Multiple sequence alignment - TraesCS1A01G006400

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Download Multiple Sequence Alignment: (Fasta) (Clustal)


BLAST Results


Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.

qseqid sseqid percentage.identical alignment.length no.mismatch no.gap.openings qstart qend sstart send evalue bitscore
0 TraesCS1A01G006400 chr1A 100.000 3458 0 0 1 3458 3533796 3530339 0.000000e+00 6386
1 TraesCS1A01G006400 chr1A 90.005 1961 174 11 746 2699 2943313 2945258 0.000000e+00 2516
2 TraesCS1A01G006400 chr1A 98.287 759 13 0 2700 3458 6082448 6081690 0.000000e+00 1330
3 TraesCS1A01G006400 chr1A 83.794 253 28 8 422 666 2942496 2942743 9.650000e-56 228
4 TraesCS1A01G006400 chr1B 92.617 1964 122 13 746 2699 4597499 4595549 0.000000e+00 2802
5 TraesCS1A01G006400 chr1B 88.841 2097 194 30 619 2699 4954499 4952427 0.000000e+00 2540
6 TraesCS1A01G006400 chr1B 89.778 1937 171 16 746 2667 70232870 70234794 0.000000e+00 2455
7 TraesCS1A01G006400 chr1B 86.924 2126 208 37 585 2699 4519056 4516990 0.000000e+00 2322
8 TraesCS1A01G006400 chr1B 98.802 751 7 1 2710 3458 673415884 673416634 0.000000e+00 1336
9 TraesCS1A01G006400 chr1B 86.022 186 9 6 421 606 46691813 46691981 2.120000e-42 183
10 TraesCS1A01G006400 chr1B 78.662 314 31 22 423 712 4519763 4519462 3.550000e-40 176
11 TraesCS1A01G006400 chr3D 87.840 2130 203 29 585 2706 560024942 560022861 0.000000e+00 2447
12 TraesCS1A01G006400 chr6D 88.682 1935 180 27 744 2668 51342997 51344902 0.000000e+00 2324
13 TraesCS1A01G006400 chr6B 88.842 1882 178 15 813 2689 120317337 120315483 0.000000e+00 2283
14 TraesCS1A01G006400 chr6B 88.114 1935 190 22 744 2668 120355022 120353118 0.000000e+00 2263
15 TraesCS1A01G006400 chr6B 97.795 771 12 4 2691 3458 132676086 132675318 0.000000e+00 1325
16 TraesCS1A01G006400 chr2B 98.947 760 8 0 2699 3458 325906580 325907339 0.000000e+00 1360
17 TraesCS1A01G006400 chr2B 98.819 762 8 1 2698 3458 305754738 305755499 0.000000e+00 1356
18 TraesCS1A01G006400 chr2A 98.551 759 10 1 2701 3458 238721012 238721770 0.000000e+00 1339
19 TraesCS1A01G006400 chr2A 98.158 760 14 0 2699 3458 599161478 599160719 0.000000e+00 1327
20 TraesCS1A01G006400 chr2A 97.647 425 8 2 1 424 451744582 451744159 0.000000e+00 728
21 TraesCS1A01G006400 chr2A 97.647 425 9 1 1 424 748641976 748641552 0.000000e+00 728
22 TraesCS1A01G006400 chr2A 97.642 424 9 1 1 423 778206862 778207285 0.000000e+00 726
23 TraesCS1A01G006400 chr2A 97.209 430 9 3 1 427 327340481 327340052 0.000000e+00 725
24 TraesCS1A01G006400 chr4B 98.292 761 12 1 2699 3458 445047471 445048231 0.000000e+00 1332
25 TraesCS1A01G006400 chr4A 98.285 758 11 2 2701 3458 38385493 38386248 0.000000e+00 1327
26 TraesCS1A01G006400 chr4A 96.782 435 11 3 1 433 589833373 589833806 0.000000e+00 723
27 TraesCS1A01G006400 chr4A 91.304 184 14 2 423 606 666694217 666694036 2.060000e-62 250
28 TraesCS1A01G006400 chr7A 96.789 436 11 3 1 433 387545269 387544834 0.000000e+00 725
29 TraesCS1A01G006400 chr7A 97.196 428 9 3 1 427 728176839 728177264 0.000000e+00 721
30 TraesCS1A01G006400 chr7A 95.890 438 16 2 1 437 689883654 689884090 0.000000e+00 708
31 TraesCS1A01G006400 chr7A 96.270 429 13 3 1 426 105296574 105297002 0.000000e+00 701
32 TraesCS1A01G006400 chr7A 95.455 440 16 4 1 438 672376486 672376049 0.000000e+00 699
33 TraesCS1A01G006400 chr7A 94.248 452 23 3 1 449 201618685 201618234 0.000000e+00 688
34 TraesCS1A01G006400 chr3A 97.418 426 9 2 1 424 63442968 63443393 0.000000e+00 725
35 TraesCS1A01G006400 chr3A 97.424 427 8 3 1 424 661856909 661856483 0.000000e+00 725
36 TraesCS1A01G006400 chr3A 97.412 425 9 2 1 424 119672183 119672606 0.000000e+00 723
37 TraesCS1A01G006400 chr3A 97.412 425 9 2 1 424 432666406 432665983 0.000000e+00 723
38 TraesCS1A01G006400 chr3A 96.330 436 14 2 1 435 679838306 679838740 0.000000e+00 715
39 TraesCS1A01G006400 chr5A 96.991 432 9 4 1 429 331487365 331487795 0.000000e+00 723
40 TraesCS1A01G006400 chrUn 93.103 261 8 6 459 719 325465859 325466109 1.170000e-99 374
41 TraesCS1A01G006400 chrUn 83.794 253 28 8 422 666 361630901 361631148 9.650000e-56 228
42 TraesCS1A01G006400 chr3B 90.761 184 15 2 423 606 409335416 409335235 9.590000e-61 244
43 TraesCS1A01G006400 chr6A 83.486 218 21 7 462 666 613492876 613493091 4.560000e-44 189
44 TraesCS1A01G006400 chr7D 86.567 134 13 3 445 578 548230833 548230961 3.600000e-30 143
45 TraesCS1A01G006400 chr7B 85.821 134 13 4 445 578 591461379 591461506 1.670000e-28 137


These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.

query scaffold start end length rev.comp avg.bitscore max.bitscore avg.percent.identical query.start query.end num_hsp groupid homo_length
0 TraesCS1A01G006400 chr1A 3530339 3533796 3457 True 6386 6386 100.0000 1 3458 1 chr1A.!!$R1 3457
1 TraesCS1A01G006400 chr1A 2942496 2945258 2762 False 1372 2516 86.8995 422 2699 2 chr1A.!!$F1 2277
2 TraesCS1A01G006400 chr1A 6081690 6082448 758 True 1330 1330 98.2870 2700 3458 1 chr1A.!!$R2 758
3 TraesCS1A01G006400 chr1B 4595549 4597499 1950 True 2802 2802 92.6170 746 2699 1 chr1B.!!$R1 1953
4 TraesCS1A01G006400 chr1B 4952427 4954499 2072 True 2540 2540 88.8410 619 2699 1 chr1B.!!$R2 2080
5 TraesCS1A01G006400 chr1B 70232870 70234794 1924 False 2455 2455 89.7780 746 2667 1 chr1B.!!$F2 1921
6 TraesCS1A01G006400 chr1B 673415884 673416634 750 False 1336 1336 98.8020 2710 3458 1 chr1B.!!$F3 748
7 TraesCS1A01G006400 chr1B 4516990 4519763 2773 True 1249 2322 82.7930 423 2699 2 chr1B.!!$R3 2276
8 TraesCS1A01G006400 chr3D 560022861 560024942 2081 True 2447 2447 87.8400 585 2706 1 chr3D.!!$R1 2121
9 TraesCS1A01G006400 chr6D 51342997 51344902 1905 False 2324 2324 88.6820 744 2668 1 chr6D.!!$F1 1924
10 TraesCS1A01G006400 chr6B 120315483 120317337 1854 True 2283 2283 88.8420 813 2689 1 chr6B.!!$R1 1876
11 TraesCS1A01G006400 chr6B 120353118 120355022 1904 True 2263 2263 88.1140 744 2668 1 chr6B.!!$R2 1924
12 TraesCS1A01G006400 chr6B 132675318 132676086 768 True 1325 1325 97.7950 2691 3458 1 chr6B.!!$R3 767
13 TraesCS1A01G006400 chr2B 325906580 325907339 759 False 1360 1360 98.9470 2699 3458 1 chr2B.!!$F2 759
14 TraesCS1A01G006400 chr2B 305754738 305755499 761 False 1356 1356 98.8190 2698 3458 1 chr2B.!!$F1 760
15 TraesCS1A01G006400 chr2A 238721012 238721770 758 False 1339 1339 98.5510 2701 3458 1 chr2A.!!$F1 757
16 TraesCS1A01G006400 chr2A 599160719 599161478 759 True 1327 1327 98.1580 2699 3458 1 chr2A.!!$R3 759
17 TraesCS1A01G006400 chr4B 445047471 445048231 760 False 1332 1332 98.2920 2699 3458 1 chr4B.!!$F1 759
18 TraesCS1A01G006400 chr4A 38385493 38386248 755 False 1327 1327 98.2850 2701 3458 1 chr4A.!!$F1 757

AutoCloner calculated primer pairs

These primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible.

Download AutoCloner chosen primers as CSV: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
76 77 0.029834 CGGTATCCGGGAGTTACACG 59.970 60.0 0.0 4.03 44.15 4.49 F
1157 1835 0.613260 TCCGGTCTTTGCACTGCTAT 59.387 50.0 0.0 0.00 0.00 2.97 F
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability Orientation
1418 2097 0.034896 ACCGACTGCAACCGAGAAAT 59.965 50.0 8.73 0.0 0.0 2.17 R
2541 3226 0.389391 AATCTAGGTCGGGTGATGCG 59.611 55.0 0.00 0.0 0.0 4.73 R

All possible primers

Listed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives.

