Multiple sequence alignment - TraesCS1A01G005000
BLAST Results
Shown here are the results of a BLAST search against the genome using the input sequence. The pipeline uses this to extract flanking regions for cloning. If the result of the multiple sequence alignment is not as expected, these results could be used for further investigation.
qseqid | sseqid | percentage.identical | alignment.length | no.mismatch | no.gap.openings | qstart | qend | sstart | send | evalue | bitscore | |
---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G005000 | chr1A | 100.000 | 3581 | 0 | 0 | 1 | 3581 | 2974187 | 2977767 | 0.000000e+00 | 6613.0 |
1 | TraesCS1A01G005000 | chr1A | 89.463 | 2572 | 258 | 8 | 1017 | 3581 | 3453535 | 3450970 | 0.000000e+00 | 3236.0 |
2 | TraesCS1A01G005000 | chr1A | 89.283 | 2566 | 249 | 11 | 1017 | 3578 | 3680247 | 3677704 | 0.000000e+00 | 3192.0 |
3 | TraesCS1A01G005000 | chr1A | 97.920 | 673 | 13 | 1 | 349 | 1020 | 535839096 | 535838424 | 0.000000e+00 | 1164.0 |
4 | TraesCS1A01G005000 | chr1A | 87.162 | 148 | 10 | 6 | 3434 | 3578 | 3488366 | 3488225 | 3.700000e-35 | 159.0 |
5 | TraesCS1A01G005000 | chr1A | 85.714 | 147 | 11 | 6 | 3434 | 3578 | 3669098 | 3668960 | 2.880000e-31 | 147.0 |
6 | TraesCS1A01G005000 | chr1A | 88.889 | 117 | 9 | 3 | 3434 | 3547 | 2986018 | 2986133 | 1.340000e-29 | 141.0 |
7 | TraesCS1A01G005000 | chr1D | 90.237 | 2571 | 235 | 9 | 1017 | 3578 | 619957 | 617394 | 0.000000e+00 | 3343.0 |
8 | TraesCS1A01G005000 | chr1D | 86.401 | 2581 | 291 | 38 | 1017 | 3578 | 448366 | 450905 | 0.000000e+00 | 2767.0 |
9 | TraesCS1A01G005000 | chr1D | 86.277 | 2514 | 310 | 21 | 1073 | 3581 | 696761 | 694278 | 0.000000e+00 | 2699.0 |
10 | TraesCS1A01G005000 | chr1D | 93.333 | 45 | 2 | 1 | 3511 | 3554 | 220062149 | 220062105 | 8.300000e-07 | 65.8 |
11 | TraesCS1A01G005000 | chr1B | 90.459 | 2547 | 216 | 16 | 1017 | 3551 | 4115719 | 4118250 | 0.000000e+00 | 3332.0 |
12 | TraesCS1A01G005000 | chr1B | 89.014 | 2576 | 258 | 17 | 1017 | 3578 | 4560458 | 4557894 | 0.000000e+00 | 3166.0 |
13 | TraesCS1A01G005000 | chr1B | 89.315 | 2527 | 252 | 10 | 1017 | 3532 | 4482487 | 4479968 | 0.000000e+00 | 3155.0 |
14 | TraesCS1A01G005000 | chr1B | 88.167 | 2324 | 260 | 12 | 1017 | 3337 | 3943565 | 3945876 | 0.000000e+00 | 2754.0 |
15 | TraesCS1A01G005000 | chr1B | 99.429 | 350 | 1 | 1 | 1 | 350 | 531563504 | 531563852 | 5.040000e-178 | 634.0 |
16 | TraesCS1A01G005000 | chr1B | 86.486 | 148 | 12 | 5 | 3434 | 3578 | 4759007 | 4758865 | 4.790000e-34 | 156.0 |
17 | TraesCS1A01G005000 | chr3D | 87.854 | 2363 | 267 | 13 | 1017 | 3371 | 560056929 | 560054579 | 0.000000e+00 | 2756.0 |
18 | TraesCS1A01G005000 | chr4A | 98.514 | 673 | 9 | 1 | 349 | 1020 | 93069943 | 93069271 | 0.000000e+00 | 1186.0 |
19 | TraesCS1A01G005000 | chr4A | 97.920 | 673 | 13 | 1 | 349 | 1020 | 75167373 | 75168045 | 0.000000e+00 | 1164.0 |
20 | TraesCS1A01G005000 | chr2A | 98.217 | 673 | 11 | 1 | 349 | 1020 | 687106249 | 687105577 | 0.000000e+00 | 1175.0 |
21 | TraesCS1A01G005000 | chr2A | 98.071 | 674 | 11 | 2 | 349 | 1020 | 625806705 | 625807378 | 0.000000e+00 | 1171.0 |
22 | TraesCS1A01G005000 | chr6A | 98.071 | 674 | 12 | 1 | 348 | 1020 | 185345591 | 185344918 | 0.000000e+00 | 1171.0 |
23 | TraesCS1A01G005000 | chr6A | 99.425 | 348 | 2 | 0 | 1 | 348 | 531033783 | 531034130 | 1.810000e-177 | 632.0 |
24 | TraesCS1A01G005000 | chr7A | 97.920 | 673 | 13 | 1 | 349 | 1020 | 83118098 | 83118770 | 0.000000e+00 | 1164.0 |
25 | TraesCS1A01G005000 | chr5A | 97.920 | 673 | 13 | 1 | 349 | 1020 | 578804903 | 578804231 | 0.000000e+00 | 1164.0 |
26 | TraesCS1A01G005000 | chr3A | 97.920 | 673 | 13 | 1 | 349 | 1020 | 503079541 | 503080213 | 0.000000e+00 | 1164.0 |
27 | TraesCS1A01G005000 | chr5B | 99.716 | 352 | 1 | 0 | 1 | 352 | 563088099 | 563088450 | 0.000000e+00 | 645.0 |
28 | TraesCS1A01G005000 | chrUn | 99.715 | 351 | 1 | 0 | 1 | 351 | 350702171 | 350701821 | 0.000000e+00 | 643.0 |
29 | TraesCS1A01G005000 | chrUn | 100.000 | 348 | 0 | 0 | 1 | 348 | 469750225 | 469750572 | 0.000000e+00 | 643.0 |
30 | TraesCS1A01G005000 | chrUn | 99.713 | 349 | 0 | 1 | 1 | 349 | 231150810 | 231151157 | 3.900000e-179 | 638.0 |
31 | TraesCS1A01G005000 | chrUn | 99.713 | 348 | 0 | 1 | 1 | 348 | 430750063 | 430749717 | 1.400000e-178 | 636.0 |
32 | TraesCS1A01G005000 | chr7B | 98.886 | 359 | 2 | 2 | 1 | 358 | 218539861 | 218539504 | 1.080000e-179 | 640.0 |
33 | TraesCS1A01G005000 | chr4B | 99.713 | 348 | 0 | 1 | 1 | 348 | 310959218 | 310958872 | 1.400000e-178 | 636.0 |
These results show the homologous regions that are presented in the multiple sequence alignment. HSPs from the BLAST search that are within 2000 bases of each other have been grouped together. Homologous regions that are purely upstream or downstream may be removed if they don't overlap both primers.
