.00 3.06
1257 3018 0.679002 CTGGCAGGGAGATGTTGGTG 60.679 60.000 6.61 0.00 0.00 4.17
1675 3436 3.567478 ATTTAGCCGGCTCAGATTTCT 57.433 42.857 36.73 8.54 0.00 2.52
1943 3704 3.118000 CCCTAGTTCTGGGGGTATTGAAC 60.118 52.174 12.61 0.00 40.97 3.18
1944 3705 3.120108 CCCTAGTTCTGGGGGTATTGAA 58.880 50.000 12.61 0.00 40.97 2.69
1945 3706 2.319747 TCCCTAGTTCTGGGGGTATTGA 59.680 50.000 18.78 0.00 44.67 2.57
1946 3707 2.771688 TCCCTAGTTCTGGGGGTATTG 58.228 52.381 18.78 0.00 44.67 1.90
1947 3708 3.120898 GTTCCCTAGTTCTGGGGGTATT 58.879 50.000 18.78 0.00 44.67 1.89
1948 3709 2.631540 GGTTCCCTAGTTCTGGGGGTAT 60.632 54.545 18.78 0.00 44.67 2.73
1949 3710 1.274011 GGTTCCCTAGTTCTGGGGGTA 60.274 57.143 18.78 7.04 44.67 3.69
1950 3711 0.549413 GGTTCCCTAGTTCTGGGGGT 60.549 60.000 18.78 0.00 44.67 4.95
1951 3712 0.253207 AGGTTCCCTAGTTCTGGGGG 60.253 60.000 18.78 12.21 44.67 5.40
1952 3713 1.205055 GAGGTTCCCTAGTTCTGGGG 58.795 60.000 14.02 14.02 44.67 4.96
1953 3714 0.824759 CGAGGTTCCCTAGTTCTGGG 59.175 60.000 0.00 0.00 45.90 4.45
1954 3715 0.175989 GCGAGGTTCCCTAGTTCTGG 59.824 60.000 0.00 0.00 31.76 3.86
1955 3716 1.187087 AGCGAGGTTCCCTAGTTCTG 58.813 55.000 0.00 0.00 31.76 3.02
1956 3717 2.822707 TAGCGAGGTTCCCTAGTTCT 57.177 50.000 0.00 0.00 31.76 3.01
1957 3718 3.637694 AGAATAGCGAGGTTCCCTAGTTC 59.362 47.826 0.00 0.00 31.76 3.01
1958 3719 3.644335 AGAATAGCGAGGTTCCCTAGTT 58.356 45.455 0.00 0.00 31.76 2.24
1959 3720 3.315880 AGAATAGCGAGGTTCCCTAGT 57.684 47.619 0.00 0.00 31.76 2.57
1960 3721 5.509332 GGTTTAGAATAGCGAGGTTCCCTAG 60.509 48.000 0.00 0.00 31.76 3.02
1961 3722 4.343239 GGTTTAGAATAGCGAGGTTCCCTA 59.657 45.833 0.00 0.00 31.76 3.53
1962 3723 3.134262 GGTTTAGAATAGCGAGGTTCCCT 59.866 47.826 0.00 0.00 36.03 4.20
1963 3724 3.118519 TGGTTTAGAATAGCGAGGTTCCC 60.119 47.826 0.00 0.00 0.00 3.97
1964 3725 4.133013 TGGTTTAGAATAGCGAGGTTCC 57.867 45.455 0.00 0.00 0.00 3.62
1965 3726 5.176592 AGTTGGTTTAGAATAGCGAGGTTC 58.823 41.667 0.00 0.00 0.00 3.62
1966 3727 5.161943 AGTTGGTTTAGAATAGCGAGGTT 57.838 39.130 0.00 0.00 0.00 3.50
1967 3728 4.820894 AGTTGGTTTAGAATAGCGAGGT 57.179 40.909 0.00 0.00 0.00 3.85
1968 3729 5.175859 TCAAGTTGGTTTAGAATAGCGAGG 58.824 41.667 2.34 0.00 0.00 4.63