Download all possible primers: (Forward) (Reverse)
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
24 25 3.267483 CCTTTATGGTCACCCAGTTACG 58.733 50.000 0.00 0.00 46.15 3.18
25 26 3.307199 CCTTTATGGTCACCCAGTTACGT 60.307 47.826 0.00 0.00 46.15 3.57
26 27 4.320870 CTTTATGGTCACCCAGTTACGTT 58.679 43.478 0.00 0.00 46.15 3.99
27 28 2.178912 ATGGTCACCCAGTTACGTTG 57.821 50.000 0.00 0.00 46.15 4.10
28 29 0.831966 TGGTCACCCAGTTACGTTGT 59.168 50.000 0.00 0.00 35.17 3.32
29 30 1.223187 GGTCACCCAGTTACGTTGTG 58.777 55.000 0.00 0.00 0.00 3.33
30 31 1.202557 GGTCACCCAGTTACGTTGTGA 60.203 52.381 0.00 0.00 33.83 3.58
31 32 1.862827 GTCACCCAGTTACGTTGTGAC 59.137 52.381 14.61 14.61 46.02 3.67
42 43 2.356386 CGTTGTGACGTTTGGTACAC 57.644 50.000 0.00 0.00 44.08 2.90
43 44 1.004715 CGTTGTGACGTTTGGTACACC 60.005 52.381 0.00 0.00 44.08 4.16
44 45 1.331447 GTTGTGACGTTTGGTACACCC 59.669 52.381 0.00 0.00 39.29 4.61
45 46 0.540454 TGTGACGTTTGGTACACCCA 59.460 50.000 0.00 0.00 43.27 4.51
55 56 2.980548 TGGTACACCCAAAGTACTCCT 58.019 47.619 0.00 0.00 41.50 3.69
56 57 4.130719 TGGTACACCCAAAGTACTCCTA 57.869 45.455 0.00 0.00 41.50 2.94
57 58 3.834231 TGGTACACCCAAAGTACTCCTAC 59.166 47.826 0.00 0.00 41.50 3.18
58 59 3.119352 GGTACACCCAAAGTACTCCTACG 60.119 52.174 0.00 0.00 41.16 3.51
59 60 1.897802 ACACCCAAAGTACTCCTACGG 59.102 52.381 0.00 0.00 0.00 4.02
60 61 1.897802 CACCCAAAGTACTCCTACGGT 59.102 52.381 0.00 0.00 0.00 4.83
61 62 3.091545 CACCCAAAGTACTCCTACGGTA 58.908 50.000 0.00 0.00 0.00 4.02
62 63 3.703052 CACCCAAAGTACTCCTACGGTAT 59.297 47.826 0.00 0.00 0.00 2.73
63 64 3.956848 ACCCAAAGTACTCCTACGGTATC 59.043 47.826 0.00 0.00 0.00 2.24
64 65 3.320256 CCCAAAGTACTCCTACGGTATCC 59.680 52.174 0.00 0.00 0.00 2.59
75 76 3.953201 CGGTATCCGGGAGTTACAC 57.047 57.895 0.00 0.00 44.15 2.90
76 77 0.029834 CGGTATCCGGGAGTTACACG 59.970 60.000 0.00 4.03 44.15 4.49
85 86 3.099267 GGGAGTTACACGATCTCATGG 57.901 52.381 0.00 0.00 0.00 3.66
86 87 2.431057 GGGAGTTACACGATCTCATGGT 59.569 50.000 0.00 0.00 0.00 3.55
87 88 3.491104 GGGAGTTACACGATCTCATGGTC 60.491 52.174 0.00 0.00 0.00 4.02
88 89 3.381908 GGAGTTACACGATCTCATGGTCT 59.618 47.826 0.00 0.00 0.00 3.85
89 90 4.579340 GGAGTTACACGATCTCATGGTCTA 59.421 45.833 0.00 0.00 0.00 2.59
90 91 5.067413 GGAGTTACACGATCTCATGGTCTAA 59.933 44.000 0.00 0.00 0.00 2.10
91 92 6.137794 AGTTACACGATCTCATGGTCTAAG 57.862 41.667 0.00 0.00 0.00 2.18
92 93 5.067936 AGTTACACGATCTCATGGTCTAAGG 59.932 44.000 0.00 0.00 0.00 2.69
93 94 3.632333 ACACGATCTCATGGTCTAAGGA 58.368 45.455 0.00 0.00 0.00 3.36
94 95 4.023980 ACACGATCTCATGGTCTAAGGAA 58.976 43.478 0.00 0.00 0.00 3.36
95 96 4.466370 ACACGATCTCATGGTCTAAGGAAA 59.534 41.667 0.00 0.00 0.00 3.13
96 97 5.046529 CACGATCTCATGGTCTAAGGAAAG 58.953 45.833 0.00 0.00 0.00 2.62
97 98 4.100189 ACGATCTCATGGTCTAAGGAAAGG 59.900 45.833 0.00 0.00 0.00 3.11
98 99 4.342378 CGATCTCATGGTCTAAGGAAAGGA 59.658 45.833 0.00 0.00 0.00 3.36
99 100 5.011533 CGATCTCATGGTCTAAGGAAAGGAT 59.988 44.000 0.00 0.00 0.00 3.24
100 101 6.209589 CGATCTCATGGTCTAAGGAAAGGATA 59.790 42.308 0.00 0.00 0.00 2.59
101 102 6.732896 TCTCATGGTCTAAGGAAAGGATAC 57.267 41.667 0.00 0.00 0.00 2.24
121 122 8.202745 GGATACTTGACATTGGAAAACTCTAG 57.797 38.462 0.00 0.00 0.00 2.43
122 123 5.948992 ACTTGACATTGGAAAACTCTAGC 57.051 39.130 0.00 0.00 0.00 3.42
123 124 5.376625 ACTTGACATTGGAAAACTCTAGCA 58.623 37.500 0.00 0.00 0.00 3.49
124 125 5.827797 ACTTGACATTGGAAAACTCTAGCAA 59.172 36.000 0.00 0.00 0.00 3.91
125 126 6.321181 ACTTGACATTGGAAAACTCTAGCAAA 59.679 34.615 0.00 0.00 0.00 3.68
126 127 6.072112 TGACATTGGAAAACTCTAGCAAAC 57.928 37.500 0.00 0.00 0.00 2.93
127 128 5.108385 ACATTGGAAAACTCTAGCAAACG 57.892 39.130 0.00 0.00 0.00 3.60
128 129 4.819630 ACATTGGAAAACTCTAGCAAACGA 59.180 37.500 0.00 0.00 0.00 3.85
129 130 5.298276 ACATTGGAAAACTCTAGCAAACGAA 59.702 36.000 0.00 0.00 0.00 3.85
130 131 4.806342 TGGAAAACTCTAGCAAACGAAC 57.194 40.909 0.00 0.00 0.00 3.95
131 132 4.448210 TGGAAAACTCTAGCAAACGAACT 58.552 39.130 0.00 0.00 0.00 3.01
132 133 5.603596 TGGAAAACTCTAGCAAACGAACTA 58.396 37.500 0.00 0.00 0.00 2.24
133 134 6.228258 TGGAAAACTCTAGCAAACGAACTAT 58.772 36.000 0.00 0.00 0.00 2.12
134 135 7.380536 TGGAAAACTCTAGCAAACGAACTATA 58.619 34.615 0.00 0.00 0.00 1.31
135 136 7.874016 TGGAAAACTCTAGCAAACGAACTATAA 59.126 33.333 0.00 0.00 0.00 0.98
136 137 8.381387 GGAAAACTCTAGCAAACGAACTATAAG 58.619 37.037 0.00 0.00 0.00 1.73
137 138 9.136952 GAAAACTCTAGCAAACGAACTATAAGA 57.863 33.333 0.00 0.00 0.00 2.10
138 139 9.654663 AAAACTCTAGCAAACGAACTATAAGAT 57.345 29.630 0.00 0.00 0.00 2.40
139 140 8.859517 AACTCTAGCAAACGAACTATAAGATC 57.140 34.615 0.00 0.00 0.00 2.75
140 141 8.228035 ACTCTAGCAAACGAACTATAAGATCT 57.772 34.615 0.00 0.00 0.00 2.75
141 142 8.688151 ACTCTAGCAAACGAACTATAAGATCTT 58.312 33.333 13.56 13.56 0.00 2.40
142 143 8.858003 TCTAGCAAACGAACTATAAGATCTTG 57.142 34.615 18.47 3.97 0.00 3.02
143 144 8.467598 TCTAGCAAACGAACTATAAGATCTTGT 58.532 33.333 18.47 14.02 0.00 3.16
144 145 7.295952 AGCAAACGAACTATAAGATCTTGTG 57.704 36.000 18.47 9.91 0.00 3.33
145 146 5.960105 GCAAACGAACTATAAGATCTTGTGC 59.040 40.000 18.47 5.34 0.00 4.57
146 147 6.183360 GCAAACGAACTATAAGATCTTGTGCT 60.183 38.462 18.47 0.55 0.00 4.40
147 148 7.010183 GCAAACGAACTATAAGATCTTGTGCTA 59.990 37.037 18.47 0.00 0.00 3.49
148 149 9.035607 CAAACGAACTATAAGATCTTGTGCTAT 57.964 33.333 18.47 5.61 0.00 2.97
149 150 8.581057 AACGAACTATAAGATCTTGTGCTATG 57.419 34.615 18.47 6.20 0.00 2.23
150 151 7.717568 ACGAACTATAAGATCTTGTGCTATGT 58.282 34.615 18.47 6.78 0.00 2.29
151 152 8.198109 ACGAACTATAAGATCTTGTGCTATGTT 58.802 33.333 18.47 11.88 0.00 2.71
152 153 9.035607 CGAACTATAAGATCTTGTGCTATGTTT 57.964 33.333 18.47 1.37 0.00 2.83
155 156 9.988815 ACTATAAGATCTTGTGCTATGTTTAGG 57.011 33.333 18.47 0.00 0.00 2.69
159 160 7.798596 AGATCTTGTGCTATGTTTAGGATTG 57.201 36.000 0.00 0.00 0.00 2.67
160 161 6.769822 AGATCTTGTGCTATGTTTAGGATTGG 59.230 38.462 0.00 0.00 0.00 3.16
161 162 5.192927 TCTTGTGCTATGTTTAGGATTGGG 58.807 41.667 0.00 0.00 0.00 4.12
162 163 4.584638 TGTGCTATGTTTAGGATTGGGT 57.415 40.909 0.00 0.00 0.00 4.51
163 164 4.523083 TGTGCTATGTTTAGGATTGGGTC 58.477 43.478 0.00 0.00 0.00 4.46
164 165 4.227300 TGTGCTATGTTTAGGATTGGGTCT 59.773 41.667 0.00 0.00 0.00 3.85
165 166 5.193679 GTGCTATGTTTAGGATTGGGTCTT 58.806 41.667 0.00 0.00 0.00 3.01
166 167 5.066505 GTGCTATGTTTAGGATTGGGTCTTG 59.933 44.000 0.00 0.00 0.00 3.02
167 168 5.193679 GCTATGTTTAGGATTGGGTCTTGT 58.806 41.667 0.00 0.00 0.00 3.16
168 169 5.297029 GCTATGTTTAGGATTGGGTCTTGTC 59.703 44.000 0.00 0.00 0.00 3.18
169 170 4.028993 TGTTTAGGATTGGGTCTTGTCC 57.971 45.455 0.00 0.00 0.00 4.02
170 171 3.396276 TGTTTAGGATTGGGTCTTGTCCA 59.604 43.478 0.00 0.00 33.12 4.02
171 172 4.044065 TGTTTAGGATTGGGTCTTGTCCAT 59.956 41.667 0.00 0.00 33.82 3.41
172 173 4.503714 TTAGGATTGGGTCTTGTCCATC 57.496 45.455 0.00 0.00 33.82 3.51
173 174 2.278245 AGGATTGGGTCTTGTCCATCA 58.722 47.619 0.00 0.00 33.82 3.07
174 175 2.025887 AGGATTGGGTCTTGTCCATCAC 60.026 50.000 0.00 0.00 33.82 3.06
175 176 2.290896 GGATTGGGTCTTGTCCATCACA 60.291 50.000 0.00 0.00 33.82 3.58
