Multiple sequence alignment - TraesCS1A01G005100
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G005100 | chr1A | 100.000 | 4219 | 0 | 0 | 1 | 4219 | 2982121 | 2977903 | 0.000000e+00 | 7792.0 |
1 | TraesCS1A01G005100 | chr1A | 90.916 | 2543 | 147 | 35 | 1687 | 4219 | 3448358 | 3450826 | 0.000000e+00 | 3339.0 |
2 | TraesCS1A01G005100 | chr1A | 91.221 | 729 | 48 | 8 | 3494 | 4219 | 3676822 | 3677537 | 0.000000e+00 | 977.0 |
3 | TraesCS1A01G005100 | chr1A | 83.311 | 749 | 98 | 17 | 1773 | 2509 | 27218556 | 27217823 | 0.000000e+00 | 665.0 |
4 | TraesCS1A01G005100 | chr1A | 91.848 | 368 | 24 | 5 | 1882 | 2248 | 2988313 | 2987951 | 3.760000e-140 | 508.0 |
5 | TraesCS1A01G005100 | chr1A | 82.552 | 533 | 63 | 13 | 2928 | 3458 | 3676321 | 3676825 | 3.870000e-120 | 442.0 |
6 | TraesCS1A01G005100 | chr1A | 89.344 | 366 | 18 | 8 | 1676 | 2041 | 3469505 | 3469849 | 1.390000e-119 | 440.0 |
7 | TraesCS1A01G005100 | chr1A | 83.924 | 423 | 48 | 12 | 2383 | 2796 | 3675810 | 3676221 | 1.840000e-103 | 387.0 |
8 | TraesCS1A01G005100 | chr1A | 80.899 | 356 | 47 | 14 | 3537 | 3876 | 3487657 | 3488007 | 1.160000e-65 | 261.0 |
9 | TraesCS1A01G005100 | chr1A | 83.704 | 135 | 18 | 3 | 368 | 498 | 3018113 | 3017979 | 1.590000e-24 | 124.0 |
10 | TraesCS1A01G005100 | chr1A | 97.143 | 35 | 1 | 0 | 244 | 278 | 3697870 | 3697904 | 4.560000e-05 | 60.2 |
11 | TraesCS1A01G005100 | chr1B | 93.981 | 2492 | 112 | 16 | 1686 | 4150 | 4477278 | 4479758 | 0.000000e+00 | 3736.0 |
12 | TraesCS1A01G005100 | chr1B | 88.428 | 1279 | 113 | 20 | 2917 | 4167 | 4556420 | 4557691 | 0.000000e+00 | 1509.0 |
13 | TraesCS1A01G005100 | chr1B | 84.247 | 1022 | 121 | 27 | 1689 | 2689 | 3948205 | 3947203 | 0.000000e+00 | 959.0 |
14 | TraesCS1A01G005100 | chr1B | 80.372 | 1238 | 186 | 39 | 2363 | 3580 | 4126982 | 4125782 | 0.000000e+00 | 887.0 |
15 | TraesCS1A01G005100 | chr1B | 92.281 | 583 | 34 | 7 | 3572 | 4150 | 4119036 | 4118461 | 0.000000e+00 | 817.0 |
16 | TraesCS1A01G005100 | chr1B | 87.844 | 617 | 49 | 13 | 1 | 602 | 4562086 | 4562691 | 0.000000e+00 | 701.0 |
17 | TraesCS1A01G005100 | chr1B | 75.166 | 1506 | 246 | 72 | 1899 | 3334 | 4818728 | 4820175 | 3.630000e-165 | 592.0 |
18 | TraesCS1A01G005100 | chr1B | 78.434 | 830 | 105 | 38 | 1985 | 2795 | 4032004 | 4031230 | 1.370000e-129 | 473.0 |
19 | TraesCS1A01G005100 | chr1B | 73.920 | 1250 | 228 | 54 | 2154 | 3340 | 4497183 | 4498397 | 3.040000e-111 | 412.0 |
20 | TraesCS1A01G005100 | chr1B | 81.159 | 483 | 50 | 29 | 3132 | 3596 | 3947036 | 3946577 | 2.410000e-92 | 350.0 |
21 | TraesCS1A01G005100 | chr1B | 84.314 | 357 | 44 | 9 | 2363 | 2713 | 4555794 | 4556144 | 5.230000e-89 | 339.0 |
22 | TraesCS1A01G005100 | chr1B | 80.538 | 483 | 56 | 25 | 2069 | 2521 | 4189389 | 4188915 | 1.880000e-88 | 337.0 |
23 | TraesCS1A01G005100 | chr1B | 85.782 | 211 | 17 | 8 | 3027 | 3230 | 687790161 | 687789957 | 1.190000e-50 | 211.0 |
24 | TraesCS1A01G005100 | chr1B | 76.275 | 451 | 64 | 18 | 2576 | 2998 | 4527348 | 4527783 | 2.570000e-47 | 200.0 |
25 | TraesCS1A01G005100 | chr1B | 94.531 | 128 | 3 | 1 | 929 | 1056 | 4148903 | 4148780 | 1.200000e-45 | 195.0 |
26 | TraesCS1A01G005100 | chr1B | 87.006 | 177 | 12 | 9 | 252 | 422 | 3941497 | 3941326 | 5.570000e-44 | 189.0 |
27 | TraesCS1A01G005100 | chr1B | 92.969 | 128 | 5 | 1 | 929 | 1056 | 4911108 | 4911231 | 2.590000e-42 | 183.0 |
28 | TraesCS1A01G005100 | chr1B | 86.400 | 125 | 10 | 2 | 2675 | 2799 | 4188867 | 4188750 | 3.420000e-26 | 130.0 |
29 | TraesCS1A01G005100 | chr1B | 87.500 | 112 | 13 | 1 | 814 | 925 | 4950204 | 4950314 | 1.230000e-25 | 128.0 |
30 | TraesCS1A01G005100 | chr1B | 86.667 | 90 | 10 | 1 | 3945 | 4034 | 4587627 | 4587714 | 9.650000e-17 | 99.0 |
31 | TraesCS1A01G005100 | chr1B | 88.889 | 63 | 5 | 1 | 3972 | 4034 | 4498758 | 4498818 | 4.520000e-10 | 76.8 |
32 | TraesCS1A01G005100 | chr1D | 89.652 | 2561 | 170 | 29 | 1686 | 4191 | 614683 | 617203 | 0.000000e+00 | 3173.0 |
33 | TraesCS1A01G005100 | chr1D | 94.152 | 855 | 32 | 4 | 713 | 1565 | 456561 | 455723 | 0.000000e+00 | 1286.0 |
34 | TraesCS1A01G005100 | chr1D | 86.038 | 838 | 86 | 20 | 3130 | 3946 | 452206 | 451379 | 0.000000e+00 | 870.0 |
35 | TraesCS1A01G005100 | chr1D | 85.812 | 585 | 52 | 13 | 1 | 568 | 458119 | 457549 | 3.630000e-165 | 592.0 |
36 | TraesCS1A01G005100 | chr1D | 88.281 | 512 | 36 | 14 | 1738 | 2248 | 464450 | 463962 | 3.630000e-165 | 592.0 |
37 | TraesCS1A01G005100 | chr1D | 84.094 | 635 | 73 | 17 | 1685 | 2297 | 398318 | 397690 | 4.700000e-164 | 588.0 |
38 | TraesCS1A01G005100 | chr1D | 84.551 | 356 | 43 | 4 | 1686 | 2029 | 692893 | 693248 | 4.040000e-90 | 342.0 |
39 | TraesCS1A01G005100 | chr1D | 84.054 | 370 | 43 | 6 | 2406 | 2767 | 693797 | 694158 | 4.040000e-90 | 342.0 |
40 | TraesCS1A01G005100 | chr1D | 91.099 | 191 | 17 | 0 | 2134 | 2324 | 693579 | 693769 | 4.180000e-65 | 259.0 |
41 | TraesCS1A01G005100 | chr1D | 96.491 | 57 | 2 | 0 | 1676 | 1732 | 464563 | 464507 | 1.250000e-15 | 95.3 |
42 | TraesCS1A01G005100 | chr1D | 77.143 | 105 | 17 | 5 | 3974 | 4078 | 396693 | 396596 | 2.000000e-03 | 54.7 |
43 | TraesCS1A01G005100 | chr5D | 90.102 | 293 | 15 | 3 | 1333 | 1620 | 497870554 | 497870271 | 6.660000e-98 | 368.0 |
44 | TraesCS1A01G005100 | chr3D | 82.171 | 387 | 51 | 9 | 2913 | 3287 | 560071856 | 560072236 | 2.450000e-82 | 316.0 |
45 | TraesCS1A01G005100 | chr3D | 77.252 | 444 | 59 | 24 | 3379 | 3786 | 560072278 | 560072715 | 5.490000e-54 | 222.0 |
46 | TraesCS1A01G005100 | chr5B | 87.556 | 225 | 15 | 3 | 1335 | 1557 | 617173748 | 617173535 | 9.060000e-62 | 248.0 |
47 | TraesCS1A01G005100 | chrUn | 90.604 | 149 | 10 | 1 | 940 | 1088 | 318172896 | 318172752 | 1.200000e-45 | 195.0 |
48 | TraesCS1A01G005100 | chrUn | 83.704 | 135 | 18 | 3 | 368 | 498 | 318173886 | 318173752 | 1.590000e-24 | 124.0 |