1969 3730 6.369065 AGTTCAAGTTGGTTTAGAATAGCGAG 59.631 38.462 2.34 0.00 0.00 5.03
1970 3731 6.228258 AGTTCAAGTTGGTTTAGAATAGCGA 58.772 36.000 2.34 0.00 0.00 4.93
1971 3732 6.369065 AGAGTTCAAGTTGGTTTAGAATAGCG 59.631 38.462 2.34 0.00 0.00 4.26
1972 3733 7.674471 AGAGTTCAAGTTGGTTTAGAATAGC 57.326 36.000 2.34 0.00 0.00 2.97
2013 3774 4.469945 CCTAGTTCTGGGAGTATTGAACCA 59.530 45.833 0.00 0.00 39.45 3.67
2037 3798 4.694509 AGTTCATTGAGCACAGTGAGATTC 59.305 41.667 4.15 3.35 42.10 2.52
2047 3808 6.456718 GCATAGAGAGAAAGTTCATTGAGCAC 60.457 42.308 3.25 0.00 0.00 4.40
2052 3813 8.456471 TGATTTGCATAGAGAGAAAGTTCATTG 58.544 33.333 0.00 0.00 0.00 2.82
2055 3816 7.984422 TTGATTTGCATAGAGAGAAAGTTCA 57.016 32.000 0.00 0.00 0.00 3.18
2161 4498 5.163416 ACATGCCCAATTCTAAAGGTATTGC 60.163 40.000 0.00 0.00 0.00 3.56
2458 5011 5.798125 TTGCCACCTGAACAAATATTTGA 57.202 34.783 30.18 10.84 40.55 2.69
2802 5367 4.522971 GGTGGAATCTCACCGCTC 57.477 61.111 5.40 0.00 46.31 5.03
2944 5509 7.082972 AGTTCCCTAGGTATTAATCCACTCAT 58.917 38.462 8.29 0.00 0.00 2.90
3032 5600 3.179048 GCTAAATTTCCAATCGCACCAC 58.821 45.455 0.00 0.00 0.00 4.16
3060 5629 6.207221 TGTTGCTCACATCTAACATGATTTGT 59.793 34.615 0.00 0.00 41.53 2.83
3063 5632 6.822667 TTGTTGCTCACATCTAACATGATT 57.177 33.333 0.00 0.00 34.43 2.57
3171 5740 0.040204 CAAAGGAGGGTGGGATGCTT 59.960 55.000 0.00 0.00 0.00 3.91
3177 5746 2.278330 GCTTGCAAAGGAGGGTGGG 61.278 63.158 0.00 0.00 46.35 4.61
3357 5926 2.635915 TGTCTTCCGTTTATGGTGACCT 59.364 45.455 2.11 0.00 34.85 3.85
3383 5952 5.163733 ACAAGAACAATTGGCAAAAGCAAAG 60.164 36.000 10.83 0.00 34.36 2.77
3419 5988 1.515081 GGCAATTGCAGCAACAATGT 58.485 45.000 30.32 0.00 44.36 2.71
3465 6034 7.966204 GCAGTAACACTTTCTTGTTGTTTTCTA 59.034 33.333 0.00 0.00 40.04 2.10
3473 6042 5.066505 CCTTCAGCAGTAACACTTTCTTGTT 59.933 40.000 0.00 0.00 42.46 2.83
3639 6208 5.738909 AGCTTCTTCACAGCAACTATATGT 58.261 37.500 0.00 0.00 39.99 2.29
3705 6280 8.868522 TCTGTGATAAGATTTCCATTTCACTT 57.131 30.769 0.00 0.00 34.55 3.16
3829 6404 4.202441 GCTAGCTCCTCATTTTCCAATGA 58.798 43.478 7.70 0.00 45.54 2.57
3859 6434 7.945033 GAGTTATTCTCTTCTGCCAATCTAG 57.055 40.000 0.00 0.00 39.86 2.43