176 177 3.624777 GATTGGGTCTTGTCCATCACAT 58.375 45.455 0.00 0.00 33.90 3.21
177 178 2.787473 TGGGTCTTGTCCATCACATC 57.213 50.000 0.00 0.00 33.90 3.06
178 179 1.984424 TGGGTCTTGTCCATCACATCA 59.016 47.619 0.00 0.00 33.90 3.07
179 180 2.577563 TGGGTCTTGTCCATCACATCAT 59.422 45.455 0.00 0.00 33.90 2.45
180 181 3.010472 TGGGTCTTGTCCATCACATCATT 59.990 43.478 0.00 0.00 33.90 2.57
181 182 3.629398 GGGTCTTGTCCATCACATCATTC 59.371 47.826 0.00 0.00 33.90 2.67
182 183 4.521146 GGTCTTGTCCATCACATCATTCT 58.479 43.478 0.00 0.00 33.90 2.40
183 184 4.574013 GGTCTTGTCCATCACATCATTCTC 59.426 45.833 0.00 0.00 33.90 2.87
184 185 4.574013 GTCTTGTCCATCACATCATTCTCC 59.426 45.833 0.00 0.00 33.90 3.71
185 186 4.472470 TCTTGTCCATCACATCATTCTCCT 59.528 41.667 0.00 0.00 33.90 3.69
186 187 5.662657 TCTTGTCCATCACATCATTCTCCTA 59.337 40.000 0.00 0.00 33.90 2.94
187 188 5.955961 TGTCCATCACATCATTCTCCTAA 57.044 39.130 0.00 0.00 0.00 2.69
188 189 6.505048 TGTCCATCACATCATTCTCCTAAT 57.495 37.500 0.00 0.00 0.00 1.73
189 190 6.293698 TGTCCATCACATCATTCTCCTAATG 58.706 40.000 0.00 0.00 0.00 1.90
190 191 6.100134 TGTCCATCACATCATTCTCCTAATGA 59.900 38.462 3.13 3.13 40.50 2.57
191 192 7.166851 GTCCATCACATCATTCTCCTAATGAT 58.833 38.462 7.28 7.28 45.40 2.45
200 201 6.685657 TCATTCTCCTAATGATGTGATCTCG 58.314 40.000 0.00 0.00 32.21 4.04
201 202 6.266330 TCATTCTCCTAATGATGTGATCTCGT 59.734 38.462 0.00 0.00 32.21 4.18
202 203 6.471233 TTCTCCTAATGATGTGATCTCGTT 57.529 37.500 0.00 0.00 0.00 3.85
203 204 7.582667 TTCTCCTAATGATGTGATCTCGTTA 57.417 36.000 0.00 0.00 0.00 3.18
204 205 7.767250 TCTCCTAATGATGTGATCTCGTTAT 57.233 36.000 0.00 0.00 0.00 1.89
205 206 7.821652 TCTCCTAATGATGTGATCTCGTTATC 58.178 38.462 0.00 0.00 0.00 1.75
206 207 7.448469 TCTCCTAATGATGTGATCTCGTTATCA 59.552 37.037 0.00 0.00 33.48 2.15
207 208 7.951591 TCCTAATGATGTGATCTCGTTATCAA 58.048 34.615 4.42 0.00 37.61 2.57
208 209 8.588472 TCCTAATGATGTGATCTCGTTATCAAT 58.412 33.333 4.42 0.00 37.61 2.57
209 210 8.654215 CCTAATGATGTGATCTCGTTATCAATG 58.346 37.037 4.42 0.00 37.61 2.82
210 211 9.415544 CTAATGATGTGATCTCGTTATCAATGA 57.584 33.333 4.42 0.00 37.61 2.57
211 212 7.649370 ATGATGTGATCTCGTTATCAATGAC 57.351 36.000 4.42 0.00 37.61 3.06
212 213 6.572519 TGATGTGATCTCGTTATCAATGACA 58.427 36.000 4.42 0.00 37.61 3.58
213 214 7.212274 TGATGTGATCTCGTTATCAATGACAT 58.788 34.615 4.42 0.00 37.61 3.06
214 215 7.383300 TGATGTGATCTCGTTATCAATGACATC 59.617 37.037 15.71 15.71 37.61 3.06
215 216 5.985530 TGTGATCTCGTTATCAATGACATCC 59.014 40.000 4.42 0.00 37.61 3.51
216 217 5.985530 GTGATCTCGTTATCAATGACATCCA 59.014 40.000 4.42 0.00 37.61 3.41
217 218 6.479990 GTGATCTCGTTATCAATGACATCCAA 59.520 38.462 4.42 0.00 37.61 3.53
218 219 7.172190 GTGATCTCGTTATCAATGACATCCAAT 59.828 37.037 4.42 0.00 37.61 3.16
219 220 6.849588 TCTCGTTATCAATGACATCCAATG 57.150 37.500 0.00 0.00 0.00 2.82
231 232 4.428294 ACATCCAATGTCCATAGTCAGG 57.572 45.455 0.00 0.00 39.92 3.86
232 233 4.040047 ACATCCAATGTCCATAGTCAGGA 58.960 43.478 0.00 0.00 39.92 3.86
233 234 4.474651 ACATCCAATGTCCATAGTCAGGAA 59.525 41.667 0.00 0.00 39.92 3.36
234 235 5.044919 ACATCCAATGTCCATAGTCAGGAAA 60.045 40.000 0.00 0.00 39.92 3.13
235 236 4.843728 TCCAATGTCCATAGTCAGGAAAC 58.156 43.478 0.00 0.00 36.80 2.78
236 237 3.947834 CCAATGTCCATAGTCAGGAAACC 59.052 47.826 0.00 0.00 36.80 3.27
237 238 4.567537 CCAATGTCCATAGTCAGGAAACCA 60.568 45.833 0.00 0.00 36.80 3.67
238 239 5.195940 CAATGTCCATAGTCAGGAAACCAT 58.804 41.667 0.00 0.00 36.80 3.55
239 240 4.220693 TGTCCATAGTCAGGAAACCATG 57.779 45.455 0.00 0.00 36.80 3.66
240 241 3.843619 TGTCCATAGTCAGGAAACCATGA 59.156 43.478 0.00 0.00 36.80 3.07
241 242 4.192317 GTCCATAGTCAGGAAACCATGAC 58.808 47.826 0.00 2.44 44.97 3.06
248 249 5.091261 GTCAGGAAACCATGACTATCTGT 57.909 43.478 0.00 0.00 42.06 3.41
249 250 5.491982 GTCAGGAAACCATGACTATCTGTT 58.508 41.667 0.00 0.00 42.06 3.16
250 251 5.352569 GTCAGGAAACCATGACTATCTGTTG 59.647 44.000 0.00 0.00 42.06 3.33
251 252 5.248248 TCAGGAAACCATGACTATCTGTTGA 59.752 40.000 0.00 0.00 0.00 3.18
252 253 6.070021 TCAGGAAACCATGACTATCTGTTGAT 60.070 38.462 0.00 0.00 36.74 2.57
253 254 6.259608 CAGGAAACCATGACTATCTGTTGATC 59.740 42.308 0.00 0.00 34.32 2.92
254 255 6.070021 AGGAAACCATGACTATCTGTTGATCA 60.070 38.462 0.00 0.00 34.32 2.92
255 256 6.599244 GGAAACCATGACTATCTGTTGATCAA 59.401 38.462 3.38 3.38 34.32 2.57
256 257 6.992063 AACCATGACTATCTGTTGATCAAC 57.008 37.500 28.10 28.10 41.50 3.18
257 258 5.111989 ACCATGACTATCTGTTGATCAACG 58.888 41.667 28.55 23.04 43.94 4.10
258 259 5.105351 ACCATGACTATCTGTTGATCAACGA 60.105 40.000 28.55 26.46 43.94 3.85
259 260 5.461407 CCATGACTATCTGTTGATCAACGAG 59.539 44.000 28.55 24.84 43.94 4.18
260 261 4.424626 TGACTATCTGTTGATCAACGAGC 58.575 43.478 28.55 18.56 43.94 5.03
261 262 4.158579 TGACTATCTGTTGATCAACGAGCT 59.841 41.667 28.55 20.51 43.94 4.09
262 263 5.357032 TGACTATCTGTTGATCAACGAGCTA 59.643 40.000 28.55 20.52 43.94 3.32
263 264 5.826586 ACTATCTGTTGATCAACGAGCTAG 58.173 41.667 28.55 27.18 43.94 3.42
264 265 4.727507 ATCTGTTGATCAACGAGCTAGT 57.272 40.909 28.55 13.33 43.94 2.57
265 266 4.098055 TCTGTTGATCAACGAGCTAGTC 57.902 45.455 28.55 6.98 43.94 2.59
266 267 3.506067 TCTGTTGATCAACGAGCTAGTCA 59.494 43.478 28.55 10.88 43.94 3.41
267 268 4.022329 TCTGTTGATCAACGAGCTAGTCAA 60.022 41.667 28.55 10.18 43.94 3.18
268 269 3.987868 TGTTGATCAACGAGCTAGTCAAC 59.012 43.478 28.55 16.99 43.94 3.18
269 270 4.238514 GTTGATCAACGAGCTAGTCAACT 58.761 43.478 22.09 0.00 41.13 3.16
270 271 5.048294 TGTTGATCAACGAGCTAGTCAACTA 60.048 40.000 28.55 7.59 43.38 2.24
271 272 5.236655 TGATCAACGAGCTAGTCAACTAG 57.763 43.478 11.99 11.99 46.63 2.57
272 273 4.941873 TGATCAACGAGCTAGTCAACTAGA 59.058 41.667 19.03 0.00 46.80 2.43
273 274 4.948608 TCAACGAGCTAGTCAACTAGAG 57.051 45.455 19.03 11.89 46.80 2.43
274 275 3.690139 TCAACGAGCTAGTCAACTAGAGG 59.310 47.826 19.03 10.05 46.80 3.69
275 276 2.018515 ACGAGCTAGTCAACTAGAGGC 58.981 52.381 19.03 6.58 46.80 4.70
276 277 2.294074 CGAGCTAGTCAACTAGAGGCT 58.706 52.381 19.03 10.84 46.80 4.58
277 278 2.685897 CGAGCTAGTCAACTAGAGGCTT 59.314 50.000 19.03 1.20 46.80 4.35
278 279 3.878103 CGAGCTAGTCAACTAGAGGCTTA 59.122 47.826 19.03 0.00 46.80 3.09
279 280 4.517453 CGAGCTAGTCAACTAGAGGCTTAT 59.483 45.833 19.03 0.00 46.80 1.73
280 281 5.561919 CGAGCTAGTCAACTAGAGGCTTATG 60.562 48.000 19.03 3.52 46.80 1.90
281 282 5.450453 AGCTAGTCAACTAGAGGCTTATGA 58.550 41.667 19.03 0.00 46.80 2.15
282 283 5.534654 AGCTAGTCAACTAGAGGCTTATGAG 59.465 44.000 19.03 0.00 46.80 2.90
283 284 5.278758 GCTAGTCAACTAGAGGCTTATGAGG 60.279 48.000 19.03 0.00 46.80 3.86
284 285 3.964031 AGTCAACTAGAGGCTTATGAGGG 59.036 47.826 0.00 0.00 0.00 4.30
285 286 3.961408 GTCAACTAGAGGCTTATGAGGGA 59.039 47.826 0.00 0.00 0.00 4.20
286 287 3.961408 TCAACTAGAGGCTTATGAGGGAC 59.039 47.826 0.00 0.00 0.00 4.46
288 289 4.273300 ACTAGAGGCTTATGAGGGACTT 57.727 45.455 0.00 0.00 41.55 3.01
289 290 3.964031 ACTAGAGGCTTATGAGGGACTTG 59.036 47.826 0.00 0.00 41.55 3.16
290 291 2.839228 AGAGGCTTATGAGGGACTTGT 58.161 47.619 0.00 0.00 41.55 3.16
291 292 3.185455 AGAGGCTTATGAGGGACTTGTT 58.815 45.455 0.00 0.00 41.55 2.83