49 | TraesCS1A01G005100 | chr7D | 100.000 | 28 | 0 | 0 | 1568 | 1595 | 311872943 | 311872916 | 8.000000e-03 | 52.8 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G005100 | chr1A | 2977903 | 2982121 | 4218 | True | 7792.000000 | 7792 | 100.000000 | 1 | 4219 | 1 | chr1A.!!$R1 | 4218 |
1 | TraesCS1A01G005100 | chr1A | 3448358 | 3450826 | 2468 | False | 3339.000000 | 3339 | 90.916000 | 1687 | 4219 | 1 | chr1A.!!$F1 | 2532 |
2 | TraesCS1A01G005100 | chr1A | 27217823 | 27218556 | 733 | True | 665.000000 | 665 | 83.311000 | 1773 | 2509 | 1 | chr1A.!!$R4 | 736 |
3 | TraesCS1A01G005100 | chr1A | 3675810 | 3677537 | 1727 | False | 602.000000 | 977 | 85.899000 | 2383 | 4219 | 3 | chr1A.!!$F5 | 1836 |
4 | TraesCS1A01G005100 | chr1B | 4477278 | 4479758 | 2480 | False | 3736.000000 | 3736 | 93.981000 | 1686 | 4150 | 1 | chr1B.!!$F1 | 2464 |
5 | TraesCS1A01G005100 | chr1B | 4555794 | 4557691 | 1897 | False | 924.000000 | 1509 | 86.371000 | 2363 | 4167 | 2 | chr1B.!!$F9 | 1804 |
6 | TraesCS1A01G005100 | chr1B | 4125782 | 4126982 | 1200 | True | 887.000000 | 887 | 80.372000 | 2363 | 3580 | 1 | chr1B.!!$R4 | 1217 |
7 | TraesCS1A01G005100 | chr1B | 4118461 | 4119036 | 575 | True | 817.000000 | 817 | 92.281000 | 3572 | 4150 | 1 | chr1B.!!$R3 | 578 |
8 | TraesCS1A01G005100 | chr1B | 4562086 | 4562691 | 605 | False | 701.000000 | 701 | 87.844000 | 1 | 602 | 1 | chr1B.!!$F3 | 601 |
9 | TraesCS1A01G005100 | chr1B | 3946577 | 3948205 | 1628 | True | 654.500000 | 959 | 82.703000 | 1689 | 3596 | 2 | chr1B.!!$R7 | 1907 |
10 | TraesCS1A01G005100 | chr1B | 4818728 | 4820175 | 1447 | False | 592.000000 | 592 | 75.166000 | 1899 | 3334 | 1 | chr1B.!!$F5 | 1435 |
11 | TraesCS1A01G005100 | chr1B | 4031230 | 4032004 | 774 | True | 473.000000 | 473 | 78.434000 | 1985 | 2795 | 1 | chr1B.!!$R2 | 810 |
12 | TraesCS1A01G005100 | chr1B | 4497183 | 4498818 | 1635 | False | 244.400000 | 412 | 81.404500 | 2154 | 4034 | 2 | chr1B.!!$F8 | 1880 |
13 | TraesCS1A01G005100 | chr1B | 4188750 | 4189389 | 639 | True | 233.500000 | 337 | 83.469000 | 2069 | 2799 | 2 | chr1B.!!$R8 | 730 |
14 | TraesCS1A01G005100 | chr1D | 614683 | 617203 | 2520 | False | 3173.000000 | 3173 | 89.652000 | 1686 | 4191 | 1 | chr1D.!!$F1 | 2505 |
15 | TraesCS1A01G005100 | chr1D | 451379 | 458119 | 6740 | True | 916.000000 | 1286 | 88.667333 | 1 | 3946 | 3 | chr1D.!!$R2 | 3945 |
16 | TraesCS1A01G005100 | chr1D | 463962 | 464563 | 601 | True | 343.650000 | 592 | 92.386000 | 1676 | 2248 | 2 | chr1D.!!$R3 | 572 |
17 | TraesCS1A01G005100 | chr1D | 396596 | 398318 | 1722 | True | 321.350000 | 588 | 80.618500 | 1685 | 4078 | 2 | chr1D.!!$R1 | 2393 |
18 | TraesCS1A01G005100 | chr1D | 692893 | 694158 | 1265 | False | 314.333333 | 342 | 86.568000 | 1686 | 2767 | 3 | chr1D.!!$F2 | 1081 |
19 | TraesCS1A01G005100 | chr3D | 560071856 | 560072715 | 859 | False | 269.000000 | 316 | 79.711500 | 2913 | 3786 | 2 | chr3D.!!$F1 | 873 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
583 | 608 | 0.033504 | ACACCGTCTGCGTTGAATCT | 59.966 | 50.0 | 0.00 | 0.0 | 34.07 | 2.40 | F |
706 | 731 | 0.042731 | TTAGGTGCCTGCCTACCTCT | 59.957 | 55.0 | 4.58 | 0.0 | 43.69 | 3.69 | F |
1601 | 2515 | 0.316841 | TCCGTTCCAAAATGCTTGCC | 59.683 | 50.0 | 0.00 | 0.0 | 0.00 | 4.52 | F |
1605 | 2519 | 1.035923 | TTCCAAAATGCTTGCCGTGA | 58.964 | 45.0 | 0.00 | 0.0 | 0.00 | 4.35 | F |
2268 | 5934 | 1.429463 | GGCGGTATGGCTCTTATTCG | 58.571 | 55.0 | 0.00 | 0.0 | 40.72 | 3.34 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1584 | 2498 | 0.318614 | ACGGCAAGCATTTTGGAACG | 60.319 | 50.000 | 0.00 | 0.0 | 0.00 | 3.95 | R |
1754 | 5054 | 2.375174 | TGTAGGGAAAGCATGTGGAGTT | 59.625 | 45.455 | 0.00 | 0.0 | 0.00 | 3.01 | R |
2487 | 6202 | 2.614057 | CAGCAAACAGAGAACCGTCTTT | 59.386 | 45.455 | 0.00 | 0.0 | 32.80 | 2.52 | R |
3053 | 6949 | 4.406648 | TGTGCCGTCTGAGATATTCAAT | 57.593 | 40.909 | 0.00 | 0.0 | 34.81 | 2.57 | R |
3824 | 7945 | 0.178953 | ACCTTGTGCCAAGCAGGAAT | 60.179 | 50.000 | 8.85 | 0.0 | 40.08 | 3.01 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
26 | 27 | 8.514330 | TTTTCAGTTGGTACATAGAACAAACT | 57.486 | 30.769 | 0.00 | 0.00 | 40.92 | 2.66 |
37 | 44 | 7.190920 | ACATAGAACAAACTGTTTAGCTCAC | 57.809 | 36.000 | 5.31 | 0.00 | 41.28 | 3.51 |
41 | 48 | 3.537580 | ACAAACTGTTTAGCTCACGGAA | 58.462 | 40.909 | 5.31 | 0.00 | 0.00 | 4.30 |
55 | 62 | 2.668632 | GGAATCGTGGCTGGTGGA | 59.331 | 61.111 | 0.00 | 0.00 | 0.00 | 4.02 |
66 | 73 | 1.648720 | CTGGTGGAGCAACACAACG | 59.351 | 57.895 | 12.04 | 0.00 | 43.08 | 4.10 |
74 | 81 | 2.788786 | GGAGCAACACAACGACAAATTG | 59.211 | 45.455 | 0.00 | 0.00 | 0.00 | 2.32 |
86 | 93 | 5.529581 | ACGACAAATTGTGGGAAAATTCT | 57.470 | 34.783 | 12.51 | 0.00 | 29.89 | 2.40 |
105 | 112 | 5.957842 | TTCTGTGCTGGTGGTAAAAATAG | 57.042 | 39.130 | 0.00 | 0.00 | 0.00 | 1.73 |
112 | 119 | 5.242838 | TGCTGGTGGTAAAAATAGAGGTTTG | 59.757 | 40.000 | 0.00 | 0.00 | 0.00 | 2.93 |
113 | 120 | 5.336451 | GCTGGTGGTAAAAATAGAGGTTTGG | 60.336 | 44.000 | 0.00 | 0.00 | 0.00 | 3.28 |
117 | 124 | 5.537295 | GTGGTAAAAATAGAGGTTTGGGTGT | 59.463 | 40.000 | 0.00 | 0.00 | 0.00 | 4.16 |
131 | 138 | 4.927978 | TTGGGTGTTGAATTGTGGTTAG | 57.072 | 40.909 | 0.00 | 0.00 | 0.00 | 2.34 |
187 | 206 | 2.613977 | CGAGGAAAATGACAGAGTGGCT | 60.614 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
210 | 231 | 6.929049 | GCTCTGTACAACCATGCAAGTATATA | 59.071 | 38.462 | 0.00 | 0.00 | 0.00 | 0.86 |
211 | 232 | 7.604164 | GCTCTGTACAACCATGCAAGTATATAT | 59.396 | 37.037 | 0.00 | 0.00 | 0.00 | 0.86 |
216 | 237 | 9.878599 | GTACAACCATGCAAGTATATATTGTTC | 57.121 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
259 | 280 | 2.105477 | CCTATACAACCAGGCAGCATCT | 59.895 | 50.000 | 0.00 | 0.00 | 0.00 | 2.90 |