query | scaffold | start | end | length | rev.comp | avg.bitscore | max.bitscore | avg.percent.identical | query.start | query.end | num_hsp | groupid | homo_length | |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
0 | TraesCS1A01G005000 | chr1A | 2974187 | 2977767 | 3580 | False | 6613 | 6613 | 100.000 | 1 | 3581 | 1 | chr1A.!!$F1 | 3580 |
1 | TraesCS1A01G005000 | chr1A | 3450970 | 3453535 | 2565 | True | 3236 | 3236 | 89.463 | 1017 | 3581 | 1 | chr1A.!!$R1 | 2564 |
2 | TraesCS1A01G005000 | chr1A | 3677704 | 3680247 | 2543 | True | 3192 | 3192 | 89.283 | 1017 | 3578 | 1 | chr1A.!!$R4 | 2561 |
3 | TraesCS1A01G005000 | chr1A | 535838424 | 535839096 | 672 | True | 1164 | 1164 | 97.920 | 349 | 1020 | 1 | chr1A.!!$R5 | 671 |
4 | TraesCS1A01G005000 | chr1D | 617394 | 619957 | 2563 | True | 3343 | 3343 | 90.237 | 1017 | 3578 | 1 | chr1D.!!$R1 | 2561 |
5 | TraesCS1A01G005000 | chr1D | 448366 | 450905 | 2539 | False | 2767 | 2767 | 86.401 | 1017 | 3578 | 1 | chr1D.!!$F1 | 2561 |
6 | TraesCS1A01G005000 | chr1D | 694278 | 696761 | 2483 | True | 2699 | 2699 | 86.277 | 1073 | 3581 | 1 | chr1D.!!$R2 | 2508 |
7 | TraesCS1A01G005000 | chr1B | 4115719 | 4118250 | 2531 | False | 3332 | 3332 | 90.459 | 1017 | 3551 | 1 | chr1B.!!$F2 | 2534 |
8 | TraesCS1A01G005000 | chr1B | 4557894 | 4560458 | 2564 | True | 3166 | 3166 | 89.014 | 1017 | 3578 | 1 | chr1B.!!$R2 | 2561 |
9 | TraesCS1A01G005000 | chr1B | 4479968 | 4482487 | 2519 | True | 3155 | 3155 | 89.315 | 1017 | 3532 | 1 | chr1B.!!$R1 | 2515 |
10 | TraesCS1A01G005000 | chr1B | 3943565 | 3945876 | 2311 | False | 2754 | 2754 | 88.167 | 1017 | 3337 | 1 | chr1B.!!$F1 | 2320 |
11 | TraesCS1A01G005000 | chr3D | 560054579 | 560056929 | 2350 | True | 2756 | 2756 | 87.854 | 1017 | 3371 | 1 | chr3D.!!$R1 | 2354 |
12 | TraesCS1A01G005000 | chr4A | 93069271 | 93069943 | 672 | True | 1186 | 1186 | 98.514 | 349 | 1020 | 1 | chr4A.!!$R1 | 671 |
13 | TraesCS1A01G005000 | chr4A | 75167373 | 75168045 | 672 | False | 1164 | 1164 | 97.920 | 349 | 1020 | 1 | chr4A.!!$F1 | 671 |
14 | TraesCS1A01G005000 | chr2A | 687105577 | 687106249 | 672 | True | 1175 | 1175 | 98.217 | 349 | 1020 | 1 | chr2A.!!$R1 | 671 |
15 | TraesCS1A01G005000 | chr2A | 625806705 | 625807378 | 673 | False | 1171 | 1171 | 98.071 | 349 | 1020 | 1 | chr2A.!!$F1 | 671 |
16 | TraesCS1A01G005000 | chr6A | 185344918 | 185345591 | 673 | True | 1171 | 1171 | 98.071 | 348 | 1020 | 1 | chr6A.!!$R1 | 672 |
17 | TraesCS1A01G005000 | chr7A | 83118098 | 83118770 | 672 | False | 1164 | 1164 | 97.920 | 349 | 1020 | 1 | chr7A.!!$F1 | 671 |
18 | TraesCS1A01G005000 | chr5A | 578804231 | 578804903 | 672 | True | 1164 | 1164 | 97.920 | 349 | 1020 | 1 | chr5A.!!$R1 | 671 |
19 | TraesCS1A01G005000 | chr3A | 503079541 | 503080213 | 672 | False | 1164 | 1164 | 97.920 | 349 | 1020 | 1 | chr3A.!!$F1 | 671 |
AutoCloner calculated primer pairsThese primer pairs were selected by Autocloner to minimize primer penalty (calculated by Primer3), whilst remaining within the specified product range where possible. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
345 | 346 | 0.034337 | GCCTAATTATCCGGGCGTCA | 59.966 | 55.000 | 0.00 | 0.0 | 35.08 | 4.35 | F |
346 | 347 | 1.792006 | CCTAATTATCCGGGCGTCAC | 58.208 | 55.000 | 0.00 | 0.0 | 0.00 | 3.67 | F |
1584 | 1587 | 1.754621 | TCTCAGCGGCGAGATTCCT | 60.755 | 57.895 | 12.98 | 0.0 | 37.12 | 3.36 | F |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability | Orientation |
---|---|---|---|---|---|---|---|---|---|---|
1399 | 1401 | 0.109532 | TTCGTTGACAAGCCCATCCA | 59.890 | 50.000 | 0.00 | 0.0 | 0.00 | 3.41 | R |
1772 | 1775 | 1.067821 | TCCCGTTGAATTGGTTGTTGC | 59.932 | 47.619 | 0.00 | 0.0 | 0.00 | 4.17 | R |
3251 | 3259 | 0.662619 | CGCTGAAAGGCACAGAACAA | 59.337 | 50.000 | 9.76 | 0.0 | 37.54 | 2.83 | R |
All possible primersListed here are all possible primers based on the multiple sequence alignment and SNPs generated previously. A lower penalty score indicates a better primer. If the AutoCloner primers did not work during PCR or sequencing, these could be used as alternatives. |
---|
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
22 | 23 | 5.782677 | AACACAATATACCCTACCACCAA | 57.217 | 39.130 | 0.00 | 0.00 | 0.00 | 3.67 |
23 | 24 | 5.782677 | ACACAATATACCCTACCACCAAA | 57.217 | 39.130 | 0.00 | 0.00 | 0.00 | 3.28 |
24 | 25 | 6.142259 | ACACAATATACCCTACCACCAAAA | 57.858 | 37.500 | 0.00 | 0.00 | 0.00 | 2.44 |
25 | 26 | 6.553857 | ACACAATATACCCTACCACCAAAAA | 58.446 | 36.000 | 0.00 | 0.00 | 0.00 | 1.94 |
26 | 27 | 6.434965 | ACACAATATACCCTACCACCAAAAAC | 59.565 | 38.462 | 0.00 | 0.00 | 0.00 | 2.43 |
27 | 28 | 6.661805 | CACAATATACCCTACCACCAAAAACT | 59.338 | 38.462 | 0.00 | 0.00 | 0.00 | 2.66 |
28 | 29 | 7.830201 | CACAATATACCCTACCACCAAAAACTA | 59.170 | 37.037 | 0.00 | 0.00 | 0.00 | 2.24 |
29 | 30 | 8.050930 | ACAATATACCCTACCACCAAAAACTAG | 58.949 | 37.037 | 0.00 | 0.00 | 0.00 | 2.57 |
30 | 31 | 7.760400 | ATATACCCTACCACCAAAAACTAGT | 57.240 | 36.000 | 0.00 | 0.00 | 0.00 | 2.57 |
31 | 32 | 4.801521 | ACCCTACCACCAAAAACTAGTT | 57.198 | 40.909 | 1.12 | 1.12 | 0.00 | 2.24 |
32 | 33 | 5.133383 | ACCCTACCACCAAAAACTAGTTT | 57.867 | 39.130 | 15.22 | 15.22 | 0.00 | 2.66 |
33 | 34 | 4.891168 | ACCCTACCACCAAAAACTAGTTTG | 59.109 | 41.667 | 21.22 | 10.68 | 38.07 | 2.93 |
50 | 51 | 9.762381 | AACTAGTTTGGGGTAATTATCATTTCA | 57.238 | 29.630 | 1.12 | 0.00 | 0.00 | 2.69 |
51 | 52 | 9.936329 | ACTAGTTTGGGGTAATTATCATTTCAT | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