3879 6454 1.610522 GCCACATCAGTTGCAAGAGTT 59.389 47.619 0.00 0.00 36.48 3.01
3975 6550 4.092116 AGCCCTGAAGGTTATATCAAGC 57.908 45.455 0.00 0.00 38.26 4.01
3992 6567 2.352715 CCAAAATCCGAGACAAAAGCCC 60.353 50.000 0.00 0.00 0.00 5.19
4125 6705 7.449395 TGAGGAACAAATGAACTGAGATGAATT 59.551 33.333 0.00 0.00 0.00 2.17
4150 6731 8.980610 TCTGCACAAAATCAAAACATTAGAATG 58.019 29.630 0.61 0.61 42.10 2.67
4243 6832 3.114606 TGGATGCTTTCCCATCACTAGA 58.885 45.455 0.00 0.00 44.77 2.43
4255 6844 7.125391 TGTCTAATTTATCCCTTGGATGCTTT 58.875 34.615 5.88 0.07 43.06 3.51
4281 6870 2.946329 TGTTTCTCGCTTGGCAAACTAA 59.054 40.909 0.00 0.00 31.29 2.24
4296 6885 5.827797 TCTTTCACCAACATAGCTTGTTTCT 59.172 36.000 10.38 0.00 46.51 2.52
4310 6899 5.512942 TGGTCCAGAATATCTTTCACCAA 57.487 39.130 0.00 0.00 28.90 3.67
4345 6934 8.567285 AGTTATTCTCTTCTGTTATTGTTGGG 57.433 34.615 0.00 0.00 0.00 4.12
4378 6967 4.307032 AGAAAAGGCCAGCTTAATGAGA 57.693 40.909 5.01 0.00 0.00 3.27
4471 7088 6.653320 TCCTTTACTTGCTGTAATGTAAGTGG 59.347 38.462 7.94 2.43 41.59 4.00
4497 7114 4.615588 TCGGATCATATACCAACATGCA 57.384 40.909 0.00 0.00 0.00 3.96
4498 7115 5.334879 GGTTTCGGATCATATACCAACATGC 60.335 44.000 0.00 0.00 0.00 4.06
4499 7116 5.997746 AGGTTTCGGATCATATACCAACATG 59.002 40.000 0.00 0.00 0.00 3.21
4500 7117 6.187727 AGGTTTCGGATCATATACCAACAT 57.812 37.500 0.00 0.00 0.00 2.71
4501 7118 5.623956 AGGTTTCGGATCATATACCAACA 57.376 39.130 0.00 0.00 0.00 3.33
4502 7119 6.645415 CACTAGGTTTCGGATCATATACCAAC 59.355 42.308 0.00 0.00 0.00 3.77
4503 7120 6.551975 TCACTAGGTTTCGGATCATATACCAA 59.448 38.462 0.00 0.00 0.00 3.67
4504 7121 6.072649 TCACTAGGTTTCGGATCATATACCA 58.927 40.000 0.00 0.00 0.00 3.25
4505 7122 6.433404 TCTCACTAGGTTTCGGATCATATACC 59.567 42.308 0.00 0.00 0.00 2.73
4506 7123 7.450124 TCTCACTAGGTTTCGGATCATATAC 57.550 40.000 0.00 0.00 0.00 1.47
4563 7194 2.946990 GACTCCAGGAAAAACGGAAACA 59.053 45.455 0.00 0.00 0.00 2.83
4579 7211 1.765314 AGGTGGCATATGAGTGACTCC 59.235 52.381 10.52 0.00 40.34 3.85
4652 7286 5.565045 GCATGGACCGGTTTTTATTGTTACA 60.565 40.000 9.42 0.00 0.00 2.41
4679 7314 0.320771 ATGTCGTGAACAGGCTCACC 60.321 55.000 0.39 0.00 42.34 4.02