285 | 307 | 4.099266 | ACCACACAAGCTGAAGCAAAAATA | 59.901 | 37.500 | 4.90 | 0.00 | 45.16 | 1.40 |
295 | 317 | 5.463061 | GCTGAAGCAAAAATACAAGCTCAAA | 59.537 | 36.000 | 0.00 | 0.00 | 41.59 | 2.69 |
377 | 402 | 1.774254 | TCCGACATGCCAATATTCCCT | 59.226 | 47.619 | 0.00 | 0.00 | 0.00 | 4.20 |
391 | 416 | 1.089123 | TTCCCTGGTATGCCCCTTTT | 58.911 | 50.000 | 0.00 | 0.00 | 0.00 | 2.27 |
428 | 453 | 2.086610 | AAAGGGTGCAAATCCACTGT | 57.913 | 45.000 | 0.00 | 0.00 | 36.03 | 3.55 |
446 | 471 | 3.517901 | ACTGTTCAACCTCCGATATTCCA | 59.482 | 43.478 | 0.00 | 0.00 | 0.00 | 3.53 |
464 | 489 | 2.159043 | TCCATCGAACATCTGAGAAGGC | 60.159 | 50.000 | 0.00 | 0.00 | 0.00 | 4.35 |
465 | 490 | 2.419159 | CCATCGAACATCTGAGAAGGCA | 60.419 | 50.000 | 0.00 | 0.00 | 0.00 | 4.75 |
466 | 491 | 3.464907 | CATCGAACATCTGAGAAGGCAT | 58.535 | 45.455 | 0.00 | 0.00 | 0.00 | 4.40 |
468 | 493 | 3.264947 | TCGAACATCTGAGAAGGCATTG | 58.735 | 45.455 | 0.00 | 0.00 | 0.00 | 2.82 |
471 | 496 | 3.278668 | ACATCTGAGAAGGCATTGAGG | 57.721 | 47.619 | 0.00 | 0.00 | 0.00 | 3.86 |
476 | 501 | 1.340405 | TGAGAAGGCATTGAGGAAGGC | 60.340 | 52.381 | 0.00 | 0.00 | 38.17 | 4.35 |
508 | 533 | 5.783111 | ACTTGTTTTGGAATAATGTGAGCC | 58.217 | 37.500 | 0.00 | 0.00 | 0.00 | 4.70 |
509 | 534 | 5.304101 | ACTTGTTTTGGAATAATGTGAGCCA | 59.696 | 36.000 | 0.00 | 0.00 | 0.00 | 4.75 |
510 | 535 | 5.132897 | TGTTTTGGAATAATGTGAGCCAC | 57.867 | 39.130 | 0.00 | 0.00 | 34.56 | 5.01 |
511 | 536 | 4.832266 | TGTTTTGGAATAATGTGAGCCACT | 59.168 | 37.500 | 6.83 | 0.00 | 35.11 | 4.00 |
512 | 537 | 5.048083 | TGTTTTGGAATAATGTGAGCCACTC | 60.048 | 40.000 | 6.83 | 0.00 | 35.11 | 3.51 |
513 | 538 | 4.574674 | TTGGAATAATGTGAGCCACTCT | 57.425 | 40.909 | 6.83 | 0.00 | 35.11 | 3.24 |
514 | 539 | 4.142609 | TGGAATAATGTGAGCCACTCTC | 57.857 | 45.455 | 6.83 | 0.00 | 42.23 | 3.20 |
515 | 540 | 3.776969 | TGGAATAATGTGAGCCACTCTCT | 59.223 | 43.478 | 6.83 | 0.00 | 42.38 | 3.10 |
525 | 550 | 3.287222 | GAGCCACTCTCTGTCTCTGTAT | 58.713 | 50.000 | 0.00 | 0.00 | 38.78 | 2.29 |
529 | 554 | 3.130164 | CCACTCTCTGTCTCTGTATGGTG | 59.870 | 52.174 | 0.00 | 0.00 | 0.00 | 4.17 |
535 | 560 | 4.412843 | TCTGTCTCTGTATGGTGGTTGTA | 58.587 | 43.478 | 0.00 | 0.00 | 0.00 | 2.41 |
542 | 567 | 5.274015 | TCTGTATGGTGGTTGTACATCCTA | 58.726 | 41.667 | 20.93 | 10.02 | 0.00 | 2.94 |
569 | 594 | 7.601073 | ATTATATAGCATGTCAATCACACCG | 57.399 | 36.000 | 0.00 | 0.00 | 38.04 | 4.94 |
571 | 596 | 1.442769 | AGCATGTCAATCACACCGTC | 58.557 | 50.000 | 0.00 | 0.00 | 38.04 | 4.79 |
572 | 597 | 1.002430 | AGCATGTCAATCACACCGTCT | 59.998 | 47.619 | 0.00 | 0.00 | 38.04 | 4.18 |
573 | 598 | 1.129251 | GCATGTCAATCACACCGTCTG | 59.871 | 52.381 | 0.00 | 0.00 | 38.04 | 3.51 |
574 | 599 | 1.129251 | CATGTCAATCACACCGTCTGC | 59.871 | 52.381 | 0.00 | 0.00 | 38.04 | 4.26 |
575 | 600 | 0.943835 | TGTCAATCACACCGTCTGCG | 60.944 | 55.000 | 0.00 | 0.00 | 37.95 | 5.18 |
576 | 601 | 0.944311 | GTCAATCACACCGTCTGCGT | 60.944 | 55.000 | 0.00 | 0.00 | 36.15 | 5.24 |
577 | 602 | 0.249699 | TCAATCACACCGTCTGCGTT | 60.250 | 50.000 | 0.00 | 0.00 | 36.15 | 4.84 |
578 | 603 | 0.110688 | CAATCACACCGTCTGCGTTG | 60.111 | 55.000 | 0.00 | 0.00 | 36.56 | 4.10 |
579 | 604 | 0.249699 | AATCACACCGTCTGCGTTGA | 60.250 | 50.000 | 0.00 | 0.00 | 34.07 | 3.18 |
581 | 606 | 0.249699 | TCACACCGTCTGCGTTGAAT | 60.250 | 50.000 | 0.00 | 0.00 | 34.07 | 2.57 |
583 | 608 | 0.033504 | ACACCGTCTGCGTTGAATCT | 59.966 | 50.000 | 0.00 | 0.00 | 34.07 | 2.40 |
585 | 610 | 0.732880 | ACCGTCTGCGTTGAATCTCG | 60.733 | 55.000 | 0.00 | 0.00 | 36.15 | 4.04 |
586 | 611 | 0.456142 | CCGTCTGCGTTGAATCTCGA | 60.456 | 55.000 | 3.18 | 0.00 | 36.15 | 4.04 |
587 | 612 | 1.550065 | CGTCTGCGTTGAATCTCGAT | 58.450 | 50.000 | 0.00 | 0.00 | 0.00 | 3.59 |
590 | 615 | 1.476488 | TCTGCGTTGAATCTCGATGGA | 59.524 | 47.619 | 0.00 | 0.00 | 0.00 | 3.41 |
592 | 617 | 2.868583 | CTGCGTTGAATCTCGATGGAAT | 59.131 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
593 | 618 | 2.609002 | TGCGTTGAATCTCGATGGAATG | 59.391 | 45.455 | 0.00 | 0.00 | 0.00 | 2.67 |
596 | 621 | 4.437390 | GCGTTGAATCTCGATGGAATGTTT | 60.437 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
597 | 622 | 5.220586 | GCGTTGAATCTCGATGGAATGTTTA | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.01 |
598 | 623 | 6.414079 | CGTTGAATCTCGATGGAATGTTTAG | 58.586 | 40.000 | 0.00 | 0.00 | 0.00 | 1.85 |
599 | 624 | 6.510157 | CGTTGAATCTCGATGGAATGTTTAGG | 60.510 | 42.308 | 0.00 | 0.00 | 0.00 | 2.69 |
600 | 625 | 5.989477 | TGAATCTCGATGGAATGTTTAGGT | 58.011 | 37.500 | 0.00 | 0.00 | 0.00 | 3.08 |
602 | 627 | 6.316140 | TGAATCTCGATGGAATGTTTAGGTTG | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 3.77 |
603 | 628 | 4.513442 | TCTCGATGGAATGTTTAGGTTGG | 58.487 | 43.478 | 0.00 | 0.00 | 0.00 | 3.77 |
604 | 629 | 4.224147 | TCTCGATGGAATGTTTAGGTTGGA | 59.776 | 41.667 | 0.00 | 0.00 | 0.00 | 3.53 |
605 | 630 | 4.912586 | TCGATGGAATGTTTAGGTTGGAA | 58.087 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
607 | 632 | 5.414454 | TCGATGGAATGTTTAGGTTGGAAAG | 59.586 | 40.000 | 0.00 | 0.00 | 0.00 | 2.62 |
608 | 633 | 4.864704 | TGGAATGTTTAGGTTGGAAAGC | 57.135 | 40.909 | 0.00 | 0.00 | 46.62 | 3.51 |
617 | 642 | 1.856802 | GGTTGGAAAGCAAGCACAAG | 58.143 | 50.000 | 0.00 | 0.00 | 45.31 | 3.16 |
620 | 645 | 3.054878 | GTTGGAAAGCAAGCACAAGATG | 58.945 | 45.455 | 0.00 | 0.00 | 0.00 | 2.90 |
622 | 647 | 2.957680 | TGGAAAGCAAGCACAAGATGAA | 59.042 | 40.909 | 0.00 | 0.00 | 0.00 | 2.57 |
624 | 649 | 4.171754 | GGAAAGCAAGCACAAGATGAATC | 58.828 | 43.478 | 0.00 | 0.00 | 0.00 | 2.52 |
625 | 650 | 4.082354 | GGAAAGCAAGCACAAGATGAATCT | 60.082 | 41.667 | 0.00 | 0.00 | 39.22 | 2.40 |
626 | 651 | 4.436242 | AAGCAAGCACAAGATGAATCTG | 57.564 | 40.909 | 0.00 | 0.00 | 37.19 | 2.90 |
627 | 652 | 3.418995 | AGCAAGCACAAGATGAATCTGT | 58.581 | 40.909 | 0.00 | 0.00 | 37.19 | 3.41 |