99 | 100 | 9.923143 | AAAGGTTAGTAAATAATGTTTTCAGCC | 57.077 | 29.630 | 0.00 | 0.00 | 0.00 | 4.85 |
100 | 101 | 8.644374 | AGGTTAGTAAATAATGTTTTCAGCCA | 57.356 | 30.769 | 0.00 | 0.00 | 0.00 | 4.75 |
101 | 102 | 8.520351 | AGGTTAGTAAATAATGTTTTCAGCCAC | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 5.01 |
102 | 103 | 8.520351 | GGTTAGTAAATAATGTTTTCAGCCACT | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 4.00 |
103 | 104 | 9.341899 | GTTAGTAAATAATGTTTTCAGCCACTG | 57.658 | 33.333 | 0.00 | 0.00 | 0.00 | 3.66 |
104 | 105 | 7.524717 | AGTAAATAATGTTTTCAGCCACTGT | 57.475 | 32.000 | 0.00 | 0.00 | 32.61 | 3.55 |
105 | 106 | 7.951591 | AGTAAATAATGTTTTCAGCCACTGTT | 58.048 | 30.769 | 0.00 | 0.00 | 32.61 | 3.16 |
106 | 107 | 8.421002 | AGTAAATAATGTTTTCAGCCACTGTTT | 58.579 | 29.630 | 0.00 | 0.00 | 32.61 | 2.83 |
107 | 108 | 7.481275 | AAATAATGTTTTCAGCCACTGTTTG | 57.519 | 32.000 | 0.00 | 0.00 | 32.61 | 2.93 |
108 | 109 | 4.734398 | AATGTTTTCAGCCACTGTTTGA | 57.266 | 36.364 | 0.00 | 0.00 | 32.61 | 2.69 |
109 | 110 | 3.781079 | TGTTTTCAGCCACTGTTTGAG | 57.219 | 42.857 | 0.00 | 0.00 | 32.61 | 3.02 |
110 | 111 | 2.426738 | TGTTTTCAGCCACTGTTTGAGG | 59.573 | 45.455 | 0.00 | 0.00 | 32.61 | 3.86 |
111 | 112 | 2.427095 | GTTTTCAGCCACTGTTTGAGGT | 59.573 | 45.455 | 0.00 | 0.00 | 32.61 | 3.85 |
112 | 113 | 2.435372 | TTCAGCCACTGTTTGAGGTT | 57.565 | 45.000 | 0.00 | 0.00 | 32.61 | 3.50 |
113 | 114 | 1.679139 | TCAGCCACTGTTTGAGGTTG | 58.321 | 50.000 | 0.00 | 0.00 | 38.55 | 3.77 |
114 | 115 | 1.064758 | TCAGCCACTGTTTGAGGTTGT | 60.065 | 47.619 | 0.00 | 0.00 | 38.40 | 3.32 |
115 | 116 | 1.750778 | CAGCCACTGTTTGAGGTTGTT | 59.249 | 47.619 | 0.00 | 0.00 | 34.12 | 2.83 |
116 | 117 | 2.166254 | CAGCCACTGTTTGAGGTTGTTT | 59.834 | 45.455 | 0.00 | 0.00 | 34.12 | 2.83 |
117 | 118 | 3.380004 | CAGCCACTGTTTGAGGTTGTTTA | 59.620 | 43.478 | 0.00 | 0.00 | 34.12 | 2.01 |
118 | 119 | 4.020543 | AGCCACTGTTTGAGGTTGTTTAA | 58.979 | 39.130 | 0.00 | 0.00 | 0.00 | 1.52 |
119 | 120 | 4.097892 | AGCCACTGTTTGAGGTTGTTTAAG | 59.902 | 41.667 | 0.00 | 0.00 | 0.00 | 1.85 |
120 | 121 | 4.142249 | GCCACTGTTTGAGGTTGTTTAAGT | 60.142 | 41.667 | 0.00 | 0.00 | 0.00 | 2.24 |
121 | 122 | 5.578776 | CCACTGTTTGAGGTTGTTTAAGTC | 58.421 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
122 | 123 | 5.124776 | CCACTGTTTGAGGTTGTTTAAGTCA | 59.875 | 40.000 | 0.00 | 0.00 | 0.00 | 3.41 |
123 | 124 | 6.027749 | CACTGTTTGAGGTTGTTTAAGTCAC | 58.972 | 40.000 | 0.00 | 0.00 | 0.00 | 3.67 |
124 | 125 | 5.944007 | ACTGTTTGAGGTTGTTTAAGTCACT | 59.056 | 36.000 | 0.00 | 0.00 | 0.00 | 3.41 |
125 | 126 | 6.433093 | ACTGTTTGAGGTTGTTTAAGTCACTT | 59.567 | 34.615 | 0.00 | 0.00 | 0.00 | 3.16 |
126 | 127 | 7.608761 | ACTGTTTGAGGTTGTTTAAGTCACTTA | 59.391 | 33.333 | 0.00 | 0.00 | 0.00 | 2.24 |
127 | 128 | 8.514330 | TGTTTGAGGTTGTTTAAGTCACTTAT | 57.486 | 30.769 | 0.00 | 0.00 | 0.00 | 1.73 |
128 | 129 | 8.617809 | TGTTTGAGGTTGTTTAAGTCACTTATC | 58.382 | 33.333 | 0.00 | 0.00 | 0.00 | 1.75 |
129 | 130 | 8.617809 | GTTTGAGGTTGTTTAAGTCACTTATCA | 58.382 | 33.333 | 0.00 | 0.00 | 0.00 | 2.15 |
130 | 131 | 8.740123 | TTGAGGTTGTTTAAGTCACTTATCAA | 57.260 | 30.769 | 0.00 | 5.06 | 0.00 | 2.57 |
131 | 132 | 8.740123 | TGAGGTTGTTTAAGTCACTTATCAAA | 57.260 | 30.769 | 13.69 | 0.00 | 29.67 | 2.69 |
132 | 133 | 9.349713 | TGAGGTTGTTTAAGTCACTTATCAAAT | 57.650 | 29.630 | 13.69 | 8.42 | 29.67 | 2.32 |
170 | 171 | 9.679661 | TGTTTACAATTTTATCATAGCCTCTGA | 57.320 | 29.630 | 0.00 | 0.00 | 0.00 | 3.27 |
257 | 258 | 9.270640 | TGATTTTGATTTTGAATTTGAATCGGT | 57.729 | 25.926 | 0.00 | 0.00 | 33.55 | 4.69 |
260 | 261 | 9.928236 | TTTTGATTTTGAATTTGAATCGGTTTC | 57.072 | 25.926 | 0.00 | 0.00 | 33.55 | 2.78 |
261 | 262 | 7.332003 | TGATTTTGAATTTGAATCGGTTTCG | 57.668 | 32.000 | 0.00 | 0.00 | 37.13 | 3.46 |
270 | 271 | 4.157817 | TCGGTTTCGAGCTAACGC | 57.842 | 55.556 | 0.00 | 0.00 | 40.88 | 4.84 |
271 | 272 | 1.798725 | TCGGTTTCGAGCTAACGCG | 60.799 | 57.895 | 3.53 | 3.53 | 40.88 | 6.01 |
272 | 273 | 1.798725 | CGGTTTCGAGCTAACGCGA | 60.799 | 57.895 | 15.93 | 0.00 | 46.70 | 5.87 |
278 | 279 | 2.380102 | TCGAGCTAACGCGAGATTAC | 57.620 | 50.000 | 15.93 | 0.00 | 43.42 | 1.89 |
279 | 280 | 1.938577 | TCGAGCTAACGCGAGATTACT | 59.061 | 47.619 | 15.93 | 1.35 | 43.42 | 2.24 |
280 | 281 | 3.126073 | TCGAGCTAACGCGAGATTACTA | 58.874 | 45.455 | 15.93 | 0.00 | 43.42 | 1.82 |
281 | 282 | 3.557185 | TCGAGCTAACGCGAGATTACTAA | 59.443 | 43.478 | 15.93 | 0.00 | 43.42 | 2.24 |
282 | 283 | 3.658533 | CGAGCTAACGCGAGATTACTAAC | 59.341 | 47.826 | 15.93 | 0.00 | 42.18 | 2.34 |
283 | 284 | 4.595116 | GAGCTAACGCGAGATTACTAACA | 58.405 | 43.478 | 15.93 | 0.00 | 42.32 | 2.41 |
284 | 285 | 4.599047 | AGCTAACGCGAGATTACTAACAG | 58.401 | 43.478 | 15.93 | 0.00 | 42.32 | 3.16 |
285 | 286 | 4.096081 | AGCTAACGCGAGATTACTAACAGT | 59.904 | 41.667 | 15.93 | 0.00 | 42.32 | 3.55 |
286 | 287 | 5.295292 | AGCTAACGCGAGATTACTAACAGTA | 59.705 | 40.000 | 15.93 | 0.00 | 42.32 | 2.74 |
287 | 288 | 5.967674 | GCTAACGCGAGATTACTAACAGTAA | 59.032 | 40.000 | 15.93 | 1.51 | 43.95 | 2.24 |
288 | 289 | 7.468357 | AGCTAACGCGAGATTACTAACAGTAAT | 60.468 | 37.037 | 15.93 | 10.55 | 45.75 | 1.89 |
300 | 301 | 6.764877 | ACTAACAGTAATCAAAGTGACGTG | 57.235 | 37.500 | 0.00 | 0.00 | 0.00 | 4.49 |
301 | 302 | 5.694910 | ACTAACAGTAATCAAAGTGACGTGG | 59.305 | 40.000 | 0.00 | 0.00 | 0.00 | 4.94 |
302 | 303 | 2.806244 | ACAGTAATCAAAGTGACGTGGC | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 5.01 |