292 293 3.054802 AGAGGCTTATGAGGGACTTGTTG 60.055 47.826 0.00 0.00 41.55 3.33
293 294 2.025887 AGGCTTATGAGGGACTTGTTGG 60.026 50.000 0.00 0.00 41.55 3.77
294 295 2.290960 GGCTTATGAGGGACTTGTTGGT 60.291 50.000 0.00 0.00 41.55 3.67
295 296 2.749621 GCTTATGAGGGACTTGTTGGTG 59.250 50.000 0.00 0.00 41.55 4.17
296 297 3.810743 GCTTATGAGGGACTTGTTGGTGT 60.811 47.826 0.00 0.00 41.55 4.16
297 298 2.568623 ATGAGGGACTTGTTGGTGTC 57.431 50.000 0.00 0.00 41.55 3.67
298 299 1.507140 TGAGGGACTTGTTGGTGTCT 58.493 50.000 0.00 0.00 41.55 3.41
299 300 1.140852 TGAGGGACTTGTTGGTGTCTG 59.859 52.381 0.00 0.00 41.55 3.51
300 301 1.141053 GAGGGACTTGTTGGTGTCTGT 59.859 52.381 0.00 0.00 41.55 3.41
301 302 1.564348 AGGGACTTGTTGGTGTCTGTT 59.436 47.619 0.00 0.00 27.25 3.16
302 303 2.775384 AGGGACTTGTTGGTGTCTGTTA 59.225 45.455 0.00 0.00 27.25 2.41
303 304 3.394606 AGGGACTTGTTGGTGTCTGTTAT 59.605 43.478 0.00 0.00 27.25 1.89
304 305 4.141251 AGGGACTTGTTGGTGTCTGTTATT 60.141 41.667 0.00 0.00 27.25 1.40
305 306 4.215613 GGGACTTGTTGGTGTCTGTTATTC 59.784 45.833 0.00 0.00 34.01 1.75
306 307 4.819630 GGACTTGTTGGTGTCTGTTATTCA 59.180 41.667 0.00 0.00 34.01 2.57
307 308 5.277828 GGACTTGTTGGTGTCTGTTATTCAC 60.278 44.000 0.00 0.00 34.01 3.18
308 309 5.189928 ACTTGTTGGTGTCTGTTATTCACA 58.810 37.500 0.00 0.00 34.27 3.58
309 310 5.065988 ACTTGTTGGTGTCTGTTATTCACAC 59.934 40.000 0.00 0.00 34.27 3.82
310 311 4.518249 TGTTGGTGTCTGTTATTCACACA 58.482 39.130 4.00 0.00 34.27 3.72
311 312 5.129634 TGTTGGTGTCTGTTATTCACACAT 58.870 37.500 4.00 0.00 34.27 3.21
312 313 5.008514 TGTTGGTGTCTGTTATTCACACATG 59.991 40.000 4.00 0.00 34.27 3.21
313 314 4.713553 TGGTGTCTGTTATTCACACATGT 58.286 39.130 0.00 0.00 34.27 3.21
314 315 5.859495 TGGTGTCTGTTATTCACACATGTA 58.141 37.500 0.00 0.00 34.27 2.29
315 316 6.472016 TGGTGTCTGTTATTCACACATGTAT 58.528 36.000 0.00 0.00 34.27 2.29
316 317 6.939730 TGGTGTCTGTTATTCACACATGTATT 59.060 34.615 0.00 0.00 34.27 1.89
317 318 8.097662 TGGTGTCTGTTATTCACACATGTATTA 58.902 33.333 0.00 0.00 34.27 0.98
318 319 8.388103 GGTGTCTGTTATTCACACATGTATTAC 58.612 37.037 0.00 0.00 34.27 1.89
319 320 8.108172 GTGTCTGTTATTCACACATGTATTACG 58.892 37.037 0.00 0.00 28.67 3.18
320 321 8.030106 TGTCTGTTATTCACACATGTATTACGA 58.970 33.333 0.00 0.00 0.00 3.43
321 322 9.031360 GTCTGTTATTCACACATGTATTACGAT 57.969 33.333 0.00 0.00 0.00 3.73
322 323 9.594478 TCTGTTATTCACACATGTATTACGATT 57.406 29.630 0.00 0.00 0.00 3.34
325 326 9.646336 GTTATTCACACATGTATTACGATTTCC 57.354 33.333 0.00 0.00 0.00 3.13
326 327 5.959652 TCACACATGTATTACGATTTCCG 57.040 39.130 0.00 0.00 45.44 4.30
327 328 4.806775 TCACACATGTATTACGATTTCCGG 59.193 41.667 0.00 0.00 43.93 5.14
328 329 4.806775 CACACATGTATTACGATTTCCGGA 59.193 41.667 0.00 0.00 43.93 5.14
329 330 5.465390 CACACATGTATTACGATTTCCGGAT 59.535 40.000 4.15 0.00 43.93 4.18
330 331 6.643360 CACACATGTATTACGATTTCCGGATA 59.357 38.462 4.15 0.00 43.93 2.59
331 332 7.170151 CACACATGTATTACGATTTCCGGATAA 59.830 37.037 4.15 0.00 43.93 1.75
332 333 7.170320 ACACATGTATTACGATTTCCGGATAAC 59.830 37.037 4.15 0.00 43.93 1.89
333 334 7.170151 CACATGTATTACGATTTCCGGATAACA 59.830 37.037 4.15 0.00 43.93 2.41
334 335 7.170320 ACATGTATTACGATTTCCGGATAACAC 59.830 37.037 4.15 0.00 43.93 3.32
335 336 6.571605 TGTATTACGATTTCCGGATAACACA 58.428 36.000 4.15 3.08 43.93 3.72
336 337 7.040494 TGTATTACGATTTCCGGATAACACAA 58.960 34.615 4.15 0.00 43.93 3.33
337 338 7.711772 TGTATTACGATTTCCGGATAACACAAT 59.288 33.333 4.15 0.00 43.93 2.71
338 339 9.195411 GTATTACGATTTCCGGATAACACAATA 57.805 33.333 4.15 3.57 43.93 1.90
339 340 8.842358 ATTACGATTTCCGGATAACACAATAT 57.158 30.769 4.15 0.00 43.93 1.28
340 341 9.932207 ATTACGATTTCCGGATAACACAATATA 57.068 29.630 4.15 0.00 43.93 0.86
341 342 7.884816 ACGATTTCCGGATAACACAATATAG 57.115 36.000 4.15 0.00 43.93 1.31
342 343 6.367969 ACGATTTCCGGATAACACAATATAGC 59.632 38.462 4.15 0.00 43.93 2.97
343 344 6.367695 CGATTTCCGGATAACACAATATAGCA 59.632 38.462 4.15 0.00 33.91 3.49
344 345 7.064609 CGATTTCCGGATAACACAATATAGCAT 59.935 37.037 4.15 0.00 33.91 3.79
345 346 7.433708 TTTCCGGATAACACAATATAGCATG 57.566 36.000 4.15 0.00 0.00 4.06
346 347 6.353404 TCCGGATAACACAATATAGCATGA 57.647 37.500 0.00 0.00 0.00 3.07
347 348 6.764379 TCCGGATAACACAATATAGCATGAA 58.236 36.000 0.00 0.00 0.00 2.57
348 349 7.394016 TCCGGATAACACAATATAGCATGAAT 58.606 34.615 0.00 0.00 0.00 2.57
349 350 8.536175 TCCGGATAACACAATATAGCATGAATA 58.464 33.333 0.00 0.00 0.00 1.75
350 351 9.161629 CCGGATAACACAATATAGCATGAATAA 57.838 33.333 0.00 0.00 0.00 1.40
409 410 9.981460 ATAATCCTTTTATTATTGCCTCTAGGG 57.019 33.333 0.00 0.00 29.60 3.53
438 439 3.731652 CAACAGATTGGCCTTGTGAAA 57.268 42.857 3.32 0.00 31.63 2.69
439 440 3.383761 CAACAGATTGGCCTTGTGAAAC 58.616 45.455 3.32 0.00 31.89 2.78
440 441 2.949447 ACAGATTGGCCTTGTGAAACT 58.051 42.857 3.32 0.00 38.04 2.66
441 442 2.887152 ACAGATTGGCCTTGTGAAACTC 59.113 45.455 3.32 0.00 38.04 3.01
442 443 2.886523 CAGATTGGCCTTGTGAAACTCA 59.113 45.455 3.32 0.00 38.04 3.41
443 444 3.057736 CAGATTGGCCTTGTGAAACTCAG 60.058 47.826 3.32 0.00 38.04 3.35
451 452 2.084610 TGTGAAACTCAGCTCATCGG 57.915 50.000 0.00 0.00 38.04 4.18
500 509 7.201911 CCCTACTTTCTTTCTTGAACAACCAAT 60.202 37.037 0.00 0.00 0.00 3.16
501 510 8.197439 CCTACTTTCTTTCTTGAACAACCAATT 58.803 33.333 0.00 0.00 0.00 2.32
507 516 6.321181 TCTTTCTTGAACAACCAATTGCTACT 59.679 34.615 0.00 0.00 39.66 2.57
572 588 4.526438 AATTAGCTAGGTGCCTCCAAAT 57.474 40.909 4.27 0.00 44.23 2.32
575 603 3.567478 AGCTAGGTGCCTCCAAATAAG 57.433 47.619 0.00 0.00 44.23 1.73
577 605 3.267031 AGCTAGGTGCCTCCAAATAAGTT 59.733 43.478 0.00 0.00 44.23 2.66
592 620 7.505585 TCCAAATAAGTTGTTGGTTCAGATTCT 59.494 33.333 15.87 0.00 44.01 2.40
606 634 2.975851 CAGATTCTGCACGTTTCTTTGC 59.024 45.455 0.00 0.00 39.33 3.68
614 642 5.871465 TGCACGTTTCTTTGCATTCTATA 57.129 34.783 0.00 0.00 43.79 1.31
646 674 1.280133 TGTTCAGGCTCTGCTTGCTAT 59.720 47.619 0.00 0.00 35.58 2.97
647 675 2.501316 TGTTCAGGCTCTGCTTGCTATA 59.499 45.455 0.00 0.00 35.58 1.31
648 676 2.869192 GTTCAGGCTCTGCTTGCTATAC 59.131 50.000 0.00 0.00 35.58 1.47
650 678 2.768527 TCAGGCTCTGCTTGCTATACTT 59.231 45.455 0.00 0.00 35.58 2.24
651 679 3.960755 TCAGGCTCTGCTTGCTATACTTA 59.039 43.478 0.00 0.00 35.58 2.24
652 680 4.405680 TCAGGCTCTGCTTGCTATACTTAA 59.594 41.667 0.00 0.00 35.58 1.85
658 1290 7.604164 GGCTCTGCTTGCTATACTTAATTATGA 59.396 37.037 5.43 0.00 0.00 2.15
701 1333 3.009115 ATGTGGCCCGCCTGTAGT 61.009 61.111 7.35 0.00 36.94 2.73
732 1365 8.777865 TTTTTCTCGATGAGTGAACAGATATT 57.222 30.769 0.00 0.00 32.74 1.28
734 1367 8.777865 TTTCTCGATGAGTGAACAGATATTTT 57.222 30.769 0.00 0.00 32.74 1.82
735 1368 7.993821 TCTCGATGAGTGAACAGATATTTTC 57.006 36.000 0.00 0.00 0.00 2.29
736 1369 7.776107 TCTCGATGAGTGAACAGATATTTTCT 58.224 34.615 0.00 0.00 33.90 2.52
738 1371 8.858003 TCGATGAGTGAACAGATATTTTCTAC 57.142 34.615 0.00 0.00 31.77 2.59
739 1372 8.687242 TCGATGAGTGAACAGATATTTTCTACT 58.313 33.333 0.00 0.00 31.77 2.57
740 1373 9.307121 CGATGAGTGAACAGATATTTTCTACTT 57.693 33.333 0.00 0.00 31.77 2.24
742 1375 9.950496 ATGAGTGAACAGATATTTTCTACTTGT 57.050 29.630 0.00 0.00 31.77 3.16