628 | 653 | 4.582869 | AGCAAGCACAAGATGAATCTGTA | 58.417 | 39.130 | 0.00 | 0.00 | 37.19 | 2.74 |
630 | 655 | 5.651139 | AGCAAGCACAAGATGAATCTGTATT | 59.349 | 36.000 | 0.00 | 0.00 | 37.19 | 1.89 |
631 | 656 | 6.825213 | AGCAAGCACAAGATGAATCTGTATTA | 59.175 | 34.615 | 0.00 | 0.00 | 37.19 | 0.98 |
632 | 657 | 7.012138 | AGCAAGCACAAGATGAATCTGTATTAG | 59.988 | 37.037 | 0.00 | 0.00 | 37.19 | 1.73 |
633 | 658 | 7.011763 | GCAAGCACAAGATGAATCTGTATTAGA | 59.988 | 37.037 | 0.00 | 0.00 | 40.37 | 2.10 |
634 | 659 | 8.886719 | CAAGCACAAGATGAATCTGTATTAGAA | 58.113 | 33.333 | 0.00 | 0.00 | 39.30 | 2.10 |
635 | 660 | 9.453572 | AAGCACAAGATGAATCTGTATTAGAAA | 57.546 | 29.630 | 0.00 | 0.00 | 39.30 | 2.52 |
636 | 661 | 9.107177 | AGCACAAGATGAATCTGTATTAGAAAG | 57.893 | 33.333 | 0.00 | 0.00 | 39.30 | 2.62 |
649 | 674 | 8.129840 | TCTGTATTAGAAAGTGATAACGAGAGC | 58.870 | 37.037 | 0.00 | 0.00 | 30.84 | 4.09 |
650 | 675 | 7.997482 | TGTATTAGAAAGTGATAACGAGAGCT | 58.003 | 34.615 | 0.00 | 0.00 | 0.00 | 4.09 |
651 | 676 | 7.915923 | TGTATTAGAAAGTGATAACGAGAGCTG | 59.084 | 37.037 | 0.00 | 0.00 | 0.00 | 4.24 |
653 | 678 | 5.140747 | AGAAAGTGATAACGAGAGCTGTT | 57.859 | 39.130 | 0.00 | 0.00 | 0.00 | 3.16 |
654 | 679 | 5.164954 | AGAAAGTGATAACGAGAGCTGTTC | 58.835 | 41.667 | 0.00 | 0.00 | 0.00 | 3.18 |
655 | 680 | 4.792521 | AAGTGATAACGAGAGCTGTTCT | 57.207 | 40.909 | 0.00 | 0.00 | 39.43 | 3.01 |
666 | 691 | 3.377346 | GAGCTGTTCTCTGAACTCACA | 57.623 | 47.619 | 11.06 | 0.00 | 38.78 | 3.58 |
667 | 692 | 3.056304 | GAGCTGTTCTCTGAACTCACAC | 58.944 | 50.000 | 11.06 | 0.00 | 38.78 | 3.82 |
671 | 696 | 4.302455 | CTGTTCTCTGAACTCACACGATT | 58.698 | 43.478 | 11.06 | 0.00 | 0.00 | 3.34 |
672 | 697 | 4.051237 | TGTTCTCTGAACTCACACGATTG | 58.949 | 43.478 | 11.06 | 0.00 | 0.00 | 2.67 |
673 | 698 | 4.051922 | GTTCTCTGAACTCACACGATTGT | 58.948 | 43.478 | 3.49 | 0.00 | 35.84 | 2.71 |
674 | 699 | 4.322080 | TCTCTGAACTCACACGATTGTT | 57.678 | 40.909 | 0.00 | 0.00 | 31.66 | 2.83 |
678 | 703 | 4.053469 | TGAACTCACACGATTGTTCAGA | 57.947 | 40.909 | 0.00 | 0.00 | 42.25 | 3.27 |
680 | 705 | 3.735237 | ACTCACACGATTGTTCAGAGT | 57.265 | 42.857 | 6.17 | 6.17 | 33.67 | 3.24 |
682 | 707 | 5.392767 | ACTCACACGATTGTTCAGAGTAT | 57.607 | 39.130 | 9.15 | 0.00 | 35.68 | 2.12 |
683 | 708 | 5.784177 | ACTCACACGATTGTTCAGAGTATT | 58.216 | 37.500 | 9.15 | 0.00 | 35.68 | 1.89 |
684 | 709 | 6.920817 | ACTCACACGATTGTTCAGAGTATTA | 58.079 | 36.000 | 9.15 | 0.00 | 35.68 | 0.98 |
685 | 710 | 7.548097 | ACTCACACGATTGTTCAGAGTATTAT | 58.452 | 34.615 | 9.15 | 0.00 | 35.68 | 1.28 |
686 | 711 | 7.489435 | ACTCACACGATTGTTCAGAGTATTATG | 59.511 | 37.037 | 9.15 | 0.00 | 35.68 | 1.90 |
687 | 712 | 7.320399 | TCACACGATTGTTCAGAGTATTATGT | 58.680 | 34.615 | 0.00 | 0.00 | 31.66 | 2.29 |
688 | 713 | 7.817478 | TCACACGATTGTTCAGAGTATTATGTT | 59.183 | 33.333 | 0.00 | 0.00 | 31.66 | 2.71 |
689 | 714 | 9.083080 | CACACGATTGTTCAGAGTATTATGTTA | 57.917 | 33.333 | 0.00 | 0.00 | 31.66 | 2.41 |
690 | 715 | 9.302345 | ACACGATTGTTCAGAGTATTATGTTAG | 57.698 | 33.333 | 0.00 | 0.00 | 28.43 | 2.34 |
691 | 716 | 8.755941 | CACGATTGTTCAGAGTATTATGTTAGG | 58.244 | 37.037 | 0.00 | 0.00 | 0.00 | 2.69 |
692 | 717 | 8.475639 | ACGATTGTTCAGAGTATTATGTTAGGT | 58.524 | 33.333 | 0.00 | 0.00 | 0.00 | 3.08 |
693 | 718 | 8.755941 | CGATTGTTCAGAGTATTATGTTAGGTG | 58.244 | 37.037 | 0.00 | 0.00 | 0.00 | 4.00 |
694 | 719 | 7.843490 | TTGTTCAGAGTATTATGTTAGGTGC | 57.157 | 36.000 | 0.00 | 0.00 | 0.00 | 5.01 |
695 | 720 | 6.346096 | TGTTCAGAGTATTATGTTAGGTGCC | 58.654 | 40.000 | 0.00 | 0.00 | 0.00 | 5.01 |
696 | 721 | 6.156256 | TGTTCAGAGTATTATGTTAGGTGCCT | 59.844 | 38.462 | 0.00 | 0.00 | 0.00 | 4.75 |
697 | 722 | 6.161855 | TCAGAGTATTATGTTAGGTGCCTG | 57.838 | 41.667 | 0.12 | 0.00 | 0.00 | 4.85 |
698 | 723 | 4.752101 | CAGAGTATTATGTTAGGTGCCTGC | 59.248 | 45.833 | 0.12 | 0.00 | 0.00 | 4.85 |
699 | 724 | 4.065789 | GAGTATTATGTTAGGTGCCTGCC | 58.934 | 47.826 | 0.12 | 0.00 | 0.00 | 4.85 |
700 | 725 | 3.716872 | AGTATTATGTTAGGTGCCTGCCT | 59.283 | 43.478 | 0.12 | 0.00 | 42.43 | 4.75 |
701 | 726 | 4.905456 | AGTATTATGTTAGGTGCCTGCCTA | 59.095 | 41.667 | 0.12 | 0.00 | 39.94 | 3.93 |
702 | 727 | 3.553828 | TTATGTTAGGTGCCTGCCTAC | 57.446 | 47.619 | 0.12 | 0.00 | 40.53 | 3.18 |
703 | 728 | 0.546598 | ATGTTAGGTGCCTGCCTACC | 59.453 | 55.000 | 0.12 | 0.00 | 40.53 | 3.18 |
705 | 730 | 0.178301 | GTTAGGTGCCTGCCTACCTC | 59.822 | 60.000 | 4.58 | 0.00 | 43.69 | 3.85 |
706 | 731 | 0.042731 | TTAGGTGCCTGCCTACCTCT | 59.957 | 55.000 | 4.58 | 0.00 | 43.69 | 3.69 |
707 | 732 | 0.397254 | TAGGTGCCTGCCTACCTCTC | 60.397 | 60.000 | 4.58 | 0.00 | 43.69 | 3.20 |
708 | 733 | 1.687493 | GGTGCCTGCCTACCTCTCT | 60.687 | 63.158 | 0.00 | 0.00 | 34.11 | 3.10 |
709 | 734 | 1.681486 | GGTGCCTGCCTACCTCTCTC | 61.681 | 65.000 | 0.00 | 0.00 | 34.11 | 3.20 |
711 | 736 | 0.396417 | TGCCTGCCTACCTCTCTCTC | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 3.20 |
717 | 1585 | 2.038659 | GCCTACCTCTCTCTCTGCAAT | 58.961 | 52.381 | 0.00 | 0.00 | 0.00 | 3.56 |
835 | 1703 | 8.467402 | ACATATTTCTGAACTCTTAAGTCGTG | 57.533 | 34.615 | 1.63 | 0.00 | 33.48 | 4.35 |
869 | 1737 | 7.121315 | GGCTTAGTGTCATGAAAGATACCTTTT | 59.879 | 37.037 | 8.71 | 0.00 | 42.30 | 2.27 |
922 | 1790 | 9.871238 | CCTAGCTTGATCTTACTAGTAAAACAA | 57.129 | 33.333 | 15.95 | 17.67 | 32.03 | 2.83 |
925 | 1793 | 9.780186 | AGCTTGATCTTACTAGTAAAACAAACT | 57.220 | 29.630 | 15.95 | 16.59 | 0.00 | 2.66 |
972 | 1840 | 9.613428 | AATTCTATTGATGGTTTCTATGTTCGA | 57.387 | 29.630 | 0.00 | 0.00 | 0.00 | 3.71 |
991 | 1859 | 8.251750 | TGTTCGATTGAGGTTAAGACAAATAG | 57.748 | 34.615 | 0.00 | 0.00 | 0.00 | 1.73 |
998 | 1866 | 4.828829 | AGGTTAAGACAAATAGTGGACCG | 58.171 | 43.478 | 0.00 | 0.00 | 0.00 | 4.79 |