303 | 304 | 2.805671 | CAGTAATCAAAGTGACGTGGCA | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 4.92 |
304 | 305 | 3.436704 | CAGTAATCAAAGTGACGTGGCAT | 59.563 | 43.478 | 0.00 | 0.00 | 0.00 | 4.40 |
305 | 306 | 3.684788 | AGTAATCAAAGTGACGTGGCATC | 59.315 | 43.478 | 0.00 | 0.00 | 0.00 | 3.91 |
306 | 307 | 1.078709 | ATCAAAGTGACGTGGCATCG | 58.921 | 50.000 | 0.00 | 7.71 | 0.00 | 3.84 |
307 | 308 | 0.249699 | TCAAAGTGACGTGGCATCGT | 60.250 | 50.000 | 13.44 | 13.44 | 46.88 | 3.73 |
308 | 309 | 0.586319 | CAAAGTGACGTGGCATCGTT | 59.414 | 50.000 | 14.43 | 0.00 | 44.21 | 3.85 |
309 | 310 | 1.795872 | CAAAGTGACGTGGCATCGTTA | 59.204 | 47.619 | 14.43 | 9.12 | 44.21 | 3.18 |
310 | 311 | 2.157834 | AAGTGACGTGGCATCGTTAA | 57.842 | 45.000 | 14.43 | 5.94 | 44.21 | 2.01 |
311 | 312 | 1.425412 | AGTGACGTGGCATCGTTAAC | 58.575 | 50.000 | 14.43 | 14.72 | 44.21 | 2.01 |
312 | 313 | 0.092351 | GTGACGTGGCATCGTTAACG | 59.908 | 55.000 | 21.85 | 21.85 | 44.21 | 3.18 |
313 | 314 | 4.659480 | ACGTGGCATCGTTAACGT | 57.341 | 50.000 | 25.98 | 11.94 | 43.87 | 3.99 |
314 | 315 | 2.146954 | ACGTGGCATCGTTAACGTG | 58.853 | 52.632 | 25.98 | 22.24 | 46.58 | 4.49 |
315 | 316 | 1.286354 | ACGTGGCATCGTTAACGTGG | 61.286 | 55.000 | 25.98 | 19.51 | 46.58 | 4.94 |
316 | 317 | 1.791662 | GTGGCATCGTTAACGTGGG | 59.208 | 57.895 | 25.98 | 17.27 | 40.80 | 4.61 |
317 | 318 | 0.671163 | GTGGCATCGTTAACGTGGGA | 60.671 | 55.000 | 25.98 | 8.70 | 40.80 | 4.37 |
318 | 319 | 0.250793 | TGGCATCGTTAACGTGGGAT | 59.749 | 50.000 | 25.98 | 10.69 | 40.80 | 3.85 |
319 | 320 | 1.339247 | TGGCATCGTTAACGTGGGATT | 60.339 | 47.619 | 25.98 | 4.55 | 40.80 | 3.01 |
320 | 321 | 2.093606 | TGGCATCGTTAACGTGGGATTA | 60.094 | 45.455 | 25.98 | 6.82 | 40.80 | 1.75 |
321 | 322 | 2.286025 | GGCATCGTTAACGTGGGATTAC | 59.714 | 50.000 | 25.98 | 7.95 | 40.80 | 1.89 |
322 | 323 | 3.192466 | GCATCGTTAACGTGGGATTACT | 58.808 | 45.455 | 25.98 | 0.57 | 40.80 | 2.24 |
323 | 324 | 3.000925 | GCATCGTTAACGTGGGATTACTG | 59.999 | 47.826 | 25.98 | 11.92 | 40.80 | 2.74 |
324 | 325 | 3.940209 | TCGTTAACGTGGGATTACTGT | 57.060 | 42.857 | 25.98 | 0.00 | 40.80 | 3.55 |
325 | 326 | 5.342433 | CATCGTTAACGTGGGATTACTGTA | 58.658 | 41.667 | 25.98 | 3.87 | 40.80 | 2.74 |
326 | 327 | 4.985413 | TCGTTAACGTGGGATTACTGTAG | 58.015 | 43.478 | 25.98 | 0.00 | 40.80 | 2.74 |
327 | 328 | 3.549070 | CGTTAACGTGGGATTACTGTAGC | 59.451 | 47.826 | 19.75 | 0.00 | 34.11 | 3.58 |
328 | 329 | 2.685850 | AACGTGGGATTACTGTAGCC | 57.314 | 50.000 | 0.00 | 1.45 | 0.00 | 3.93 |
329 | 330 | 1.861982 | ACGTGGGATTACTGTAGCCT | 58.138 | 50.000 | 0.00 | 0.00 | 0.00 | 4.58 |
330 | 331 | 3.022557 | ACGTGGGATTACTGTAGCCTA | 57.977 | 47.619 | 0.00 | 1.19 | 0.00 | 3.93 |
331 | 332 | 3.368248 | ACGTGGGATTACTGTAGCCTAA | 58.632 | 45.455 | 0.00 | 0.00 | 0.00 | 2.69 |
332 | 333 | 3.965347 | ACGTGGGATTACTGTAGCCTAAT | 59.035 | 43.478 | 0.00 | 0.00 | 0.00 | 1.73 |
333 | 334 | 4.407945 | ACGTGGGATTACTGTAGCCTAATT | 59.592 | 41.667 | 0.00 | 0.00 | 0.00 | 1.40 |
334 | 335 | 5.599656 | ACGTGGGATTACTGTAGCCTAATTA | 59.400 | 40.000 | 0.00 | 0.00 | 0.00 | 1.40 |
335 | 336 | 6.269307 | ACGTGGGATTACTGTAGCCTAATTAT | 59.731 | 38.462 | 0.00 | 0.00 | 0.00 | 1.28 |
336 | 337 | 6.812160 | CGTGGGATTACTGTAGCCTAATTATC | 59.188 | 42.308 | 8.19 | 0.00 | 0.00 | 1.75 |
337 | 338 | 7.104290 | GTGGGATTACTGTAGCCTAATTATCC | 58.896 | 42.308 | 8.19 | 5.83 | 0.00 | 2.59 |
338 | 339 | 6.070995 | TGGGATTACTGTAGCCTAATTATCCG | 60.071 | 42.308 | 8.19 | 0.00 | 31.87 | 4.18 |
339 | 340 | 6.338937 | GGATTACTGTAGCCTAATTATCCGG | 58.661 | 44.000 | 0.00 | 0.00 | 0.00 | 5.14 |
340 | 341 | 5.733620 | TTACTGTAGCCTAATTATCCGGG | 57.266 | 43.478 | 0.00 | 0.00 | 0.00 | 5.73 |
341 | 342 | 2.302157 | ACTGTAGCCTAATTATCCGGGC | 59.698 | 50.000 | 0.00 | 5.52 | 44.38 | 6.13 |
344 | 345 | 2.836944 | GCCTAATTATCCGGGCGTC | 58.163 | 57.895 | 0.00 | 0.00 | 35.08 | 5.19 |
345 | 346 | 0.034337 | GCCTAATTATCCGGGCGTCA | 59.966 | 55.000 | 0.00 | 0.00 | 35.08 | 4.35 |
346 | 347 | 1.792006 | CCTAATTATCCGGGCGTCAC | 58.208 | 55.000 | 0.00 | 0.00 | 0.00 | 3.67 |
732 | 734 | 6.018913 | GCGAATAGCTCAAGGATCATCATATG | 60.019 | 42.308 | 0.00 | 0.00 | 44.04 | 1.78 |
815 | 817 | 5.538053 | GGAGAACCATCACTATCTCATCTGA | 59.462 | 44.000 | 4.27 | 0.00 | 40.02 | 3.27 |
1015 | 1017 | 4.022464 | TCTGCGATGTTTCAAAAACGTT | 57.978 | 36.364 | 0.00 | 0.00 | 0.00 | 3.99 |
1023 | 1025 | 4.773510 | TGTTTCAAAAACGTTTTGGCAAC | 58.226 | 34.783 | 26.76 | 26.76 | 0.00 | 4.17 |
1029 | 1031 | 4.657436 | AAAACGTTTTGGCAACCTGATA | 57.343 | 36.364 | 24.68 | 0.00 | 0.00 | 2.15 |
1056 | 1058 | 8.189119 | ACCTCAAATATTTAGCCTTGTTTCAA | 57.811 | 30.769 | 0.00 | 0.00 | 0.00 | 2.69 |
1113 | 1115 | 3.546616 | GCAAGTTGCAAAGCATCCAAAAC | 60.547 | 43.478 | 22.90 | 0.00 | 44.26 | 2.43 |
1245 | 1247 | 6.186957 | ACCTGCAAATATATGTTCAAGTGGA | 58.813 | 36.000 | 0.00 | 0.00 | 0.00 | 4.02 |
1262 | 1264 | 3.131400 | AGTGGAGGACTAAAATCTCTCGC | 59.869 | 47.826 | 0.00 | 0.00 | 30.86 | 5.03 |
1264 | 1266 | 4.338682 | GTGGAGGACTAAAATCTCTCGCTA | 59.661 | 45.833 | 0.00 | 0.00 | 0.00 | 4.26 |
1290 | 1292 | 4.584325 | GCTTCTAATATGTTCAATGGCCCA | 59.416 | 41.667 | 0.00 | 0.00 | 0.00 | 5.36 |
1414 | 1416 | 3.202818 | ACTCATATGGATGGGCTTGTCAA | 59.797 | 43.478 | 2.13 | 0.00 | 36.99 | 3.18 |
1445 | 1447 | 2.699321 | TCTCTGGGCAGATCTCATCAAG | 59.301 | 50.000 | 0.00 | 0.00 | 36.76 | 3.02 |
1584 | 1587 | 1.754621 | TCTCAGCGGCGAGATTCCT | 60.755 | 57.895 | 12.98 | 0.00 | 37.12 | 3.36 |
1681 | 1684 | 9.534565 | CTACACAGATAGAAAAGCTAAGCAATA | 57.465 | 33.333 | 0.00 | 0.00 | 31.66 | 1.90 |