785 1426 2.880268 TCTCCATGCTTGTGAACAACAG 59.120 45.455 0.00 0.00 40.74 3.16
793 1434 6.389830 TGCTTGTGAACAACAGACAATTAT 57.610 33.333 0.00 0.00 40.74 1.28
800 1441 7.009999 TGTGAACAACAGACAATTATGTTTTGC 59.990 33.333 1.30 0.00 37.54 3.68
875 1529 1.899814 GTGTCTGTCCCCAGTGTCATA 59.100 52.381 0.00 0.00 39.82 2.15
980 1652 9.302345 GATATGTATTACCTGATGATTGGTACG 57.698 37.037 0.00 0.00 38.40 3.67
1014 1692 1.272816 TGTTCGATGGAGGACCTACCA 60.273 52.381 13.16 13.16 42.04 3.25
1045 1723 3.594134 GTGACAGAGATTCTCAACAGGG 58.406 50.000 15.83 1.26 32.06 4.45
1157 1835 0.613260 TCCGGTCTTTGCACTGCTAT 59.387 50.000 0.00 0.00 0.00 2.97
1223 1901 7.094634 GCAGAAAGTGGAAATTGATTACTCTGA 60.095 37.037 0.00 0.00 0.00 3.27
1286 1964 5.470098 GCCTTTCTGTGTTTTCATCTCACTA 59.530 40.000 0.00 0.00 33.82 2.74
1317 1995 3.117663 TGGTTGACCTCACCTTAAGCTTT 60.118 43.478 3.20 0.00 36.82 3.51
1402 2080 1.002468 CGCTCAACTCCACACCAAAAG 60.002 52.381 0.00 0.00 0.00 2.27
1418 2097 3.320541 CCAAAAGTAACATCAGTTGGGCA 59.679 43.478 0.00 0.00 38.69 5.36
1434 2113 0.169009 GGCATTTCTCGGTTGCAGTC 59.831 55.000 0.00 0.00 38.12 3.51
1648 2327 7.619302 AGGGCAAAAGAGGAAAATATGATTGTA 59.381 33.333 0.00 0.00 0.00 2.41
1690 2372 0.316278 CTCCTCGTACGATGCTCACG 60.316 60.000 19.87 4.89 37.03 4.35
1798 2480 5.470777 CGTGTTGTCCTAGGGAAATGTAAAA 59.529 40.000 9.46 0.00 31.38 1.52
1823 2505 2.951642 TGGAGAAACTTTGCCTTGAGTG 59.048 45.455 0.00 0.00 0.00 3.51
1833 2515 0.740737 GCCTTGAGTGTGTTTGTGCT 59.259 50.000 0.00 0.00 0.00 4.40
1871 2553 4.871933 TGATTGCATTATCTCGGAGCTA 57.128 40.909 0.00 0.00 0.00 3.32
1911 2593 3.327757 TCTCACTTTGGCTCAACCTACAT 59.672 43.478 0.00 0.00 40.22 2.29
1952 2634 2.812011 GCTATTGTGAAACCAGGACGTT 59.188 45.455 0.00 0.00 34.36 3.99
1967 2649 7.388437 ACCAGGACGTTATTTACTGATAACAA 58.612 34.615 0.00 0.00 40.75 2.83
1986 2668 4.422984 ACAACCTTTACACTCTAGCCCTA 58.577 43.478 0.00 0.00 0.00 3.53
2071 2753 7.009179 TCAGAAATAGGATTCACACAAGAGT 57.991 36.000 0.00 0.00 0.00 3.24
2114 2796 1.134694 GCCCGATTCGTGTTCTTGC 59.865 57.895 5.20 0.00 0.00 4.01
2181 2863 2.502947 CTCATCCTCACCACATCTGGAA 59.497 50.000 0.00 0.00 40.55 3.53
2197 2879 6.820656 ACATCTGGAAACACTTCAGCTTATAG 59.179 38.462 0.00 0.00 35.60 1.31
2231 2913 2.203112 TGATGCTGGGATGCGCTC 60.203 61.111 9.73 3.37 35.36 5.03
2461 3144 2.498167 GTCTTGGCGGCTATTGATGAT 58.502 47.619 11.43 0.00 0.00 2.45
2481 3164 5.841810 TGATGTGGTCTCCAAAATTTTCAC 58.158 37.500 0.00 5.91 34.18 3.18
2505 3188 9.282247 CACTATAAATTTGTTGCTGAAGACATC 57.718 33.333 0.00 0.00 0.00 3.06
2540 3225 3.505680 GTGCATCATTGGACAAGGTTGTA 59.494 43.478 8.84 3.03 43.17 2.41
2541 3226 3.505680 TGCATCATTGGACAAGGTTGTAC 59.494 43.478 8.84 0.00 42.43 2.90
2548 3233 1.463444 GGACAAGGTTGTACGCATCAC 59.537 52.381 0.00 0.00 42.43 3.06
2592 3278 4.120589 GGACTTTCTATTGCCTTCTACCG 58.879 47.826 0.00 0.00 0.00 4.02
2668 3367 9.778993 CATCTGGTGAATGAAACTTTAATAGTG 57.221 33.333 0.00 0.00 37.12 2.74
2669 3368 8.918202 TCTGGTGAATGAAACTTTAATAGTGT 57.082 30.769 0.00 0.00 37.12 3.55
3327 4029 1.143838 TCAAGACCCGCCATCGATG 59.856 57.895 18.76 18.76 38.10 3.84
Position MSA Position Penalty Sequence TM GC Self any TH Self end TH Hairpin End Stability
11 12 2.228138 TCACAACGTAACTGGGTGAC 57.772 50.000 0.00 0.00 33.88 3.67
12 13 1.536496 CGTCACAACGTAACTGGGTGA 60.536 52.381 0.00 0.00 43.94 4.02
14 15 3.277652 CGTCACAACGTAACTGGGT 57.722 52.632 0.00 0.00 43.94 4.51
23 24 1.004715 GGTGTACCAAACGTCACAACG 60.005 52.381 5.35 0.00 44.58 4.10
24 25 1.331447 GGGTGTACCAAACGTCACAAC 59.669 52.381 3.11 0.62 39.85 3.32
25 26 1.666054 GGGTGTACCAAACGTCACAA 58.334 50.000 3.11 0.00 39.85 3.33
26 27 3.383092 GGGTGTACCAAACGTCACA 57.617 52.632 3.11 0.00 39.85 3.58
36 37 3.119352 CGTAGGAGTACTTTGGGTGTACC 60.119 52.174 0.00 0.00 40.61 3.34
37 38 4.102035 CGTAGGAGTACTTTGGGTGTAC 57.898 50.000 0.00 0.00 40.19 2.90
54 55 2.291741 GTGTAACTCCCGGATACCGTAG 59.708 54.545 0.73 8.43 46.80 3.51
55 56 2.297701 GTGTAACTCCCGGATACCGTA 58.702 52.381 0.73 0.00 46.80 4.02
56 57 1.106285 GTGTAACTCCCGGATACCGT 58.894 55.000 0.73 0.00 46.80 4.83
57 58 0.029834 CGTGTAACTCCCGGATACCG 59.970 60.000 0.73 3.03 40.38 4.02
58 59 1.392589 TCGTGTAACTCCCGGATACC 58.607 55.000 0.73 0.00 31.75 2.73
59 60 2.883386 AGATCGTGTAACTCCCGGATAC 59.117 50.000 0.73 1.10 31.75 2.24
60 61 3.144506 GAGATCGTGTAACTCCCGGATA 58.855 50.000 0.73 0.00 31.75 2.59
61 62 1.955080 GAGATCGTGTAACTCCCGGAT 59.045 52.381 0.73 0.00 31.75 4.18
62 63 1.340308 TGAGATCGTGTAACTCCCGGA 60.340 52.381 0.73 0.00 31.75 5.14
63 64 1.100510 TGAGATCGTGTAACTCCCGG 58.899 55.000 0.00 0.00 31.75 5.73
64 65 2.543861 CCATGAGATCGTGTAACTCCCG 60.544 54.545 0.00 0.00 31.75 5.14
65 66 2.431057 ACCATGAGATCGTGTAACTCCC 59.569 50.000 0.00 0.00 31.75 4.30
66 67 3.381908 AGACCATGAGATCGTGTAACTCC 59.618 47.826 0.00 0.00 31.75 3.85
67 68 4.640789 AGACCATGAGATCGTGTAACTC 57.359 45.455 0.00 0.00 31.75 3.01
68 69 5.067936 CCTTAGACCATGAGATCGTGTAACT 59.932 44.000 0.00 1.27 31.75 2.24
69 70 5.067413 TCCTTAGACCATGAGATCGTGTAAC 59.933 44.000 0.00 0.00 0.00 2.50
70 71 5.198207 TCCTTAGACCATGAGATCGTGTAA 58.802 41.667 0.00 0.00 0.00 2.41
71 72 4.788679 TCCTTAGACCATGAGATCGTGTA 58.211 43.478 0.00 0.00 0.00 2.90
72 73 3.632333 TCCTTAGACCATGAGATCGTGT 58.368 45.455 0.00 0.00 0.00 4.49
73 74 4.655762 TTCCTTAGACCATGAGATCGTG 57.344 45.455 0.00 0.00 0.00 4.35
74 75 4.100189 CCTTTCCTTAGACCATGAGATCGT 59.900 45.833 0.00 0.00 0.00 3.73
75 76 4.342378 TCCTTTCCTTAGACCATGAGATCG 59.658 45.833 0.00 0.00 0.00 3.69
76 77 5.878406 TCCTTTCCTTAGACCATGAGATC 57.122 43.478 0.00 0.00 0.00 2.75
77 78 7.079048 AGTATCCTTTCCTTAGACCATGAGAT 58.921 38.462 0.00 0.00 0.00 2.75
78 79 6.444704 AGTATCCTTTCCTTAGACCATGAGA 58.555 40.000 0.00 0.00 0.00 3.27
79 80 6.739331 AGTATCCTTTCCTTAGACCATGAG 57.261 41.667 0.00 0.00 0.00 2.90
80 81 6.672218 TCAAGTATCCTTTCCTTAGACCATGA 59.328 38.462 0.00 0.00 0.00 3.07
81 82 6.763610 GTCAAGTATCCTTTCCTTAGACCATG 59.236 42.308 0.00 0.00 0.00 3.66
82 83 6.443849 TGTCAAGTATCCTTTCCTTAGACCAT 59.556 38.462 0.00 0.00 0.00 3.55
83 84 5.783360 TGTCAAGTATCCTTTCCTTAGACCA 59.217 40.000 0.00 0.00 0.00 4.02
84 85 6.295719 TGTCAAGTATCCTTTCCTTAGACC 57.704 41.667 0.00 0.00 0.00 3.85
85 86 7.281100 CCAATGTCAAGTATCCTTTCCTTAGAC 59.719 40.741 0.00 0.00 0.00 2.59
86 87 7.182026 TCCAATGTCAAGTATCCTTTCCTTAGA 59.818 37.037 0.00 0.00 0.00 2.10
87 88 7.338710 TCCAATGTCAAGTATCCTTTCCTTAG 58.661 38.462 0.00 0.00 0.00 2.18
88 89 7.265599 TCCAATGTCAAGTATCCTTTCCTTA 57.734 36.000 0.00 0.00 0.00 2.69
89 90 6.139679 TCCAATGTCAAGTATCCTTTCCTT 57.860 37.500 0.00 0.00 0.00 3.36
90 91 5.779241 TCCAATGTCAAGTATCCTTTCCT 57.221 39.130 0.00 0.00 0.00 3.36
91 92 6.834168 TTTCCAATGTCAAGTATCCTTTCC 57.166 37.500 0.00 0.00 0.00 3.13
92 93 7.886338 AGTTTTCCAATGTCAAGTATCCTTTC 58.114 34.615 0.00 0.00 0.00 2.62
93 94 7.725844 AGAGTTTTCCAATGTCAAGTATCCTTT 59.274 33.333 0.00 0.00 0.00 3.11
94 95 7.234355 AGAGTTTTCCAATGTCAAGTATCCTT 58.766 34.615 0.00 0.00 0.00 3.36
95 96 6.784031 AGAGTTTTCCAATGTCAAGTATCCT 58.216 36.000 0.00 0.00 0.00 3.24
96 97 7.201652 GCTAGAGTTTTCCAATGTCAAGTATCC 60.202 40.741 0.00 0.00 0.00 2.59