999 | 1867 | 3.373130 | GGTTAAGACAAATAGTGGACCGC | 59.627 | 47.826 | 0.00 | 0.00 | 0.00 | 5.68 |
1000 | 1868 | 2.851263 | AAGACAAATAGTGGACCGCA | 57.149 | 45.000 | 7.99 | 0.00 | 0.00 | 5.69 |
1001 | 1869 | 3.350219 | AAGACAAATAGTGGACCGCAT | 57.650 | 42.857 | 7.99 | 0.00 | 0.00 | 4.73 |
1113 | 1981 | 5.640189 | AAAAGTCTACTACTAGCGCTTCA | 57.360 | 39.130 | 18.68 | 0.00 | 37.50 | 3.02 |
1138 | 2006 | 0.391130 | GTCTGCTGGATTGCCGTGTA | 60.391 | 55.000 | 0.00 | 0.00 | 36.79 | 2.90 |
1178 | 2046 | 3.985877 | CCACGATGGCTCTTTGCA | 58.014 | 55.556 | 0.00 | 0.00 | 45.15 | 4.08 |
1228 | 2096 | 4.278975 | AGACATTTTCCTTCTTCTCGCT | 57.721 | 40.909 | 0.00 | 0.00 | 0.00 | 4.93 |
1231 | 2099 | 3.433615 | ACATTTTCCTTCTTCTCGCTTCG | 59.566 | 43.478 | 0.00 | 0.00 | 0.00 | 3.79 |
1276 | 2144 | 4.204799 | CTCAGCCATCATTTCATTCCAGA | 58.795 | 43.478 | 0.00 | 0.00 | 0.00 | 3.86 |
1314 | 2182 | 6.485313 | TGTTGGTTTTCGAATGATAGTGAGTT | 59.515 | 34.615 | 0.00 | 0.00 | 0.00 | 3.01 |
1322 | 2190 | 8.703604 | TTCGAATGATAGTGAGTTCTAAAAGG | 57.296 | 34.615 | 0.00 | 0.00 | 0.00 | 3.11 |
1339 | 2207 | 4.338379 | AAAGGAGGTGTTCTCTGTACAC | 57.662 | 45.455 | 0.00 | 0.00 | 43.96 | 2.90 |
1355 | 2223 | 6.134055 | TCTGTACACCCTATAGTTAGCATGT | 58.866 | 40.000 | 0.00 | 0.00 | 0.00 | 3.21 |
1366 | 2234 | 3.148412 | AGTTAGCATGTGTGTGATTGCA | 58.852 | 40.909 | 0.00 | 0.00 | 37.56 | 4.08 |
1454 | 2324 | 6.710597 | ATTTGCTAGTTCTCGTACCATCTA | 57.289 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
1464 | 2334 | 4.350225 | TCTCGTACCATCTATACTCACCCT | 59.650 | 45.833 | 0.00 | 0.00 | 0.00 | 4.34 |
1471 | 2341 | 5.364157 | ACCATCTATACTCACCCTTTCTGTC | 59.636 | 44.000 | 0.00 | 0.00 | 0.00 | 3.51 |
1509 | 2379 | 5.128919 | AGGCATGTAGAAATAAGAAGGCTG | 58.871 | 41.667 | 0.00 | 0.00 | 0.00 | 4.85 |
1510 | 2380 | 4.884164 | GGCATGTAGAAATAAGAAGGCTGT | 59.116 | 41.667 | 0.00 | 0.00 | 0.00 | 4.40 |
1511 | 2381 | 6.055588 | GGCATGTAGAAATAAGAAGGCTGTA | 58.944 | 40.000 | 0.00 | 0.00 | 0.00 | 2.74 |
1512 | 2382 | 6.712547 | GGCATGTAGAAATAAGAAGGCTGTAT | 59.287 | 38.462 | 0.00 | 0.00 | 0.00 | 2.29 |
1513 | 2383 | 7.308229 | GGCATGTAGAAATAAGAAGGCTGTATG | 60.308 | 40.741 | 0.00 | 0.00 | 0.00 | 2.39 |
1514 | 2384 | 7.442364 | GCATGTAGAAATAAGAAGGCTGTATGA | 59.558 | 37.037 | 0.00 | 0.00 | 0.00 | 2.15 |
1515 | 2385 | 9.499479 | CATGTAGAAATAAGAAGGCTGTATGAT | 57.501 | 33.333 | 0.00 | 0.00 | 0.00 | 2.45 |
1525 | 2395 | 5.760253 | AGAAGGCTGTATGATATTTGTTCCG | 59.240 | 40.000 | 0.00 | 0.00 | 0.00 | 4.30 |
1584 | 2498 | 3.321396 | GCCACATAAGTACTACTCCCTCC | 59.679 | 52.174 | 0.00 | 0.00 | 0.00 | 4.30 |
1601 | 2515 | 0.316841 | TCCGTTCCAAAATGCTTGCC | 59.683 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1605 | 2519 | 1.035923 | TTCCAAAATGCTTGCCGTGA | 58.964 | 45.000 | 0.00 | 0.00 | 0.00 | 4.35 |
1873 | 5174 | 3.976793 | AAAGATGCTCAACACACTGTG | 57.023 | 42.857 | 7.68 | 7.68 | 39.75 | 3.66 |
2268 | 5934 | 1.429463 | GGCGGTATGGCTCTTATTCG | 58.571 | 55.000 | 0.00 | 0.00 | 40.72 | 3.34 |
2399 | 6098 | 9.739276 | AATTTGATTCAGTACACTCTCCATTTA | 57.261 | 29.630 | 0.00 | 0.00 | 0.00 | 1.40 |
2487 | 6202 | 7.020602 | CGTCATGCATGTGTTAATTTACAGAA | 58.979 | 34.615 | 25.43 | 0.00 | 0.00 | 3.02 |
2522 | 6240 | 6.494842 | TCTGTTTGCTGTTCTCATTTTGTAC | 58.505 | 36.000 | 0.00 | 0.00 | 0.00 | 2.90 |
2533 | 6254 | 8.622157 | TGTTCTCATTTTGTACGTTGGAAAATA | 58.378 | 29.630 | 0.00 | 0.00 | 30.07 | 1.40 |
3053 | 6949 | 5.868454 | TCATGATGAACTTTGAAGTCTCCA | 58.132 | 37.500 | 0.00 | 0.00 | 38.57 | 3.86 |
3059 | 6955 | 7.449395 | TGATGAACTTTGAAGTCTCCATTGAAT | 59.551 | 33.333 | 0.00 | 0.00 | 38.57 | 2.57 |
3291 | 7249 | 3.922240 | GCACTTTGTTTATGCATGGACAG | 59.078 | 43.478 | 10.16 | 5.83 | 39.23 | 3.51 |
3522 | 7626 | 4.034510 | GTCACGGCTTTTTCCTATCATCTG | 59.965 | 45.833 | 0.00 | 0.00 | 0.00 | 2.90 |
3534 | 7638 | 6.854091 | TCCTATCATCTGATCTCATCCTTG | 57.146 | 41.667 | 0.00 | 0.00 | 36.05 | 3.61 |
3619 | 7726 | 7.011576 | TCGTTACAAGTGCTTGAAATTAAGTGA | 59.988 | 33.333 | 17.62 | 5.37 | 42.93 | 3.41 |
3667 | 7774 | 4.710375 | TCCTAAGGACAAGGACTACACATC | 59.290 | 45.833 | 0.00 | 0.00 | 38.24 | 3.06 |
3721 | 7837 | 2.434702 | CCCTACAATCCTCCGTAAGCTT | 59.565 | 50.000 | 3.48 | 3.48 | 0.00 | 3.74 |
3771 | 7892 | 7.051623 | TCTTGTTTTATGCACCTATATCCGTT | 58.948 | 34.615 | 0.00 | 0.00 | 0.00 | 4.44 |
3824 | 7945 | 7.677041 | GCATCGAACACTTGATCATTGTGATTA | 60.677 | 37.037 | 26.07 | 13.25 | 37.20 | 1.75 |
3836 | 7957 | 4.098349 | TCATTGTGATTATTCCTGCTTGGC | 59.902 | 41.667 | 0.00 | 0.00 | 35.26 | 4.52 |
3876 | 8020 | 6.061022 | TGATACCCAGAGAACAATAAAGCA | 57.939 | 37.500 | 0.00 | 0.00 | 0.00 | 3.91 |
4160 | 8335 | 1.419922 | GACAACATGGTACTGCGCG | 59.580 | 57.895 | 0.00 | 0.00 | 0.00 | 6.86 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
8 | 9 | 7.717875 | AGCTAAACAGTTTGTTCTATGTACCAA | 59.282 | 33.333 | 8.93 | 0.00 | 40.14 | 3.67 |
37 | 44 | 2.819595 | CCACCAGCCACGATTCCG | 60.820 | 66.667 | 0.00 | 0.00 | 42.50 | 4.30 |
55 | 62 | 3.178267 | CACAATTTGTCGTTGTGTTGCT | 58.822 | 40.909 | 10.04 | 0.00 | 46.97 | 3.91 |
66 | 73 | 5.050159 | GCACAGAATTTTCCCACAATTTGTC | 60.050 | 40.000 | 0.00 | 0.00 | 0.00 | 3.18 |
74 | 81 | 1.963515 | ACCAGCACAGAATTTTCCCAC | 59.036 | 47.619 | 0.00 | 0.00 | 0.00 | 4.61 |
86 | 93 | 4.202524 | ACCTCTATTTTTACCACCAGCACA | 60.203 | 41.667 | 0.00 | 0.00 | 0.00 | 4.57 |
105 | 112 | 3.492482 | CCACAATTCAACACCCAAACCTC | 60.492 | 47.826 | 0.00 | 0.00 | 0.00 | 3.85 |
112 | 119 | 7.690952 | TTATACTAACCACAATTCAACACCC | 57.309 | 36.000 | 0.00 | 0.00 | 0.00 | 4.61 |
113 | 120 | 9.567848 | CATTTATACTAACCACAATTCAACACC | 57.432 | 33.333 | 0.00 | 0.00 | 0.00 | 4.16 |
117 | 124 | 8.354711 | TGGCATTTATACTAACCACAATTCAA | 57.645 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
131 | 138 | 6.509418 | TCCAACAAGACTTGGCATTTATAC | 57.491 | 37.500 | 19.16 | 0.00 | 40.66 | 1.47 |