1771 | 1774 | 5.715070 | AGAAACTACAGTCCTTGAAGATCG | 58.285 | 41.667 | 0.00 | 0.00 | 0.00 | 3.69 |
1772 | 1775 | 4.457834 | AACTACAGTCCTTGAAGATCGG | 57.542 | 45.455 | 0.00 | 0.00 | 0.00 | 4.18 |
1780 | 1783 | 1.200020 | CCTTGAAGATCGGCAACAACC | 59.800 | 52.381 | 0.00 | 0.00 | 0.00 | 3.77 |
1782 | 1785 | 1.974265 | TGAAGATCGGCAACAACCAA | 58.026 | 45.000 | 0.00 | 0.00 | 0.00 | 3.67 |
1788 | 1791 | 2.500509 | TCGGCAACAACCAATTCAAC | 57.499 | 45.000 | 0.00 | 0.00 | 0.00 | 3.18 |
1902 | 1905 | 2.089980 | CTTGGGAAGTTGGAGATGCTG | 58.910 | 52.381 | 0.00 | 0.00 | 0.00 | 4.41 |
1907 | 1910 | 2.948315 | GGAAGTTGGAGATGCTGGAATC | 59.052 | 50.000 | 0.00 | 0.00 | 0.00 | 2.52 |
1938 | 1941 | 9.685276 | AATTTATCACATAATCAGTTCAGTGGA | 57.315 | 29.630 | 0.00 | 0.00 | 0.00 | 4.02 |
1961 | 1964 | 2.168936 | GCATTCCATCCTCCATTGCAAA | 59.831 | 45.455 | 1.71 | 0.00 | 0.00 | 3.68 |
1966 | 1969 | 2.546778 | CATCCTCCATTGCAAACATGC | 58.453 | 47.619 | 1.71 | 0.00 | 0.00 | 4.06 |
2076 | 2079 | 5.321927 | TGGTTTCTTCCCAATAAAGGTCTC | 58.678 | 41.667 | 0.00 | 0.00 | 0.00 | 3.36 |
2095 | 2098 | 1.203187 | TCTGTGGTAACCTCTCTGGCT | 60.203 | 52.381 | 0.00 | 0.00 | 40.22 | 4.75 |
2161 | 2164 | 5.221441 | GGGAAGATACTTGGTTTGCTTTTGT | 60.221 | 40.000 | 0.00 | 0.00 | 0.00 | 2.83 |
2163 | 2166 | 5.453567 | AGATACTTGGTTTGCTTTTGTCC | 57.546 | 39.130 | 0.00 | 0.00 | 0.00 | 4.02 |
2284 | 2287 | 3.198853 | AGCAAGGGACCTATTCTCTGTTC | 59.801 | 47.826 | 0.00 | 0.00 | 34.05 | 3.18 |
2578 | 2584 | 4.502016 | TCTCGTCTACGACTACATTCAGT | 58.498 | 43.478 | 0.14 | 0.00 | 44.22 | 3.41 |
2619 | 2625 | 7.148340 | GGAATATTGGAAAATGAGGAGCTATCG | 60.148 | 40.741 | 0.00 | 0.00 | 0.00 | 2.92 |
3039 | 3047 | 0.396139 | GATGGGCAAGCATCCAAGGA | 60.396 | 55.000 | 0.00 | 0.00 | 36.54 | 3.36 |
3159 | 3167 | 4.550076 | AACTTAGCTCTGCTCATCAAGT | 57.450 | 40.909 | 0.00 | 0.00 | 40.44 | 3.16 |
3214 | 3222 | 2.036256 | GCCAACCATGCAGGAGGT | 59.964 | 61.111 | 0.00 | 0.31 | 41.22 | 3.85 |
3251 | 3259 | 2.428890 | CCAGCGACCATCTTCTAGTTCT | 59.571 | 50.000 | 0.00 | 0.00 | 0.00 | 3.01 |
3255 | 3263 | 4.021016 | AGCGACCATCTTCTAGTTCTTGTT | 60.021 | 41.667 | 0.00 | 0.00 | 0.00 | 2.83 |
3257 | 3265 | 5.715070 | CGACCATCTTCTAGTTCTTGTTCT | 58.285 | 41.667 | 0.00 | 0.00 | 0.00 | 3.01 |
3272 | 3280 | 2.606961 | TTCTGTGCCTTTCAGCGCG | 61.607 | 57.895 | 0.00 | 0.00 | 46.35 | 6.86 |
3277 | 3285 | 1.745115 | TGCCTTTCAGCGCGCTTAT | 60.745 | 52.632 | 34.58 | 8.62 | 34.65 | 1.73 |
3337 | 3350 | 2.234908 | CCTAGTGAGAAACCAGGGTCTG | 59.765 | 54.545 | 0.00 | 0.00 | 0.00 | 3.51 |
3578 | 3608 | 5.063944 | CAGTCCCGTGTTCTTGATATTTCTG | 59.936 | 44.000 | 0.00 | 0.00 | 0.00 | 3.02 |
Position | MSA Position | Penalty | Sequence | TM | GC | Self any TH | Self end TH | Hairpin | End Stability |
---|---|---|---|---|---|---|---|---|---|
0 | 1 | 5.782677 | TTGGTGGTAGGGTATATTGTGTT | 57.217 | 39.130 | 0.00 | 0.00 | 0.00 | 3.32 |
1 | 2 | 5.782677 | TTTGGTGGTAGGGTATATTGTGT | 57.217 | 39.130 | 0.00 | 0.00 | 0.00 | 3.72 |
2 | 3 | 6.661805 | AGTTTTTGGTGGTAGGGTATATTGTG | 59.338 | 38.462 | 0.00 | 0.00 | 0.00 | 3.33 |
3 | 4 | 6.796648 | AGTTTTTGGTGGTAGGGTATATTGT | 58.203 | 36.000 | 0.00 | 0.00 | 0.00 | 2.71 |
4 | 5 | 8.050930 | ACTAGTTTTTGGTGGTAGGGTATATTG | 58.949 | 37.037 | 0.00 | 0.00 | 0.00 | 1.90 |
5 | 6 | 8.166479 | ACTAGTTTTTGGTGGTAGGGTATATT | 57.834 | 34.615 | 0.00 | 0.00 | 0.00 | 1.28 |
6 | 7 | 7.760400 | ACTAGTTTTTGGTGGTAGGGTATAT | 57.240 | 36.000 | 0.00 | 0.00 | 0.00 | 0.86 |
7 | 8 | 7.572546 | AACTAGTTTTTGGTGGTAGGGTATA | 57.427 | 36.000 | 1.12 | 0.00 | 0.00 | 1.47 |
8 | 9 | 6.458630 | AACTAGTTTTTGGTGGTAGGGTAT | 57.541 | 37.500 | 1.12 | 0.00 | 0.00 | 2.73 |
9 | 10 | 5.910355 | AACTAGTTTTTGGTGGTAGGGTA | 57.090 | 39.130 | 1.12 | 0.00 | 0.00 | 3.69 |
10 | 11 | 4.801521 | AACTAGTTTTTGGTGGTAGGGT | 57.198 | 40.909 | 1.12 | 0.00 | 0.00 | 4.34 |
11 | 12 | 5.447624 | CAAACTAGTTTTTGGTGGTAGGG | 57.552 | 43.478 | 18.25 | 0.00 | 33.53 | 3.53 |
24 | 25 | 9.762381 | TGAAATGATAATTACCCCAAACTAGTT | 57.238 | 29.630 | 1.12 | 1.12 | 0.00 | 2.24 |
25 | 26 | 9.936329 | ATGAAATGATAATTACCCCAAACTAGT | 57.064 | 29.630 | 0.00 | 0.00 | 0.00 | 2.57 |
73 | 74 | 9.923143 | GGCTGAAAACATTATTTACTAACCTTT | 57.077 | 29.630 | 0.00 | 0.00 | 0.00 | 3.11 |
74 | 75 | 9.084533 | TGGCTGAAAACATTATTTACTAACCTT | 57.915 | 29.630 | 0.00 | 0.00 | 0.00 | 3.50 |
75 | 76 | 8.520351 | GTGGCTGAAAACATTATTTACTAACCT | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 3.50 |
76 | 77 | 8.520351 | AGTGGCTGAAAACATTATTTACTAACC | 58.480 | 33.333 | 0.00 | 0.00 | 0.00 | 2.85 |
77 | 78 | 9.341899 | CAGTGGCTGAAAACATTATTTACTAAC | 57.658 | 33.333 | 0.00 | 0.00 | 32.44 | 2.34 |
78 | 79 | 9.073475 | ACAGTGGCTGAAAACATTATTTACTAA | 57.927 | 29.630 | 2.91 | 0.00 | 35.18 | 2.24 |
79 | 80 | 8.630054 | ACAGTGGCTGAAAACATTATTTACTA | 57.370 | 30.769 | 2.91 | 0.00 | 35.18 | 1.82 |
80 | 81 | 7.524717 | ACAGTGGCTGAAAACATTATTTACT | 57.475 | 32.000 | 2.91 | 0.00 | 35.18 | 2.24 |
81 | 82 | 8.487176 | CAAACAGTGGCTGAAAACATTATTTAC | 58.513 | 33.333 | 2.91 | 0.00 | 35.18 | 2.01 |
82 | 83 | 8.417106 | TCAAACAGTGGCTGAAAACATTATTTA | 58.583 | 29.630 | 2.91 | 0.00 | 35.18 | 1.40 |
83 | 84 | 7.271511 | TCAAACAGTGGCTGAAAACATTATTT | 58.728 | 30.769 | 2.91 | 0.00 | 35.18 | 1.40 |
84 | 85 | 6.815089 | TCAAACAGTGGCTGAAAACATTATT | 58.185 | 32.000 | 2.91 | 0.00 | 35.18 | 1.40 |
85 | 86 | 6.403866 | TCAAACAGTGGCTGAAAACATTAT | 57.596 | 33.333 | 2.91 | 0.00 | 35.18 | 1.28 |
86 | 87 | 5.221224 | CCTCAAACAGTGGCTGAAAACATTA | 60.221 | 40.000 | 2.91 | 0.00 | 35.18 | 1.90 |