97 98 7.334421 TGCTAGAGTTTTCCAATGTCAAGTATC 59.666 37.037 0.00 0.00 0.00 2.24
98 99 7.168219 TGCTAGAGTTTTCCAATGTCAAGTAT 58.832 34.615 0.00 0.00 0.00 2.12
99 100 6.530120 TGCTAGAGTTTTCCAATGTCAAGTA 58.470 36.000 0.00 0.00 0.00 2.24
100 101 5.376625 TGCTAGAGTTTTCCAATGTCAAGT 58.623 37.500 0.00 0.00 0.00 3.16
101 102 5.947228 TGCTAGAGTTTTCCAATGTCAAG 57.053 39.130 0.00 0.00 0.00 3.02
102 103 6.503524 GTTTGCTAGAGTTTTCCAATGTCAA 58.496 36.000 0.00 0.00 0.00 3.18
103 104 5.277779 CGTTTGCTAGAGTTTTCCAATGTCA 60.278 40.000 0.00 0.00 0.00 3.58
104 105 5.049680 TCGTTTGCTAGAGTTTTCCAATGTC 60.050 40.000 0.00 0.00 0.00 3.06
105 106 4.819630 TCGTTTGCTAGAGTTTTCCAATGT 59.180 37.500 0.00 0.00 0.00 2.71
106 107 5.356882 TCGTTTGCTAGAGTTTTCCAATG 57.643 39.130 0.00 0.00 0.00 2.82
107 108 5.531287 AGTTCGTTTGCTAGAGTTTTCCAAT 59.469 36.000 0.00 0.00 0.00 3.16
108 109 4.879545 AGTTCGTTTGCTAGAGTTTTCCAA 59.120 37.500 0.00 0.00 0.00 3.53
109 110 4.448210 AGTTCGTTTGCTAGAGTTTTCCA 58.552 39.130 0.00 0.00 0.00 3.53
110 111 6.723131 ATAGTTCGTTTGCTAGAGTTTTCC 57.277 37.500 0.00 0.00 0.00 3.13
111 112 9.136952 TCTTATAGTTCGTTTGCTAGAGTTTTC 57.863 33.333 0.00 0.00 0.00 2.29
112 113 9.654663 ATCTTATAGTTCGTTTGCTAGAGTTTT 57.345 29.630 0.00 0.00 0.00 2.43
113 114 9.303537 GATCTTATAGTTCGTTTGCTAGAGTTT 57.696 33.333 0.00 0.00 0.00 2.66
114 115 8.688151 AGATCTTATAGTTCGTTTGCTAGAGTT 58.312 33.333 0.00 0.00 0.00 3.01
115 116 8.228035 AGATCTTATAGTTCGTTTGCTAGAGT 57.772 34.615 0.00 0.00 0.00 3.24
116 117 8.963130 CAAGATCTTATAGTTCGTTTGCTAGAG 58.037 37.037 7.86 0.00 0.00 2.43
117 118 8.467598 ACAAGATCTTATAGTTCGTTTGCTAGA 58.532 33.333 7.86 0.00 0.00 2.43
118 119 8.535592 CACAAGATCTTATAGTTCGTTTGCTAG 58.464 37.037 7.86 0.00 0.00 3.42
119 120 7.010183 GCACAAGATCTTATAGTTCGTTTGCTA 59.990 37.037 7.86 0.00 31.29 3.49
120 121 6.183360 GCACAAGATCTTATAGTTCGTTTGCT 60.183 38.462 7.86 0.00 31.29 3.91
121 122 5.960105 GCACAAGATCTTATAGTTCGTTTGC 59.040 40.000 7.86 0.00 28.04 3.68
122 123 7.295952 AGCACAAGATCTTATAGTTCGTTTG 57.704 36.000 7.86 0.00 0.00 2.93
123 124 9.035607 CATAGCACAAGATCTTATAGTTCGTTT 57.964 33.333 7.86 0.00 0.00 3.60
124 125 8.198109 ACATAGCACAAGATCTTATAGTTCGTT 58.802 33.333 7.86 0.00 0.00 3.85
125 126 7.717568 ACATAGCACAAGATCTTATAGTTCGT 58.282 34.615 7.86 0.00 0.00 3.85
126 127 8.581057 AACATAGCACAAGATCTTATAGTTCG 57.419 34.615 7.86 0.00 0.00 3.95
129 130 9.988815 CCTAAACATAGCACAAGATCTTATAGT 57.011 33.333 7.86 0.00 0.00 2.12
133 134 9.330063 CAATCCTAAACATAGCACAAGATCTTA 57.670 33.333 7.86 0.00 0.00 2.10
134 135 7.284034 CCAATCCTAAACATAGCACAAGATCTT 59.716 37.037 0.88 0.88 0.00 2.40
135 136 6.769822 CCAATCCTAAACATAGCACAAGATCT 59.230 38.462 0.00 0.00 0.00 2.75
136 137 6.016777 CCCAATCCTAAACATAGCACAAGATC 60.017 42.308 0.00 0.00 0.00 2.75
137 138 5.829924 CCCAATCCTAAACATAGCACAAGAT 59.170 40.000 0.00 0.00 0.00 2.40
138 139 5.192927 CCCAATCCTAAACATAGCACAAGA 58.807 41.667 0.00 0.00 0.00 3.02
139 140 4.949856 ACCCAATCCTAAACATAGCACAAG 59.050 41.667 0.00 0.00 0.00 3.16
140 141 4.929479 ACCCAATCCTAAACATAGCACAA 58.071 39.130 0.00 0.00 0.00 3.33
141 142 4.227300 AGACCCAATCCTAAACATAGCACA 59.773 41.667 0.00 0.00 0.00 4.57
142 143 4.781934 AGACCCAATCCTAAACATAGCAC 58.218 43.478 0.00 0.00 0.00 4.40
143 144 5.192927 CAAGACCCAATCCTAAACATAGCA 58.807 41.667 0.00 0.00 0.00 3.49
144 145 5.193679 ACAAGACCCAATCCTAAACATAGC 58.806 41.667 0.00 0.00 0.00 2.97
145 146 5.823045 GGACAAGACCCAATCCTAAACATAG 59.177 44.000 0.00 0.00 0.00 2.23
146 147 5.251932 TGGACAAGACCCAATCCTAAACATA 59.748 40.000 0.00 0.00 32.06 2.29
147 148 4.044065 TGGACAAGACCCAATCCTAAACAT 59.956 41.667 0.00 0.00 32.06 2.71
148 149 3.396276 TGGACAAGACCCAATCCTAAACA 59.604 43.478 0.00 0.00 32.06 2.83
149 150 4.028993 TGGACAAGACCCAATCCTAAAC 57.971 45.455 0.00 0.00 32.06 2.01
150 151 4.290985 TGATGGACAAGACCCAATCCTAAA 59.709 41.667 0.00 0.00 37.22 1.85
151 152 3.849574 TGATGGACAAGACCCAATCCTAA 59.150 43.478 0.00 0.00 37.22 2.69
152 153 3.199946 GTGATGGACAAGACCCAATCCTA 59.800 47.826 0.00 0.00 37.22 2.94
153 154 2.025887 GTGATGGACAAGACCCAATCCT 60.026 50.000 0.00 0.00 37.22 3.24
154 155 2.290896 TGTGATGGACAAGACCCAATCC 60.291 50.000 0.00 0.00 37.22 3.01
155 156 3.071874 TGTGATGGACAAGACCCAATC 57.928 47.619 0.00 0.00 37.22 2.67
156 157 3.010472 TGATGTGATGGACAAGACCCAAT 59.990 43.478 0.00 0.00 38.36 3.16
157 158 2.374839 TGATGTGATGGACAAGACCCAA 59.625 45.455 0.00 0.00 38.36 4.12
158 159 1.984424 TGATGTGATGGACAAGACCCA 59.016 47.619 0.00 0.00 38.36 4.51
159 160 2.787473 TGATGTGATGGACAAGACCC 57.213 50.000 0.00 0.00 38.36 4.46
160 161 4.521146 AGAATGATGTGATGGACAAGACC 58.479 43.478 0.00 0.00 38.36 3.85
161 162 4.574013 GGAGAATGATGTGATGGACAAGAC 59.426 45.833 0.00 0.00 38.36 3.01
162 163 4.472470 AGGAGAATGATGTGATGGACAAGA 59.528 41.667 0.00 0.00 38.36 3.02
163 164 4.778579 AGGAGAATGATGTGATGGACAAG 58.221 43.478 0.00 0.00 38.36 3.16
164 165 4.849813 AGGAGAATGATGTGATGGACAA 57.150 40.909 0.00 0.00 38.36 3.18
165 166 5.955961 TTAGGAGAATGATGTGATGGACA 57.044 39.130 0.00 0.00 39.53 4.02
166 167 6.528321 TCATTAGGAGAATGATGTGATGGAC 58.472 40.000 0.00 0.00 32.21 4.02
167 168 6.752285 TCATTAGGAGAATGATGTGATGGA 57.248 37.500 0.00 0.00 32.21 3.41
175 176 7.039152 ACGAGATCACATCATTAGGAGAATGAT 60.039 37.037 6.90 6.90 45.40 2.45
176 177 6.266330 ACGAGATCACATCATTAGGAGAATGA 59.734 38.462 2.66 2.66 40.50 2.57
177 178 6.453943 ACGAGATCACATCATTAGGAGAATG 58.546 40.000 0.00 0.00 0.00 2.67
178 179 6.662865 ACGAGATCACATCATTAGGAGAAT 57.337 37.500 0.00 0.00 0.00 2.40
179 180 6.471233 AACGAGATCACATCATTAGGAGAA 57.529 37.500 0.00 0.00 0.00 2.87
180 181 7.448469 TGATAACGAGATCACATCATTAGGAGA 59.552 37.037 0.00 0.00 30.75 3.71
181 182 7.597386 TGATAACGAGATCACATCATTAGGAG 58.403 38.462 0.00 0.00 30.75 3.69
182 183 7.524717 TGATAACGAGATCACATCATTAGGA 57.475 36.000 0.00 0.00 30.75 2.94
183 184 8.654215 CATTGATAACGAGATCACATCATTAGG 58.346 37.037 0.00 0.00 35.56 2.69
184 185 9.415544 TCATTGATAACGAGATCACATCATTAG 57.584 33.333 0.00 0.00 35.56 1.73
185 186 9.196552 GTCATTGATAACGAGATCACATCATTA 57.803 33.333 0.00 0.00 35.56 1.90
186 187 7.712205 TGTCATTGATAACGAGATCACATCATT 59.288 33.333 0.00 0.00 35.56 2.57
187 188 7.212274 TGTCATTGATAACGAGATCACATCAT 58.788 34.615 0.00 0.00 35.56 2.45
188 189 6.572519 TGTCATTGATAACGAGATCACATCA 58.427 36.000 0.00 0.00 35.56 3.07
189 190 7.148672 GGATGTCATTGATAACGAGATCACATC 60.149 40.741 15.82 15.82 36.17 3.06
190 191 6.648310 GGATGTCATTGATAACGAGATCACAT 59.352 38.462 0.00 4.82 35.56 3.21
191 192 5.985530 GGATGTCATTGATAACGAGATCACA 59.014 40.000 0.00 0.86 35.56 3.58
192 193 5.985530 TGGATGTCATTGATAACGAGATCAC 59.014 40.000 0.00 0.00 35.56 3.06
193 194 6.160576 TGGATGTCATTGATAACGAGATCA 57.839 37.500 0.00 0.00 32.57 2.92
194 195 7.172190 ACATTGGATGTCATTGATAACGAGATC 59.828 37.037 0.00 0.00 39.92 2.75
195 196 6.994496 ACATTGGATGTCATTGATAACGAGAT 59.006 34.615 0.00 0.00 39.92 2.75
196 197 6.348498 ACATTGGATGTCATTGATAACGAGA 58.652 36.000 0.00 0.00 39.92 4.04
197 198 6.609237 ACATTGGATGTCATTGATAACGAG 57.391 37.500 0.00 0.00 39.92 4.18