187 | 206 | 9.271828 | CAATATATACTTGCATGGTTGTACAGA | 57.728 | 33.333 | 4.44 | 0.00 | 0.00 | 3.41 |
210 | 231 | 3.485463 | TTCCACAGGACTTCGAACAAT | 57.515 | 42.857 | 0.00 | 0.00 | 0.00 | 2.71 |
211 | 232 | 2.992124 | TTCCACAGGACTTCGAACAA | 57.008 | 45.000 | 0.00 | 0.00 | 0.00 | 2.83 |
216 | 237 | 4.332819 | GGTTATGAATTCCACAGGACTTCG | 59.667 | 45.833 | 2.27 | 0.00 | 42.07 | 3.79 |
237 | 258 | 1.285280 | TGCTGCCTGGTTGTATAGGT | 58.715 | 50.000 | 0.00 | 0.00 | 36.44 | 3.08 |
259 | 280 | 1.024271 | GCTTCAGCTTGTGTGGTCAA | 58.976 | 50.000 | 0.00 | 0.00 | 38.21 | 3.18 |
285 | 307 | 2.233271 | CAGTGACCCATTTGAGCTTGT | 58.767 | 47.619 | 0.00 | 0.00 | 0.00 | 3.16 |
295 | 317 | 2.034879 | CGAAAGCGCAGTGACCCAT | 61.035 | 57.895 | 11.47 | 0.00 | 0.00 | 4.00 |
377 | 402 | 7.621683 | ACTCATAAATTAAAAAGGGGCATACCA | 59.378 | 33.333 | 0.00 | 0.00 | 42.91 | 3.25 |
428 | 453 | 3.639561 | TCGATGGAATATCGGAGGTTGAA | 59.360 | 43.478 | 9.13 | 0.00 | 41.45 | 2.69 |
446 | 471 | 3.834489 | ATGCCTTCTCAGATGTTCGAT | 57.166 | 42.857 | 0.00 | 0.00 | 0.00 | 3.59 |
464 | 489 | 3.688673 | GTCTTCTTCTGCCTTCCTCAATG | 59.311 | 47.826 | 0.00 | 0.00 | 0.00 | 2.82 |
465 | 490 | 3.586618 | AGTCTTCTTCTGCCTTCCTCAAT | 59.413 | 43.478 | 0.00 | 0.00 | 0.00 | 2.57 |
466 | 491 | 2.975489 | AGTCTTCTTCTGCCTTCCTCAA | 59.025 | 45.455 | 0.00 | 0.00 | 0.00 | 3.02 |
468 | 493 | 3.244387 | ACAAGTCTTCTTCTGCCTTCCTC | 60.244 | 47.826 | 0.00 | 0.00 | 0.00 | 3.71 |
471 | 496 | 5.277047 | CAAAACAAGTCTTCTTCTGCCTTC | 58.723 | 41.667 | 0.00 | 0.00 | 0.00 | 3.46 |
476 | 501 | 9.403110 | CATTATTCCAAAACAAGTCTTCTTCTG | 57.597 | 33.333 | 0.00 | 0.00 | 0.00 | 3.02 |
508 | 533 | 3.130164 | CCACCATACAGAGACAGAGAGTG | 59.870 | 52.174 | 0.00 | 0.00 | 0.00 | 3.51 |
509 | 534 | 3.245443 | ACCACCATACAGAGACAGAGAGT | 60.245 | 47.826 | 0.00 | 0.00 | 0.00 | 3.24 |
510 | 535 | 3.360867 | ACCACCATACAGAGACAGAGAG | 58.639 | 50.000 | 0.00 | 0.00 | 0.00 | 3.20 |
511 | 536 | 3.458044 | ACCACCATACAGAGACAGAGA | 57.542 | 47.619 | 0.00 | 0.00 | 0.00 | 3.10 |
512 | 537 | 3.259374 | ACAACCACCATACAGAGACAGAG | 59.741 | 47.826 | 0.00 | 0.00 | 0.00 | 3.35 |
513 | 538 | 3.239449 | ACAACCACCATACAGAGACAGA | 58.761 | 45.455 | 0.00 | 0.00 | 0.00 | 3.41 |
514 | 539 | 3.685139 | ACAACCACCATACAGAGACAG | 57.315 | 47.619 | 0.00 | 0.00 | 0.00 | 3.51 |
515 | 540 | 3.898741 | TGTACAACCACCATACAGAGACA | 59.101 | 43.478 | 0.00 | 0.00 | 0.00 | 3.41 |
548 | 573 | 4.960938 | ACGGTGTGATTGACATGCTATAT | 58.039 | 39.130 | 0.00 | 0.00 | 36.78 | 0.86 |
549 | 574 | 4.099419 | AGACGGTGTGATTGACATGCTATA | 59.901 | 41.667 | 0.00 | 0.00 | 36.78 | 1.31 |
550 | 575 | 3.118629 | AGACGGTGTGATTGACATGCTAT | 60.119 | 43.478 | 0.00 | 0.00 | 36.78 | 2.97 |
551 | 576 | 2.233676 | AGACGGTGTGATTGACATGCTA | 59.766 | 45.455 | 0.00 | 0.00 | 36.78 | 3.49 |
552 | 577 | 1.002430 | AGACGGTGTGATTGACATGCT | 59.998 | 47.619 | 0.00 | 0.00 | 36.78 | 3.79 |
569 | 594 | 1.590238 | CCATCGAGATTCAACGCAGAC | 59.410 | 52.381 | 0.00 | 0.00 | 0.00 | 3.51 |
571 | 596 | 1.926561 | TCCATCGAGATTCAACGCAG | 58.073 | 50.000 | 0.00 | 0.00 | 0.00 | 5.18 |
572 | 597 | 2.378445 | TTCCATCGAGATTCAACGCA | 57.622 | 45.000 | 0.00 | 0.00 | 0.00 | 5.24 |
573 | 598 | 2.609459 | ACATTCCATCGAGATTCAACGC | 59.391 | 45.455 | 0.00 | 0.00 | 0.00 | 4.84 |
574 | 599 | 4.864916 | AACATTCCATCGAGATTCAACG | 57.135 | 40.909 | 0.00 | 0.00 | 0.00 | 4.10 |
575 | 600 | 6.316390 | ACCTAAACATTCCATCGAGATTCAAC | 59.684 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
576 | 601 | 6.414732 | ACCTAAACATTCCATCGAGATTCAA | 58.585 | 36.000 | 0.00 | 0.00 | 0.00 | 2.69 |
577 | 602 | 5.989477 | ACCTAAACATTCCATCGAGATTCA | 58.011 | 37.500 | 0.00 | 0.00 | 0.00 | 2.57 |
578 | 603 | 6.238484 | CCAACCTAAACATTCCATCGAGATTC | 60.238 | 42.308 | 0.00 | 0.00 | 0.00 | 2.52 |
579 | 604 | 5.590259 | CCAACCTAAACATTCCATCGAGATT | 59.410 | 40.000 | 0.00 | 0.00 | 0.00 | 2.40 |
581 | 606 | 4.224147 | TCCAACCTAAACATTCCATCGAGA | 59.776 | 41.667 | 0.00 | 0.00 | 0.00 | 4.04 |
583 | 608 | 4.561500 | TCCAACCTAAACATTCCATCGA | 57.438 | 40.909 | 0.00 | 0.00 | 0.00 | 3.59 |
585 | 610 | 5.047377 | TGCTTTCCAACCTAAACATTCCATC | 60.047 | 40.000 | 0.00 | 0.00 | 0.00 | 3.51 |
586 | 611 | 4.837860 | TGCTTTCCAACCTAAACATTCCAT | 59.162 | 37.500 | 0.00 | 0.00 | 0.00 | 3.41 |
587 | 612 | 4.219115 | TGCTTTCCAACCTAAACATTCCA | 58.781 | 39.130 | 0.00 | 0.00 | 0.00 | 3.53 |
590 | 615 | 4.100808 | TGCTTGCTTTCCAACCTAAACATT | 59.899 | 37.500 | 0.00 | 0.00 | 0.00 | 2.71 |
592 | 617 | 3.027412 | TGCTTGCTTTCCAACCTAAACA | 58.973 | 40.909 | 0.00 | 0.00 | 0.00 | 2.83 |
593 | 618 | 3.181480 | TGTGCTTGCTTTCCAACCTAAAC | 60.181 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
596 | 621 | 2.356665 | TGTGCTTGCTTTCCAACCTA | 57.643 | 45.000 | 0.00 | 0.00 | 0.00 | 3.08 |
597 | 622 | 1.410153 | CTTGTGCTTGCTTTCCAACCT | 59.590 | 47.619 | 0.00 | 0.00 | 0.00 | 3.50 |
598 | 623 | 1.408702 | TCTTGTGCTTGCTTTCCAACC | 59.591 | 47.619 | 0.00 | 0.00 | 0.00 | 3.77 |
599 | 624 | 2.869233 | TCTTGTGCTTGCTTTCCAAC | 57.131 | 45.000 | 0.00 | 0.00 | 0.00 | 3.77 |
600 | 625 | 2.957680 | TCATCTTGTGCTTGCTTTCCAA | 59.042 | 40.909 | 0.00 | 0.00 | 0.00 | 3.53 |
602 | 627 | 3.648339 | TTCATCTTGTGCTTGCTTTCC | 57.352 | 42.857 | 0.00 | 0.00 | 0.00 | 3.13 |
603 | 628 | 4.857588 | CAGATTCATCTTGTGCTTGCTTTC | 59.142 | 41.667 | 0.00 | 0.00 | 34.22 | 2.62 |
604 | 629 | 4.280174 | ACAGATTCATCTTGTGCTTGCTTT | 59.720 | 37.500 | 0.00 | 0.00 | 34.22 | 3.51 |
605 | 630 | 3.825014 | ACAGATTCATCTTGTGCTTGCTT | 59.175 | 39.130 | 0.00 | 0.00 | 34.22 | 3.91 |
607 | 632 | 3.844577 | ACAGATTCATCTTGTGCTTGC | 57.155 | 42.857 | 0.00 | 0.00 | 34.22 | 4.01 |
608 | 633 | 8.429493 | TCTAATACAGATTCATCTTGTGCTTG | 57.571 | 34.615 | 0.00 | 0.00 | 34.22 | 4.01 |
610 | 635 | 9.107177 | CTTTCTAATACAGATTCATCTTGTGCT | 57.893 | 33.333 | 0.00 | 0.00 | 34.22 | 4.40 |