87 | 88 | 4.441913 | CCTCAAACAGTGGCTGAAAACATT | 60.442 | 41.667 | 2.91 | 0.00 | 35.18 | 2.71 |
88 | 89 | 3.068590 | CCTCAAACAGTGGCTGAAAACAT | 59.931 | 43.478 | 2.91 | 0.00 | 35.18 | 2.71 |
89 | 90 | 2.426738 | CCTCAAACAGTGGCTGAAAACA | 59.573 | 45.455 | 2.91 | 0.00 | 35.18 | 2.83 |
90 | 91 | 2.427095 | ACCTCAAACAGTGGCTGAAAAC | 59.573 | 45.455 | 2.91 | 0.00 | 35.18 | 2.43 |
91 | 92 | 2.733956 | ACCTCAAACAGTGGCTGAAAA | 58.266 | 42.857 | 2.91 | 0.00 | 35.18 | 2.29 |
92 | 93 | 2.426738 | CAACCTCAAACAGTGGCTGAAA | 59.573 | 45.455 | 2.91 | 0.00 | 35.18 | 2.69 |
93 | 94 | 2.023673 | CAACCTCAAACAGTGGCTGAA | 58.976 | 47.619 | 2.91 | 0.00 | 35.18 | 3.02 |
94 | 95 | 1.064758 | ACAACCTCAAACAGTGGCTGA | 60.065 | 47.619 | 2.91 | 0.00 | 35.18 | 4.26 |
95 | 96 | 1.392589 | ACAACCTCAAACAGTGGCTG | 58.607 | 50.000 | 0.00 | 0.00 | 37.52 | 4.85 |
96 | 97 | 2.143876 | AACAACCTCAAACAGTGGCT | 57.856 | 45.000 | 0.00 | 0.00 | 34.14 | 4.75 |
97 | 98 | 2.959507 | AAACAACCTCAAACAGTGGC | 57.040 | 45.000 | 0.00 | 0.00 | 34.14 | 5.01 |
98 | 99 | 5.124776 | TGACTTAAACAACCTCAAACAGTGG | 59.875 | 40.000 | 0.00 | 0.00 | 36.93 | 4.00 |
99 | 100 | 6.027749 | GTGACTTAAACAACCTCAAACAGTG | 58.972 | 40.000 | 0.00 | 0.00 | 0.00 | 3.66 |
100 | 101 | 5.944007 | AGTGACTTAAACAACCTCAAACAGT | 59.056 | 36.000 | 0.00 | 0.00 | 0.00 | 3.55 |
101 | 102 | 6.436843 | AGTGACTTAAACAACCTCAAACAG | 57.563 | 37.500 | 0.00 | 0.00 | 0.00 | 3.16 |
102 | 103 | 6.827586 | AAGTGACTTAAACAACCTCAAACA | 57.172 | 33.333 | 0.00 | 0.00 | 0.00 | 2.83 |
103 | 104 | 8.617809 | TGATAAGTGACTTAAACAACCTCAAAC | 58.382 | 33.333 | 9.35 | 0.00 | 29.35 | 2.93 |
104 | 105 | 8.740123 | TGATAAGTGACTTAAACAACCTCAAA | 57.260 | 30.769 | 9.35 | 0.00 | 29.35 | 2.69 |
105 | 106 | 8.740123 | TTGATAAGTGACTTAAACAACCTCAA | 57.260 | 30.769 | 9.35 | 9.64 | 29.35 | 3.02 |
106 | 107 | 8.740123 | TTTGATAAGTGACTTAAACAACCTCA | 57.260 | 30.769 | 19.76 | 11.21 | 31.72 | 3.86 |
144 | 145 | 9.679661 | TCAGAGGCTATGATAAAATTGTAAACA | 57.320 | 29.630 | 7.93 | 0.00 | 0.00 | 2.83 |
231 | 232 | 9.270640 | ACCGATTCAAATTCAAAATCAAAATCA | 57.729 | 25.926 | 7.67 | 0.00 | 31.25 | 2.57 |
234 | 235 | 9.928236 | GAAACCGATTCAAATTCAAAATCAAAA | 57.072 | 25.926 | 7.67 | 0.00 | 37.99 | 2.44 |
235 | 236 | 8.272176 | CGAAACCGATTCAAATTCAAAATCAAA | 58.728 | 29.630 | 7.67 | 0.00 | 37.96 | 2.69 |
236 | 237 | 7.649705 | TCGAAACCGATTCAAATTCAAAATCAA | 59.350 | 29.630 | 7.67 | 0.00 | 37.96 | 2.57 |
237 | 238 | 7.142021 | TCGAAACCGATTCAAATTCAAAATCA | 58.858 | 30.769 | 7.67 | 0.00 | 37.96 | 2.57 |
238 | 239 | 7.561237 | TCGAAACCGATTCAAATTCAAAATC | 57.439 | 32.000 | 0.00 | 0.00 | 37.96 | 2.17 |
239 | 240 | 6.089417 | GCTCGAAACCGATTCAAATTCAAAAT | 59.911 | 34.615 | 0.00 | 0.00 | 37.96 | 1.82 |
240 | 241 | 5.401079 | GCTCGAAACCGATTCAAATTCAAAA | 59.599 | 36.000 | 0.00 | 0.00 | 37.96 | 2.44 |
241 | 242 | 4.915085 | GCTCGAAACCGATTCAAATTCAAA | 59.085 | 37.500 | 0.00 | 0.00 | 37.96 | 2.69 |
242 | 243 | 4.215399 | AGCTCGAAACCGATTCAAATTCAA | 59.785 | 37.500 | 0.00 | 0.00 | 37.96 | 2.69 |
243 | 244 | 3.751175 | AGCTCGAAACCGATTCAAATTCA | 59.249 | 39.130 | 0.00 | 0.00 | 37.96 | 2.57 |
244 | 245 | 4.342352 | AGCTCGAAACCGATTCAAATTC | 57.658 | 40.909 | 0.00 | 0.00 | 37.96 | 2.17 |
245 | 246 | 5.628134 | GTTAGCTCGAAACCGATTCAAATT | 58.372 | 37.500 | 0.00 | 0.00 | 37.96 | 1.82 |
246 | 247 | 4.201685 | CGTTAGCTCGAAACCGATTCAAAT | 60.202 | 41.667 | 0.00 | 0.00 | 37.96 | 2.32 |
247 | 248 | 3.122278 | CGTTAGCTCGAAACCGATTCAAA | 59.878 | 43.478 | 0.00 | 0.00 | 37.96 | 2.69 |
248 | 249 | 2.664568 | CGTTAGCTCGAAACCGATTCAA | 59.335 | 45.455 | 0.00 | 0.00 | 37.96 | 2.69 |
249 | 250 | 2.256174 | CGTTAGCTCGAAACCGATTCA | 58.744 | 47.619 | 0.00 | 0.00 | 37.96 | 2.57 |
250 | 251 | 1.006287 | GCGTTAGCTCGAAACCGATTC | 60.006 | 52.381 | 0.00 | 0.00 | 41.01 | 2.52 |
251 | 252 | 0.997196 | GCGTTAGCTCGAAACCGATT | 59.003 | 50.000 | 0.00 | 0.00 | 41.01 | 3.34 |
252 | 253 | 1.138047 | CGCGTTAGCTCGAAACCGAT | 61.138 | 55.000 | 0.00 | 0.00 | 42.32 | 4.18 |
253 | 254 | 1.798725 | CGCGTTAGCTCGAAACCGA | 60.799 | 57.895 | 0.00 | 0.00 | 42.32 | 4.69 |
254 | 255 | 1.730593 | CTCGCGTTAGCTCGAAACCG | 61.731 | 60.000 | 5.77 | 0.00 | 42.32 | 4.44 |
255 | 256 | 0.455633 | TCTCGCGTTAGCTCGAAACC | 60.456 | 55.000 | 5.77 | 0.00 | 42.32 | 3.27 |
256 | 257 | 1.546834 | ATCTCGCGTTAGCTCGAAAC | 58.453 | 50.000 | 5.77 | 0.00 | 42.32 | 2.78 |
257 | 258 | 2.273370 | AATCTCGCGTTAGCTCGAAA | 57.727 | 45.000 | 5.77 | 0.00 | 42.32 | 3.46 |
258 | 259 | 2.353889 | AGTAATCTCGCGTTAGCTCGAA | 59.646 | 45.455 | 5.77 | 0.00 | 42.32 | 3.71 |
259 | 260 | 1.938577 | AGTAATCTCGCGTTAGCTCGA | 59.061 | 47.619 | 5.77 | 0.00 | 42.32 | 4.04 |
260 | 261 | 2.386501 | AGTAATCTCGCGTTAGCTCG | 57.613 | 50.000 | 5.77 | 0.00 | 42.32 | 5.03 |
261 | 262 | 4.595116 | TGTTAGTAATCTCGCGTTAGCTC | 58.405 | 43.478 | 5.77 | 0.00 | 42.32 | 4.09 |
262 | 263 | 4.096081 | ACTGTTAGTAATCTCGCGTTAGCT | 59.904 | 41.667 | 5.77 | 0.00 | 42.32 | 3.32 |
263 | 264 | 4.349501 | ACTGTTAGTAATCTCGCGTTAGC | 58.650 | 43.478 | 5.77 | 0.00 | 40.74 | 3.09 |
275 | 276 | 7.383029 | CCACGTCACTTTGATTACTGTTAGTAA | 59.617 | 37.037 | 4.12 | 4.12 | 43.95 | 2.24 |
276 | 277 | 6.864685 | CCACGTCACTTTGATTACTGTTAGTA | 59.135 | 38.462 | 0.00 | 0.00 | 0.00 | 1.82 |
277 | 278 | 5.694910 | CCACGTCACTTTGATTACTGTTAGT | 59.305 | 40.000 | 0.00 | 0.00 | 0.00 | 2.24 |
278 | 279 | 5.389516 | GCCACGTCACTTTGATTACTGTTAG | 60.390 | 44.000 | 0.00 | 0.00 | 0.00 | 2.34 |
279 | 280 | 4.449743 | GCCACGTCACTTTGATTACTGTTA | 59.550 | 41.667 | 0.00 | 0.00 | 0.00 | 2.41 |