211 212 4.694760 TCCTGACTATGGACATTGGATG 57.305 45.455 0.00 0.00 0.00 3.51
212 213 5.440610 GTTTCCTGACTATGGACATTGGAT 58.559 41.667 0.00 0.00 32.65 3.41
213 214 4.324254 GGTTTCCTGACTATGGACATTGGA 60.324 45.833 0.00 0.00 32.65 3.53
214 215 3.947834 GGTTTCCTGACTATGGACATTGG 59.052 47.826 0.00 0.00 32.65 3.16
215 216 4.588899 TGGTTTCCTGACTATGGACATTG 58.411 43.478 0.00 0.00 32.65 2.82
216 217 4.927267 TGGTTTCCTGACTATGGACATT 57.073 40.909 0.00 0.00 32.65 2.71
217 218 4.474651 TCATGGTTTCCTGACTATGGACAT 59.525 41.667 0.00 0.00 38.56 3.06
218 219 3.843619 TCATGGTTTCCTGACTATGGACA 59.156 43.478 0.00 0.00 38.56 4.02
219 220 4.192317 GTCATGGTTTCCTGACTATGGAC 58.808 47.826 0.00 0.00 38.56 4.02
220 221 4.487714 GTCATGGTTTCCTGACTATGGA 57.512 45.455 0.00 0.00 38.56 3.41
226 227 5.091261 ACAGATAGTCATGGTTTCCTGAC 57.909 43.478 10.65 8.96 41.65 3.51
227 228 5.248248 TCAACAGATAGTCATGGTTTCCTGA 59.752 40.000 10.65 0.00 0.00 3.86
228 229 5.491070 TCAACAGATAGTCATGGTTTCCTG 58.509 41.667 0.00 0.00 0.00 3.86
229 230 5.762179 TCAACAGATAGTCATGGTTTCCT 57.238 39.130 0.00 0.00 0.00 3.36
230 231 6.115446 TGATCAACAGATAGTCATGGTTTCC 58.885 40.000 0.00 0.00 0.00 3.13
231 232 7.467623 GTTGATCAACAGATAGTCATGGTTTC 58.532 38.462 29.43 0.00 40.84 2.78
232 233 6.092670 CGTTGATCAACAGATAGTCATGGTTT 59.907 38.462 32.06 0.00 41.20 3.27
233 234 5.582269 CGTTGATCAACAGATAGTCATGGTT 59.418 40.000 32.06 0.00 41.20 3.67
234 235 5.105351 TCGTTGATCAACAGATAGTCATGGT 60.105 40.000 32.06 0.00 41.20 3.55
235 236 5.351458 TCGTTGATCAACAGATAGTCATGG 58.649 41.667 32.06 15.04 41.20 3.66
236 237 5.051173 GCTCGTTGATCAACAGATAGTCATG 60.051 44.000 32.06 18.25 41.20 3.07
237 238 5.046529 GCTCGTTGATCAACAGATAGTCAT 58.953 41.667 32.06 0.00 41.20 3.06
238 239 4.158579 AGCTCGTTGATCAACAGATAGTCA 59.841 41.667 32.06 11.38 41.20 3.41
239 240 4.677584 AGCTCGTTGATCAACAGATAGTC 58.322 43.478 32.06 19.15 41.20 2.59
240 241 4.727507 AGCTCGTTGATCAACAGATAGT 57.272 40.909 32.06 16.47 41.20 2.12
241 242 5.826586 ACTAGCTCGTTGATCAACAGATAG 58.173 41.667 33.05 33.05 40.27 2.08
242 243 5.357032 TGACTAGCTCGTTGATCAACAGATA 59.643 40.000 32.06 26.63 41.20 1.98
243 244 4.158579 TGACTAGCTCGTTGATCAACAGAT 59.841 41.667 32.06 26.87 41.20 2.90
244 245 3.506067 TGACTAGCTCGTTGATCAACAGA 59.494 43.478 32.06 26.81 41.20 3.41
245 246 3.838120 TGACTAGCTCGTTGATCAACAG 58.162 45.455 32.06 26.93 41.20 3.16
246 247 3.934457 TGACTAGCTCGTTGATCAACA 57.066 42.857 32.06 20.24 41.20 3.33
247 248 4.238514 AGTTGACTAGCTCGTTGATCAAC 58.761 43.478 25.68 25.68 43.94 3.18
248 249 4.521130 AGTTGACTAGCTCGTTGATCAA 57.479 40.909 3.38 3.38 0.00 2.57
249 250 4.941873 TCTAGTTGACTAGCTCGTTGATCA 59.058 41.667 12.30 0.00 44.24 2.92
250 251 5.487153 TCTAGTTGACTAGCTCGTTGATC 57.513 43.478 12.30 0.00 44.24 2.92
251 252 4.336993 CCTCTAGTTGACTAGCTCGTTGAT 59.663 45.833 12.30 0.00 44.24 2.57
252 253 3.690139 CCTCTAGTTGACTAGCTCGTTGA 59.310 47.826 12.30 0.00 44.24 3.18
253 254 3.732471 GCCTCTAGTTGACTAGCTCGTTG 60.732 52.174 12.30 0.75 44.24 4.10
254 255 2.424246 GCCTCTAGTTGACTAGCTCGTT 59.576 50.000 12.30 0.00 44.24 3.85
255 256 2.018515 GCCTCTAGTTGACTAGCTCGT 58.981 52.381 12.30 0.00 44.24 4.18
256 257 2.294074 AGCCTCTAGTTGACTAGCTCG 58.706 52.381 12.30 0.00 44.24 5.03
257 258 5.533154 TCATAAGCCTCTAGTTGACTAGCTC 59.467 44.000 12.30 5.16 44.24 4.09
258 259 5.450453 TCATAAGCCTCTAGTTGACTAGCT 58.550 41.667 12.30 5.64 44.24 3.32
259 260 5.278758 CCTCATAAGCCTCTAGTTGACTAGC 60.279 48.000 12.30 3.61 44.24 3.42
260 261 5.242838 CCCTCATAAGCCTCTAGTTGACTAG 59.757 48.000 11.14 11.14 45.57 2.57
261 262 5.103643 TCCCTCATAAGCCTCTAGTTGACTA 60.104 44.000 0.00 0.00 0.00 2.59
262 263 3.964031 CCCTCATAAGCCTCTAGTTGACT 59.036 47.826 0.00 0.00 0.00 3.41
263 264 3.961408 TCCCTCATAAGCCTCTAGTTGAC 59.039 47.826 0.00 0.00 0.00 3.18
264 265 3.961408 GTCCCTCATAAGCCTCTAGTTGA 59.039 47.826 0.00 0.00 0.00 3.18
265 266 3.964031 AGTCCCTCATAAGCCTCTAGTTG 59.036 47.826 0.00 0.00 0.00 3.16
266 267 4.273300 AGTCCCTCATAAGCCTCTAGTT 57.727 45.455 0.00 0.00 0.00 2.24
267 268 3.964031 CAAGTCCCTCATAAGCCTCTAGT 59.036 47.826 0.00 0.00 0.00 2.57
268 269 3.964031 ACAAGTCCCTCATAAGCCTCTAG 59.036 47.826 0.00 0.00 0.00 2.43
269 270 3.995636 ACAAGTCCCTCATAAGCCTCTA 58.004 45.455 0.00 0.00 0.00 2.43
270 271 2.839228 ACAAGTCCCTCATAAGCCTCT 58.161 47.619 0.00 0.00 0.00 3.69
271 272 3.274288 CAACAAGTCCCTCATAAGCCTC 58.726 50.000 0.00 0.00 0.00 4.70
272 273 2.025887 CCAACAAGTCCCTCATAAGCCT 60.026 50.000 0.00 0.00 0.00 4.58
273 274 2.290960 ACCAACAAGTCCCTCATAAGCC 60.291 50.000 0.00 0.00 0.00 4.35
274 275 2.749621 CACCAACAAGTCCCTCATAAGC 59.250 50.000 0.00 0.00 0.00 3.09
275 276 4.003648 GACACCAACAAGTCCCTCATAAG 58.996 47.826 0.00 0.00 0.00 1.73
276 277 3.650942 AGACACCAACAAGTCCCTCATAA 59.349 43.478 0.00 0.00 35.38 1.90
277 278 3.007940 CAGACACCAACAAGTCCCTCATA 59.992 47.826 0.00 0.00 35.38 2.15
278 279 2.057922 AGACACCAACAAGTCCCTCAT 58.942 47.619 0.00 0.00 35.38 2.90
279 280 1.140852 CAGACACCAACAAGTCCCTCA 59.859 52.381 0.00 0.00 35.38 3.86
280 281 1.141053 ACAGACACCAACAAGTCCCTC 59.859 52.381 0.00 0.00 35.38 4.30
281 282 1.213296 ACAGACACCAACAAGTCCCT 58.787 50.000 0.00 0.00 35.38 4.20
282 283 2.052782 AACAGACACCAACAAGTCCC 57.947 50.000 0.00 0.00 35.38 4.46
283 284 4.819630 TGAATAACAGACACCAACAAGTCC 59.180 41.667 0.00 0.00 35.38 3.85
284 285 5.295787 TGTGAATAACAGACACCAACAAGTC 59.704 40.000 0.00 0.00 33.78 3.01
285 286 5.065988 GTGTGAATAACAGACACCAACAAGT 59.934 40.000 0.00 0.00 41.55 3.16
286 287 5.065859 TGTGTGAATAACAGACACCAACAAG 59.934 40.000 0.00 0.00 45.56 3.16
287 288 4.944317 TGTGTGAATAACAGACACCAACAA 59.056 37.500 0.00 0.00 45.56 2.83
288 289 4.518249 TGTGTGAATAACAGACACCAACA 58.482 39.130 0.00 0.00 45.56 3.33
295 296 8.402326 TCGTAATACATGTGTGAATAACAGAC 57.598 34.615 9.11 0.00 40.26 3.51
296 297 9.594478 AATCGTAATACATGTGTGAATAACAGA 57.406 29.630 9.11 0.00 40.26 3.41
299 300 9.646336 GGAAATCGTAATACATGTGTGAATAAC 57.354 33.333 9.11 0.00 0.00 1.89
300 301 8.544597 CGGAAATCGTAATACATGTGTGAATAA 58.455 33.333 9.11 0.00 0.00 1.40
301 302 7.170151 CCGGAAATCGTAATACATGTGTGAATA 59.830 37.037 9.11 0.00 37.11 1.75
302 303 6.018262 CCGGAAATCGTAATACATGTGTGAAT 60.018 38.462 9.11 0.00 37.11 2.57
303 304 5.292345 CCGGAAATCGTAATACATGTGTGAA 59.708 40.000 9.11 0.00 37.11 3.18
304 305 4.806775 CCGGAAATCGTAATACATGTGTGA 59.193 41.667 9.11 0.00 37.11 3.58
305 306 4.806775 TCCGGAAATCGTAATACATGTGTG 59.193 41.667 9.11 0.00 37.11 3.82
306 307 5.013568 TCCGGAAATCGTAATACATGTGT 57.986 39.130 9.11 0.00 37.11 3.72
307 308 7.170151 TGTTATCCGGAAATCGTAATACATGTG 59.830 37.037 9.01 0.00 37.11 3.21
308 309 7.170320 GTGTTATCCGGAAATCGTAATACATGT 59.830 37.037 9.01 2.69 37.11 3.21
309 310 7.170151 TGTGTTATCCGGAAATCGTAATACATG 59.830 37.037 9.01 0.00 31.67 3.21
310 311 7.211573 TGTGTTATCCGGAAATCGTAATACAT 58.788 34.615 9.01 0.00 31.67 2.29
311 312 6.571605 TGTGTTATCCGGAAATCGTAATACA 58.428 36.000 9.01 13.79 33.00 2.29
312 313 7.467557 TTGTGTTATCCGGAAATCGTAATAC 57.532 36.000 9.01 11.23 37.11 1.89
313 314 9.932207 ATATTGTGTTATCCGGAAATCGTAATA 57.068 29.630 9.01 10.69 37.11 0.98
314 315 8.842358 ATATTGTGTTATCCGGAAATCGTAAT 57.158 30.769 9.01 8.76 37.11 1.89