611 | 636 | 8.887717 | ACTTTCTAATACAGATTCATCTTGTGC | 58.112 | 33.333 | 0.00 | 0.00 | 34.22 | 4.57 |
624 | 649 | 8.132362 | AGCTCTCGTTATCACTTTCTAATACAG | 58.868 | 37.037 | 0.00 | 0.00 | 0.00 | 2.74 |
625 | 650 | 7.915923 | CAGCTCTCGTTATCACTTTCTAATACA | 59.084 | 37.037 | 0.00 | 0.00 | 0.00 | 2.29 |
626 | 651 | 7.916450 | ACAGCTCTCGTTATCACTTTCTAATAC | 59.084 | 37.037 | 0.00 | 0.00 | 0.00 | 1.89 |
627 | 652 | 7.997482 | ACAGCTCTCGTTATCACTTTCTAATA | 58.003 | 34.615 | 0.00 | 0.00 | 0.00 | 0.98 |
628 | 653 | 6.868622 | ACAGCTCTCGTTATCACTTTCTAAT | 58.131 | 36.000 | 0.00 | 0.00 | 0.00 | 1.73 |
630 | 655 | 5.899120 | ACAGCTCTCGTTATCACTTTCTA | 57.101 | 39.130 | 0.00 | 0.00 | 0.00 | 2.10 |
631 | 656 | 4.792521 | ACAGCTCTCGTTATCACTTTCT | 57.207 | 40.909 | 0.00 | 0.00 | 0.00 | 2.52 |
632 | 657 | 5.164954 | AGAACAGCTCTCGTTATCACTTTC | 58.835 | 41.667 | 0.00 | 0.00 | 0.00 | 2.62 |
633 | 658 | 5.140747 | AGAACAGCTCTCGTTATCACTTT | 57.859 | 39.130 | 0.00 | 0.00 | 0.00 | 2.66 |
634 | 659 | 4.739195 | GAGAACAGCTCTCGTTATCACTT | 58.261 | 43.478 | 5.45 | 0.00 | 41.34 | 3.16 |
635 | 660 | 4.364415 | GAGAACAGCTCTCGTTATCACT | 57.636 | 45.455 | 5.45 | 0.00 | 41.34 | 3.41 |
646 | 671 | 3.056304 | GTGTGAGTTCAGAGAACAGCTC | 58.944 | 50.000 | 11.92 | 2.48 | 44.29 | 4.09 |
649 | 674 | 3.355626 | TCGTGTGAGTTCAGAGAACAG | 57.644 | 47.619 | 11.92 | 0.00 | 0.00 | 3.16 |
650 | 675 | 4.051237 | CAATCGTGTGAGTTCAGAGAACA | 58.949 | 43.478 | 11.92 | 0.00 | 0.00 | 3.18 |
651 | 676 | 4.051922 | ACAATCGTGTGAGTTCAGAGAAC | 58.948 | 43.478 | 1.77 | 1.77 | 36.31 | 3.01 |
653 | 678 | 4.202111 | TGAACAATCGTGTGAGTTCAGAGA | 60.202 | 41.667 | 0.00 | 0.00 | 43.66 | 3.10 |
654 | 679 | 4.051237 | TGAACAATCGTGTGAGTTCAGAG | 58.949 | 43.478 | 0.00 | 0.00 | 43.66 | 3.35 |
655 | 680 | 4.053469 | TGAACAATCGTGTGAGTTCAGA | 57.947 | 40.909 | 0.00 | 0.00 | 43.66 | 3.27 |
658 | 683 | 4.051922 | ACTCTGAACAATCGTGTGAGTTC | 58.948 | 43.478 | 0.00 | 0.00 | 35.90 | 3.01 |
659 | 684 | 4.060038 | ACTCTGAACAATCGTGTGAGTT | 57.940 | 40.909 | 0.00 | 0.00 | 35.90 | 3.01 |
660 | 685 | 3.735237 | ACTCTGAACAATCGTGTGAGT | 57.265 | 42.857 | 0.00 | 0.00 | 38.27 | 3.41 |
661 | 686 | 7.489435 | ACATAATACTCTGAACAATCGTGTGAG | 59.511 | 37.037 | 0.00 | 0.00 | 38.27 | 3.51 |
662 | 687 | 7.320399 | ACATAATACTCTGAACAATCGTGTGA | 58.680 | 34.615 | 0.00 | 0.00 | 38.27 | 3.58 |
663 | 688 | 7.525688 | ACATAATACTCTGAACAATCGTGTG | 57.474 | 36.000 | 0.00 | 0.00 | 38.27 | 3.82 |
664 | 689 | 9.302345 | CTAACATAATACTCTGAACAATCGTGT | 57.698 | 33.333 | 0.00 | 0.00 | 40.75 | 4.49 |
665 | 690 | 8.755941 | CCTAACATAATACTCTGAACAATCGTG | 58.244 | 37.037 | 0.00 | 0.00 | 0.00 | 4.35 |
666 | 691 | 8.475639 | ACCTAACATAATACTCTGAACAATCGT | 58.524 | 33.333 | 0.00 | 0.00 | 0.00 | 3.73 |
667 | 692 | 8.755941 | CACCTAACATAATACTCTGAACAATCG | 58.244 | 37.037 | 0.00 | 0.00 | 0.00 | 3.34 |
671 | 696 | 6.156256 | AGGCACCTAACATAATACTCTGAACA | 59.844 | 38.462 | 0.00 | 0.00 | 0.00 | 3.18 |
672 | 697 | 6.480320 | CAGGCACCTAACATAATACTCTGAAC | 59.520 | 42.308 | 0.00 | 0.00 | 0.00 | 3.18 |
673 | 698 | 6.582636 | CAGGCACCTAACATAATACTCTGAA | 58.417 | 40.000 | 0.00 | 0.00 | 0.00 | 3.02 |
674 | 699 | 5.453339 | GCAGGCACCTAACATAATACTCTGA | 60.453 | 44.000 | 0.00 | 0.00 | 0.00 | 3.27 |
678 | 703 | 3.716872 | AGGCAGGCACCTAACATAATACT | 59.283 | 43.478 | 0.00 | 0.00 | 38.67 | 2.12 |
680 | 705 | 5.223449 | GTAGGCAGGCACCTAACATAATA | 57.777 | 43.478 | 7.78 | 0.00 | 43.91 | 0.98 |
682 | 707 | 3.553828 | GTAGGCAGGCACCTAACATAA | 57.446 | 47.619 | 7.78 | 0.00 | 43.91 | 1.90 |
686 | 711 | 4.957164 | GGTAGGCAGGCACCTAAC | 57.043 | 61.111 | 7.78 | 6.86 | 43.91 | 2.34 |
687 | 712 | 0.042731 | AGAGGTAGGCAGGCACCTAA | 59.957 | 55.000 | 15.23 | 0.00 | 45.32 | 2.69 |
688 | 713 | 0.397254 | GAGAGGTAGGCAGGCACCTA | 60.397 | 60.000 | 15.23 | 2.43 | 45.32 | 3.08 |
690 | 715 | 1.681486 | GAGAGAGGTAGGCAGGCACC | 61.681 | 65.000 | 0.00 | 2.03 | 34.86 | 5.01 |
691 | 716 | 0.686112 | AGAGAGAGGTAGGCAGGCAC | 60.686 | 60.000 | 0.00 | 0.00 | 0.00 | 5.01 |
692 | 717 | 0.396417 | GAGAGAGAGGTAGGCAGGCA | 60.396 | 60.000 | 0.00 | 0.00 | 0.00 | 4.75 |
693 | 718 | 0.106217 | AGAGAGAGAGGTAGGCAGGC | 60.106 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
694 | 719 | 1.691196 | CAGAGAGAGAGGTAGGCAGG | 58.309 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
695 | 720 | 1.032014 | GCAGAGAGAGAGGTAGGCAG | 58.968 | 60.000 | 0.00 | 0.00 | 0.00 | 4.85 |
696 | 721 | 0.332972 | TGCAGAGAGAGAGGTAGGCA | 59.667 | 55.000 | 0.00 | 0.00 | 0.00 | 4.75 |
697 | 722 | 1.479709 | TTGCAGAGAGAGAGGTAGGC | 58.520 | 55.000 | 0.00 | 0.00 | 0.00 | 3.93 |
698 | 723 | 4.405358 | AGAAATTGCAGAGAGAGAGGTAGG | 59.595 | 45.833 | 0.00 | 0.00 | 0.00 | 3.18 |
699 | 724 | 5.596836 | AGAAATTGCAGAGAGAGAGGTAG | 57.403 | 43.478 | 0.00 | 0.00 | 0.00 | 3.18 |
700 | 725 | 7.667575 | ATTAGAAATTGCAGAGAGAGAGGTA | 57.332 | 36.000 | 0.00 | 0.00 | 0.00 | 3.08 |
701 | 726 | 6.558488 | ATTAGAAATTGCAGAGAGAGAGGT | 57.442 | 37.500 | 0.00 | 0.00 | 0.00 | 3.85 |
702 | 727 | 9.638239 | GTATATTAGAAATTGCAGAGAGAGAGG | 57.362 | 37.037 | 0.00 | 0.00 | 0.00 | 3.69 |
703 | 728 | 9.638239 | GGTATATTAGAAATTGCAGAGAGAGAG | 57.362 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
704 | 729 | 9.147732 | TGGTATATTAGAAATTGCAGAGAGAGA | 57.852 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
705 | 730 | 9.941325 | ATGGTATATTAGAAATTGCAGAGAGAG | 57.059 | 33.333 | 0.00 | 0.00 | 0.00 | 3.20 |
706 | 731 | 9.716531 | CATGGTATATTAGAAATTGCAGAGAGA | 57.283 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
707 | 732 | 8.449397 | GCATGGTATATTAGAAATTGCAGAGAG | 58.551 | 37.037 | 0.00 | 0.00 | 0.00 | 3.20 |
708 | 733 | 8.159447 | AGCATGGTATATTAGAAATTGCAGAGA | 58.841 | 33.333 | 0.00 | 0.00 | 0.00 | 3.10 |