280 | 281 | 3.250040 | GCCACGTCACTTTGATTACTGTT | 59.750 | 43.478 | 0.00 | 0.00 | 0.00 | 3.16 |
281 | 282 | 2.806244 | GCCACGTCACTTTGATTACTGT | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 3.55 |
282 | 283 | 2.805671 | TGCCACGTCACTTTGATTACTG | 59.194 | 45.455 | 0.00 | 0.00 | 0.00 | 2.74 |
283 | 284 | 3.120321 | TGCCACGTCACTTTGATTACT | 57.880 | 42.857 | 0.00 | 0.00 | 0.00 | 2.24 |
284 | 285 | 3.483574 | CGATGCCACGTCACTTTGATTAC | 60.484 | 47.826 | 0.00 | 0.00 | 0.00 | 1.89 |
285 | 286 | 2.670905 | CGATGCCACGTCACTTTGATTA | 59.329 | 45.455 | 0.00 | 0.00 | 0.00 | 1.75 |
286 | 287 | 1.464608 | CGATGCCACGTCACTTTGATT | 59.535 | 47.619 | 0.00 | 0.00 | 0.00 | 2.57 |
287 | 288 | 1.078709 | CGATGCCACGTCACTTTGAT | 58.921 | 50.000 | 0.00 | 0.00 | 0.00 | 2.57 |
288 | 289 | 0.249699 | ACGATGCCACGTCACTTTGA | 60.250 | 50.000 | 0.00 | 0.00 | 43.02 | 2.69 |
289 | 290 | 0.586319 | AACGATGCCACGTCACTTTG | 59.414 | 50.000 | 5.80 | 0.00 | 45.83 | 2.77 |
290 | 291 | 2.157834 | TAACGATGCCACGTCACTTT | 57.842 | 45.000 | 5.80 | 0.00 | 45.83 | 2.66 |
291 | 292 | 1.796459 | GTTAACGATGCCACGTCACTT | 59.204 | 47.619 | 5.80 | 0.00 | 45.83 | 3.16 |
292 | 293 | 1.425412 | GTTAACGATGCCACGTCACT | 58.575 | 50.000 | 5.80 | 0.00 | 45.83 | 3.41 |
293 | 294 | 0.092351 | CGTTAACGATGCCACGTCAC | 59.908 | 55.000 | 23.35 | 5.66 | 45.83 | 3.67 |
294 | 295 | 0.318869 | ACGTTAACGATGCCACGTCA | 60.319 | 50.000 | 33.06 | 0.00 | 41.97 | 4.35 |
295 | 296 | 0.092351 | CACGTTAACGATGCCACGTC | 59.908 | 55.000 | 33.06 | 0.00 | 43.79 | 4.34 |
296 | 297 | 1.286354 | CCACGTTAACGATGCCACGT | 61.286 | 55.000 | 33.06 | 7.10 | 46.45 | 4.49 |
297 | 298 | 1.418367 | CCACGTTAACGATGCCACG | 59.582 | 57.895 | 33.06 | 6.38 | 43.02 | 4.94 |
298 | 299 | 0.671163 | TCCCACGTTAACGATGCCAC | 60.671 | 55.000 | 33.06 | 0.00 | 43.02 | 5.01 |
299 | 300 | 0.250793 | ATCCCACGTTAACGATGCCA | 59.749 | 50.000 | 33.06 | 15.53 | 43.02 | 4.92 |
300 | 301 | 1.375551 | AATCCCACGTTAACGATGCC | 58.624 | 50.000 | 33.06 | 0.00 | 43.02 | 4.40 |
301 | 302 | 3.000925 | CAGTAATCCCACGTTAACGATGC | 59.999 | 47.826 | 33.06 | 14.45 | 43.02 | 3.91 |
302 | 303 | 4.178540 | ACAGTAATCCCACGTTAACGATG | 58.821 | 43.478 | 33.06 | 24.21 | 43.02 | 3.84 |
303 | 304 | 4.460948 | ACAGTAATCCCACGTTAACGAT | 57.539 | 40.909 | 33.06 | 14.09 | 43.02 | 3.73 |
304 | 305 | 3.940209 | ACAGTAATCCCACGTTAACGA | 57.060 | 42.857 | 33.06 | 12.27 | 43.02 | 3.85 |
305 | 306 | 3.549070 | GCTACAGTAATCCCACGTTAACG | 59.451 | 47.826 | 25.68 | 25.68 | 46.33 | 3.18 |
306 | 307 | 3.867493 | GGCTACAGTAATCCCACGTTAAC | 59.133 | 47.826 | 0.00 | 0.00 | 0.00 | 2.01 |
307 | 308 | 3.770933 | AGGCTACAGTAATCCCACGTTAA | 59.229 | 43.478 | 0.00 | 0.00 | 0.00 | 2.01 |
308 | 309 | 3.368248 | AGGCTACAGTAATCCCACGTTA | 58.632 | 45.455 | 0.00 | 0.00 | 0.00 | 3.18 |
309 | 310 | 2.185387 | AGGCTACAGTAATCCCACGTT | 58.815 | 47.619 | 0.00 | 0.00 | 0.00 | 3.99 |
310 | 311 | 1.861982 | AGGCTACAGTAATCCCACGT | 58.138 | 50.000 | 0.00 | 0.00 | 0.00 | 4.49 |
311 | 312 | 4.602340 | ATTAGGCTACAGTAATCCCACG | 57.398 | 45.455 | 0.00 | 0.00 | 0.00 | 4.94 |
312 | 313 | 7.104290 | GGATAATTAGGCTACAGTAATCCCAC | 58.896 | 42.308 | 0.00 | 0.00 | 0.00 | 4.61 |
313 | 314 | 6.070995 | CGGATAATTAGGCTACAGTAATCCCA | 60.071 | 42.308 | 0.00 | 0.00 | 0.00 | 4.37 |
314 | 315 | 6.338937 | CGGATAATTAGGCTACAGTAATCCC | 58.661 | 44.000 | 0.00 | 0.00 | 0.00 | 3.85 |
315 | 316 | 6.338937 | CCGGATAATTAGGCTACAGTAATCC | 58.661 | 44.000 | 0.00 | 2.50 | 0.00 | 3.01 |
316 | 317 | 6.338937 | CCCGGATAATTAGGCTACAGTAATC | 58.661 | 44.000 | 0.73 | 0.00 | 0.00 | 1.75 |
317 | 318 | 5.338137 | GCCCGGATAATTAGGCTACAGTAAT | 60.338 | 44.000 | 0.73 | 0.00 | 42.34 | 1.89 |
318 | 319 | 4.020839 | GCCCGGATAATTAGGCTACAGTAA | 60.021 | 45.833 | 0.73 | 0.00 | 42.34 | 2.24 |
319 | 320 | 3.512724 | GCCCGGATAATTAGGCTACAGTA | 59.487 | 47.826 | 0.73 | 0.00 | 42.34 | 2.74 |
320 | 321 | 2.302157 | GCCCGGATAATTAGGCTACAGT | 59.698 | 50.000 | 0.73 | 0.00 | 42.34 | 3.55 |
321 | 322 | 2.674177 | CGCCCGGATAATTAGGCTACAG | 60.674 | 54.545 | 0.73 | 0.00 | 43.48 | 2.74 |
322 | 323 | 1.274167 | CGCCCGGATAATTAGGCTACA | 59.726 | 52.381 | 0.73 | 0.00 | 43.48 | 2.74 |
323 | 324 | 1.274447 | ACGCCCGGATAATTAGGCTAC | 59.726 | 52.381 | 0.73 | 0.00 | 43.48 | 3.58 |
324 | 325 | 1.547372 | GACGCCCGGATAATTAGGCTA | 59.453 | 52.381 | 0.73 | 0.00 | 43.48 | 3.93 |
325 | 326 | 0.320697 | GACGCCCGGATAATTAGGCT | 59.679 | 55.000 | 0.73 | 0.00 | 43.48 | 4.58 |
326 | 327 | 0.034337 | TGACGCCCGGATAATTAGGC | 59.966 | 55.000 | 0.73 | 3.86 | 42.18 | 3.93 |
327 | 328 | 1.069513 | TGTGACGCCCGGATAATTAGG | 59.930 | 52.381 | 0.73 | 0.00 | 0.00 | 2.69 |
328 | 329 | 2.132762 | GTGTGACGCCCGGATAATTAG | 58.867 | 52.381 | 0.73 | 0.00 | 0.00 | 1.73 |
329 | 330 | 1.758280 | AGTGTGACGCCCGGATAATTA | 59.242 | 47.619 | 0.73 | 0.00 | 0.00 | 1.40 |
330 | 331 | 0.539986 | AGTGTGACGCCCGGATAATT | 59.460 | 50.000 | 0.73 | 0.00 | 0.00 | 1.40 |
331 | 332 | 0.539986 | AAGTGTGACGCCCGGATAAT | 59.460 | 50.000 | 0.73 | 0.00 | 0.00 | 1.28 |
332 | 333 | 0.322322 | AAAGTGTGACGCCCGGATAA | 59.678 | 50.000 | 0.73 | 0.00 | 0.00 | 1.75 |
333 | 334 | 0.108520 | GAAAGTGTGACGCCCGGATA | 60.109 | 55.000 | 0.73 | 0.00 | 0.00 | 2.59 |
334 | 335 | 1.375523 | GAAAGTGTGACGCCCGGAT | 60.376 | 57.895 | 0.73 | 0.00 | 0.00 | 4.18 |
335 | 336 | 2.029964 | GAAAGTGTGACGCCCGGA | 59.970 | 61.111 | 0.73 | 0.00 | 0.00 | 5.14 |
336 | 337 | 1.234615 | AATGAAAGTGTGACGCCCGG | 61.235 | 55.000 | 0.00 | 0.00 | 0.00 | 5.73 |