315 316 9.414295 CTATATTGTGTTATCCGGAAATCGTAA 57.586 33.333 9.01 0.00 37.11 3.18
316 317 7.543172 GCTATATTGTGTTATCCGGAAATCGTA 59.457 37.037 9.01 0.00 37.11 3.43
317 318 6.367969 GCTATATTGTGTTATCCGGAAATCGT 59.632 38.462 9.01 0.00 37.11 3.73
318 319 6.367695 TGCTATATTGTGTTATCCGGAAATCG 59.632 38.462 9.01 0.00 38.88 3.34
319 320 7.667043 TGCTATATTGTGTTATCCGGAAATC 57.333 36.000 9.01 1.80 0.00 2.17
320 321 7.882791 TCATGCTATATTGTGTTATCCGGAAAT 59.117 33.333 9.01 4.98 0.00 2.17
321 322 7.220740 TCATGCTATATTGTGTTATCCGGAAA 58.779 34.615 9.01 0.99 0.00 3.13
322 323 6.764379 TCATGCTATATTGTGTTATCCGGAA 58.236 36.000 9.01 0.00 0.00 4.30
323 324 6.353404 TCATGCTATATTGTGTTATCCGGA 57.647 37.500 6.61 6.61 0.00 5.14
324 325 7.615582 ATTCATGCTATATTGTGTTATCCGG 57.384 36.000 0.00 0.00 0.00 5.14
383 384 9.981460 CCCTAGAGGCAATAATAAAAGGATTAT 57.019 33.333 0.00 0.00 34.18 1.28
401 402 4.103153 TCTGTTGGAAATATGCCCTAGAGG 59.897 45.833 0.00 0.00 39.47 3.69
402 403 5.296151 TCTGTTGGAAATATGCCCTAGAG 57.704 43.478 0.00 0.00 0.00 2.43
403 404 5.912149 ATCTGTTGGAAATATGCCCTAGA 57.088 39.130 0.00 0.00 0.00 2.43
404 405 6.323203 CAATCTGTTGGAAATATGCCCTAG 57.677 41.667 0.00 0.00 0.00 3.02
418 419 3.068590 AGTTTCACAAGGCCAATCTGTTG 59.931 43.478 5.01 1.32 35.05 3.33
419 420 3.299503 AGTTTCACAAGGCCAATCTGTT 58.700 40.909 5.01 0.00 0.00 3.16
420 421 2.887152 GAGTTTCACAAGGCCAATCTGT 59.113 45.455 5.01 0.00 0.00 3.41
431 432 2.416747 CCGATGAGCTGAGTTTCACAA 58.583 47.619 0.00 0.00 0.00 3.33
442 443 1.896220 TTTCAAACAGCCGATGAGCT 58.104 45.000 0.00 0.00 46.45 4.09
443 444 2.704725 TTTTCAAACAGCCGATGAGC 57.295 45.000 0.00 0.00 0.00 4.26
451 452 7.173735 AGGGAAATCAATCATTTTTCAAACAGC 59.826 33.333 0.00 0.00 34.60 4.40
457 458 9.927668 GAAAGTAGGGAAATCAATCATTTTTCA 57.072 29.630 0.00 0.00 34.60 2.69
558 574 4.650972 ACAACTTATTTGGAGGCACCTA 57.349 40.909 1.84 0.00 39.84 3.08
572 588 5.008613 GTGCAGAATCTGAACCAACAACTTA 59.991 40.000 15.38 0.00 34.10 2.24
575 603 3.632189 GTGCAGAATCTGAACCAACAAC 58.368 45.455 15.38 0.00 34.10 3.32
577 605 1.872952 CGTGCAGAATCTGAACCAACA 59.127 47.619 15.35 0.00 36.72 3.33
612 640 7.714377 CAGAGCCTGAACAATGAACTAAGATAT 59.286 37.037 0.00 0.00 32.44 1.63
614 642 5.879223 CAGAGCCTGAACAATGAACTAAGAT 59.121 40.000 0.00 0.00 32.44 2.40
664 1296 9.185192 GCCACATCATCATTAAATTAAACTAGC 57.815 33.333 0.00 0.00 0.00 3.42
684 1316 3.009115 ACTACAGGCGGGCCACAT 61.009 61.111 12.97 0.00 38.92 3.21
685 1317 4.015406 CACTACAGGCGGGCCACA 62.015 66.667 12.97 0.00 38.92 4.17
686 1318 3.952628 GACACTACAGGCGGGCCAC 62.953 68.421 12.97 0.00 38.92 5.01
714 1347 8.864069 AGTAGAAAATATCTGTTCACTCATCG 57.136 34.615 0.00 0.00 39.30 3.84
716 1349 9.950496 ACAAGTAGAAAATATCTGTTCACTCAT 57.050 29.630 0.00 0.00 39.30 2.90
718 1351 8.660373 CCACAAGTAGAAAATATCTGTTCACTC 58.340 37.037 0.00 0.00 39.30 3.51
720 1353 8.547967 TCCACAAGTAGAAAATATCTGTTCAC 57.452 34.615 0.00 0.00 39.30 3.18
721 1354 7.334421 GCTCCACAAGTAGAAAATATCTGTTCA 59.666 37.037 0.00 0.00 39.30 3.18
722 1355 7.550906 AGCTCCACAAGTAGAAAATATCTGTTC 59.449 37.037 0.00 0.00 39.30 3.18
723 1356 7.398024 AGCTCCACAAGTAGAAAATATCTGTT 58.602 34.615 0.00 0.00 39.30 3.16
725 1358 7.439655 GGTAGCTCCACAAGTAGAAAATATCTG 59.560 40.741 0.00 0.00 36.51 2.90
726 1359 7.345914 AGGTAGCTCCACAAGTAGAAAATATCT 59.654 37.037 0.00 0.00 39.40 1.98
727 1360 7.501844 AGGTAGCTCCACAAGTAGAAAATATC 58.498 38.462 0.00 0.00 39.02 1.63
728 1361 7.439108 AGGTAGCTCCACAAGTAGAAAATAT 57.561 36.000 0.00 0.00 39.02 1.28
729 1362 6.869206 AGGTAGCTCCACAAGTAGAAAATA 57.131 37.500 0.00 0.00 39.02 1.40
730 1363 5.763876 AGGTAGCTCCACAAGTAGAAAAT 57.236 39.130 0.00 0.00 39.02 1.82
731 1364 6.869206 ATAGGTAGCTCCACAAGTAGAAAA 57.131 37.500 0.00 0.00 39.02 2.29
732 1365 6.869206 AATAGGTAGCTCCACAAGTAGAAA 57.131 37.500 0.00 0.00 39.02 2.52
734 1367 6.869206 AAAATAGGTAGCTCCACAAGTAGA 57.131 37.500 0.00 0.00 39.02 2.59
785 1426 7.008628 GCTGTATCTGTGCAAAACATAATTGTC 59.991 37.037 0.00 0.00 38.39 3.18
793 1434 3.475575 TCTGCTGTATCTGTGCAAAACA 58.524 40.909 0.00 0.00 36.22 2.83
846 1494 2.505407 TGGGGACAGACACTCATTATGG 59.495 50.000 0.00 0.00 35.01 2.74
918 1582 1.766496 ACCGAAGTGGAGGACTCAAAA 59.234 47.619 1.32 0.00 42.00 2.44
928 1595 3.269538 TCAGAAAACAACCGAAGTGGA 57.730 42.857 0.00 0.00 42.00 4.02
980 1652 4.563976 CCATCGAACAAATTCAATTCAGCC 59.436 41.667 0.00 0.00 34.14 4.85
1045 1723 2.300152 TGAGATCACTTGTCCTGGTGAC 59.700 50.000 0.00 0.00 43.79 3.67
1223 1901 4.796606 CTTTCCATGTCCAGGTATCCAAT 58.203 43.478 0.00 0.00 0.00 3.16
1286 1964 0.250513 GAGGTCAACCAGCGAGGAAT 59.749 55.000 5.19 0.00 41.22 3.01
1317 1995 5.121105 CCAGAGTCATCAATATGTGAGCAA 58.879 41.667 0.00 0.00 40.43 3.91
1326 2004 2.507058 AGCAAGCCCAGAGTCATCAATA 59.493 45.455 0.00 0.00 0.00 1.90
1372 2050 1.402194 GGAGTTGAGCGTGAGAGACAG 60.402 57.143 0.00 0.00 0.00 3.51
1382 2060 1.002468 CTTTTGGTGTGGAGTTGAGCG 60.002 52.381 0.00 0.00 0.00 5.03
1402 2080 4.437390 CGAGAAATGCCCAACTGATGTTAC 60.437 45.833 0.00 0.00 34.60 2.50
1418 2097 0.034896 ACCGACTGCAACCGAGAAAT 59.965 50.000 8.73 0.00 0.00 2.17
1434 2113 1.394917 GCAGATAGACTTGTGCAACCG 59.605 52.381 0.00 0.00 35.91 4.44
1648 2327 7.187824 AGTCATAGACCACATCACTTGTAAT 57.812 36.000 0.00 0.00 36.00 1.89
1654 2336 3.957497 GAGGAGTCATAGACCACATCACT 59.043 47.826 0.00 0.00 32.18 3.41
1690 2372 4.986659 GCAGAAATCATACAAATCCATGCC 59.013 41.667 0.00 0.00 0.00 4.40
1798 2480 3.960102 TCAAGGCAAAGTTTCTCCAATGT 59.040 39.130 6.28 0.00 0.00 2.71
1809 2491 2.825532 ACAAACACACTCAAGGCAAAGT 59.174 40.909 0.00 0.00 0.00 2.66
1823 2505 6.360681 GTCATTGTCATTTAGAGCACAAACAC 59.639 38.462 0.00 0.00 32.66 3.32
1833 2515 7.393841 TGCAATCATGTCATTGTCATTTAGA 57.606 32.000 8.45 0.00 36.32 2.10
1871 2553 4.022849 GTGAGATGCTTTTAAGGTTGCTGT 60.023 41.667 0.00 0.00 0.00 4.40
1967 2649 5.046520 CAGTTTAGGGCTAGAGTGTAAAGGT 60.047 44.000 0.00 0.00 0.00 3.50
1986 2668 3.935203 CCATCTGAAGCATACGACAGTTT 59.065 43.478 0.00 0.00 0.00 2.66
2071 2753 3.554934 ACTGAATGAGTGCCAGAAAACA 58.445 40.909 0.00 0.00 31.75 2.83
2114 2796 7.092517 TCAAAGAAGTTGGCGGTATTTAGCG 62.093 44.000 4.90 4.90 41.69 4.26
2197 2879 1.790755 TCAGTTACCGCATGACACAC 58.209 50.000 0.00 0.00 0.00 3.82
2231 2913 3.751246 CTGGGGTGTGCGCAATGG 61.751 66.667 14.00 0.00 0.00 3.16
2461 3144 8.698973 TTATAGTGAAAATTTTGGAGACCACA 57.301 30.769 8.47 0.00 30.78 4.17
2481 3164 9.844790 TTGATGTCTTCAGCAACAAATTTATAG 57.155 29.630 0.00 0.00 43.57 1.31
2492 3175 4.639755 TGAACAACTTGATGTCTTCAGCAA 59.360 37.500 0.00 0.00 45.71 3.91
2505 3188 3.696281 TGATGCACACTGAACAACTTG 57.304 42.857 0.00 0.00 0.00 3.16
2540 3225 0.755698 ATCTAGGTCGGGTGATGCGT 60.756 55.000 0.00 0.00 0.00 5.24
2541 3226 0.389391 AATCTAGGTCGGGTGATGCG 59.611 55.000 0.00 0.00 0.00 4.73
2548 3233 2.233922 ACACAAGTGAATCTAGGTCGGG 59.766 50.000 7.28 0.00 0.00 5.14
3129 3831 1.132495 GGTAGGGGTAGATGTGGGGAT 60.132 57.143 0.00 0.00 0.00 3.85
3327 4029 2.486966 GGCGAGCCTGATTTGTGC 59.513 61.111 6.90 0.00 0.00 4.57


Based at the University of Bristol with support from BBSRC. BBSRC icon Bristol icon

AutoCloner maintained by Alex Coulton.