709 | 734 | 8.332996 | AGCATGGTATATTAGAAATTGCAGAG | 57.667 | 34.615 | 0.00 | 0.00 | 0.00 | 3.35 |
711 | 736 | 8.235226 | CAGAGCATGGTATATTAGAAATTGCAG | 58.765 | 37.037 | 0.00 | 0.00 | 0.00 | 4.41 |
755 | 1623 | 9.205719 | CTCAATTAGATCATGTGACAGGATAAG | 57.794 | 37.037 | 13.10 | 0.60 | 34.96 | 1.73 |
835 | 1703 | 6.985188 | TTCATGACACTAAGCCTGAAATAC | 57.015 | 37.500 | 0.00 | 0.00 | 0.00 | 1.89 |
869 | 1737 | 2.354510 | CTCAGTTCTTCGCACCAACAAA | 59.645 | 45.455 | 0.00 | 0.00 | 0.00 | 2.83 |
972 | 1840 | 6.884836 | GGTCCACTATTTGTCTTAACCTCAAT | 59.115 | 38.462 | 0.00 | 0.00 | 0.00 | 2.57 |
991 | 1859 | 1.237285 | AAGACTTGCATGCGGTCCAC | 61.237 | 55.000 | 28.16 | 13.38 | 0.00 | 4.02 |
998 | 1866 | 2.035066 | ACTTCCAACAAGACTTGCATGC | 59.965 | 45.455 | 15.24 | 11.82 | 0.00 | 4.06 |
999 | 1867 | 3.316029 | TGACTTCCAACAAGACTTGCATG | 59.684 | 43.478 | 15.24 | 13.61 | 0.00 | 4.06 |
1000 | 1868 | 3.554934 | TGACTTCCAACAAGACTTGCAT | 58.445 | 40.909 | 15.24 | 1.67 | 0.00 | 3.96 |
1001 | 1869 | 2.997980 | TGACTTCCAACAAGACTTGCA | 58.002 | 42.857 | 15.24 | 0.00 | 0.00 | 4.08 |
1086 | 1954 | 4.034510 | GCGCTAGTAGTAGACTTTTACCGA | 59.965 | 45.833 | 8.87 | 0.00 | 39.81 | 4.69 |
1113 | 1981 | 1.656652 | GCAATCCAGCAGACGTACAT | 58.343 | 50.000 | 0.00 | 0.00 | 0.00 | 2.29 |
1228 | 2096 | 2.548067 | GGAGCAGGTTGAAAGAGACGAA | 60.548 | 50.000 | 0.00 | 0.00 | 0.00 | 3.85 |
1231 | 2099 | 2.694213 | GAGGAGCAGGTTGAAAGAGAC | 58.306 | 52.381 | 0.00 | 0.00 | 0.00 | 3.36 |
1288 | 2156 | 6.147821 | ACTCACTATCATTCGAAAACCAACAG | 59.852 | 38.462 | 0.00 | 0.00 | 0.00 | 3.16 |
1314 | 2182 | 5.836898 | TGTACAGAGAACACCTCCTTTTAGA | 59.163 | 40.000 | 0.00 | 0.00 | 42.97 | 2.10 |
1339 | 2207 | 5.276461 | TCACACACATGCTAACTATAGGG | 57.724 | 43.478 | 4.43 | 0.00 | 0.00 | 3.53 |
1343 | 2211 | 4.943093 | TGCAATCACACACATGCTAACTAT | 59.057 | 37.500 | 0.00 | 0.00 | 39.49 | 2.12 |
1355 | 2223 | 2.566833 | AGGCTAGTTGCAATCACACA | 57.433 | 45.000 | 0.59 | 0.00 | 45.15 | 3.72 |
1416 | 2284 | 6.499436 | ACTAGCAAATACCCCAATAACCTTT | 58.501 | 36.000 | 0.00 | 0.00 | 0.00 | 3.11 |
1419 | 2287 | 6.127101 | AGAACTAGCAAATACCCCAATAACC | 58.873 | 40.000 | 0.00 | 0.00 | 0.00 | 2.85 |
1420 | 2288 | 6.018180 | CGAGAACTAGCAAATACCCCAATAAC | 60.018 | 42.308 | 0.00 | 0.00 | 0.00 | 1.89 |
1454 | 2324 | 7.259088 | ACTTATTGACAGAAAGGGTGAGTAT | 57.741 | 36.000 | 4.47 | 0.00 | 0.00 | 2.12 |
1464 | 2334 | 7.090173 | GCCTAATGCAAACTTATTGACAGAAA | 58.910 | 34.615 | 0.00 | 0.00 | 40.77 | 2.52 |
1509 | 2379 | 6.018994 | GGACTGACACGGAACAAATATCATAC | 60.019 | 42.308 | 0.00 | 0.00 | 0.00 | 2.39 |
1510 | 2380 | 6.046593 | GGACTGACACGGAACAAATATCATA | 58.953 | 40.000 | 0.00 | 0.00 | 0.00 | 2.15 |
1511 | 2381 | 4.876107 | GGACTGACACGGAACAAATATCAT | 59.124 | 41.667 | 0.00 | 0.00 | 0.00 | 2.45 |
1512 | 2382 | 4.020573 | AGGACTGACACGGAACAAATATCA | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 2.15 |
1513 | 2383 | 4.330074 | CAGGACTGACACGGAACAAATATC | 59.670 | 45.833 | 0.00 | 0.00 | 0.00 | 1.63 |
1514 | 2384 | 4.253685 | CAGGACTGACACGGAACAAATAT | 58.746 | 43.478 | 0.00 | 0.00 | 0.00 | 1.28 |
1515 | 2385 | 3.659786 | CAGGACTGACACGGAACAAATA | 58.340 | 45.455 | 0.00 | 0.00 | 0.00 | 1.40 |
1516 | 2386 | 2.494059 | CAGGACTGACACGGAACAAAT | 58.506 | 47.619 | 0.00 | 0.00 | 0.00 | 2.32 |
1517 | 2387 | 1.948104 | CAGGACTGACACGGAACAAA | 58.052 | 50.000 | 0.00 | 0.00 | 0.00 | 2.83 |
1518 | 2388 | 0.531974 | GCAGGACTGACACGGAACAA | 60.532 | 55.000 | 3.00 | 0.00 | 0.00 | 2.83 |
1519 | 2389 | 1.069090 | GCAGGACTGACACGGAACA | 59.931 | 57.895 | 3.00 | 0.00 | 0.00 | 3.18 |
1520 | 2390 | 1.668151 | GGCAGGACTGACACGGAAC | 60.668 | 63.158 | 3.00 | 0.00 | 38.82 | 3.62 |
1584 | 2498 | 0.318614 | ACGGCAAGCATTTTGGAACG | 60.319 | 50.000 | 0.00 | 0.00 | 0.00 | 3.95 |
1669 | 2631 | 5.063880 | GGTAATCAGTGCCCTTTATACAGG | 58.936 | 45.833 | 0.00 | 0.00 | 0.00 | 4.00 |
1754 | 5054 | 2.375174 | TGTAGGGAAAGCATGTGGAGTT | 59.625 | 45.455 | 0.00 | 0.00 | 0.00 | 3.01 |
1796 | 5097 | 7.112779 | AGATTATAAGTTTGGTTGGACAGGAG | 58.887 | 38.462 | 0.00 | 0.00 | 0.00 | 3.69 |
2124 | 5775 | 4.334759 | GCATGCTCTGCGGATGATTATTAT | 59.665 | 41.667 | 11.37 | 0.00 | 43.46 | 1.28 |
2268 | 5934 | 9.832445 | TGAATTATCTGAGAATAACCAACTACC | 57.168 | 33.333 | 0.00 | 0.00 | 0.00 | 3.18 |
2298 | 5964 | 4.217767 | GGAAAACTAGTTGGCCAAGTAAGG | 59.782 | 45.833 | 28.68 | 21.52 | 0.00 | 2.69 |
2347 | 6045 | 6.766452 | ACTACGAAACTTTTACTGAAGAGC | 57.234 | 37.500 | 0.00 | 0.00 | 0.00 | 4.09 |
2399 | 6098 | 9.753674 | TTTCAGATGAAACCTAAGACCAATATT | 57.246 | 29.630 | 3.91 | 0.00 | 38.94 | 1.28 |
2487 | 6202 | 2.614057 | CAGCAAACAGAGAACCGTCTTT | 59.386 | 45.455 | 0.00 | 0.00 | 32.80 | 2.52 |
2522 | 6240 | 5.327091 | CATCAAGCTCTGTATTTTCCAACG | 58.673 | 41.667 | 0.00 | 0.00 | 0.00 | 4.10 |
3053 | 6949 | 4.406648 | TGTGCCGTCTGAGATATTCAAT | 57.593 | 40.909 | 0.00 | 0.00 | 34.81 | 2.57 |
3059 | 6955 | 6.459670 | TTAAAGTATGTGCCGTCTGAGATA | 57.540 | 37.500 | 0.00 | 0.00 | 0.00 | 1.98 |
3291 | 7249 | 8.887717 | GGTATATGAGGCAAGATACAATGAATC | 58.112 | 37.037 | 7.13 | 0.00 | 0.00 | 2.52 |
3522 | 7626 | 8.738645 | ATACAAACTTAACCAAGGATGAGATC | 57.261 | 34.615 | 0.00 | 0.00 | 35.97 | 2.75 |
3534 | 7638 | 8.276252 | TCTTGATGCCTAATACAAACTTAACC | 57.724 | 34.615 | 0.00 | 0.00 | 0.00 | 2.85 |
3642 | 7749 | 4.710375 | TGTGTAGTCCTTGTCCTTAGGATC | 59.290 | 45.833 | 3.52 | 0.00 | 43.39 | 3.36 |
3667 | 7774 | 2.764269 | TCCTTGTCCTTAGGATGGAGG | 58.236 | 52.381 | 16.46 | 16.46 | 36.88 | 4.30 |
3771 | 7892 | 5.255710 | ACGGAACAAATGAATGTGAACAA | 57.744 | 34.783 | 0.00 | 0.00 | 32.81 | 2.83 |
3824 | 7945 | 0.178953 | ACCTTGTGCCAAGCAGGAAT | 60.179 | 50.000 | 8.85 | 0.00 | 40.08 | 3.01 |
3836 | 7957 | 8.343168 | TGGGTATCAAAGTAAAATACCTTGTG | 57.657 | 34.615 | 9.85 | 0.00 | 42.94 | 3.33 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.