4812 7464 5.705905 GCTAACACAAAGGTCCTAATCTTGT 59.294 40.000 1.44 1.44 0.00 3.16
4869 7525 5.429957 CAGCTTTTCTGCTTTGTTCTACT 57.570 39.130 0.00 0.00 41.98 2.57
4914 7570 6.937392 AGAAGAATTAGTGAACACTAGGGAC 58.063 40.000 13.20 7.98 43.92 4.46
4918 7574 8.192110 GGAGGTAGAAGAATTAGTGAACACTAG 58.808 40.741 13.20 0.00 43.92 2.57
4919 7575 7.123847 GGGAGGTAGAAGAATTAGTGAACACTA 59.876 40.741 10.14 10.14 42.54 2.74
4952 7608 8.787818 CCCAAGGTATATATATATTGTTGGGGT 58.212 37.037 28.63 6.71 39.13 4.95
4964 7620 8.992349 CCATCAACTCATCCCAAGGTATATATA 58.008 37.037 0.00 0.00 0.00 0.86
4975 7631 1.288188 TGAGCCATCAACTCATCCCA 58.712 50.000 0.00 0.00 39.21 4.37
4990 7646 5.355350 ACAAAGCCATAGACTTACAATGAGC 59.645 40.000 0.00 0.00 0.00 4.26
5046 7702 2.095919 GGAAATAACACAGGCACACGAC 60.096 50.000 0.00 0.00 0.00 4.34
5048 7704 2.095768 CAGGAAATAACACAGGCACACG 60.096 50.000 0.00 0.00 0.00 4.49
5068 7724 2.054232 TTACGTGGAAAACCCTTGCA 57.946 45.000 0.00 0.00 35.38 4.08
5095 7751 7.812309 TGAACAATATCAAGAAGACAGTACG 57.188 36.000 0.00 0.00 0.00 3.67
5100 7756 9.671279 ACACATATGAACAATATCAAGAAGACA 57.329 29.630 10.38 0.00 32.06 3.41
5115 7771 9.353999 GAAATTGGGAAGTAAACACATATGAAC 57.646 33.333 10.38 0.00 0.00 3.18
5123 7779 7.328493 GCATGTTAGAAATTGGGAAGTAAACAC 59.672 37.037 0.00 0.00 0.00 3.32
5223 7882 2.352651 CAGAAAGTGTCACATATGGGCG 59.647 50.000 7.80 0.00 0.00 6.13
5247 7906 0.764890 TACCCTTGCAGACAACAGCT 59.235 50.000 0.00 0.00 0.00 4.24
5286 7947 8.951243 GGAGCAAAAGTAGATAAAAAGAGACAT 58.049 33.333 0.00 0.00 0.00 3.06
5349 8012 5.353956 TCGGAATTAAATGACACCATGACAG 59.646 40.000 0.00 0.00 32.36 3.51
5352 8015 7.403312 AAATCGGAATTAAATGACACCATGA 57.597 32.000 0.00 0.00 32.36 3.07
5367 8030 5.756833 GTCCCGTAGAACAATAAATCGGAAT 59.243 40.000 0.00 0.00 38.96 3.01
5387 8050 5.812286 TCAGGGTATTTTACTTTGAGTCCC 58.188 41.667 0.00 0.00 0.00 4.46
5391 8054 7.824289 TCTGTGATCAGGGTATTTTACTTTGAG 59.176 37.037 0.00 0.00 41.59 3.02
5411 8074 9.452287 TGATCATTATGATTGTTTCTTCTGTGA 57.548 29.630 9.24 0.00 37.20 3.58
5456 8119 4.381566 GCGCGTTTACATTCATTTGTTCTT 59.618 37.500 8.43 0.00 0.00 2.52


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.