337 | 338 | 0.591170 | AAATGAAAGTGTGACGCCCG | 59.409 | 50.000 | 0.00 | 0.00 | 0.00 | 6.13 |
338 | 339 | 2.034053 | TCAAAATGAAAGTGTGACGCCC | 59.966 | 45.455 | 0.00 | 0.00 | 0.00 | 6.13 |
339 | 340 | 3.243068 | ACTCAAAATGAAAGTGTGACGCC | 60.243 | 43.478 | 0.00 | 0.00 | 0.00 | 5.68 |
340 | 341 | 3.952535 | ACTCAAAATGAAAGTGTGACGC | 58.047 | 40.909 | 0.00 | 0.00 | 0.00 | 5.19 |
341 | 342 | 5.907391 | GGTAACTCAAAATGAAAGTGTGACG | 59.093 | 40.000 | 0.00 | 0.00 | 0.00 | 4.35 |
342 | 343 | 6.791303 | TGGTAACTCAAAATGAAAGTGTGAC | 58.209 | 36.000 | 0.00 | 0.00 | 37.61 | 3.67 |
343 | 344 | 7.094162 | TGTTGGTAACTCAAAATGAAAGTGTGA | 60.094 | 33.333 | 0.00 | 0.00 | 37.61 | 3.58 |
344 | 345 | 7.009174 | GTGTTGGTAACTCAAAATGAAAGTGTG | 59.991 | 37.037 | 0.00 | 0.00 | 37.61 | 3.82 |
345 | 346 | 7.033185 | GTGTTGGTAACTCAAAATGAAAGTGT | 58.967 | 34.615 | 0.00 | 0.00 | 37.61 | 3.55 |
346 | 347 | 7.257722 | AGTGTTGGTAACTCAAAATGAAAGTG | 58.742 | 34.615 | 0.00 | 0.00 | 37.61 | 3.16 |
566 | 567 | 4.134563 | TGCTCTAGTGAAGAAACCCAAAC | 58.865 | 43.478 | 0.00 | 0.00 | 32.46 | 2.93 |
815 | 817 | 4.020218 | TGAATCGAGTGGGAGTTGATCTTT | 60.020 | 41.667 | 0.00 | 0.00 | 0.00 | 2.52 |
1015 | 1017 | 3.838565 | TGAGGTTTATCAGGTTGCCAAA | 58.161 | 40.909 | 0.00 | 0.00 | 0.00 | 3.28 |
1023 | 1025 | 8.697507 | AGGCTAAATATTTGAGGTTTATCAGG | 57.302 | 34.615 | 11.05 | 0.00 | 0.00 | 3.86 |
1029 | 1031 | 8.646900 | TGAAACAAGGCTAAATATTTGAGGTTT | 58.353 | 29.630 | 11.05 | 11.32 | 0.00 | 3.27 |
1056 | 1058 | 5.482175 | TGGTATTGATCCCGAAATTTGGTTT | 59.518 | 36.000 | 0.00 | 0.00 | 0.00 | 3.27 |
1092 | 1094 | 3.622163 | TGTTTTGGATGCTTTGCAACTTG | 59.378 | 39.130 | 0.00 | 0.00 | 43.62 | 3.16 |
1128 | 1130 | 7.391554 | TGAGGAAGAGAACCTGATAATTTGTTG | 59.608 | 37.037 | 0.00 | 0.00 | 37.93 | 3.33 |
1245 | 1247 | 5.365403 | CGATAGCGAGAGATTTTAGTCCT | 57.635 | 43.478 | 0.00 | 0.00 | 40.82 | 3.85 |
1262 | 1264 | 7.413438 | GGCCATTGAACATATTAGAAGCGATAG | 60.413 | 40.741 | 0.00 | 0.00 | 0.00 | 2.08 |
1264 | 1266 | 5.182001 | GGCCATTGAACATATTAGAAGCGAT | 59.818 | 40.000 | 0.00 | 0.00 | 0.00 | 4.58 |
1290 | 1292 | 7.839680 | ACATGTCTTTAAACTCCTTGGAATT | 57.160 | 32.000 | 0.00 | 0.00 | 0.00 | 2.17 |
1399 | 1401 | 0.109532 | TTCGTTGACAAGCCCATCCA | 59.890 | 50.000 | 0.00 | 0.00 | 0.00 | 3.41 |
1405 | 1407 | 3.851098 | AGAGTCTATTCGTTGACAAGCC | 58.149 | 45.455 | 0.00 | 0.00 | 35.81 | 4.35 |
1414 | 1416 | 2.028130 | CTGCCCAGAGAGTCTATTCGT | 58.972 | 52.381 | 0.00 | 0.00 | 0.00 | 3.85 |
1445 | 1447 | 3.873910 | AGTTGGGTACATGCACATAGAC | 58.126 | 45.455 | 0.00 | 0.00 | 0.00 | 2.59 |
1620 | 1623 | 7.910162 | CCAAATAACTGGTTCGATGATAAGTTG | 59.090 | 37.037 | 8.76 | 0.00 | 0.00 | 3.16 |
1771 | 1774 | 1.496934 | CCGTTGAATTGGTTGTTGCC | 58.503 | 50.000 | 0.00 | 0.00 | 0.00 | 4.52 |
1772 | 1775 | 1.067821 | TCCCGTTGAATTGGTTGTTGC | 59.932 | 47.619 | 0.00 | 0.00 | 0.00 | 4.17 |
1780 | 1783 | 1.613437 | AGGCAAACTCCCGTTGAATTG | 59.387 | 47.619 | 0.00 | 0.00 | 32.65 | 2.32 |
1782 | 1785 | 1.247567 | CAGGCAAACTCCCGTTGAAT | 58.752 | 50.000 | 0.00 | 0.00 | 32.65 | 2.57 |
1788 | 1791 | 2.113139 | ACACCAGGCAAACTCCCG | 59.887 | 61.111 | 0.00 | 0.00 | 0.00 | 5.14 |
1911 | 1914 | 9.726232 | CCACTGAACTGATTATGTGATAAATTG | 57.274 | 33.333 | 0.00 | 0.00 | 0.00 | 2.32 |
1938 | 1941 | 2.037144 | GCAATGGAGGATGGAATGCTT | 58.963 | 47.619 | 0.00 | 0.00 | 45.52 | 3.91 |
1961 | 1964 | 1.610522 | GTGTTGAAAGGCTCAGCATGT | 59.389 | 47.619 | 0.00 | 0.00 | 45.67 | 3.21 |
1966 | 1969 | 3.567164 | ACATCAAGTGTTGAAAGGCTCAG | 59.433 | 43.478 | 0.00 | 0.00 | 43.95 | 3.35 |
2076 | 2079 | 1.270907 | AGCCAGAGAGGTTACCACAG | 58.729 | 55.000 | 3.51 | 0.00 | 40.61 | 3.66 |
2095 | 2098 | 2.630580 | GGGTTGAATAACAAGGTGGCAA | 59.369 | 45.455 | 0.00 | 0.00 | 39.30 | 4.52 |
2161 | 2164 | 1.355381 | ACCCATCACAAGAGCAATGGA | 59.645 | 47.619 | 1.85 | 0.00 | 40.98 | 3.41 |
2163 | 2166 | 3.671433 | CGAAACCCATCACAAGAGCAATG | 60.671 | 47.826 | 0.00 | 0.00 | 0.00 | 2.82 |
2284 | 2287 | 2.159627 | CCAGTCTTCCGTCAAAATTCCG | 59.840 | 50.000 | 0.00 | 0.00 | 0.00 | 4.30 |
2578 | 2584 | 2.212752 | ATTCCATGGAGGCTTCCCTA | 57.787 | 50.000 | 15.53 | 0.00 | 43.12 | 3.53 |
2619 | 2625 | 9.625747 | ATTCTCTTCTTCCAATCTAATTCCTTC | 57.374 | 33.333 | 0.00 | 0.00 | 0.00 | 3.46 |
2689 | 2695 | 5.645497 | GGATTATAGGTGGACTGCATTCATC | 59.355 | 44.000 | 6.38 | 0.00 | 0.00 | 2.92 |
2691 | 2697 | 4.411869 | TGGATTATAGGTGGACTGCATTCA | 59.588 | 41.667 | 6.38 | 0.00 | 0.00 | 2.57 |
2865 | 2871 | 9.364989 | CTTCTGATGTGAAAAACAAGGTTAAAA | 57.635 | 29.630 | 0.00 | 0.00 | 43.61 | 1.52 |
2867 | 2873 | 6.978080 | GCTTCTGATGTGAAAAACAAGGTTAA | 59.022 | 34.615 | 0.00 | 0.00 | 43.61 | 2.01 |
3159 | 3167 | 5.332743 | AGATTCCAAACAAGATAAGGCCAA | 58.667 | 37.500 | 5.01 | 0.00 | 0.00 | 4.52 |
3214 | 3222 | 3.449377 | TCGCTGGATGAGTGTTTGGTATA | 59.551 | 43.478 | 0.00 | 0.00 | 33.51 | 1.47 |
3251 | 3259 | 0.662619 | CGCTGAAAGGCACAGAACAA | 59.337 | 50.000 | 9.76 | 0.00 | 37.54 | 2.83 |
3255 | 3263 | 3.043713 | CGCGCTGAAAGGCACAGA | 61.044 | 61.111 | 5.56 | 0.00 | 37.54 | 3.41 |
3298 | 3310 | 8.642935 | TCACTAGGATTCAGACCTTATATCAG | 57.357 | 38.462 | 0.00 | 0.00 | 38.76 | 2.90 |
3337 | 3350 | 0.729690 | GAATCGGCCTCTGCTTTGAC | 59.270 | 55.000 | 0.00 | 0.00 | 37.74 | 3.18 |
3409 | 3431 | 3.580904 | GCATGGCATGGCATACAAG | 57.419 | 52.632 | 31.77 | 21.00 | 0.00 | 3.16 |
3417 | 3444 | 2.717044 | CCTGTGTGGCATGGCATGG | 61.717 | 63.158 | 26.07 | 19.44 | 0.00 | 3.66 |
![](/static/images/cyverse_long.png)
Based at the University of Bristol with support from BBSRC.
AutoCloner maintained by Alex Coulton.